Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 169 of 210
Found at i:56361858 original size:255 final size:255
Alignment explanation
Indices: 56361398--56361906 Score: 547
Period size: 255 Copynumber: 2.0 Consensus size: 255
56361388 GCCTTTGGTC
* * *
56361398 GTGCAGGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
1 GTGCAGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
* * ** * * *
56361463 CGGCACCTGGGCACTCGGATGTGCTGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGT
66 CGGCACCTCGGCACTAGGACCTGCGGGAGCCTCAGACAACATCGGCAACCAAGGCCCTTGGTCGT
* * * * * ** * ** *
56361528 GCAAAAGCCTCGGGCACCGTCGGCACCTAGGCGCTTGAATGTGTAGGAGCCTCGGGTACCATCGA
131 GCAAAAGCCTCGAGAACCATCGACACCTAGGAGCTTGAATGTACAGGAACCTCGGACAACATCGA
* * * *
56361593 CAAACTAGGCCCCCCGTCGTACGTGAGCGTCGGGCACGATTGGCACCT-GGGCGCTCAGAT
196 CAAACTAGGCCCCCCGTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGG-GCTCAGAT
* *
56361653 GTGCAGGAGCGTCGGACACCATCGACAAACTAGGCCCTTGGTCTTGCGAGAGCCTCAG-GCACCA
1 GTGCAGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTC-GTGCACCA
** * * ** * *
56361717 TCGGCACCTCGGTGCTATGACCTGCGGGAGCCTCGGACAATGTCGGTATCCAAGGCCCTTGGTCG
65 TCGGCACCTCGGCACTAGGACCTGCGGGAGCCTCAGACAACATCGGCAACCAAGGCCCTTGGTCG
**** *
56361782 TGTGGGAGCCTCGAGAACCATCGACACCTTGGAGCTT-AGATGTACAGGAACCTCGGACAACATC
130 TGCAAAAGCCTCGAGAACCATCGACACCTAGGAGCTTGA-ATGTACAGGAACCTCGGACAACATC
** * *** *
56361846 GGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGGGCTCAGA
194 GACAAACTAGGCCCCCCGTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGGGCTCAGA
56361907 CACAATCGGC
Statistics
Matches: 204, Mismatches: 47, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
254 1 0.00
255 199 0.98
256 4 0.02
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (255 bp):
GTGCAGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
CGGCACCTCGGCACTAGGACCTGCGGGAGCCTCAGACAACATCGGCAACCAAGGCCCTTGGTCGT
GCAAAAGCCTCGAGAACCATCGACACCTAGGAGCTTGAATGTACAGGAACCTCGGACAACATCGA
CAAACTAGGCCCCCCGTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGGGCTCAGAT
Found at i:56362029 original size:43 final size:42
Alignment explanation
Indices: 56361980--56362139 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 42
56361970 ATTTGTTTTA
**
56361980 CGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCAGATGTG
1 CGGGAGCCTCAAGCACCATCGGCACCTTGGTGGCTC-GATGTG
* * * *
56362023 CAGGAGCCTCAAGCAGCATAGGCACCTTGGTGGCTCGAAAGTG
1 CGGGAGCCTCAAGCACCATCGGCACCTTGGTGGCTCG-ATGTG
* *
56362066 CGGGAGCCTC-AGACACCATCAGCAACCTTGGT-GCTTGGATGTG
1 CGGGAGCCTCAAG-CACCATCGGC-ACCTTGGTGGC-TCGATGTG
* *
56362109 TGGGAGCCTCGAGCACCATCGGCACCTTGGT
1 CGGGAGCCTCAAGCACCATCGGCACCTTGGT
56362140 TCTTGGGACG
Statistics
Matches: 98, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 11 0.11
43 75 0.77
44 12 0.12
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (42 bp):
CGGGAGCCTCAAGCACCATCGGCACCTTGGTGGCTCGATGTG
Found at i:56362083 original size:86 final size:86
Alignment explanation
Indices: 56361980--56362139 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 86
56361970 ATTTGTTTTA
* * * *
56361980 CGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCAGCATAG
1 CGGGAGCCTCAGACACCATCAGCAACCTTGGT-GCTCAGATGTGCAGGAGCCTCAAGCACCATAG
56362044 GCACCTTGGTGGCTCGAAAGTG
65 GCACCTTGGTGGCTCGAAAGTG
** ** * *
56362066 CGGGAGCCTCAGACACCATCAGCAACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCATCGG
1 CGGGAGCCTCAGACACCATCAGCAACCTTGGTGCTCAGATGTGCAGGAGCCTCAAGCACCATAGG
56362131 CACCTTGGT
66 CACCTTGGT
56362140 TCTTGGGACG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
86 55 0.87
87 8 0.13
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (86 bp):
CGGGAGCCTCAGACACCATCAGCAACCTTGGTGCTCAGATGTGCAGGAGCCTCAAGCACCATAGG
CACCTTGGTGGCTCGAAAGTG
Found at i:56367869 original size:85 final size:85
Alignment explanation
Indices: 56367744--56368033 Score: 368
Period size: 85 Copynumber: 3.4 Consensus size: 85
56367734 TCCAGCAGCA
* * * * * *
56367744 TAGGCCCTTGGTCGTGCAGGAGTCTCGAGCACCATCGGCACCTTGGTGCTAAGATGTACGGGAGC
1 TAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATAGGCACCTAGGCGCTAGGATGTACGGGAGC
* *
56367809 CTCGAACACCATCGGCAACC
66 CTCGGACACCATCGGCAAAC
* * * *
56367829 TAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACTATTGGCACCTAGGCGCTCGGATGTACTGGAG
1 TAGGCCCTTGGTCGTGCAG-GAGCCTCGGGCACCATAGGCACCTAGGCGCTAGGATGTACGGGAG
*
56367893 CCTCGGACACCATCGGTAAAC
65 CCTCGGACACCATCGGCAAAC
* * * * *
56367914 TAGGCCCATGGTCGTACAGGAGCCTCGGGCACCATAGGCACCTGGGCGCTTGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATAGGCACCTAGGCGCTAGGATGTACGGGAGC
*
56367979 GTCGGACACCATCGGCAAAC
66 CTCGGACACCATCGGCAAAC
*
56367999 TAGGCCCTTGGTCTTGC-GAGAGCCTCGGGCACCAT
1 TAGGCCCTTGGTCGTGCAG-GAGCCTCGGGCACCAT
56368034 CAGCTACCTG
Statistics
Matches: 177, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
84 2 0.01
85 174 0.98
86 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATAGGCACCTAGGCGCTAGGATGTACGGGAGC
CTCGGACACCATCGGCAAAC
Found at i:56367936 original size:43 final size:42
Alignment explanation
Indices: 56367744--56368508 Score: 354
Period size: 43 Copynumber: 18.0 Consensus size: 42
56367734 TCCAGCAGCA
* * *
56367744 TAGGCCCTTGGTCGTGCAGGAGTCTC-GAGCACCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGAACC
* ** * * * *
56367786 TTGGTGCTAAGAT-GTACGGGAGCCTCGAACACCATCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGG-AACC
* * * * *
56367829 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACTATTGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
* * * * *
56367871 TAGGCGCTCGGAT-GTACTGGAGCCTCGGACACCATCGGTAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACC
* * * * * *
56367914 TAGGCCCATGGTCGTACAGGAGCCTCGGGCACCATAGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
* * * *
56367956 TGGGCGCTTGGAT-GTGCGGGAGCGTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACC
* * * **
56367999 TAGGCCCTTGGTCTTGCGAGAGCCTCGGGCACCATCAGCTACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC-GGAACC
*
56368042 TGGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATC-GACACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGA-ACC
* ** * * ** *
56368084 TTGGTGCTTGGAT-GTGCGGGAACCTCAGACAGTATCAGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATC-GGAACC
*** * *
56368127 TAGGCCCTTGGTCGTGCAATAGCCTCGGGCACCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
* * * * * * * *
56368169 TGGGCACTCGGAT-GTACGGGAGCGTTGGACACCATCAGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATC-GGAACC
* * * *
56368212 TAGGTCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
* ** * ***
56368254 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACAATGTC-GACATCC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGA-A-CC
*
56368297 TAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATC-AACACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGA-ACC
* ** * * *** * *
56368339 TTGGTGCTTGGAT-GTACGGGAGCCTCAGACAATGTTGGCATCC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACC
** ** *
56368382 TAGGCCCTTGGTCG-GCAAGAGCCTCGGGTACCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
** * * * * *
56368423 TAGGGGCTCGGAT-GTGCGAGAGGCTCGGACACCATCGACAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCG-GAACC
* ** * *
56368466 TAAGCCCTTGGTCCCGCGGGAGCCTCGGGCACCATCGGTACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
56368508 T
1 T
56368509 CGGTGCTCAG
Statistics
Matches: 514, Mismatches: 174, Indels: 70
0.68 0.23 0.09
Matches are distributed among these distances:
41 12 0.02
42 243 0.47
43 256 0.50
44 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (42 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
Found at i:56368032 original size:128 final size:127
Alignment explanation
Indices: 56367890--56368164 Score: 334
Period size: 128 Copynumber: 2.1 Consensus size: 127
56367880 GGATGTACTG
* * *
56367890 GAGCCTCGGACACCATCGGTAAACTAGGCCCATGGTCGTACAGGAGCCTCGGGCACCATAGGCAC
1 GAGCCTCGGGCACCATCGGT-AACTAGGCCCATGGTCGTACAGGAGCCTCGAGCACCATAGACAC
* * * * * *
56367955 CTGGGCGCTTGGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGA
65 CTGGGCGCTTGGATGTGCGGGAACCTCAGACACCATCAGCAAACTAGGCCCTTGGTCGTGCAA
* * * * * * *
56368018 GAGCCTCGGGCACCATCAGCTACCTGGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGGCACCATC-GGTAACTAGGCCCATGGTCGTACAGGAGCCTCGAGCACCATAGACAC
* * ** *
56368083 CTTGGTGCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAA
65 CTGGGCGCTTGGATGTGCGGGAACCTCAGACACCATCAGCAAACTAGGCCCTTGGTCGTGCAA
*
56368146 TAGCCTCGGGCACCATCGG
1 GAGCCTCGGGCACCATCGG
56368165 CACCTGGGCA
Statistics
Matches: 123, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
127 1 0.01
128 120 0.98
129 2 0.02
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (127 bp):
GAGCCTCGGGCACCATCGGTAACTAGGCCCATGGTCGTACAGGAGCCTCGAGCACCATAGACACC
TGGGCGCTTGGATGTGCGGGAACCTCAGACACCATCAGCAAACTAGGCCCTTGGTCGTGCAA
Found at i:56368138 original size:85 final size:85
Alignment explanation
Indices: 56367969--56368706 Score: 565
Period size: 85 Copynumber: 8.7 Consensus size: 85
56367959 GCGCTTGGAT
* * * * ** * * * *
56367969 GTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGG-TCTTGCGAGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACAACA
* *
56368033 TCAGCTACCTGGGCCCTTGGTC
64 TCAGCAACCTAGGCCCTTGGTC
* * * * **
56368055 GTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCAGACAGTATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
56368120 AGCAACCTAGGCCCTTGGTC
66 AGCAACCTAGGCCCTTGGTC
*** * ** * * * * *
56368140 GTGCAATAGCCTCGGGCACCATCGGCACCTGGGCACTCGGATGTACGGGAGCGTTGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
* *
56368205 AGCAAACTAGGTCCTTGGTC
66 AGCAACCTAGGCCCTTGGTC
* * **
56368225 GTGCGGGAGCCTCGGGCACCATTGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCGGACAATGT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCT-TGGATGTGCGGGAGCCTCGGACAACAT
*
56368289 C-GACATCCTAGGCCCTTGGTC
65 CAG-CAACCTAGGCCCTTGGTC
* ** * * ** *
56368310 GTGCGGGAGCCTCGAGCACCATCAACACCTTGGTGCTTGGATGTACGGGAGCCTCAGACAATGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
* *
56368375 GGCATCCTAGGCCCTTGGTC
66 AGCAACCTAGGCCCTTGGTC
** * * * * * * *
56368395 G-GCAAGAGCCTCGGGTACCATCGGCACCTAGGGGCTCGGATGTGCGAGAGGCTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
* *
56368459 -GACAAACTAAGCCCTTGGTC
66 AG-CAACCTAGGCCCTTGGTC
** * * ** * * *
56368479 CCGCGGGAGCCTCGGGCACCATCGGTACCTCGGTGCTCAGATGTGCAGGAACCTCGGGCAACATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
* * *
56368544 GGCAGA-ATAGGCCCTTCGTC
66 AGCA-ACCTAGGCCCTTGGTC
* * * *
56368564 GTGCGAGAGCCTCAGGCACCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCT-TGAGCAGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGGA-CAACA
** * ** ** *
56368628 TGGGC-ACCTTGGTGGCTCAGAC
64 TCAGCAACCTAGG-CCCTTGGTC
* * * *
56368650 GTGCGGGAGCCTCGGACACCATTGGCAACCTTAGTGCTTGGATGTGCCGGAGCCTCG
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCG
56368707 AGCACCATTG
Statistics
Matches: 512, Mismatches: 125, Indels: 29
0.77 0.19 0.04
Matches are distributed among these distances:
83 1 0.00
84 64 0.12
85 345 0.67
86 95 0.19
87 7 0.01
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
AGCAACCTAGGCCCTTGGTC
Found at i:56368172 original size:213 final size:213
Alignment explanation
Indices: 56367805--56368246 Score: 569
Period size: 213 Copynumber: 2.1 Consensus size: 213
56367795 AGATGTACGG
** * * * * *
56367805 GAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACTATTGGCAC
1 GAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACAC
* * * * * *
56367870 CTAGGCGCTCGGATGTACTGGAGCCTCGGACACCATCGGTAAACTAGGCCCATGGTCGTACAGGA
66 CTAGGCGCTCGGATGTACGGGAACCTCAGACACCATCAGCAAACTAGGCCCATGGTCGTACAAGA
* * * *
56367935 GCCTCGGGCACCATAGGCACCTGGGCGCTTGGATGTGCGGGAGCGTCGGACACCATCGGCAAACT
131 GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
*
56368000 AGGCCCTTGGTCTTGCGA
196 AGGCCCTTGGTCGTGCGA
* * *
56368018 GAGCCTCGGGCACCATCAGCTACCTGGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACAC
* * * * ** * * * *
56368083 CTTGGTGCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAATA
66 CTAGGCGCTCGGATGTACGGGAACCTCAGACACCATCAGCAAACTAGGCCCATGGTCGTACAAGA
* *
56368148 GCCTCGGGCACCATCGGCACCTGGGCACTCGGATGTACGGGAGCGTTGGACACCATCAGCAAACT
131 GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
* *
56368213 AGGTCCTTGGTCGTGCGG
196 AGGCCCTTGGTCGTGCGA
56368231 GAGCCTCGGGCACCAT
1 GAGCCTCGGGCACCAT
56368247 TGGCACCTCG
Statistics
Matches: 194, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
213 194 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (213 bp):
GAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACAC
CTAGGCGCTCGGATGTACGGGAACCTCAGACACCATCAGCAAACTAGGCCCATGGTCGTACAAGA
GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
AGGCCCTTGGTCGTGCGA
Found at i:56368222 original size:128 final size:128
Alignment explanation
Indices: 56367923--56368416 Score: 317
Period size: 128 Copynumber: 3.9 Consensus size: 128
56367913 CTAGGCCCAT
* * * * * * * *
56367923 GGTCGTACAGGAGCCTCGGGCACCATAGGCACCT-GGGCGCTTGGATGTGCGGGAGCGTCGGACA
1 GGTCGTACGGGAGCCTCGAGCACCATCGACAACTAGGTC-CTTGGATGTGCGGGAGCCTCAGACA
* * * * *
56367987 CCATCGGCAAACTAGGCCCTTGGTCTTGCGAGAGCCTCGGGCACCATCAGCTACCTGGGCCCTT
65 CCATCAGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCAGCTACCTGGGCACTC
* * * * * *
56368051 GGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCAGACAG
1 GGTCGTACGGGAGCCTCGAGCACCATCGACAACTAGGTCCTTGGATGTGCGGGAGCCTCAGACAC
* * * *
56368116 TATCAGCAACCTAGGCCCTTGGTCGTGCAATAGCCTCGGGCACCATCGGC-ACCTGGGCACTC
66 CATCAGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCAGCTACCTGGGCACTC
* * *
56368178 GGAT-GTACGGGAGCGTTG-GACACCATC-AGCAAACTAGGTCCTTGG-TCGTGCGGGAGCCTCG
1 GG-TCGTACGGGAGCCTCGAG-CACCATCGA-C-AACTAGGTCCTTGGAT-GTGCGGGAGCCTCA
* ** * * ** * ** * *** *
56368239 GGCACCATTGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACAATGTC-GAC-ATCCTAG
61 GACACCATCAGCAAACTAGGCCCT-TGGTCGTGCAAGAGCCTCGGGCACCATCAG-CTA-CCTGG
* *
56368300 GCCCTT
123 GCACTC
* * * * * * *
56368306 GGTCGTGCGGGAGCCTCGAGCACCATCAACACCTTGGTGCTTGGATGTACGGGAGCCTCAGACAA
1 GGTCGTACGGGAGCCTCGAGCACCATCGACAACTAGGTCCTTGGATGTGCGGGAGCCTCAGACAC
** ** ** *
56368371 TGTTGGCATCCTAGGCCCTTGGTCG-GCAAGAGCCTCGGGTACCATC
66 CATCAGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATC
56368417 GGCACCTAGG
Statistics
Matches: 280, Mismatches: 71, Indels: 31
0.73 0.19 0.08
Matches are distributed among these distances:
126 3 0.01
127 107 0.38
128 166 0.59
129 4 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (128 bp):
GGTCGTACGGGAGCCTCGAGCACCATCGACAACTAGGTCCTTGGATGTGCGGGAGCCTCAGACAC
CATCAGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCAGCTACCTGGGCACTC
Found at i:56368284 original size:298 final size:298
Alignment explanation
Indices: 56367746--56368333 Score: 802
Period size: 298 Copynumber: 2.0 Consensus size: 298
56367736 CAGCAGCATA
* * *
56367746 GGCCCTTGGTCGTGCAGGAGTCTCGAGCACCATCGGCACCTTGGTGCTAAGATGTACGGGAGCCT
1 GGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGACACCTTGGTGCTAAGATGTACGGGAACCT
* * * *
56367811 CGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACTATTGGCACCTAGGC
66 CGAACACCATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGGC
* * * *
56367876 GCTCGGATGTACTGGAGCCTCGGACACCATCGGTAAACTAGGCCCATGGTCGTACAGGAGCCTCG
131 ACTCGGATGTACGGGAGCCTCGGACACCATCAGCAAACTAGGCCCATGGTCGTACAGGAGCCTCG
* * * *
56367941 GGCACCATAGGCACCTGGGCGCTTGGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCC
196 GGCACCATAGGCACCTCGGCGCTTGGATGTGCGGGAGCCTCGGACAACATCGACAAACTAGGCCC
* *
56368006 TTGGTCTTGCGAGAGCCTCGGGCACCATCAGCTACCTG
261 TTGGTCGTGCGAGAGCCTCGAGCACCATCAGCTACCTG
* ** *
56368044 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCT
1 GGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGACACCTTGGTGCTAAGATGTACGGGAACCT
** * *
56368109 C-AGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAATAGCCTCGGGCACCATCGGCACCTGGG
66 CGA-ACACCATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGG
* * * * * *
56368173 CACTCGGATGTACGGGAGCGTTGGACACCATCAGCAAACTAGGTCCTTGGTCGTGCGGGAGCCTC
130 CACTCGGATGTACGGGAGCCTCGGACACCATCAGCAAACTAGGCCCATGGTCGTACAGGAGCCTC
* * ** **
56368238 GGGCACCATTGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCGGACAATGTCGACATCCTAGGC
195 GGGCACCATAGGCACCTCGGCGCT-TGGATGTGCGGGAGCCTCGGACAACATCGACAAACTAGGC
*
56368302 CCTTGGTCGTGCGGGAGCCTCGAGCACCATCA
259 CCTTGGTCGTGCGAGAGCCTCGAGCACCATCA
56368334 ACACCTTGGT
Statistics
Matches: 250, Mismatches: 38, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
297 1 0.00
298 248 0.99
299 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (298 bp):
GGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGACACCTTGGTGCTAAGATGTACGGGAACCT
CGAACACCATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGGC
ACTCGGATGTACGGGAGCCTCGGACACCATCAGCAAACTAGGCCCATGGTCGTACAGGAGCCTCG
GGCACCATAGGCACCTCGGCGCTTGGATGTGCGGGAGCCTCGGACAACATCGACAAACTAGGCCC
TTGGTCGTGCGAGAGCCTCGAGCACCATCAGCTACCTG
Found at i:56368316 original size:213 final size:213
Alignment explanation
Indices: 56367805--56368322 Score: 542
Period size: 213 Copynumber: 2.4 Consensus size: 213
56367795 AGATGTACGG
** * * * * * * * * *
56367805 GAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACTATTGGCAC
1 GAGCCTCGGGCACCATCAGCTACCTCGGCCCTTGATCGTGCGGGAGCCTCGAGCACAATCGACAC
* * * * * * ** * * * *
56367870 CTAGGCGCTCGGATGTACTGGAGCCTCGGACACCATCGGTAAACTAGGCCCATGGTCGTACAGGA
66 CTAGGCCCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCATGGTCGTACAAGA
* * * *
56367935 GCCTCGGGCACCATAGGCACCTGGGCGCTTGGATGTGCGGGAGCGTCGGACACCATCGGCAAACT
131 GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
*
56368000 AGGCCCTTGGTCTTGCGA
196 AGGCCCTTGGTCGTGCGA
* * *
56368018 GAGCCTCGGGCACCATCAGCTACCTGGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGGCACCATCAGCTACCTCGGCCCTTGATCGTGCGGGAGCCTCGAGCACAATCGACAC
* ** * * *
56368083 CTTGGTGCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAATA
66 CTAGGCCCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCATGGTCGTACAAGA
* *
56368148 GCCTCGGGCACCATCGGCACCTGGGCACTCGGATGTACGGGAGCGTTGGACACCATCAGCAAACT
131 GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
* *
56368213 AGGTCCTTGGTCGTGCGG
196 AGGCCCTTGGTCGTGCGA
** **
56368231 GAGCCTCGGGCACCATTGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCG-G-ACAATGTCGA
1 GAGCCTCGGGCACCATCAGCTACCTCGGCCCT-TGATCGTGCGGGAGCCTCGAGCACAA--TCGA
*
56368292 CATCCTAGGCCCTTGG-TCGTGCGGGAGCCTC
63 CA-CCTAGGCCCTTGGAT-GTGCGGGAACCTC
56368323 GAGCACCATC
Statistics
Matches: 254, Mismatches: 46, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
210 3 0.01
211 1 0.00
212 29 0.11
213 221 0.87
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.19
Consensus pattern (213 bp):
GAGCCTCGGGCACCATCAGCTACCTCGGCCCTTGATCGTGCGGGAGCCTCGAGCACAATCGACAC
CTAGGCCCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCATGGTCGTACAAGA
GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
AGGCCCTTGGTCGTGCGA
Found at i:56368524 original size:254 final size:255
Alignment explanation
Indices: 56368044--56368618 Score: 766
Period size: 254 Copynumber: 2.3 Consensus size: 255
56368034 CAGCTACCTG
*
56368044 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCT
1 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCT
* *
56368109 CAGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAATAGCCTCGGGCACCATCGGCACCTGGGC
66 CAGACAATATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTGGGC
* * * * **
56368174 ACTCGGATGTACGGGAGCGTTGGACACCATCAGCAAACTAGGTCCTTGGTCGTGCGGGAGCCTCG
131 ACTCGGATGTACGAGAGCGTCGGACACCATCAGCAAACTAAGCCCTTGGTCCCGCGGGAGCCTCG
* * * ** ***
56368239 GGCACCATTGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACAATGTCGACATCCTA
196 GGCACCATCGGCACCTCGGTGCTATGATGTGCAGGAACCTCGGACAACATCGACAGAATA
* *
56368299 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAACACCTTGGTGCTTGGATGTACGGGAGCCT
1 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCT
* ** * *
56368364 CAGACAATGTTGGCATCCTAGGCCCTTGGTCG-GCAAGAGCCTCGGGTACCATCGGCACCTAGGG
66 CAGACAATATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCT-GGG
* *
56368428 -GCTCGGATGTGCGAGAG-GCTCGGACACCATC-GACAAACTAAGCCCTTGGTCCCGCGGGAGCC
130 CACTCGGATGTACGAGAGCG-TCGGACACCATCAG-CAAACTAAGCCCTTGGTCCCGCGGGAGCC
* * *
56368490 TCGGGCACCATCGGTACCTCGGTGCTCA-GATGTGCAGGAACCTCGGGCAACATCGGCAGAATA
193 TCGGGCACCATCGGCACCTCGGTGCT-ATGATGTGCAGGAACCTCGGACAACATCGACAGAATA
* * *
56368553 GGCCCTTCGTCGTGCGAGAGCCTC-AGGCACCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGC
1 GGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCATCGACACCTTGGT-GCTTGGATGTGCGGGAGC
56368617 CT
64 CT
56368619 TGAGCAGCAT
Statistics
Matches: 280, Mismatches: 34, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
253 3 0.01
254 165 0.59
255 112 0.40
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (255 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCT
CAGACAATATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTGGGC
ACTCGGATGTACGAGAGCGTCGGACACCATCAGCAAACTAAGCCCTTGGTCCCGCGGGAGCCTCG
GGCACCATCGGCACCTCGGTGCTATGATGTGCAGGAACCTCGGACAACATCGACAGAATA
Found at i:56368611 original size:43 final size:43
Alignment explanation
Indices: 56368564--56368742 Score: 202
Period size: 43 Copynumber: 4.2 Consensus size: 43
56368554 GCCCTTCGTC
* *
56368564 GTGCGAGAGCCTC-AGGCACCATCGGCACCTTGGTGGCTTGGAT
1 GTGCGGGAGCCTCGA-GCACCATTGGCACCTTGGTGGCTTGGAT
* * * ** *
56368607 GTGCGGGAGCCTTGAGCAGCATGGGCACCTTGGTGGCTCAGAC
1 GTGCGGGAGCCTCGAGCACCATTGGCACCTTGGTGGCTTGGAT
*
56368650 GTGCGGGAGCCTCG-GACACCATTGGCAACCTTAGT-GCTTGGAT
1 GTGCGGGAGCCTCGAG-CACCATTGGC-ACCTTGGTGGCTTGGAT
* * *
56368693 GTGCCGGAGCCTCGAGCACCATTGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGAGCACCATTGGCACCTTGGTGGCTTGGAT
56368736 GTGCGGG
1 GTGCGGG
56368743 CTAAAGAAAA
Statistics
Matches: 112, Mismatches: 19, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
42 8 0.07
43 95 0.85
44 9 0.08
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.21
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCACCATTGGCACCTTGGTGGCTTGGAT
Found at i:56368660 original size:86 final size:86
Alignment explanation
Indices: 56368563--56368727 Score: 235
Period size: 86 Copynumber: 1.9 Consensus size: 86
56368553 GGCCCTTCGT
* * * *
56368563 CGTGCGAGAGCCTCAGG-CACCATCGGC-ACCTTGGTGGCTTGGATGTGCGGGAGCCTTGAGCAG
1 CGTGCGAGAGCCTC-GGACACCATCGGCAACCTTAGT-GCTTGGATGTGCCGGAGCCTCGAGCAC
56368626 CATGGGCACCTTGGTGGCTCAGA
64 CATGGGCACCTTGGTGGCTCAGA
* *
56368649 CGTGCGGGAGCCTCGGACACCATTGGCAACCTTAGTGCTTGGATGTGCCGGAGCCTCGAGCACCA
1 CGTGCGAGAGCCTCGGACACCATCGGCAACCTTAGTGCTTGGATGTGCCGGAGCCTCGAGCACCA
*
56368714 TTGGCACCTTGGTG
66 TGGGCACCTTGGTG
56368728 CCTGGGATGT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
85 2 0.03
86 61 0.87
87 7 0.10
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (86 bp):
CGTGCGAGAGCCTCGGACACCATCGGCAACCTTAGTGCTTGGATGTGCCGGAGCCTCGAGCACCA
TGGGCACCTTGGTGGCTCAGA
Found at i:56375551 original size:43 final size:43
Alignment explanation
Indices: 56375485--56375619 Score: 189
Period size: 43 Copynumber: 3.1 Consensus size: 43
56375475 CTCCGCACTG
* **
56375485 TCGGCACCTTGGTGGCTCGGATGTGTGGGATCCTCGAGCAGTA
1 TCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCA
*
56375528 TCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCACCA
1 TCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCA
* * ** *
56375571 TCGGTACCTTGGTGGGTCGGATGTGCAGGAGCCCCGAGCACCA
1 TCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCA
56375614 TCGGCA
1 TCGGCA
56375620 ACTTTGGCCC
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 81 1.00
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (43 bp):
TCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCA
Found at i:56376070 original size:43 final size:43
Alignment explanation
Indices: 56376022--56376222 Score: 181
Period size: 42 Copynumber: 4.7 Consensus size: 43
56376012 AGAGCCTCCA
*
56376022 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCG
1 GCACCTTGGTGGCTCGGATGTGCGAGAGCCTCGAACACCATCG
* * * * * * *
56376065 GCACCTTGGTGCCTCAGATGAGGGGGAGCCTCGAGCACTATCG
1 GCACCTTGGTGGCTCGGATGTGCGAGAGCCTCGAACACCATCG
* * * * * * * *
56376108 GTACCTTGGT-GCTTGAATGTGCGAGAGGCTCGAGCACAACCA
1 GCACCTTGGTGGCTCGGATGTGCGAGAGCCTCGAACACCATCG
* * * * *
56376150 GTACCTTTGT-GCTTGTATGTGCGAGAGCCTCGAGCACCATCG
1 GCACCTTGGTGGCTCGGATGTGCGAGAGCCTCGAACACCATCG
* *
56376192 GCACGTTCGTGGCTCGGATGTGCGAGAGCCT
1 GCACCTTGGTGGCTCGGATGTGCGAGAGCCT
56376223 TTGACACCAT
Statistics
Matches: 128, Mismatches: 29, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
42 64 0.50
43 64 0.50
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (43 bp):
GCACCTTGGTGGCTCGGATGTGCGAGAGCCTCGAACACCATCG
Found at i:56376416 original size:43 final size:43
Alignment explanation
Indices: 56376363--56377327 Score: 333
Period size: 42 Copynumber: 22.5 Consensus size: 43
56376353 GGCGCTCGGA
* * *
56376363 TGTGCAAGAGCTTCGGATACCATCGGTAACCTAGGCCCTTGGT
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * *
56376406 TGTGCGAGAGCCTCGGGCACCATCGGT-ACCTAGGCACTTGGA
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * * * * * *
56376448 TGTGTGGGAGCCTCAGAAACCATCGGCAAACTAGGCCATTGGT
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
*
56376491 CTTTGC-AGGAGCCTCGTG-CACCATCGGCT-ACCTAGGCCCTTGGT
1 -TGTGCGA-GAGCCTCG-GACACCATCGG-TAACCTAGGCCCTTGGT
* * * * ** *
56376535 CGTGCGGGAGCCTC-GAGCACTATC-G-ACACCTTGGTGCTTGGA
1 TGTGCGAGAGCCTCGGA-CACCATCGGTA-ACCTAGGCCCTTGGT
* * *
56376577 TGTGCGGGAACCTCGAACACCATC-GTCAACCTAGGCCCTTGGT
1 TGTGCGAGAGCCTCGGACACCATCGGT-AACCTAGGCCCTTGGT
* * * ** *
56376620 CGTGCGAGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTGGA
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * ** *
56376662 TGTG-GGGAGCCTTGGACAGTATCGGCAAACC-AGGCCCTTGGTGCTT
1 TGTGCGAGAGCCTCGGACACCATCGG-TAACCTAGGCCCTT-G-G--T
* * * ** *
56376708 GGATGTGCGGGAGCCTCGGGCACCATAGGTAAAATATGCCCTTGGT
1 ---TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * * * * ** *
56376754 CGTGCGAGAGCCTCAGCCACCATTGG-GACCTAGGTGCTTGGA
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
** *
56376796 TGTGCGAGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGT
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * * ** * *
56376839 CGTTCGGGAGCCTCGGGTATCATCGGCAACCTAGGCCCTTGGT
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * * * * * * * *
56376882 CGTGCGAGAACCTCGGGCACCATCAG-CACCTGGGCGCTCGGA
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * * * * * * *
56376924 TGTGGGGGGGCGTCGGACACCATTGGCAAACAAGGCCCTTGGT
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * * * * * * ** * *
56376967 CGTGCGGGAGCCTCGGGCAACAAT-AG-CACCTTGG-TGTTATGA
1 TGTGCGAGAGCCTCGGAC-ACCATCGGTAACCTAGGCCCTT-GGT
* *** * *
56377009 TGTGCAAGAGCCTCGGACAATGTCGGCATCCTAGGCCCTTGGT
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * * * ** *
56377052 CGTGCGGGAGCCTC-AAGCACCATC-G-ACACCTTGGTGCTTGGA
1 TGTGCGAGAGCCTCGGA-CACCATCGGTA-ACCTAGGCCCTTGGT
* * * * *
56377094 TGTGCG-GAACCTCAGACACCGTCGGCAACCTAGGCCCTGGGT
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * * * ** * *
56377136 CGTGCGAGAGCCTTGGGCACCATCGG-CACCTAGGGGCTCGGA
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * ** * *
56377178 TGTACGAGAGGCTTTGACACCATCGGTAAACTAAGCCCTTGGT
1 TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
** * * * * * ** * *
56377221 CT-CCCGGGAGCCTCGGGCACCATCAG-CACCTCGGTGCTTTGA
1 -TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
* * * *
56377263 TGTGCGGGAGCCTCGGGCACCATCGGTAGA-ATAGGCCCTT-CT
1 TGTGCGAGAGCCTCGGACACCATCGGTA-ACCTAGGCCCTTGGT
* * *
56377305 CGTGTGAGAGCCTCGGGCACCAT
1 TGTGCGAGAGCCTCGGACACCAT
56377328 TGGCACCTCG
Statistics
Matches: 651, Mismatches: 228, Indels: 87
0.67 0.24 0.09
Matches are distributed among these distances:
41 35 0.05
42 279 0.43
43 262 0.40
44 42 0.06
45 1 0.00
46 1 0.00
48 1 0.00
49 7 0.01
50 23 0.04
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (43 bp):
TGTGCGAGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGT
Found at i:56376505 original size:44 final size:43
Alignment explanation
Indices: 56376454--56376549 Score: 104
Period size: 44 Copynumber: 2.2 Consensus size: 43
56376444 TGGATGTGTG
*
56376454 GGAGCCTCAG-AAACCATCGGCAAACTAGGCCATTGGTCTTTGCA
1 GGAGCCTC-GTAAACCATCGGCAAACTAGGCCATTGGTC-GTGCA
** * * * *
56376498 GGAGCCTCGTGCACCATCGGCTACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGTAAACCATCGGCAAACTAGGCCATTGGTCGTGCA
56376541 GGAGCCTCG
1 GGAGCCTCG
56376550 AGCACTATCG
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
43 13 0.30
44 31 0.70
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (43 bp):
GGAGCCTCGTAAACCATCGGCAAACTAGGCCATTGGTCGTGCA
Found at i:56376611 original size:129 final size:128
Alignment explanation
Indices: 56376381--56377169 Score: 387
Period size: 128 Copynumber: 6.1 Consensus size: 128
56376371 AGCTTCGGAT
* * **
56376381 ACCATCGG-TAACCTAGGCCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGTACCTAGGCACTT
1 ACCATCGGCT-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACACCTAGGCACTT
* * * *
56376445 GGATGTGTGGGAGCCTCAGAAACCATCGGCAAACTAGGCCATTGGTCTTTGC-AGGAGCCTCGTG
65 GGATGTGCGGGAACCTCAGAAACCATCGGCAAACTAGGCCATTGGTC-GTGCGA-GAGCCTCGGG
56376509 C
128 C
* * * **
56376510 ACCATCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACTATCGACACCTTGGTGCTTG
1 ACCATCGGCTACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACACCTAGGCACTTG
* * *
56376575 GATGTGCGGGAACCTC-GAACACCATCGTCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGC
66 GATGTGCGGGAACCTCAGAA-ACCATCGGCAAACTAGGCCATTGGTCGTGCGAGAGCCTCGGGC
** * * **
56376638 ACCATCGGC-ACCTAGGTGCTTGGAT-GTG-GGGAGCCTTG-GACAGTATCGGCAAACCAGGCCC
1 ACCATCGGCTACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAG-CACCATC-G---A-CA---CC
* ** * * ** * * * * *
56376699 TTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATAGGTAAAATATGCCCTTGGTCGTGCGAGAG
56 TAGGCACTTGGATGTGCGGGAACCTCAGAAACCATCGGCAAACTAGGCCATTGGTCGTGCGAGAG
* *
56376764 CCTCAGCC
121 CCTCGGGC
* * ** * *
56376772 ACCATTGG-GACCTAGGTGCTTGGAT-GTGCGAGAGCCTCG-GACACCATCGACAAACTAGGCCC
1 ACCATCGGCTACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAG-CACCATCGAC-ACCTAGGCAC
* * * ** * * * *
56376834 TTGG-TCGTTCGGGAGCCTCGGGTATCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGG
63 TTGGAT-GTGCGGGAACCTCAGAAACCATCGGCAAACTAGGCCATTGGTCGTGCGAGAGCCTCGG
56376898 GC
127 GC
* * * * * * * * * * * * *
56376900 ACCATCAGC-ACCTGGGCGCTCGGAT-GTGGGGGGGCGTCG-GACACCATTGGCAAACAAGGCCC
1 ACCATCGGCTACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAG-CACCATCGAC-ACCTAGGCAC
* * * * * * * *** * *
56376962 TTGG-TCGTGCGGGAGCCTCGGGCAACAAT-AGC-ACCTTGGTGTTATGAT-GTGCAAGAGCCTC
63 TTGGAT-GTGCGGGAACCTC-AGAAACCATCGGCAAACTAGGCCAT-TGGTCGTGCGAGAGCCTC
*
56377023 GGAC
125 GGGC
*** * * * **
56377027 AATGTCGGC-ATCCTAGGCCCTTGGTCGTGCGGGAGCCTCAAGCACCATCGACACCTTGGTGCTT
1 ACCATCGGCTA-CCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACACCTAGGCACTT
* * * * * *
56377091 GGATGTGC-GGAACCTCAGACACCGTCGGCAACCTAGGCCCTGGGTCGTGCGAGAGCCTTGGGC
65 GGATGTGCGGGAACCTCAGAAACCATCGGCAAACTAGGCCATTGGTCGTGCGAGAGCCTCGGGC
56377154 ACCATCGGC-ACCTAGG
1 ACCATCGGCTACCTAGG
56377170 GGCTCGGATG
Statistics
Matches: 518, Mismatches: 114, Indels: 59
0.75 0.16 0.09
Matches are distributed among these distances:
125 5 0.01
126 32 0.06
127 86 0.17
128 185 0.36
129 98 0.19
130 3 0.01
131 4 0.01
134 89 0.17
135 16 0.03
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (128 bp):
ACCATCGGCTACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACACCTAGGCACTTG
GATGTGCGGGAACCTCAGAAACCATCGGCAAACTAGGCCATTGGTCGTGCGAGAGCCTCGGGC
Found at i:56376614 original size:85 final size:85
Alignment explanation
Indices: 56376498--56377540 Score: 654
Period size: 85 Copynumber: 12.2 Consensus size: 85
56376488 GGTCTTTGCA
** * * * *
56376498 GGAGCCTCGTGCACCATCGGCTACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACTATCGACA
1 GGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACA
56376563 CCTTGGTGCTTGGATGTGCG
66 CCTTGGTGCTTGGATGTGCG
* * *
56376583 GGAACCTCGAACACCATCGTCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACA
*
56376648 CCTAGGTGCTTGGATGTG-G
66 CCTTGGTGCTTGGATGTGCG
* * ** *
56376667 GGAGCCTTGGACAGTATCGGCAAACC-AGGCCCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCAC
1 GGAGCCTCGAACACCATCGGC-AACCTAGGCCCTTGGT-C------GTGCGAGAGCCTCGGGCAC
* ** **
56376731 CATAGGTA-AAATAT-GCCCTTGG-TCGTGCG
58 CAT-CG-ACACCT-TGGTGCTTGGAT-GTGCG
* * * * ** *
56376760 AGAGCCTC-AGCCACCATTGG-GACCTAGGTGCTTGGAT-GTGCGAGAGCCTCGGACACCATCGA
1 GGAGCCTCGA-ACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGA
* * ** *
56376822 CAAACTAGGCCCTTGG-TCGTTCG
64 C-ACCTTGGTGCTTGGAT-GTGCG
*** * *
56376845 GGAGCCTCGGGTATCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGGGCACCATC-AGC
1 GGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGA-C
* * * *
56376909 ACCTGGGCGCTCGGATGTGGG
65 ACCTTGGTGCTTGGATGTGCG
* * * * * * * * *
56376930 GGGGCGTCGGACACCATTGGCAAACAAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAACAATAG-C
1 GGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGC-ACCATCGAC
* *
56376994 ACCTTGGTG-TTATGATGTGCA
65 ACCTTGGTGCTT-GGATGTGCG
* * *** * * **
56377015 AGAGCCTCGGACAATGTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGCCTCAAGCACCATCGACA
1 GGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACA
56377080 CCTTGGTGCTTGGATGTGC-
66 CCTTGGTGCTTGGATGTGCG
* * * * *
56377099 GGAACCTC-AGACACCGTCGGCAACCTAGGCCCTGGGTCGTGCGAGAGCCTTGGGCACCATCGGC
1 GGAGCCTCGA-ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAC
* * * *
56377163 ACCTAGGGGCTCGGATGTACG
65 ACCTTGGTGCTTGGATGTGCG
* * * * * * * *
56377184 AGAGGCTTTG-ACACCATCGGTAAACTAAGCCCTTGGTC-TCCCGGGAGCCTCGGGCACCATC-A
1 GGA-GCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGT-GCGAGAGCCTCGGGCACCATCGA
* *
56377246 GCACCTCGGTGCTTTGATGTGCG
64 -CACCTTGGTGCTTGGATGTGCG
** * * * * * *
56377269 GGAGCCTCGGGCACCATCGGTAGA-ATAGGCCCTT-CTCGTGTGAGAGCCTCGGGCACCATTGGC
1 GGAGCCTCGAACACCATCGGCA-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAC
* ** * *
56377332 ACCTCGGTGCTCAGATGTCCA
65 ACCTTGGTGCTTGGATGTGCG
* * * * * * * *
56377353 GGAGCCTCGAGCATCGTGGGCAGA-ATAGGCCCTTTGTCGTGCGAGAGCGTCGGGCACCATCGGC
1 GGAGCCTCGAACACCATCGGCA-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAC
*
56377417 ACCTTGGTGGCTCGGATGTGCG
65 ACCTTGGT-GCTTGGATGTGCG
* * * * ** * * * *
56377439 GGAGCCTCGAGCAGCATGGGC-ACCTTGGTGGCTCGGAT-GTGCGGGAGCCTCGGACACCATCGG
1 GGAGCCTCGAACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGA
56377502 CAACCTTGGTGCTTGGATGTGCG
64 C-ACCTTGGTGCTTGGATGTGCG
*
56377525 GGAGCCTCGAGCACCA
1 GGAGCCTCGAACACCA
56377541 CCAGCAACTT
Statistics
Matches: 747, Mismatches: 166, Indels: 89
0.75 0.17 0.09
Matches are distributed among these distances:
83 1 0.00
84 173 0.23
85 379 0.51
86 126 0.17
87 9 0.01
91 25 0.03
92 20 0.03
93 14 0.02
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (85 bp):
GGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACA
CCTTGGTGCTTGGATGTGCG
Found at i:56376818 original size:219 final size:214
Alignment explanation
Indices: 56376342--56376880 Score: 600
Period size: 219 Copynumber: 2.5 Consensus size: 214
56376332 TTCAGACACA
* * * * * * *
56376342 ATCGGCACCTGGGCGCTCGGATGTGCAAGAGCTTCGGATACCATCGGT-AACCTAGGCCCTTGGT
1 ATCGACACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATC-GTCAACCTAGGCCCTTGGT
* *
56376406 TGTGCGAGAGCCTCGGGCACCATCGGTACCTAGGCACTTGGATGTGTGGGAGCCTCAGAAACCAT
65 CGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCACTTGGATGTGTGGGAGCCTCAGAAACCAT
* * * **
56376471 CGGCAAACTAGGCCATTGGTCTTTGCAGGAGCCTCGTGCACCATCGGCTACCTAGGCCCTTGGTC
130 CGGCAAACCAGGCCATTGGTCTTTGCAGGAGCCTCGGGCACCATAGGCTAAATAGGCCCTTGGTC
* *
56376536 GTGCGGGAGCCTCGAGCACT
195 GTGCGAGAGCCTCGAGCACC
* * * *
56376556 ATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCGAACACCATCGTCAACCTAGGCCCTTGGTC
1 ATCGACACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGTCAACCTAGGCCCTTGGTC
** ** * **
56376621 GTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTG-GGGAGCCTTGGACAGTATC
66 GTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCACTTGGATGTGTGGGAGCCTCAGAAACCATC
* * *
56376685 GGCAAACCAGGCCCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATAGG-TAAAATATGCCC
131 GGCAAACCAGGCCATTGGT-C-T---T-TGCAGGAGCCTCGGGCACCATAGGCT-AAATAGGCCC
56376749 TTGGTCGTGCGAGAGCCTC-AGCCACC
189 TTGGTCGTGCGAGAGCCTCGAG-CACC
* ** * *
56376775 ATTGGGACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTC
1 ATCGACACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGTCAACCTAGGCCCTTGGTC
* * * * *
56376840 GTTCGGGAGCCTCGGGTATCATCGGCAACCTAGGCCCTTGG
66 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCACTTGG
56376881 TCGTGCGAGA
Statistics
Matches: 271, Mismatches: 44, Indels: 14
0.82 0.13 0.04
Matches are distributed among these distances:
213 33 0.12
214 94 0.35
215 1 0.00
218 4 0.01
219 127 0.47
220 12 0.04
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (214 bp):
ATCGACACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGTCAACCTAGGCCCTTGGTC
GTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCACTTGGATGTGTGGGAGCCTCAGAAACCATC
GGCAAACCAGGCCATTGGTCTTTGCAGGAGCCTCGGGCACCATAGGCTAAATAGGCCCTTGGTCG
TGCGAGAGCCTCGAGCACC
Found at i:56376903 original size:128 final size:127
Alignment explanation
Indices: 56376466--56377288 Score: 492
Period size: 128 Copynumber: 6.4 Consensus size: 127
56376456 AGCCTCAGAA
* * * * **
56376466 ACCATCGGCAAACTAGGCCATTGGTCTTTGC-AGGAGCCTCGTGCACCATCGGCTACCTAGGCCC
1 ACCATCGGCAACCTAGGCCCTTGGTC-GTGCGA-GAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* * * ** ** * *
56376530 TTGG-TCGTGCGGGAGCCTC-GAGCACTATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAACCTC
63 TTGGAT-GTG-GGGAGCCTCGGA-CACCATCGGCAAACAAGGCCCTTGG-TCGTTCGGGAGCCTC
**
56376591 GAAC
124 GGGC
*
56376595 ACCATCGTCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG
1 ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG
* ** *
56376660 GATGTGGGGAGCCTTGGACAGTATCGGCAAACCAGGCCCTTGGTGCTTGGATGTGCGGGAGCCTC
66 GATGTGGGGAGCCTCGGACACCATCGGCAAACAAGGCCCTTGGT-C---G-T-T-CGGGAGCCTC
56376725 GGGC
124 GGGC
* * ** * * * * *
56376729 ACCATAGGTAAAATATGCCCTTGGTCGTGCGAGAGCCTCAGCCACCATTGGGACCTAGGTGCTTG
1 ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG
* * * *
56376794 GATGTGCGAGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTTCGGGAGCCTCGGGT
66 GATGTG-GGGAGCCTCGGACACCATCGGCAAACAAGGCCCTTGGTCGTTCGGGAGCCTCGGGC
* * * * * *
56376857 ATCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGGGCACCATCAGCACCTGGGCGCTCG
1 ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG
* * * *
56376922 GATGTGGGGGGGCGTCGGACACCATTGGCAAACAAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
66 GATGT-GGGGAGCCTCGGACACCATCGGCAAACAAGGCCCTTGGTCGTTCGGGAGCCTCGGGC
* * * *** * * * *** **
56376985 AACAAT-AGC-ACCTTGGTGTTATGAT-GTGCAAGAGCCTCGGACAATGTCGGCATCCTAGGCCC
1 -ACCATCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATCGGCA-CCTAGGTGC
* * * ** ** * *
56377047 TTGG-TCGTGCGGGAGCCTC-AAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGC-GGAACCTC
63 TTGGAT-GTG-GGGAGCCTCGGA-CACCATCGGCAAACAAGGCCCTTGG-TCGTTCGGGAGCCTC
* *
56377107 AGAC
124 GGGC
* * * * *
56377111 ACCGTCGGCAACCTAGGCCCTGGGTCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGGGCTCG
1 ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG
* * * ** * *
56377176 GATGTACGAGAGGCTTTGACACCATCGGTAAACTAA-GCCCTTGGTC-TCCCGGGAGCCTCGGGC
66 GATGT-GGGGAGCCTCGGACACCATCGGCAAAC-AAGGCCCTTGGTCGT-TCGGGAGCCTCGGGC
* * * * * *
56377239 ACCATCAGC-ACCTCGGTGCTTTGAT-GTGCGGGAGCCTCGGGCACCATCGG
1 ACCATCGGCAACCTAGG-CCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
56377289 TAGAATAGGC
Statistics
Matches: 528, Mismatches: 133, Indels: 68
0.72 0.18 0.09
Matches are distributed among these distances:
125 3 0.01
126 58 0.11
127 137 0.26
128 192 0.36
129 29 0.05
130 1 0.00
131 2 0.00
132 1 0.00
134 73 0.14
135 32 0.06
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (127 bp):
ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG
GATGTGGGGAGCCTCGGACACCATCGGCAAACAAGGCCCTTGGTCGTTCGGGAGCCTCGGGC
Found at i:56377141 original size:42 final size:42
Alignment explanation
Indices: 56377030--56377141 Score: 95
Period size: 41 Copynumber: 2.7 Consensus size: 42
56377020 CTCGGACAAT
* * *
56377030 GTCGGCATCCTAGGCCCTTGGTCGTGCGGGAGCCTCAAGCACC
1 GTCGGCAACCTAGGCCCTGGGTCGTGC-GGAACCTCAAGCACC
* * * * * *
56377073 ATCGAC-ACCTTGGTGCTTGGAT-GTGCGGAACCTC-AGACACC
1 GTCGGCAACCTAGG-CCCTGGGTCGTGCGGAACCTCAAG-CACC
56377114 GTCGGCAACCTAGGCCCTGGGTCGTGCG
1 GTCGGCAACCTAGGCCCTGGGTCGTGCG
56377142 AGAGCCTTGG
Statistics
Matches: 50, Mismatches: 15, Indels: 9
0.68 0.20 0.12
Matches are distributed among these distances:
40 2 0.04
41 20 0.40
42 20 0.40
43 8 0.16
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (42 bp):
GTCGGCAACCTAGGCCCTGGGTCGTGCGGAACCTCAAGCACC
Found at i:56377231 original size:169 final size:169
Alignment explanation
Indices: 56377043--56377349 Score: 379
Period size: 169 Copynumber: 1.8 Consensus size: 169
56377033 GGCATCCTAG
* *
56377043 GCCCTTGGTCGTGCGGGAGCCTCAAGCACCATC-GACACCTTGGTGCTTGGATGTGC-GGAACCT
1 GCCCTTGGTCGTCCGGGAGCCTCAAGCACCATCAG-CACCTCGGTGCTTGGATGTGCGGGAACCT
* * * *
56377106 CAGACACCGTCGGCA-ACCTAGGCCCTGGGTCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGG
65 CAGACACCATCGGCAGA-ATAGGCCCT-GCTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGG
*
56377170 GGCTCGGATGTACGAGAGGCTTTGACACCATCGGTAAACTAA
128 GGCTCAGATGTACGAGAGGCTTTGACACCATCGGTAAACTAA
** * *
56377212 GCCCTTGGTC-TCCCGGGAGCCTCGGGCACCATCAGCACCTCGGTGCTTTGATGTGCGGGAGCCT
1 GCCCTTGGTCGT-CCGGGAGCCTCAAGCACCATCAGCACCTCGGTGCTTGGATGTGCGGGAACCT
* * * * * * * *
56377276 CGGGCACCATCGGTAGAATAGGCCCTTCTCGTGTGAGAGCCTCGGGCACCATTGGCACCTCGGTG
65 CAGACACCATCGGCAGAATAGGCCCTGCTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGGG
56377341 CTCAGATGT
130 CTCAGATGT
56377350 CCAGGAGCCT
Statistics
Matches: 115, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
168 1 0.01
169 87 0.76
170 26 0.23
171 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.20
Consensus pattern (169 bp):
GCCCTTGGTCGTCCGGGAGCCTCAAGCACCATCAGCACCTCGGTGCTTGGATGTGCGGGAACCTC
AGACACCATCGGCAGAATAGGCCCTGCTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGGGC
TCAGATGTACGAGAGGCTTTGACACCATCGGTAAACTAA
Found at i:56377284 original size:42 final size:42
Alignment explanation
Indices: 56376697--56377565 Score: 299
Period size: 43 Copynumber: 20.4 Consensus size: 42
56376687 CAAACCAGGC
* *
56376697 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATAGGTAA
1 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CA
** ** * * * * *
56376740 AATAT-GCCCTTGG-TCGTGCGAGAGCCTCAGCCACCATTGGGA
1 CCT-TGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
* * * *
56376782 CCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGACAA
1 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-A
* * ** * * *
56376825 ACTAGGCCCTTGG-TCGTTCGGGAGCCTCGGGTATCATCGGCAA
1 CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGC-A
* ** * * *
56376868 CCTAGGCCCTTGG-TCGTGCGAGAACCTCGGGCACCATCAGCA
1 CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
* * * * * * * *
56376910 CCTGGGCGCTCGGATGTGGGGGGGCGTCGGACACCATTGGCAA
1 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-A
* ** ** * *
56376953 ACAAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAACAAT-AGCA
1 CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGC-ACCATCGGCA
* ** * ***
56376995 CCTTGGTG-TTATGATGTGCAAGAGCCTCGGACAATGTCGGCA
1 CCTTGGTGCTT-GGATGTGCGGGAGCCTCGGGCACCATCGGCA
* ** ** *
56377037 TCCTAGGCCCTTGG-TCGTGCGGGAGCCTCAAGCACCATCGACA
1 -CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
* * * *
56377080 CCTTGGTGCTTGGATGTGC-GGAACCTCAGACACCGTCGGCAA
1 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-A
* * * * * *
56377122 CCTAGG-CCCTGGGTCGTGCGAGAGCCTTGGGCACCATCGGCA
1 CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
* * * * * * ** * *
56377164 CCTAGGGGCTCGGATGTACGAGAGGCTTTGACACCATCGGTAA
1 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CA
* ** ** * * *
56377207 ACTAAGCCCTTGG-TCTCCCGGGAGCCTCGGGCACCATCAGCA
1 CCTTGGTGCTTGGATGT-GCGGGAGCCTCGGGCACCATCGGCA
* * *
56377249 CCTCGGTGCTTTGATGTGCGGGAGCCTCGGGCACCATCGGTA
1 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCA
** * ** * * * *
56377291 GAATAGGCCCTT--CTCGTGTGAGAGCCTCGGGCACCATTGGCA
1 -CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
* ** * * * * * *
56377333 CCTCGGTGCTCAGATGTCCAGGAGCCTCGAGCATCGTGGGCA
1 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCA
** * ** * * *
56377375 GAATAGGCCCTTTG-TCGTGCGAGAGCGTCGGGCACCATCGGCA
1 -CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
* * * *
56377418 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATGGGCA
1 CCTTGGT-GCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCA
* *
56377461 CCTTGGTGGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAA
1 CCTTGGT-GCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-A
* * *
56377505 CCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCACCAGCA
1 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCA
* *
56377547 ACTTGGTGCCTGGGATGTG
1 CCTTGGTG-CTTGGATGTG
56377566 TGGGCTAAAG
Statistics
Matches: 595, Mismatches: 197, Indels: 68
0.69 0.23 0.08
Matches are distributed among these distances:
41 31 0.05
42 222 0.37
43 326 0.55
44 16 0.03
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (42 bp):
CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCA
Found at i:56377384 original size:254 final size:253
Alignment explanation
Indices: 56376861--56377435 Score: 608
Period size: 254 Copynumber: 2.3 Consensus size: 253
56376851 TCGGGTATCA
* * *
56376861 TCGGCAACCTAGGCCCTTGGTCGTGCGAGAACCTCGGGCACCATCAGCACCTGGGCGCTCGGATG
1 TCGGCAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGG-GCTCGGATG
* * * * *
56376926 TGGGGGGGCGTCGGACACCATTGGCAAACAAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAACAAT
65 TCGAGAGGCGTCGGACACCATCGGCAAACAAGGCCCTTGGTCGTCCGGGAGCCTCGGGCAACAAT
* ** *** *
56376991 AGCACCTTGGTGTTATGATGTGCAAGAGCCTCGGACAATGTCGGCATCCTAGGCCCTTGGTCGTG
130 AGCACCTCGGTGTTATGATGTGCAAGAGCCTCGGACAACATCGGCAGAATAGGCCCTTGCTCGTG
* * ** *
56377056 CGGGAGCCTCAAGCACCATCGACACCTTGGTGCTTGGATGTGCGGAACCTCAGACACCG
195 CGAGAGCCTCAAGCACCATCGACACCTCGGTGCTCAGATGTCCGGAACCTCAGACACCG
* * *
56377115 TCGGCAACCTAGGCCCTGGGTCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGGGCTCGGATG
1 TCGGCAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGGGCTCGGATG
** *
56377180 TACGAGAGGC-TTTGACACCATCGGTAAACTAA-GCCCTTGGTC-TCCCGGGAGCCTCGGGC-AC
65 T-CGAGAGGCGTCGGACACCATCGGCAAAC-AAGGCCCTTGGTCGT-CCGGGAGCCTCGGGCAAC
* ** * * *
56377241 CATCAGCACCTCGGTGCTT-TGATGTGCGGGAGCCTCGGGCACCATCGGTAGAATAGGCCCTT-C
127 AAT-AGCACCTCGGTG-TTATGATGTGCAAGAGCCTCGGACAACATCGGCAGAATAGGCCCTTGC
* ** * * * *
56377304 TCGTGTGAGAGCCTCGGGCACCATTGGCACCTCGGTGCTCAGATGTCCAGGAGCCTC-GAGCATC
190 TCGTGCGAGAGCCTCAAGCACCATCGACACCTCGGTGCTCAGATGTCC-GGAACCTCAGA-CACC
56377368 G
253 G
* * *
56377369 TGGGCAGA-ATAGGCCCTTTGTCGTGCGAGAGCGTCGGGCACCATCGGCACCTTGGTGGCTCGGA
1 TCGGCA-ACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC-TGG-GGCTCGGA
56377433 TGT
63 TGT
56377436 GCGGGAGCCT
Statistics
Matches: 267, Mismatches: 43, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
253 45 0.17
254 197 0.74
255 25 0.09
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (253 bp):
TCGGCAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGGCTCGGATGT
CGAGAGGCGTCGGACACCATCGGCAAACAAGGCCCTTGGTCGTCCGGGAGCCTCGGGCAACAATA
GCACCTCGGTGTTATGATGTGCAAGAGCCTCGGACAACATCGGCAGAATAGGCCCTTGCTCGTGC
GAGAGCCTCAAGCACCATCGACACCTCGGTGCTCAGATGTCCGGAACCTCAGACACCG
Found at i:56380764 original size:16 final size:16
Alignment explanation
Indices: 56380743--56380791 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
56380733 TTTGCTGTAT
56380743 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
* *
56380759 TGGAATAGAAGTGTAA
1 TGGAATAGAGGCGTAA
56380775 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
56380791 T
1 T
56380792 AGCAAATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.39, C:0.04, G:0.35, T:0.22
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:56393210 original size:15 final size:14
Alignment explanation
Indices: 56393190--56393220 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
56393180 TCCGGTGAGG
56393190 ATTGATCAAAGAAGC
1 ATTGATCAAAG-AGC
56393205 ATTGATCAAAGAGC
1 ATTGATCAAAGAGC
56393219 AT
1 AT
56393221 GATTAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (14 bp):
ATTGATCAAAGAGC
Found at i:56398911 original size:43 final size:43
Alignment explanation
Indices: 56398824--56398915 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
56398814 CTCTACACTG
* * * * *
56398824 TCGGCACCTTGGTGGCTGGGATGTGCGGGAGCCTCGAGAGCCA
1 TCGGCACCTTGGTGCCTCGGATGTGCGAGAGCCCCAAGAGCCA
*
56398867 TCGGTACCTTGGTGCCTCGGATGTGCGAGAGCCCCAAGCA-CCA
1 TCGGCACCTTGGTGCCTCGGATGTGCGAGAGCCCCAAG-AGCCA
56398910 TCGGCA
1 TCGGCA
56398916 ACTTTGGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 40 0.98
44 1 0.02
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.18
Consensus pattern (43 bp):
TCGGCACCTTGGTGCCTCGGATGTGCGAGAGCCCCAAGAGCCA
Found at i:56399505 original size:42 final size:42
Alignment explanation
Indices: 56399383--56399562 Score: 134
Period size: 43 Copynumber: 4.2 Consensus size: 42
56399373 AGCCTCCAGC
* * *
56399383 ACCTTGGTGGCTCAGATGTGCGGGAGCCT-GGAACACCACCGGA
1 ACCTTGGTGGCTTAGATGTACGGGAGCCTCGG--CACCATCGGA
* * * *
56399426 ACCTTGGTGGCTAAGATG-AGGGGGAGCCTCAAGCACCATCGGC
1 ACCTTGGTGGCTTAGATGTA-CGGGAGCCTC-GGCACCATCGGA
*
56399469 ACCTTGGT-GCTTAGATGTACTGGAGCCTCGGCCACCATCGGTA
1 ACCTTGGTGGCTTAGATGTACGGGAGCCTCGG-CACCATCGG-A
* * * * ** *
56399512 ACCTTGGT-GCTTGGATGTGCGAGAGGCTCGAGCATAATCGGT
1 ACCTTGGTGGCTTAGATGTACGGGAGCCTCG-GCACCATCGGA
56399554 ACCTTGGTG
1 ACCTTGGTG
56399563 CTTGGAGAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 33 0.30
43 74 0.67
44 1 0.01
45 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.22
Consensus pattern (42 bp):
ACCTTGGTGGCTTAGATGTACGGGAGCCTCGGCACCATCGGA
Found at i:56399529 original size:43 final size:42
Alignment explanation
Indices: 56399449--56399568 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 42
56399439 AGATGAGGGG
* * *
56399449 GAGCCTCAAGCACCATCGGCACCTTGGTGCTTAGATGTACTG-
1 GAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGATGTAC-GA
*
56399491 GAGCCTCG-GCCACCATCGGTAACCTTGGTGCTTGGATGTGCGA
1 GAGCCTCGAG-CACCATCGGT-ACCTTGGTGCTTGGATGTACGA
* **
56399534 GAGGCTCGAGCATAATCGGTACCTTGGTGCTTGGA
1 GAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGA
56399569 GAAAAACTGG
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
41 1 0.01
42 32 0.48
43 33 0.49
44 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (42 bp):
GAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGATGTACGA
Found at i:56400276 original size:24 final size:24
Alignment explanation
Indices: 56400244--56400310 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
56400234 AGGTTCCTGG
*
56400244 CGGTGCTCCGGTGATCCATCCCAA
1 CGGTGCTCCGGTGAACCATCCCAA
* *
56400268 CGGTGCTCCGGTGAACCGTCCCAG
1 CGGTGCTCCGGTGAACCATCCCAA
56400292 CGGTGCTCCGGTGAACCAT
1 CGGTGCTCCGGTGAACCAT
56400311 TCCGGCAGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.19
Consensus pattern (24 bp):
CGGTGCTCCGGTGAACCATCCCAA
Found at i:56400472 original size:85 final size:85
Alignment explanation
Indices: 56400321--56401581 Score: 753
Period size: 85 Copynumber: 14.8 Consensus size: 85
56400311 TCCGGCAGCA
* * * * * * **
56400321 TAGGCCTTTGGTCGTACGGGAGCCTCGGGCCCCATCGGCACCTTGGTG-TTAGGATGTGAGCAAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT-GGATGTGCGGGAG
*
56400385 CCTCGAACACCATCGACAACC
65 CCTCGGACACCATCGACAACC
* *
56400406 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACTTAGGTGCTTGGATGTGTGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
*
56400471 CTCGGACACCATCGACAAAC
66 CTCGGACACCATCGACAACC
* * ** * * *
56400491 TAGGCCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGG-TCGTGTGAGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTGGAT-GTGCGGGA
* *
56400555 GCCTCGGGCACCAAC-AGC-ACC
64 GCCTCGGACACCATCGA-CAACC
* * * * * * * * ** *
56400576 TGGGCGCTCGAAT-GTACGGGAGCCTCGGACACCATCAGCAACCTAGGCCCTTGG-TCGTGCGAG
1 TAGGCCCTTG-GTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGG
**
56400639 AGCCTCTGG-CACCATCG-GTACC
63 AGCCTC-GGACACCATCGACAACC
* * * * * * ** * *
56400661 TAGGCACTCGGAT-GTGCG-GAAGCCTCGGACACCATCGGTAAACTAAGCCCGTGG-TCGTACGG
1 TAGGCCCTTGG-TCGTGCGAG-AGCCTCGGGCACCATCGG-CACCTAGGTGCTTGGAT-GTGCGG
** * * *
56400723 GAGCCTCGGGTACTATCGGC-ACT
62 GAGCCTCGGACACCATCGACAACC
* ** * * * * ** * ** *
56400746 TGGGTACTCGGAT-GTGCGGGAGCGTCGGACACCATCCGTAAACTAGGCCCTTGG-TCTTGCGGG
1 TAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCAT-CGGCACCTAGGTGCTTGGAT-GTGCGGG
* *
56400809 AGCCTCGCG-CACCATCGGCTACC
63 AGCCTCG-GACACCATCGACAACC
* * * * *
56400832 TAGTCCCTTGGTCGTGCTG-GAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAA
1 TAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAG
* *
56400896 CGTCGGACACCATCGGCAACC
65 CCTCGGACACCATCGACAACC
* * ** *
56400917 TAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTACCTATGG-GCTCAGATGTGCGGGAA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTA-GGTGCTTGGATGTGCGGGAG
** *
56400981 TGTCAGACACCATCGGA-AACC
65 CCTCGGACACCATC-GACAACC
* * ** *
56401002 TAGGCCCTTGGTCGTGCGAGACCCTCAGGCACCATCGGCACCTATGG-GCTCAGATGTACGGGAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTA-GGTGCTTGGATGTGCGGGAG
* *
56401066 CCTCGGACACCATCGGCAAAC
65 CCTCGGACACCATCGACAACC
* * * ** *
56401087 TAGGCCCTTGTTCGTGCGAAAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGG-TCGTGCGAGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
*
56401151 GCCTCGGGCACCATC-AGC-ACC
64 GCCTCGGACACCATCGA-CAACC
* ** * * * * * *
56401172 TGGGTGCTCGGAT-GTGCGGGAGCGTCGGACACCATCGGC-CCGTCGGTACTAT-GATGTGCGGG
1 TAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACC-TAGGTGCT-TGGATGTGCGGG
*** * **
56401234 AGCCTCGGACAATGTCGGCGTCC
63 AGCCTCGGACACCATCGACAACC
* * * * * * * *
56401257 TAGGCCCTTAGTCATGCGGGAGTCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAAC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
*
56401322 CTCGAACACCATC-AGCAACC
66 CTCGGACACCATCGA-CAACC
* * * * * * ** *
56401342 TAGGCCCTTGGTTGTTCGAGAGCCTTGGGCACCATCGGTACCTAGGGGCTCGGATGTGCAAGAGG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
* * *
56401407 TTCGGACACCATTGACAAAC
66 CTCGGACACCATCGACAACC
* * * * * * *
56401427 TAAGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTCGGATTTCCGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
* *
56401492 CTCAGG-CACCATCGGCAGA-A
66 CTC-GGACACCATCGACA-ACC
* * * **
56401512 TAGGCCCTTCGTCGTGTGAGAGCCTCGGGCACCATCGACACCTTA-GTGGCTCAGATGTGCGGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC-TAGGT-GCTTGGATGTGCGGGA
56401576 GCCTCG
64 GCCTCG
56401582 AGCAGCATGG
Statistics
Matches: 930, Mismatches: 201, Indels: 90
0.76 0.16 0.07
Matches are distributed among these distances:
83 2 0.00
84 33 0.04
85 770 0.83
86 124 0.13
87 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.19
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
CTCGGACACCATCGACAACC
Found at i:56400696 original size:213 final size:212
Alignment explanation
Indices: 56400383--56401417 Score: 710
Period size: 213 Copynumber: 4.9 Consensus size: 212
56400373 GATGTGAGCA
* *
56400383 AGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACT
1 AGCCTCGGACACCATCG-CAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACC
* * * *
56400448 TAGGTGCTTGGATGTGTGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTTGTGCGAGAG
64 TAGGTGCTTGGATGTGCGGAAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAG
* * * * *
56400513 CCTCGGGCACCATCGGTAACCTAGGCCCCT-GG-TCGTGTGAGAGCCTCGGGCACCAACAG-CAC
129 CCTCGGGCACCATCGGT-ACCTAGGCCACTCGGAT-GTGCGAGAGCCTCGGACACCAACAGTAAA
* *
56400575 CTGGGCGCTCGAAT-GTACGGG
192 CTAGGCCCTCG-ATCGTACGGG
*
56400596 AGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCTGGCACCATCGGTACC
1 AGCCTCGGACACCATC-GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACC
** * * * * * *
56400661 TAGGCACTCGGATGTGCGGAAGCCTCGGACACCATCGGTAAACTAAGCCCGTGGTCGTACGGGAG
64 TAGGTGCTTGGATGTGCGGAAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAG
* * * * ** * * * *
56400726 CCTCGGGTACTATCGGCA-CTTGGGTACTCGGATGTGCGGGAGCGTCGGACACCATCCGTAAACT
129 CCTCGGGCACCATCGGTACCTAGGCCACTCGGATGTGCGAGAGCCTCGGACACCAACAGTAAACT
* * * *
56400790 AGGCCCTTGGTCTTGCGGG
194 AGGCCCTCGATCGTACGGG
* * *
56400809 AGCCTCGCG-CACCATCGGCTACCTAGTCCCTTGGTCGTGCTG-GAGCCTCGAGCACCATCGACA
1 AGCCTCG-GACACCATC-GCAACCTAGGCCCTTGGTCGTGC-GAGAGCCTCG-GCACCATCGGCA
* * *
56400872 CCTTGGTGCTTGGATGTGCGGGAA-CGTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
62 CCTAGGTGCTTGGATGTGC-GGAAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA
* * * * *** * * *
56400936 GAGCCTCAGGCACCATCGGTACCTATGG--GCTCAGATGTGCGGGAATGTCAGACACCATC-GGA
126 GAGCCTCGGGCACCATCGGTACCTA-GGCCACTCGGATGTGCGAGAGCCTCGGACACCAACAGTA
* * * *
56400998 AACCTAGGCCCTTGGTCGTGCGAG
190 AA-CTAGGCCCTCGATCGTACGGG
* * * * * *
56401022 ACCCTCAGG-CACCATCGGC-ACCTATGG-GCTCAGAT-GTACGGGAGCCTCGGACACCATCGGC
1 AGCCTC-GGACACCATC-GCAACCTA-GGCCCT-TGGTCGTGCGAGAGCCTCGG-CACCATCGGC
* ** * * * * *
56401083 AAACTAGGCCCTT-GTTCGTGCGAAAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGC
61 -ACCTAGGTGCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * *** * * *
56401147 GAGAGCCTCGGGCACCATCAGCACCT-GGGTGCTCGGATGTGCGGGAGCGTCGGACACCATC-G-
124 GAGAGCCTCGGGCACCATCGGTACCTAGGCCACTCGGATGTGCGAGAGCCTCGGACACCAACAGT
*** * ** * *
56401209 GCCCGTCGGTACTATGAT-GTGCGGG
189 AAAC-TAGGCCCT-CGATCGTACGGG
*** ** * * * * *
56401234 AGCCTCGGACAATGTCGGCGTCCTAGGCCCTTAGTCATGCGGGAGTCTCGAGCACCATCGACACC
1 AGCCTCGGACACCATC-GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCACC
* * * * * *
56401299 TTGGTGCTTGGATGTGCGGGAA-CCTCGAACACCATCAGCAACCTAGGCCCTTGGTTGTTCGAGA
64 TAGGTGCTTGGATGTGC-GGAAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGA
* ** * **
56401363 GCCTTGGGCACCATCGGTACCTAGG-GGCTCGGATGTGCAAGAGGTTCGGACACCA
128 GCCTCGGGCACCATCGGTACCTAGGCCACTCGGATGTGCGAGAGCCTCGGACACCA
56401418 TTGACAAACT
Statistics
Matches: 662, Mismatches: 128, Indels: 65
0.77 0.15 0.08
Matches are distributed among these distances:
211 13 0.02
212 180 0.27
213 456 0.69
214 11 0.02
215 2 0.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (212 bp):
AGCCTCGGACACCATCGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCACCTA
GGTGCTTGGATGTGCGGAAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
TCGGGCACCATCGGTACCTAGGCCACTCGGATGTGCGAGAGCCTCGGACACCAACAGTAAACTAG
GCCCTCGATCGTACGGG
Found at i:56400904 original size:298 final size:296
Alignment explanation
Indices: 56400321--56401207 Score: 1085
Period size: 298 Copynumber: 3.0 Consensus size: 296
56400311 TCCGGCAGCA
* * * * * * * * * * *
56400321 TAGGCCTTTGGTCGTACGGGAGCCTCGGGCCCCATCGGCACCTTGGTGTTAGGATGTGAGCAAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTACCTAGG-GCTCGGATGTGCGGAAGC
* *
56400386 CTCGAACACCATC-GACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACTTA
65 CTCGGACACCATCGGA-AA-CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACTTG
* *
56400450 GGTGCTTGGATGTGTGGGAGCCTCGGACACCAT-CGACAAACTAGGCCCTTGGT-TGTGCGAGAG
128 GGT-CTCGGATGTGCGGGAGCCTCGGACACCATCCG-CAAACTAGGCCCTTGGTCT-TGCGAGAG
* *
56400513 CCTCGGGCACCATCGG-TAACCTAGGCCCCTGGTCGTG-TGAGAGCCTCGGGCACCAACAGCACC
190 CCTCGGGCACCATCGGCT-ACCTAGGCCCTTGGTCGTGCTGAGAGCCTCGGGCACCATCAGCACC
* * * *
56400576 TGGGCGCTCGAATGTACGGGAGCCTCGGACACCATCAGCAACC
254 TGGGTGCTCGGATGTGCGGGAGCGTCGGACACCATCAGCAACC
* *
56400619 TAGGCCCTTGGTCGTGCGAGAGCCTCTGGCACCATCGGTACCTAGGCACTCGGATGTGCGGAAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTACCTAGG-GCTCGGATGTGCGGAAGC
* * * * * *
56400684 CTCGGACACCATCGGTAAACTAAGCCCGTGGTCGTACGGGAGCCTCGGGTACTATCGGCACTTGG
65 CTCGGACACCATCGG-AAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACTTGG
* * *
56400749 GTACTCGGATGTGCGGGAGCGTCGGACACCATCCGTAAACTAGGCCCTTGGTCTTGCGGGAGCCT
129 GT-CTCGGATGTGCGGGAGCCTCGGACACCATCCGCAAACTAGGCCCTTGGTCTTGCGAGAGCCT
* * * *
56400814 CGCGCACCATCGGCTACCTAGTCCCTTGGTCGTGCTG-GAGCCTCGAGCACCATC-GACACCTTG
193 CGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGCTGAGAGCCTCGGGCACCATCAG-CACCTGG
* * *
56400877 GTGCTTGGATGTGCGGGAACGTCGGACACCATCGGCAACC
257 GTGCTCGGATGTGCGGGAGCGTCGGACACCATCAGCAACC
*
56400917 TAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTACCTATGGGCTCAGATGTGCGGGAAT
1 TAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTACCTA-GGGCTCGGATGTGC-GGAA-
* * *
56400982 G--TCAGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGAGACCCTCAGGCACCATCGGCACCT
63 GCCTCGGACACCATCGGAAA-CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA-CT
* * * * * *
56401045 ATGGG-CTCAGATGTACGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGTTCGTGCGAAAG
126 -TGGGTCTCGGATGTGCGGGAGCCTCGGACACCATCCGCAAACTAGGCCCTTGGTCTTGCGAGAG
* *
56401109 CCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACCATCAGCACCT
190 CCTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGCTGAGAGCCTCGGGCACCATCAGCACCT
56401173 GGGTGCTCGGATGTGCGGGAGCGTCGGACACCATC
255 GGGTGCTCGGATGTGCGGGAGCGTCGGACACCATC
56401208 GGCCCGTCGG
Statistics
Matches: 505, Mismatches: 69, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
297 5 0.01
298 476 0.94
299 18 0.04
300 6 0.01
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (296 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTACCTAGGGCTCGGATGTGCGGAAGCC
TCGGACACCATCGGAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACTTGGGT
CTCGGATGTGCGGGAGCCTCGGACACCATCCGCAAACTAGGCCCTTGGTCTTGCGAGAGCCTCGG
GCACCATCGGCTACCTAGGCCCTTGGTCGTGCTGAGAGCCTCGGGCACCATCAGCACCTGGGTGC
TCGGATGTGCGGGAGCGTCGGACACCATCAGCAACC
Found at i:56401277 original size:298 final size:296
Alignment explanation
Indices: 56400391--56401548 Score: 1023
Period size: 298 Copynumber: 3.9 Consensus size: 296
56400381 CAAGCCTCGA
*
56400391 ACACCATC-GACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACTTA-GGTG
1 ACACCATCGGA-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTATGG-G
* * *
56400454 CTTGGATGTGTGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTT-GTGCGAGAGCCTCG
64 CTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTT-GTTCGTGCGAGAGCCTCG
* * * * *
56400518 GGCACCATCGGTAACCTAGGCCCCTGGTCGTGTGAGAGCCTCGGGCACCAACAGCACCTGGGCGC
128 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTGGGTGC
* * * * *
56400583 TCGAATGTACGGGAGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCTGG
193 TCGGATGTGCGGGAGCGTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
* * * *
56400648 CACCATCGGTACCTAGGCAC-TCGGATGTGCGGAAGCCTCGG
257 CACCATCGGTACCTAGGCACTTAGTATGCG-GGAAG-CTCAG
* * * * * *
56400689 ACACCATCGGTAAA-CTAAGCCCGTGGTCGTACGGGAGCCTCGGGTACTATCGGCA-CT-TGGGT
1 ACACCATCGG-AAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTATGGG-
* * * * * *
56400751 ACTCGGATGTGCGGGAGCGTCGGACACCATCCGTAAACTAGGCCCTTGGTCTTGCGGGAGCCTCG
64 -CTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGTTCGTGCGAGAGCCTCG
* * * * *
56400816 CGCACCATCGGCTACCTAGTCCCTTGGTCGTGCTG-GAGCCTCGAGCACCATC-GACACCTTGGT
128 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACCATCAG-CACCTGGGT
* *
56400879 GCTTGGATGTGCGGGAACGTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCA
191 GCTCGGATGTGCGGGAGCGTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCA
* * *
56400944 GGCACCATCGGTACCTATGG-GCTCAGATGTGCGGGAATG-TCAG
255 GGCACCATCGGTACCTA-GGCACTTAG-TATGCGGGAA-GCTCAG
* *
56400987 ACACCATCGGAAACCTAGGCCCTTGGTCGTGCGAGACCCTCAGGCACCATCGGCACCTATGGGCT
1 ACACCATCGGAAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTATGGGCT
* * *
56401052 CAGATGTACGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGTTCGTGCGAAAGCCTCGGGC
66 CGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGTTCGTGCGAGAGCCTCGGGC
*
56401117 ACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTGGGTGCTCG
131 ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTGGGTGCTCG
* ** * *
56401182 GATGTGCGGGAGCGTCGGACACCATCGGC-CCGTCGGTACTATGAT-GTGCGGGAGCCTC-GG-A
196 GATGTGCGGGAGCGTCGGACACCATCGGCACC-TAGGCCCT-TGGTCGTGCGAGAGCCTCAGGCA
* *
56401243 CAATGTCGGCGT-CCTAGGCCCTTAGTCATGCGGG-AGTCTC-G
259 CCA--TC-G-GTACCTAGGCACTTAGT-ATGCGGGAAG-CTCAG
* * ** * * ** *
56401284 AGCACCATC-GACACCTTGGTGCTTGGAT-GTGCGGGAACCTCGAACACCATCAGCAACCTA-GG
1 A-CACCATCGGAAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTATGG
* * * * * * * * * ** * * * **
56401346 CCCTTGGTTGTTCGAGAGCCTTGGGCACCATCGG-TACCTAGGGGCTCGGAT-GTGCAAGAGGTT
63 -GCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGTTCGTGCGAGAGCCT
* * * * * * * * *
56401409 CGGACACCATTGACAAACTAAGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTCGGT
126 CGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTGGGT
* * * ** * *
56401474 GCTCGGATTTCCGGGAGCCTCAGG-CACCATCGGCAGAATAGGCCCTTCGTCGTGTGAGAGCCTC
191 GCTCGGATGTGCGGGAGCGTC-GGACACCATCGGCA-CCTAGGCCCTTGGTCGTGCGAGAGCCTC
*
56401538 GGGCACCATCG
254 AGGCACCATCG
56401549 ACACCTTAGT
Statistics
Matches: 697, Mismatches: 125, Indels: 77
0.78 0.14 0.09
Matches are distributed among these distances:
295 3 0.00
296 6 0.01
297 172 0.25
298 486 0.70
299 18 0.03
300 12 0.02
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (296 bp):
ACACCATCGGAAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTATGGGCT
CGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGTTCGTGCGAGAGCCTCGGGC
ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTGGGTGCTCG
GATGTGCGGGAGCGTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACC
ATCGGTACCTAGGCACTTAGTATGCGGGAAGCTCAG
Found at i:56401578 original size:43 final size:43
Alignment explanation
Indices: 56401531--56401703 Score: 213
Period size: 43 Copynumber: 4.0 Consensus size: 43
56401521 CGTCGTGTGA
* * *
56401531 GAGCCTCGGGCACCATCGACACCTTAGTGGCTCAGATGTGCGG
1 GAGCCTCGAGCACCATCGACACCTTGGTGGCTCGGATGTGCGG
* * * *
56401574 GAGCCTCGAGCAGCATGGGCACCTTGGTGGGTCGGATGTGCGG
1 GAGCCTCGAGCACCATCGACACCTTGGTGGCTCGGATGTGCGG
* * *
56401617 GAACCTCGAACACCATCGACAACCTTGGT-GCTTGGATGTGCGG
1 GAGCCTCGAGCACCATCGAC-ACCTTGGTGGCTCGGATGTGCGG
* * *
56401660 GAGCCTTGAGCACCATCGACACCTTGGTGCCTGGGATGTGCGG
1 GAGCCTCGAGCACCATCGACACCTTGGTGGCTCGGATGTGCGG
56401703 G
1 G
56401704 CTAAAGAAAA
Statistics
Matches: 109, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 8 0.07
43 93 0.85
44 8 0.07
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.20
Consensus pattern (43 bp):
GAGCCTCGAGCACCATCGACACCTTGGTGGCTCGGATGTGCGG
Found at i:56409098 original size:43 final size:43
Alignment explanation
Indices: 56409046--56409165 Score: 125
Period size: 42 Copynumber: 2.8 Consensus size: 43
56409036 GCACTGTCGG
* * **
56409046 CACCTTGGTGGCTCAGATGTGCCGGAGCCTTGAGCGGTACCAA
1 CACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCGCCACCAA
* * **
56409089 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCGCCACCGG
1 CACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCGCCACCAA
* * * *
56409131 CACCTTAGTGCCTCGGATGTGCTGGAGCCCCGAGC
1 CACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGC
56409166 ACCATCGGAA
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 33 0.52
43 30 0.48
ACGTcount: A:0.15, C:0.31, G:0.34, T:0.20
Consensus pattern (43 bp):
CACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCGCCACCAA
Found at i:56409657 original size:42 final size:42
Alignment explanation
Indices: 56409588--56409880 Score: 275
Period size: 42 Copynumber: 6.9 Consensus size: 42
56409578 AGCCTCCAAC
* * * * *
56409588 ACCTTGGTGGCTCGGATGTACGGGAGCCTCGAACACTATCGAA
1 ACCTTGGT-GCTTGGATGTGCGAGAGCCTCGAGCACCATCGAA
** *
56409631 ACCTTGGTGCTCAGATGTGCTAGAGCCTCG-GCCACCATCGACA
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAG-CACCATCGA-A
* * * *
56409674 ACCTTGGTGCTTGGATGTGTGAGAGGCTCGAGCACAATCGAT
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGAA
** * * * **
56409716 ACCTTGGTGCTTATATGTGTGAGAGCCTCGAGCACTATTGGC
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGAA
* ** * *
56409758 ATCTTGGTGGCTCAGATGTGCGGGAGCCTTTGA-CACCATCGACA
1 ACCTTGGT-GCTTGGATGTGCGAGAGCC-TCGAGCACCATCGA-A
*
56409802 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGAC
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGAA
* *
56409844 ACCTTGGTGCTTGGATGTGCGGGAGCCTCAAGCACCA
1 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCA
56409881 AAGCAAAAGT
Statistics
Matches: 205, Mismatches: 38, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
42 106 0.52
43 88 0.43
44 11 0.05
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (42 bp):
ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGAA
Found at i:56409816 original size:128 final size:127
Alignment explanation
Indices: 56409633--56409878 Score: 357
Period size: 128 Copynumber: 1.9 Consensus size: 127
56409623 CTATCGAAAC
* * *
56409633 CTTGGTGCTCAGATGTGCTAGAGCCTCGGCCACCATCGACAACCTTGGTGCTTGGATGTGTGAGA
1 CTTGGTGCTCAGATGTGCGAGAGCCTCGGACACCATCGACAACCTTGGTGCTTGGATGTGCGAGA
* * * * *
56409698 GGCTCGAGCACAATCGATACCTTGGTGCTTATATGTGTGAGAGCCTCGAGCACTATTGGCAT
66 GCCTCGAGCACAATCGACACCTTGGTGCTTAGATGTGCGAGAGCCTCAAGCACTATTGGCAT
* **
56409760 CTTGGTGGCTCAGATGTGCGGGAGCCTTTGACACCATCGACAACCTTGGTGCTTGGATGTGCGAG
1 CTTGGT-GCTCAGATGTGCGAGAGCCTCGGACACCATCGACAACCTTGGTGCTTGGATGTGCGAG
* * *
56409825 AGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCTCAAGCAC
65 AGCCTCGAGCACAATCGACACCTTGGTGCTTAGATGTGCGAGAGCCTCAAGCAC
56409879 CAAAGCAAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
127 6 0.06
128 98 0.94
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (127 bp):
CTTGGTGCTCAGATGTGCGAGAGCCTCGGACACCATCGACAACCTTGGTGCTTGGATGTGCGAGA
GCCTCGAGCACAATCGACACCTTGGTGCTTAGATGTGCGAGAGCCTCAAGCACTATTGGCAT
Found at i:56415312 original size:42 final size:41
Alignment explanation
Indices: 56415265--56417102 Score: 356
Period size: 43 Copynumber: 43.2 Consensus size: 41
56415255 GCCCTTGGTC
*
56415265 GTGCGGGAGCCTCGAGCACCATCGATACCGT-GGTGCTAGGAT
1 GTGCGGGAGCCTCGAGCACCATCGA-ACC-TAGGTGCTTGGAT
* ** *
56415307 GTGCGGGAACCTCG-GACACCATCGGCAACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGCTTGGAT
* * * *
56415350 GTGCGAGAGCCTCGGGCACCATTGGCACCTAGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCACCA-TCGAACCTAGGTGCTTGGAT
* * * **
56415392 GTGCGGGAGCCTCAAACACCATCGAGAAACTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATC--GAACCTAGGTGCTTGGAT
* * * * *
56415434 CGTGCGGGAGGCTCGAG-ACCATCGGCACCTGGGCGCTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATC-GAACCTAGGTGCTTGGAT
* ** *
56415476 GTGCGAGAGCCTCGAAAACCATCGGCAACCTAGG-CCTTTGG-T
1 GTGCGGGAGCCTCGAGCACCATC-G-AACCTAGGTGC-TTGGAT
* * * * *
56415518 CGTGCGAGAGCCTTGAGCACCATCGGCACCT-GGACGCTTAGAT
1 -GTGCGGGAGCCTCGAGCACCATC-GAACCTAGG-TGCTTGGAT
* * **
56415561 GCGCGGGAGCGTC-AGACACCATCGACAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATCG--AACCTAGGTGCTTGGAT
* * * * ** *
56415603 CTTACGAGAGCCTCGA-CACCATCGGCAAACTAGGCCCATGG-T
1 -GTGCGGGAGCCTCGAGCACCATC-G-AACCTAGGTGCTTGGAT
* * * * * * *
56415645 CATGCGGGAGCCTCGGGCACAATCGGCACCTGGGCGCTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATC-GAACCTAGGTGCTTGGAT
* * * * **
56415688 GTGCGGAAGCGTAG-GACACCATCGGCAAACTA-GACCGTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGC-TTGGAT
* * * * * * **
56415730 CTTGCGGGAGCCTCGGGGACCATCGGCTACCGAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATC-G-AACCTAGGTGCTTGGAT
*
56415773 CGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGA-ACCTAGGTGCTTGGAT
* * **
56415816 GCGCGGGAACCTC-AGACACCATCAGTAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGCTTGGAT
* * * * *
56415858 CGT-CTGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGAT
1 -GTGC-GGGAGCCTCGAGCACCATC-GAACCTAGGTGCTTGGAT
* * * *
56415901 GTGCGGGAGCCTCCGA-TACCATCGGCAAACTAGG-CCAGTGG-T
1 GTGCGGGAGCCT-CGAGCACCATC-G-AACCTAGGTGC-TTGGAT
* * * * * *
56415943 CGTGCGGGAGCCTCGGGCACAATCGGCACCTGGGCGCTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATC-GAACCTAGGTGCTTGGAT
* * * **
56415986 GTGCGGGAGCGTAG-GACACCATCGGCAAACTA-GACCGTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGC-TTGGAT
* * * * * ** *
56416028 CTTGCGGGAGCCTCGGGCACCATCGGCTACCGAAGCCCTTGGTT
1 -GTGCGGGAGCCTCGAGCACCATC-G-AACCTAGGTGCTTGGAT
* *
56416072 GTGCGGGAGCCTCGAACACCATCGACACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCACCATCGA-ACCTAGGTGCTTGGAT
* ** *
56416114 GTGCGGGAACCTC-AGACACCATCAGTAACCTAGGCCCTTAG-T
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGCTTGGAT
* * * * * *
56416156 CGTACGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATC-GAACCTAGGTGCTTGGAT
* * * ** *
56416199 GTGCGGAAGCCTTG-GACACCATCGGTAAACTAGGCCCGTGG-T
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGCTTGGAT
* * * * *
56416241 CGTGCGGGAGCCTC-AGGCACAATCGGCACCTGGGCGCTCGGAT
1 -GTGCGGGAGCCTCGA-GCACCATC-GAACCTAGGTGCTTGGAT
* * * **
56416284 GTGCGGGAGCGTAG-GACACCATCGGCAAACTA-GACCGTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGC-TTGGAT
* * * * * **
56416326 CTTGCGGGAGCCTCGGGCACCATCGGCTACCGAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATC-G-AACCTAGGTGCTTGGAT
*
56416369 CGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGA-ACCTAGGTGCTTGGAT
* **
56416412 GTGCGGGAACCTC-AGACACCATCGGTAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGCTTGGAT
* * * * *
56416454 CGTGCGAGAGCCTCGGGCACCATCGACACTTAGGCGCTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGA-ACCTAGGTGCTTGGAT
* * ** *
56416497 GTGCGGAAGCCTCCGA-CACCATCGACAAACTAGGCCCGTGG-T
1 GTGCGGGAGCCT-CGAGCACCATCG--AACCTAGGTGCTTGGAT
* * * * * * ** *
56416539 CGTGTGGGAGCGTCGGGCACTATCGGCACCTGGGCACTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATC-GAACCTAGGTGCTTGGAT
** * ** *
56416582 GTGCGGGAGTGTCG-GACACCATCGGCAAACTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGCTTGGAT
* * * * ** *
56416625 TTGCGGGAGCCTCGGGCACCATTGGCTACCTAGGCCCTTCG-T
1 GTGCGGGAGCCTCGAGCACCA-TCG-AACCTAGGTGCTTGGAT
* * * ** *
56416667 CGTGCGGGCGCCTCTGA-CACCATTGGCAAACTAGGCCCTTAG-T
1 -GTGCGGGAGCCTC-GAGCACCA-TCG-AACCTAGGTGCTTGGAT
** * * * ** *
56416710 CGTGATGGAGCCTCGGGCACCATCGGTAGA-ATAAGCCCTTCG-T
1 -GTGCGGGAGCCTCGAGCACCATC-G-A-ACCTAGGTGCTTGGAT
* * * * *
56416753 CGAGTGAGAGCCTCGACCACCATCGGGACCTAGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATC-GAACCTAGGTGCTTGGAT
* * * **
56416796 GTGCGAGAGCCTTG-GACACCATCGGCAAACTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACCTAGGTGCTTGGAT
* * * * *
56416838 CGCGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATC-GAACCTAGGTGCTTGGAT
* * * ** *
56416881 GTGCGGGGGCCTCGGGCACCATCGGCAGA-ATAGGCCCTT-CAT
1 GTGCGGGAGCCTCGAGCACCATC-G-A-ACCTAGGTGCTTGGAT
* * * * *
56416923 CATG-GGAGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
1 -GTGCGG-GAGCCTCGAGCACCATC-GAACCTAGGT-GCTTGGAT
* * * * *
56416967 GTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCACCAT-CGAACCTAGGT-GCTTGGAT
*
56417010 GTGCGGGAGCCTCG-GACACAATCGGCAACCTTA-GTGCTTGGAT
1 GTGCGGGAGCCTCGAG-CACCATC-G-AACC-TAGGTGCTTGGAT
* *
56417053 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGGAT
1 GTGCGGGAGCCTCGAGCACCATC-GAACCTAGGTGCTT-GGAT
56417096 GTGCGGG
1 GTGCGGG
56417103 CTAAAGAAAA
Statistics
Matches: 1342, Mismatches: 330, Indels: 247
0.70 0.17 0.13
Matches are distributed among these distances:
41 45 0.03
42 515 0.38
43 737 0.55
44 44 0.03
45 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (41 bp):
GTGCGGGAGCCTCGAGCACCATCGAACCTAGGTGCTTGGAT
Found at i:56415395 original size:85 final size:85
Alignment explanation
Indices: 56415252--56417102 Score: 1226
Period size: 85 Copynumber: 21.7 Consensus size: 85
56415242 TCCAGCAGCA
* * ** * * *
56415252 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGATACCGT-GGTGCTAGGATGTGCGGGAA
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACC-TAGGCGCTTGGATGTGCGGGAG
56415316 CCTCGGACACCATCGGCAACC
65 CCTCGGACACCATCGGCAACC
* * *
56415337 TAGGCCCTTGGTTGTGCGAGAGCCTCGGGCACCATTGGCACCTAGGTGCTTGGATGTGCGGGAGC
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
** *
56415402 CTCAAACACCATCGAG-AAAC
66 CTCGGACACCATCG-GCAACC
* * * * * *
56415422 TAGGCCCTTGGTCGTGCGGGAGGCTCGAG-ACCATCGGCACCTGGGCGCTCGGATGTGCGAGAGC
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
* *
56415486 CTCGAAAACCATCGGCAACC
66 CTCGGACACCATCGGCAACC
* * * * * * *
56415506 TAGGCCTTTGGTCGTGCGAGAGCCTTGAGCACCATCGGCACCT-GGACGCTTAGATGCGCGGGAG
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CGCTTGGATGTGCGGGAG
* * *
56415570 CGTCAGACACCATCGACAACC
65 CCTCGGACACCATCGGCAACC
* * * * * * *
56415591 TAGGCCCTTGGTCT-TACGAGAGCCTC-GACACCATCGGCAAACTAGGCCCATGG-TCATGCGGG
1 TAGGCCCTTGGT-TGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGG
* *
56415653 AGCCTCGGGCACAATCGGC-ACC
63 AGCCTCGGACACCATCGGCAACC
* * * * * * * * * * *
56415675 TGGGCGCTCGGATGTGCGGAAGCGTAGGACACCATCGGCAAACTAGAC-CGTTGG-TCTTGCGGG
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGC-TTGGAT-GTGCGGG
** *
56415738 AGCCTCGGGGACCATCGGCTACC
63 AGCCTCGGACACCATCGGCAACC
* * * * * * * * *
56415761 GAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGCGCGGGAAC
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
* * *
56415826 CTCAGACACCATCAGTAACC
66 CTCGGACACCATCGGCAACC
* * *
56415846 TAGGCCCTTGGTCGT-CTGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAG
1 TAGGCCCTTGGTTGTGC-GGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAG
* * *
56415910 CCTCCGATACCATCGGCAAAC
65 CCTCGGACACCATCGGCAACC
** * * * *
56415931 TAGGCCAGTGGTCGTGCGGGAGCCTCGGGCACAATCGGCACCTGGGCGCTCGGATGTGCGGGAGC
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
* * *
56415996 GTAGGACACCATCGGCAAAC
66 CTCGGACACCATCGGCAACC
* * * * * *
56416016 TAGACCGTTGGTCT-TGCGGGAGCCTCGGGCACCATCGGCTACCGAAGCCCTTGGTTGTGCGGGA
1 TAGGCCCTTGGT-TGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGATGTGCGGGA
* *
56416080 GCCTCGAACACCATCGAC-ACC
64 GCCTCGGACACCATCGGCAACC
* ** * * * * ** * * * *
56416101 TTGGTGCTTGGATGTGCGGGAACCTCAGACACCATCAGTAACCTAGGCCCTTAG-TCGTACGAGA
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCGCTTGGAT-GTGCGGGA
*
56416165 GCCTCGGGCACCATCGGC-ACC
64 GCCTCGGACACCATCGGCAACC
* * * * * * * * * *
56416186 TAGGCGCTCGGATGTGCGGAAGCCTTGGACACCATCGGTAAACTAGGCCCGTGG-TCGTGCGGGA
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGGA
*
56416250 GCCTCAGG-CACAATCGGC-ACC
64 GCCTC-GGACACCATCGGCAACC
* * * * * * * * * *
56416271 TGGGCGCTCGGATGTGCGGGAGCGTAGGACACCATCGGCAAACTAGAC-CGTTGG-TCTTGCGGG
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGC-TTGGAT-GTGCGGG
* *
56416334 AGCCTCGGGCACCATCGGCTACC
63 AGCCTCGGACACCATCGGCAACC
* * * * * * * *
56416357 GAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAAC
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
* *
56416422 CTCAGACACCATCGGTAACC
66 CTCGGACACCATCGGCAACC
* * * * * *
56416442 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACACTTAGGCGCTCGGATGTGCGGAAGC
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
* * *
56416507 CTCCGACACCATCGACAAAC
66 CTCGGACACCATCGGCAACC
* * * * * * * * *
56416527 TAGGCCCGTGGTCGTGTGGGAGCGTCGGGCACTATCGGCACCTGGGCACTCGGATGTGCGGGAGT
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
* *
56416592 GTCGGACACCATCGGCAAAC
66 CTCGGACACCATCGGCAACC
* * * * *
56416612 TAGGCCCTTGGTTTTGCGGGAGCCTCGGGCACCATTGGCTACCTAGGCCCTTCG-TCGTGCGGGC
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGA
* * *
56416676 GCCTCTGACACCATTGGCAAAC
64 GCCTCGGACACCATCGGCAACC
* * ** * ** * * * * * *
56416698 TAGGCCCTTAGTCGTGATGGAGCCTCGGGCACCATCGGTAGAATAAGCCCTTCG-TCGAGTGAGA
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGCGCTTGGAT-GTGCGGGA
*
56416762 GCCTC-GACCACCATCGG-GACC
64 GCCTCGGA-CACCATCGGCAACC
** * * * * * * *
56416783 TAGGTGCTTGGATGTGCGAGAGCCTTGGACACCATCGGCAAACTAGGCCCTTGG-TCGCGCGGGA
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGA
*
56416847 GCCTCGGGCACCATCGGC-ACC
64 GCCTCGGACACCATCGGCAACC
* ** * * * ** * * *
56416868 TTGGTGCTCGGATGTGCGGGGGCCTCGGGCACCATCGGCAGAATAGGCCCTT-CATCATG-GGAG
1 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGCGCTTGGAT-GTGCGG-G
*
56416931 AGCCTCGGGCACCATCGGC-ACC
63 AGCCTCGGACACCATCGGCAACC
* ** * * * * * * * *
56416953 TTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGGCTCGGATGTGCGGGA
1 TAGG-CCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CGCTTGGATGTGCGGGA
*
56417018 GCCTCGGACACAATCGGCAACC
64 GCCTCGGACACCATCGGCAACC
* * * *
56417040 TTAGTG--CTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGGATGTGCGGG
1 -TAG-GCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTT-GGATGTGCGGG
56417103 CTAAAGAAAA
Statistics
Matches: 1411, Mismatches: 307, Indels: 95
0.78 0.17 0.05
Matches are distributed among these distances:
83 2 0.00
84 113 0.08
85 985 0.70
86 301 0.21
87 7 0.00
88 2 0.00
89 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGC
CTCGGACACCATCGGCAACC
Found at i:56415955 original size:298 final size:298
Alignment explanation
Indices: 56415252--56417102 Score: 1983
Period size: 298 Copynumber: 6.2 Consensus size: 298
56415242 TCCAGCAGCA
* * ** * * *
56415252 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGATACCGT-GGTGCTAGGATGTGCGGGAA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC-TAGGCGCTCGGATGTGCGGGAG
* * * * * * * *
56415316 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTTGTGCGAGAGCCTCGGGCACCATTGGCACCTA
65 CCTCCGACACCATCGGCAAACTAGGCCCGTGGTCGTGCGGGAGCCTCGGGCACAATCGGCACCTG
* * * * * * *
56415381 GGTGCTTGGATGTGCGGGAGCCTCA-AACACCATCGAG-AAACTAGGCCCTTGGTCGTGCGGGAG
130 GGCGCTCGGATGTGCGGGAGCGT-AGGACACCATCG-GCAAACTAGACCGTTGGTCTTGCGGGAG
* * * * * * ** *
56415444 GCTCGAG-ACCATCGGC-ACCTG-GGCGCTCGGAT-GTGCGAGAGCCTCGAAAACCATCGGCAAC
193 CCTCGGGCACCATCGGCTACC-GAAGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGAC-AC
* * * * * *
56415505 CTAGG-CCTTTGG-TCGTGCGAGAGCCT-TGAGCACCATCGG-CACC
255 CTTGGTGC-TTGGAT-GTGCGGGAACCTCAGA-CACCATCGGTAACC
* * * * * * * * * * * * *
56415548 T-GGACGCTTAGAT-GCGCGGGAGCGTCAGACACCATCGACAACCTAGGCCCTTGG-TCTTACGA
1 TAGG-CCCTT-GGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTCGGAT-GTGCGG
* *
56415610 GAGCCT-CGACACCATCGGCAAACTAGGCCCATGGTCATGCGGGAGCCTCGGGCACAATCGGCAC
62 GAGCCTCCGACACCATCGGCAAACTAGGCCCGTGGTCGTGCGGGAGCCTCGGGCACAATCGGCAC
*
56415674 CTGGGCGCTCGGATGTGCGGAAGCGTAGGACACCATCGGCAAACTAGACCGTTGGTCTTGCGGGA
127 CTGGGCGCTCGGATGTGCGGGAGCGTAGGACACCATCGGCAAACTAGACCGTTGGTCTTGCGGGA
*
56415739 GCCTCGGGGACCATCGGCTACCGAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCT
192 GCCTCGGGCACCATCGGCTACCGAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCT
* *
56415804 TGGTGCTTGGATGCGCGGGAACCTCAGACACCATCAGTAACC
257 TGGTGCTTGGATGTGCGGGAACCTCAGACACCATCGGTAACC
56415846 TAGGCCCTTGGTCGT-CTGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAG
* *
56415910 CCTCCGATACCATCGGCAAACTAGGCCAGTGGTCGTGCGGGAGCCTCGGGCACAATCGGCACCTG
65 CCTCCGACACCATCGGCAAACTAGGCCCGTGGTCGTGCGGGAGCCTCGGGCACAATCGGCACCTG
56415975 GGCGCTCGGATGTGCGGGAGCGTAGGACACCATCGGCAAACTAGACCGTTGGTCTTGCGGGAGCC
130 GGCGCTCGGATGTGCGGGAGCGTAGGACACCATCGGCAAACTAGACCGTTGGTCTTGCGGGAGCC
* *
56416040 TCGGGCACCATCGGCTACCGAAGCCCTTGGTTGTGCGGGAGCCTCGAACACCATCGACACCTTGG
195 TCGGGCACCATCGGCTACCGAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGG
*
56416105 TGCTTGGATGTGCGGGAACCTCAGACACCATCAGTAACC
260 TGCTTGGATGTGCGGGAACCTCAGACACCATCGGTAACC
* * *
56416144 TAGGCCCTTAGTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGAAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGC
** * *
56416209 CTTGGACACCATCGGTAAACTAGGCCCGTGGTCGTGCGGGAGCCTCAGGCACAATCGGCACCTGG
66 CTCCGACACCATCGGCAAACTAGGCCCGTGGTCGTGCGGGAGCCTCGGGCACAATCGGCACCTGG
56416274 GCGCTCGGATGTGCGGGAGCGTAGGACACCATCGGCAAACTAGACCGTTGGTCTTGCGGGAGCCT
131 GCGCTCGGATGTGCGGGAGCGTAGGACACCATCGGCAAACTAGACCGTTGGTCTTGCGGGAGCCT
56416339 CGGGCACCATCGGCTACCGAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGT
196 CGGGCACCATCGGCTACCGAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGT
56416404 GCTTGGATGTGCGGGAACCTCAGACACCATCGGTAACC
261 GCTTGGATGTGCGGGAACCTCAGACACCATCGGTAACC
* * *
56416442 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACACTTAGGCGCTCGGATGTGCGGAAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGC
* * * *
56416507 CTCCGACACCATCGACAAACTAGGCCCGTGGTCGTGTGGGAGCGTCGGGCACTATCGGCACCTGG
66 CTCCGACACCATCGGCAAACTAGGCCCGTGGTCGTGCGGGAGCCTCGGGCACAATCGGCACCTGG
* * * * * *
56416572 GCACTCGGATGTGCGGGAGTGTCGGACACCATCGGCAAACTAGGCCCTTGGTTTTGCGGGAGCCT
131 GCGCTCGGATGTGCGGGAGCGTAGGACACCATCGGCAAACTAGACCGTTGGTCTTGCGGGAGCCT
* * * * * * * * *
56416637 CGGGCACCATTGGCTACCTAGGCCCTTCGTCGTGCGGGCGCCTCTGA-CACCATTGGCAAACTAG
196 CGGGCACCATCGGCTACCGAAGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTG
** * ** * * * *
56416701 GCCCTTAG-TCGTGATGGAGCCTCGGGCACCATCGGTAGA-A
259 GTGCTTGGAT-GTGCGGGAACCTCAGACACCATCGGTA-ACC
* * * * ** * * * *
56416741 TAAGCCCTTCGTCGAGTGAGAGCCTCGACCACCATCGGGACCTAGGTGCTTGGATGTGCGAGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGC
** * * * *
56416806 CTTGGACACCATCGGCAAACTAGGCCCTTGGTCGCGCGGGAGCCTCGGGCACCATCGGCACCTTG
66 CTCCGACACCATCGGCAAACTAGGCCCGTGGTCGTGCGGGAGCCTCGGGCACAATCGGCACCTGG
* * * * * * * ** *
56416871 GTGCTCGGATGTGCGGGGGCCTCGGGCACCATCGGCAGAA-TAGGCCCTTCATCATG-GGAGAGC
131 GCGCTCGGATGTGCGGGAGCGTAGGACACCATCGGCA-AACTAGACCGTTGGTCTTGCGG-GAGC
** * * * * *
56416934 CTCGGGCACCATCGGC-ACCTTGGTG-GCTCGGAT-GTGCGGGAGCCTCGAGCAGCATAGGCACC
194 CTCGGGCACCATCGGCTACC--GAAGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGACACC
* * * * *
56416996 TTGGTGGCTCGGATGTGCGGGAGCCTCGGACACAATCGGCAACC
256 TTGGT-GCTTGGATGTGCGGGAACCTCAGACACCATCGGTAACC
* * * * *
56417040 TTAGTG--CTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGGATGTGCGG
1 -TAG-GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGC-TCGGATGTGCGG
56417102 G
62 G
56417103 CTAAAGAAAA
Statistics
Matches: 1335, Mismatches: 182, Indels: 72
0.84 0.11 0.05
Matches are distributed among these distances:
295 4 0.00
296 135 0.10
297 81 0.06
298 806 0.60
299 288 0.22
300 20 0.01
301 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (298 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGC
CTCCGACACCATCGGCAAACTAGGCCCGTGGTCGTGCGGGAGCCTCGGGCACAATCGGCACCTGG
GCGCTCGGATGTGCGGGAGCGTAGGACACCATCGGCAAACTAGACCGTTGGTCTTGCGGGAGCCT
CGGGCACCATCGGCTACCGAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGT
GCTTGGATGTGCGGGAACCTCAGACACCATCGGTAACC
Found at i:56416051 original size:213 final size:212
Alignment explanation
Indices: 56415307--56417079 Score: 982
Period size: 213 Copynumber: 8.3 Consensus size: 212
56415297 GTGCTAGGAT
* * * * * * * *
56415307 GTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTTGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTGGGCGCTTGGATGTGCGGGAGCCT-AGACACCAT
* * * *
56415372 TGGC-ACCTAGG-TGCTTGGAT-GTGCGGGAGCCTCAAACACCATCGAG-AAACTAGGCCCTTGG
64 CGGCAACCTAGGCCG-TTGG-TCGTGCGGGAGCCTCAGACACCATC-AGTAACCTAGGCCCTTGG
* * * * *
56415433 TCGTGCGGGAGGCTCGAG-ACCATCGGCACCTGGGCGCTCGGATGTGCGAGAGCCT-CGAAAACC
126 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCCG-ACACC
*
56415496 ATCGGCAACCTAGGCCTTTGGTC
190 ATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
56415519 GTGCGAGAGCCTTGAGCACCATCGGCACCTGGACGCTTAGATGCGCGGGAGCGTCAGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTTGGATGTGCGGGAGCCT-AGACACCATC
* * * * * * * * * *
56415584 GACAACCTAGGCCCTTGGTCTTACGAGAGCCTC-GACACCATCGGCAAACTAGGCCCATGGTCAT
65 GGCAACCTAGGCCGTTGGTCGTGCGGGAGCCTCAGACACCATCAGTAACCTAGGCCCTTGGTCGT
* * * * **
56415648 GCGGGAGCCTCGGGCACAATCGGCACCTGGGCGCTCGGATGTGCGGAAGCGTAGGACACCATCGG
130 GCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCCGACACCATCGG
* * *
56415713 CAAACTAGACCGTTGGTC
195 CAACCTAGGCCCTTGGTC
* * * * *
56415731 TTGCGGGAGCCTCGGGGACCATCGGCTACC-GAAGCCCTTGG-TCGTGCGGGAGCCTCGAGCACC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTG-GGCGCTTGGAT-GTGCGGGAGCCTAGA-CACC
* * * * *
56415794 ATCGAC-ACCTTGG-TGCTTGGAT-GCGCGGGAACCTCAGACACCATCAGTAACCTAGGCCCTTG
62 ATCGGCAACCTAGGCCG-TTGG-TCGTGCGGGAGCCTCAGACACCATCAGTAACCTAGGCCCTTG
* *
56415856 GTCGT-CTGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCCGATAC
125 GTCGTGC-GGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCCGACAC
* **
56415920 CATCGGCAAACTAGGCCAGTGGTC
189 CATCGGCAACCTAGGCCCTTGGTC
* * *
56415944 GTGCGGGAGCCTCGGGCACAATCGGCACCTGGGCGCTCGGATGTGCGGGAGCGTAGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTTGGATGTGCGGGAGCCTA-GACACCATC
* * * * * * * * *
56416009 GGCAAACTAGACCGTTGGTCTTGCGGGAGCCTCGGGCACCATCGGCT-ACCGAAGCCCTTGGTTG
65 GGCAACCTAGGCCGTTGGTCGTGCGGGAGCCTCAGACACCATCAG-TAACCTAGGCCCTTGGTCG
** * * * * * * *
56416073 TGCGGGAGCCTCGAACACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCAGACACCATCA
129 TGCGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCCGACACCATCG
* *
56416138 GTAACCTAGGCCCTTAGTC
194 GCAACCTAGGCCCTTGGTC
* * * * * *
56416157 GTACGAGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGAAGCCTTGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTTGGATGTGCGGGAGCC-TAGACACCATC
* * * * ** * * *
56416222 GGTAAACTAGGCCCG-TGGTCGTGCGGGAGCCTCAGGCACAATC-GGCACCTGGGCGCTCGGAT-
65 GGCAACCTAGG-CCGTTGGTCGTGCGGGAGCCTCAGACACCATCAGTAACCTAGGCCCTTGG-TC
* * * * * * * * *
56416284 GTGCGGGAGCGTAGGACACCATCGGCAAACTAGAC-CGTTGG-TCTTGCGGGAGCCTCGGGCACC
128 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGC-TCGGAT-GTGCGGGAGCCTCCGACACC
* * *
56416347 ATCGGCTACCGAAGCCCTTGGTC
190 ATCGGCAACCTAGGCCCTTGGTC
* * * * *
56416370 GTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCAGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTTGGATGTGCGGGAGCCT-AGACACCATC
* * * * * * * *
56416435 GGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-G-ACACTTAGGCGCTCGGAT-
65 GGCAACCTAGGCCGTTGGTCGTGCGGGAGCCTCAGACACCATCAGTA-ACCTAGGCCCTTGG-TC
* * * * * * * * * * *
56416497 GTGCGGAAGCCTCCGACACCATCGACAAACTAGGC-C-CGTGGTCGTGTGGGAGCGTCGGGCACT
128 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCGCTCG-GAT-GTGCGGGAGCCTCCGACACC
* * *
56416560 ATCGGC-ACCTGGGCACTCGGAT-
190 ATCGGCAACCTAGGCCCTTGG-TC
** * * * * * * * *
56416582 GTGCGGGAGTGTCGGACACCATCGGCAAACTAGGCCCTTGGTTTTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTGGGCGCTTGGATGTGCGGGAGCCT-AGACACCAT
* * * * * * ** * * *
56416647 TGGCTACCTAGGCCCTTCGTCGTGCGGGCGCCTCTGACACCATTGGCAAACTAGGCCCTTAGTCG
64 CGGCAACCTAGGCCGTTGGTCGTGCGGGAGCCTCAGACACCATCAGTAACCTAGGCCCTTGGTCG
** * ** * * *
56416712 TGATGGAGCCTCGGGCACCATCGGTAGAATAAGCCCTTCGTCGA-GT--GAGAGCCT-CGACCAC
129 TGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGCGC-TCG--GATGTGCGGGAGCCTCCGA-CAC
* **
56416773 CATCGG-GACCTAGGTGCTTGGAT-
189 CATCGGCAACCTAGGCCCTTGG-TC
* * * * * * * * *
56416796 GTGCGAGAGCCTTGGACACCATCGGCAAACTAGGCCCTTGG-TCGCGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTGGGCGCTTGGAT-GTGCGGGAGCCT-AGACACCA
* * * * * * * * * *
56416860 TCGGC-ACCTTGG-TGCTCGGAT-GTGCGGGGGCCTCGGGCACCATCGGCAGA-ATAGGCCCTTC
63 TCGGCAACCTAGGCCG-TTGG-TCGTGCGGGAGCCTCAGACACCATCAGTA-ACCTAGGCCCTTG
* * * *
56416921 ATCATG-GGAGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCT-CGAGC
125 GTCGTGCGG-GAGCCTCGGGCACCATCGGCACCTAGG-CGCTCGGATGTGCGGGAGCCTCCGA-C
* * * ** *
56416984 AGCATAGGC-ACCTTGGTGGCTCGGAT-
187 ACCATCGGCAACCTAGG-CCCTTGG-TC
* * ** * *
56417010 GTGCGGGAGCCTCGGACACAATCGGCAACCTTAGTGCTTGGATGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTGGGCGCTTGGATGTGCGGGAGCCTAGA-CACCAT
56417075 CGGCA
64 CGGCA
56417080 CCTTGGTGCT
Statistics
Matches: 1226, Mismatches: 275, Indels: 117
0.76 0.17 0.07
Matches are distributed among these distances:
210 3 0.00
211 71 0.06
212 247 0.20
213 707 0.58
214 190 0.15
215 3 0.00
216 2 0.00
217 2 0.00
218 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (212 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTTGGATGTGCGGGAGCCTAGACACCATCG
GCAACCTAGGCCGTTGGTCGTGCGGGAGCCTCAGACACCATCAGTAACCTAGGCCCTTGGTCGTG
CGGGAGCCTCGGGCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCCGACACCATCGGC
AACCTAGGCCCTTGGTC
Found at i:56416132 original size:128 final size:127
Alignment explanation
Indices: 56415939--56416222 Score: 309
Period size: 128 Copynumber: 2.2 Consensus size: 127
56415929 ACTAGGCCAG
* * * * * *
56415939 TGGTCGTGCGGGAGCCTCGGGCACAATCGGCACCTGGGCGCTCGGATGTGCGGGAGCGTAGGACA
1 TGGTTGTGCGGGAGCCTCGGACACCATCGACACCTGGGCGCTCGGATGTGCGGGAACCTAGGACA
* * * * * *
56416004 CCATCGGCAAACTAGACCGTTGGTCTTGCGGGAGCCTCGGGCACCATCGGCTACCGAAGCCCT
66 CCATCAGCAAACTAGACCCTTAGTCGTACGAGAGCCTCGGGCACCATCGGC-ACCGAAGCCCT
* * * *
56416067 TGGTTGTGCGGGAGCCTCGAACACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCA-GAC
1 TGGTTGTGCGGGAGCCTCGGACACCATCGACACCTGGGCGCTCGGATGTGCGGGAACCT-AGGAC
* * * * * *
56416131 ACCATCAGTAACCTAGGCCCTTAGTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGCGCT
65 ACCATCAGCAAACTAGACCCTTAGTCGTACGAGAGCCTCGGGCACCATCGGCACCGAAGCCCT
* * * *
56416194 CGGATGTGCGGAAGCCTTGGACACCATCG
1 TGGTTGTGCGGGAGCCTCGGACACCATCG
56416223 GTAAACTAGG
Statistics
Matches: 128, Mismatches: 27, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
127 32 0.25
128 95 0.74
129 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (127 bp):
TGGTTGTGCGGGAGCCTCGGACACCATCGACACCTGGGCGCTCGGATGTGCGGGAACCTAGGACA
CCATCAGCAAACTAGACCCTTAGTCGTACGAGAGCCTCGGGCACCATCGGCACCGAAGCCCT
Found at i:56416373 original size:128 final size:128
Alignment explanation
Indices: 56416232--56416478 Score: 336
Period size: 128 Copynumber: 1.9 Consensus size: 128
56416222 GGTAAACTAG
* * *
56416232 GCCCGTGGTCGTGCGGGAGCCTC-AGGCACAATCGGCACCTGGGCGCTCGGATGTGCGGGAGCGT
1 GCCCGTGGTCGTGCGGGAGCCTCGA-GCACAATCGACACCTGGGCGCTCGGATGTGCGGGAACCT
* * *
56416296 -AGGACACCATCGGCAAACTAGACCGTTGGTCTTGCGGGAGCCTCGGGCACCATCGGCTACCGAA
65 CA-GACACCATCGGCAAACTAGACCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCTACCGAA
* * * * *
56416360 GCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTC
1 GCCCGTGGTCGTGCGGGAGCCTCGAGCACAATCGACACCTGGGCGCTCGGATGTGCGGGAACCTC
* * *
56416425 AGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
66 AGACACCATCGGCAAACTAGACCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
56416479 ACACTTAGGC
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
128 101 0.98
129 2 0.02
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.17
Consensus pattern (128 bp):
GCCCGTGGTCGTGCGGGAGCCTCGAGCACAATCGACACCTGGGCGCTCGGATGTGCGGGAACCTC
AGACACCATCGGCAAACTAGACCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCTACCGAA
Found at i:56416932 original size:128 final size:129
Alignment explanation
Indices: 56416800--56417036 Score: 309
Period size: 128 Copynumber: 1.8 Consensus size: 129
56416790 TTGGATGTGC
* * * *
56416800 GAGAGCCTTGGACACCATCGGCAAACTAGG-CCCTTGG-TCGCGCGGGAGCCTCGGGCACCATCG
1 GAGAGCCTCGGACACCATCGGC-AACTAGGTCCCTCGGAT-GCGCGGGAGCCTCGAGCACCATAG
* * *
56416863 GCACCTTGGT-GCTCGGATGTGCGGGGGCCTCGGGCACCATCGGCAGAATAGGCCCTTCATCATG
64 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGACACAATCGGCAGAATAGGCCCTTCATCATG
56416927 G
129 G
* * * ** * *
56416928 GAGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATAGGC
1 GAGAGCCTCGGACACCATCGGCAACTAGGTCCCTCGGATGCGCGGGAGCCTCGAGCACCATAGGC
56416993 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGACACAATCGGCA
66 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGACACAATCGGCA
56417037 ACCTTAGTGC
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
127 5 0.05
128 54 0.59
129 33 0.36
ACGTcount: A:0.17, C:0.30, G:0.36, T:0.17
Consensus pattern (129 bp):
GAGAGCCTCGGACACCATCGGCAACTAGGTCCCTCGGATGCGCGGGAGCCTCGAGCACCATAGGC
ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGACACAATCGGCAGAATAGGCCCTTCATCATGG
Found at i:56420914 original size:43 final size:43
Alignment explanation
Indices: 56420830--56420914 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
56420820 GACTATCGCC
* **
56420830 ACCTTGGTGGCTCGGATGTACGGAAGCCTCGAGCAGTATCGGT
1 ACCTTGGTGGCTCGGATGTACGGAACCCTCGAGCACCATCGGT
*
56420873 ACCTTGGTGGCTCGGATGTGCGGGAACCCT-GAGCACCATCGG
1 ACCTTGGTGGCTCGGATGTAC-GGAACCCTCGAGCACCATCGG
56420915 CAACTTTGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 30 0.81
44 7 0.19
ACGTcount: A:0.18, C:0.26, G:0.35, T:0.21
Consensus pattern (43 bp):
ACCTTGGTGGCTCGGATGTACGGAACCCTCGAGCACCATCGGT
Found at i:56421437 original size:43 final size:42
Alignment explanation
Indices: 56421386--56421721 Score: 302
Period size: 43 Copynumber: 7.9 Consensus size: 42
56421376 AGTCTCCAGC
* * *
56421386 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGAA
1 ACCTTGGT-GCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
* ** * * * *
56421429 ACATTGGTGGCTCATATGAGGGGGAGCCTCGAGCACCATCGGC
1 ACCTTGGT-GCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
* *
56421472 ACCTTGGTGCTCGGATGTGCTAGAGCCTCG-GCCACCATCAGCA
1 ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAG-CACCATC-GGA
* * * *
56421515 ACCTTGGTGCTTGGATGTGTGAGAGGCTCGAGCACAATC-GA
1 ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
* * * *
56421556 TAACTTGGTGC-CTGTATGTGTGAGAGCCTCGAGCACCATCGGC
1 -ACCTTGGTGCTC-GGATGTGCGAGAGCCTCGAGCACCATCGGA
* * *
56421599 ACCTTGGTAGCTCAGATGTGCGGGAGCCTTTGA-CACCATCGGTA
1 ACCTTGGT-GCTCGGATGTGCGAGAGCC-TCGAGCACCATCGG-A
* * *
56421643 ACCTTGCTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGC
1 ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
* * *
56421685 ACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCA
1 ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCA
56421722 AAGCAAAAGT
Statistics
Matches: 237, Mismatches: 45, Indels: 23
0.78 0.15 0.08
Matches are distributed among these distances:
41 2 0.01
42 100 0.42
43 123 0.52
44 12 0.05
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.22
Consensus pattern (42 bp):
ACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCATCGGA
Found at i:56421545 original size:85 final size:85
Alignment explanation
Indices: 56421384--56421721 Score: 335
Period size: 85 Copynumber: 4.0 Consensus size: 85
56421374 AGAGTCTCCA
* * ** * * * *
56421384 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGAAACATTGGTGGCTCATATGAG
1 GCACCTTGGT-GCTCGGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTAGCTCAGATGTG
*
56421449 GGGGAGCCTCGAGCACCATCG
65 TGGGAGCCTCGAGCACCATCG
* * **
56421470 GCACCTTGGTGCTCGGATGTGCTAGAGCCTCG-GCCACCATCAGCAACCTTGGT-GCTTGGATGT
1 GCACCTTGGTGCTCGGATGTGCGAGAGCCTCGAG-CACCATCGGC-ACCTTGGTAGCTCAGATGT
* * *
56421533 GTGAGAGGCTCGAGCACAATCG
64 GTGGGAGCCTCGAGCACCATCG
** * * *
56421555 ATAACTTGGTGC-CTGTATGTGTGAGAGCCTCGAGCACCATCGGCACCTTGGTAGCTCAGATGTG
1 GCACCTTGGTGCTC-GGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTAGCTCAGATGTG
* *
56421619 CGGGAGCCTTTGA-CACCATCG
65 TGGGAGCC-TCGAGCACCATCG
* * * **
56421640 GTAACCTTGCTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGATGTG
1 G-CACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTAGCTCAGATGTG
56421704 TGGGAGCCTCGAGCACCA
65 TGGGAGCCTCGAGCACCA
56421722 AAGCAAAAGT
Statistics
Matches: 203, Mismatches: 40, Indels: 19
0.77 0.15 0.07
Matches are distributed among these distances:
84 12 0.06
85 126 0.62
86 65 0.32
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (85 bp):
GCACCTTGGTGCTCGGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTAGCTCAGATGTGT
GGGAGCCTCGAGCACCATCG
Found at i:56421617 original size:128 final size:126
Alignment explanation
Indices: 56421382--56421721 Score: 403
Period size: 128 Copynumber: 2.7 Consensus size: 126
56421372 CAAGAGTCTC
* * * * *
56421382 CAGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGAAACATTGGTGGCTCATAT
1 CAGCAACCTTGGT-GCTTGGATGTGCGAGAGCCTCGAGCACCATCGAAAC-TTGGTGCCT-GTAT
* * * * *
56421446 GAGGGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCTAGAGCCTCGGCCACCAT
63 GTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCAGATGTGCGAGAGCCTCGGACACCAT
* * *
56421510 CAGCAACCTTGGTGCTTGGATGTGTGAGAGGCTCGAGCACAATCGATAACTTGGTGCCTGTATGT
1 CAGCAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGA-AACTTGGTGCCTGTATGT
* * **
56421575 GTGAGAGCCTCGAGCACCATCGGCACCTTGGTAGCTCAGATGTGCGGGAGCCTTTGACACCAT
65 GTGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCAGATGTGCGAGAGCCTCGGACACCAT
* * * * * * *
56421638 CGGTAACCTTGCTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
1 CAGCAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATC-GAAACTTGGTGCCTGTATGT
56421703 GTGGGAGCCTCGAGCACCA
65 GTGGGAGCCTCGAGCACCA
56421722 AAGCAAAAGT
Statistics
Matches: 180, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
127 34 0.19
128 134 0.74
129 12 0.07
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (126 bp):
CAGCAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGAAACTTGGTGCCTGTATGTG
TGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCAGATGTGCGAGAGCCTCGGACACCAT
Found at i:56427088 original size:43 final size:43
Alignment explanation
Indices: 56426977--56428289 Score: 807
Period size: 43 Copynumber: 30.9 Consensus size: 43
56426967 TCCGGCAGCA
* *
56426977 TAGGCCCTTGGTCGTGCAGGAGCCTCAGG-CACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACC
* ** * *
56427019 TTGGTGCTAGGAT-GTGTGGGAGCCTCGGACACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * *
56427062 TAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATTGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * *
56427104 TAGGTGCC-TGGAT-GTGTC-GGAGCCTCGAACACCATCGACAAAC
1 TAGG-CCCTTGG-TCGTG-CGGGAGCCTCGGACACCATCGGCAACC
* *
56427147 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** *
56427190 TAGGCTCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * ** *
56427232 TCGGCGCTCGGAGGTACGGGAGCCTCGGACACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * *
56427275 TAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * *
56427317 TAGGCACTCAGAT-GTGCGGGAGCCTCGGACACCATCGGTAAAC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * *
56427360 TAGGCCCGTGGTCGTACGGGAGCCTCGGGCACCATCGGTAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * *
56427403 TAGGCCCTTCGTCTTACGGGAGCCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *
56427446 TAGGCCTTTGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* ** *
56427488 TTGGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
56427531 TAGGCCCTTAGTCGTG-GAGAGCCAC-GAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* * * * * * * *
56427572 TAGGCGCTCGGAT-GTGCGAGCGCCTCTGATACCATCAGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
*
56427615 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *** * *
56427657 TCGATGCTTGGAT-GTGCGAGAGCCTCAGG-CACCATCGGCAGA-A
1 TAGGCCCTTGG-TCGTGCGGGAGCCTC-GGACACCATCGGCA-ACC
* * * ** * * *
56427700 TAGGCACTTCGTCGTACAAGAGCCTCGGCCACCATTGG-GACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
** * * *
56427742 TAGGTGCTTGGAT-GTGCGGGAGCCTCGGACATCATCGGAAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * *
56427785 TAGGCCCTTGGTCCTTCGAGAGCCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** *
56427828 TAGGCCCTTGGTCGTGCGAGAGTTTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * *
56427870 T-GGCCGCTCGGAT-ATGCGGGAGCATCGGACAACATCGGCAAAC
1 TAGGCC-CTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * *
56427913 TAGGCCCTTGGTCGTACGGGCA-CCTC-GACCAACATTGGC-CCC
1 TAGGCCCTTGGTCGTGCGGG-AGCCTCGGA-CACCATCGGCAACC
* ** * * *** * *
56427955 TCGGTGCTATGAT-GTGCGGGAGCCTCAGACAATGTCAGCATCC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* **
56427998 TAGGCCCTTGGTCGTGCGGGAGTCTC-GAGCACCATCAAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* ** *
56428040 TTGGTGCTTGGAT-GTGCAGGAAG-CTCGGACACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGC-GGGAGCCTCGGACACCATCGGCAACC
* * *
56428083 TAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
** * * * * *
56428125 TAGGGGCTCGGAT-GTGCGGGAGGCTCAGACACCATCGGTAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * * **
56428168 TAAGCCATTGGTCGCGCGGAAGCCTCGGGCACCATCATC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * * *
56428210 TCGG-TGTTCGGAT-GTGCGGGAGCCTCGGGCACCATCGACAGA-A
1 TAGGCCCTT-GG-TCGTGCGGGAGCCTCGGACACCATCGGCA-ACC
* ** *
56428253 TAGGCCCTTCGTCGTGCAAGAGCCTCGGGCACCATCG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCG
56428290 ACACCTTTGT
Statistics
Matches: 971, Mismatches: 236, Indels: 127
0.73 0.18 0.10
Matches are distributed among these distances:
41 26 0.03
42 401 0.41
43 535 0.55
44 9 0.01
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
Found at i:56427117 original size:85 final size:84
Alignment explanation
Indices: 56426977--56428408 Score: 715
Period size: 85 Copynumber: 16.8 Consensus size: 84
56426967 TCCGGCAGCA
* * * * *
56426977 TAGGCCCTTGGTCGTGCAGGAGCCTCAGGCACCATCGACACCTTGGTG-CTAGGATGTGTGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-GCCT-GGATGTGCGGGAG
56427041 CCTCGGACACCATCGGCAACC
64 CCTCGGACACCATCGGCAACC
* * *
56427062 TAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATTGGCACCTAGGTGCCTGGATGTGTC-GGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-GCCTGGATGTG-CGGGAG
* * *
56427126 CCTCGAACACCATCGACAAAC
64 CCTCGGACACCATCGGCAACC
* **
56427147 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAACCTA-GGCTCTTGG-TCGTGCAAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGGC-C-TGGAT-GTGCGGG
*
56427210 AGCCTCGGGCACCATCGGC-ACC
62 AGCCTCGGACACCATCGGCAACC
* * * ** * * * * *
56427232 TCGGCGCTCGGAGGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGTGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGGCC-TGGAT-GTGCGGGA
* *
56427296 GCCTCGGGCACCATCGAC-ACC
63 GCCTCGGACACCATCGGCAACC
* * * * * * * *
56427317 TAGGCACTCAGAT-GTGCGGGAGCCTCGGACACCATCGGTAAACTAGGCCCGTGG-TCGTACGGG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGGCC-TGGAT-GTGCGGG
* * *
56427380 AGCCTCGGGCACCATCGGTAAAC
62 AGCCTCGGACACCATCGGCAACC
* * * *
56427403 TAGGCCCTTCGTCTTACGGGAGCCTCGGGCACCATCGGCAAACTA-GGCCTTTGG-TCGTGCGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGGCC--TGGAT-GTGCGGG
*
56427466 AGCCTC-GAGCACCATCGAC-ACC
62 AGCCTCGGA-CACCATCGGCAACC
* ** * * * * *
56427488 TTGGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCT-TAGTCGTG-GAG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGGCCTGGA-T-GTGCGGG
*
56427550 AGCCAC-GAGCACCATCGGC-ACC
62 AGCCTCGGA-CACCATCGGCAACC
* * * * * ** * * *
56427572 TAGGCGCTCGGAT-GTGCGAGCGCCTCTGATACCATCAGCAAACTAGGCCCTTGG-TCGTGCGGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGGCC-TGGAT-GTGCGGG
*
56427635 AGCCTCGGGCACCATCGGC-ACC
62 AGCCTCGGACACCATCGGCAACC
* *** * * ** * * **
56427657 TCGATGCTTGGAT-GTGCGAGAGCCTCAGGCACCATCGGCAGAATA-GGCACTTCG-TCGTACAA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGGC-C-TGGAT-GTGCGG
* * *
56427719 GAGCCTCGGCCACCATTGG-GACC
61 GAGCCTCGGACACCATCGGCAACC
** * * * * * * * *
56427742 TAGGTGCTTGGAT-GTGCGGGAGCCTCGGACATCATCGGAAAACTAGGCCCTTGG-TCCTTCGAG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGGCC-TGGAT-GTGCGGG
* *
56427805 AGCCTCGGGCACCATCGGCAAAC
62 AGCCTCGGACACCATCGGCAACC
* ** * *
56427828 TAGGCCCTTGGTCGTGCGAGAGTTTCGGGCACCATCGGCACCT-GGCCGCTCGGATATGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGGC-CT-GGATGTGCGGGAG
* * *
56427892 CATCGGACAACATCGGCAAAC
64 CCTCGGACACCATCGGCAACC
* ** * * * * *
56427913 TAGGCCCTTGGTCGTACGGGCA-CCTCGACCAACATTGGCCCCTCGGTG-CTATGATGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGG-AGCCTCGGGCACCATCGGCACCTAGG-GCCT-GGATGTGCGGGA
* *** * *
56427976 GCCTCAGACAATGTCAGCATCC
63 GCCTCGGACACCATCGGCAACC
* * ** * * *
56427998 TAGGCCCTTGGTCGTGCGGGAGTCTCGAGCACCATCAACACCTTGGTGCTTGGATGTGCAGGAAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-GCCTGGATGTGC-GGGAG
56428063 -CTCGGACACCATCGGCAACC
64 CCTCGGACACCATCGGCAACC
* * * *
56428083 TAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGGCACCTAGGGGCTCGGATGTGCGGGAGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGGCCT-GGATGTGCGGGAGC
* * *
56428148 CTCAGACACCATCGGTAAAC
65 CTCGGACACCATCGGCAACC
* * * * ** * *
56428168 TAAGCCATTGGTCGCGCGGAAGCCTCGGGCACCATCATCACCTCGGTG-TTCGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-GCCT-GGATGTGCGGGAG
* * *
56428232 CCTCGGGCACCATCGACAGA-A
64 CCTCGGACACCATCGGCA-ACC
* ** * * *
56428253 TAGGCCCTTCGTCGTGCAAGAGCCTCGGGCACCATCGACACCTTTGTGG-CTCCGATGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-TAG-GGCCT-GGATGTGCGGGA
*
56428317 GCCTC-GAGCACCATGGGC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * * * * * *
56428338 TTGGTAGCTCAGAT-GTGCGGGAGCCTTGGACACCATCGGCAACCTTGGTGCTTGGATGTGCGGG
1 TAGG-CCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-GCCTGGATGTGCGGG
56428402 AGCCTCG
62 AGCCTCG
56428409 AGCACTATCA
Statistics
Matches: 1059, Mismatches: 235, Indels: 104
0.76 0.17 0.07
Matches are distributed among these distances:
84 86 0.08
85 751 0.71
86 216 0.20
87 6 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.19
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGGCCTGGATGTGCGGGAGCC
TCGGACACCATCGGCAACC
Found at i:56427188 original size:128 final size:127
Alignment explanation
Indices: 56427038--56428203 Score: 849
Period size: 128 Copynumber: 9.1 Consensus size: 127
56427028 GGATGTGTGG
* *
56427038 GAGCCTCGGACACCATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATTGGCAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
* * *
56427103 CTAGGTGCCTGGATGTGTC-GGAGCCTCGAACACCATCGACAAACTAGGCCCTTGGTCGTGCGG
66 CTAGG-GCCTGGATGTG-CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA
* *
56427166 GAGCCTCGGGCACCATCAGCAACCTAGGCTC-TTGGTCGTGCAAGAGCCTCGGGCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGC-CATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
* * * * *
56427230 CCT-CGGCGCTCGGAGGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGTGA
65 CCTAGGGC-CT-GGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA
* * * * *
56427294 GAGCCTCGGGCACCATCGAC-ACCTAGG-CACTCAGAT-GTGCGGGAGCCTCGGACACCATCGGT
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCA-T-TGGTCGTGCGAGAGCCTCGGGCACCATCGG-
* * * * * * * * *
56427356 AAACTAGGCCCGTGG-TCGTACGGGAGCCTCGGGCACCATCGGTAAACTAGGCCCTTCGTCTTAC
63 CACCTAGGGCC-TGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGC
*
56427420 GG
126 GA
* * * * *
56427422 GAGCCTCGGGCACCATCGGCAAACTAGGCCTTTGGTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
* * * * *
56427487 CTTGGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTG-GA
66 CTAGG-GCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA
* * * * * ** *
56427549 GAGCCACGAGCACCATCGGC-ACCTAGGCGC-TCGGAT-GTGCGAGCGCCTCTGATACCATCAGC
1 GAGCCTCGGGCACCATCGGCAACCTAGGC-CATTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC
* * * * * ***
56427611 AAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGATGCTTGGAT-GTG
64 -ACCTAGGGCC-TGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTG
56427673 CGA
125 CGA
* * * * * * * *
56427676 GAGCCTCAGGCACCATCGGCAGA-ATAGG-CACTTCGTCGTACAAGAGCCTCGGCCACCATTGGG
1 GAGCCTCGGGCACCATCGGCA-ACCTAGGCCA-TTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* * * * *
56427739 ACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACATCATCGGAAAACTAGGCCCTTGGTCCTTCGA
64 ACCTAGG-GCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA
* * **
56427804 GAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGTTTCGGGCACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
* * * * * *
56427869 CT-GGCCGCTCGGATATGCGGGAGCATCGGACAACATCGGCAAACTAGGCCCTTGGTCGTACGG
66 CTAGGGC-CT-GGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA
** * * * * * * * * * *** *
56427932 GCA-CCTCGACCAACATTGGC-CCCTCGGTGC-TATGAT-GTGCGGGAGCCTCAGACAATGTCAG
1 G-AGCCTCGGGCACCATCGGCAACCTAGG-CCAT-TGGTCGTGCGAGAGCCTCGGGCACCATCGG
* * ** * * **
56427993 CATCCTAGGCCCTTGG-TCGTGCGGGAGTCTC-GAGCACCATCAAC-ACCTTGGTGCTTGGAT-G
63 CA-CCTAGGGCC-TGGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCG
56428054 TGC-A
123 TGCGA
* * *
56428058 GGAAG-CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGGC
1 -G-AGCCTCGGGCACCATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* * * * * * *
56428122 ACCTAGGGGCTCGGATGTGCGGGAGGCTCAGACACCATCGGTAAACTAAGCCATTGGTCGCGCG-
64 ACCTAGGGCCT-GGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA
56428186 GAAGCCTCGGGCACCATC
1 G-AGCCTCGGGCACCATC
56428204 ATCACCTCGG
Statistics
Matches: 795, Mismatches: 186, Indels: 114
0.73 0.17 0.10
Matches are distributed among these distances:
125 1 0.00
126 47 0.06
127 235 0.30
128 468 0.59
129 43 0.05
130 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (127 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
CTAGGGCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA
Found at i:56427976 original size:213 final size:211
Alignment explanation
Indices: 56426977--56428034 Score: 951
Period size: 213 Copynumber: 5.0 Consensus size: 211
56426967 TCCGGCAGCA
* * * * *
56426977 TAGGCCCTTGGTCGTGC-AGGAGCCTCAGGCACCATCGACACCTTGGTGCTAGGATGTGTGGGAG
1 TAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGCACC-TGGCGCTCGGATGTGCGGGAG
* *
56427041 CCTCGGACACCATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATTGGCACCTA
64 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATTGGCACCTA
* * *
56427106 GGTGCCTGGATGTGTC-GGAGCCTCGAACACCATC-GACAAACTAGGCCCTTGGTCGTGCGGGAG
129 GGTG-CTTGATGTG-CGGGAGCCTCGGACACCATCGGA-AAACTAGGCCCTTGGTCGTGCGAGAG
*
56427169 CCTCGGGCACCATCAGCAACC
191 CCTCGGGCACCATCAGCAAAC
* * * *
56427190 TAGGCTCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTCGGCGCTCGGAGGTACGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGCGCTCGGATGTGCGGGAGC
* * * *
56427255 CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGACACCTAG
65 CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATTGGCACCTAG
** * * * * *
56427320 GCACTCAGATGTGCGGGAGCCTCGGACACCATCGGTAAACTAGGCCCGTGGTCGTACGGGAGCCT
130 GTGCT-TGATGTGCGGGAGCCTCGGACACCATCGGAAAACTAGGCCCTTGGTCGTGCGAGAGCCT
* *
56427385 CGGGCACCATCGGTAAAC
194 CGGGCACCATCAGCAAAC
* * * * * *
56427403 TAGGCCCTTCGTCTTACGGGAGCCTCGGGCACCATCGGCAAACTAGGC-CTTTGG-TCGTGCGGG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCT-GGCGC-TCGGAT-GTGCGGG
* * ** * * * *
56427466 AGCCTC-GAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCGGCA
62 AGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATTGGC-
** * * * * * *
56427528 ACCTAGGCCCTT-AGTCGTG-GAGAGCCAC-GAGCACCATCGG-CACCTAGGCGCTCGGAT-GTG
124 ACCTAGGTGCTTGA-T-GTGCGGGAGCCTCGGA-CACCATCGGAAAACTAGGCCCTTGG-TCGTG
* * **
56427588 CGAGCGCCTCTGATACCATCAGCAAAC
185 CGAGAGCCTCGGGCACCATCAGCAAAC
* ** * *
56427615 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGATGCTTGGATGTGCGAGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGCGCTCGGATGTGCGGGAGC
* * * * * *
56427680 CTCAGG-CACCATCGGCAGA-ATAGGCACTTCGTCGTACAAGAGCCTCGGCCACCATTGGGACCT
65 CTC-GGACACCATCGGCA-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATTGGCACCT
* * *
56427743 AGGTGCTTGGATGTGCGGGAGCCTCGGACATCATCGGAAAACTAGGCCCTTGGTCCTTCGAGAGC
128 AGGTGCTT-GATGTGCGGGAGCCTCGGACACCATCGGAAAACTAGGCCCTTGGTCGTGCGAGAGC
*
56427808 CTCGGGCACCATCGGCAAAC
192 CTCGGGCACCATCAGCAAAC
** *
56427828 TAGGCCCTTGGTCGTGCGAGAGTTTCGGGCACCATCGGCACCTGGCCGCTCGGATATGCGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGG-CGCTCGGATGTGCGGGAGC
* * * * * * * * *
56427893 ATCGGACAACATCGGCAAACTAGGCCCTTGGTCGTACGGGCA-CCTCGACCAACATTGGCCCCTC
65 CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG-AGCCTCGGCCACCATTGGCACCTA
* *** * * ** * *
56427957 GGTGCTATGATGTGCGGGAGCCTCAGACAATGTCAGCATCCTAGGCCCTTGGTCGTGCGGGAGTC
129 GGTGCT-TGATGTGCGGGAGCCTCGGACACCATCGGAAAACTAGGCCCTTGGTCGTGCGAGAGCC
*
56428022 TCGAGCACCATCA
193 TCGGGCACCATCA
56428035 ACACCTTGGT
Statistics
Matches: 682, Mismatches: 130, Indels: 66
0.78 0.15 0.08
Matches are distributed among these distances:
211 43 0.06
212 124 0.18
213 467 0.68
214 48 0.07
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (211 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGCGCTCGGATGTGCGGGAGCC
TCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATTGGCACCTAGG
TGCTTGATGTGCGGGAGCCTCGGACACCATCGGAAAACTAGGCCCTTGGTCGTGCGAGAGCCTCG
GGCACCATCAGCAAAC
Found at i:56428158 original size:42 final size:42
Alignment explanation
Indices: 56427006--56428444 Score: 455
Period size: 43 Copynumber: 33.8 Consensus size: 42
56426996 GAGCCTCAGG
* * * * * *
56427006 CACCATCGACACCTTGGTGCTAGGATGTGTGGGAGCCTCGGA
1 CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
* * *
56427048 CACCATCGGCAACCTAGGC-CATTGG-TCGTGCGAGAGCCTCGGG
1 CACCATCGGC-ACCTAGGCGC-TTGGAT-GTGCGGGAGGCTCGGA
* * * * *
56427091 CACCATTGGCACCTAGGTGCCTGGATGTGTC-GGAGCCTCGAA
1 CACCATCGGCACCTAGGCGCTTGGATGTG-CGGGAGGCTCGGA
* * * * *
56427133 CACCATCGACAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
1 CACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* * ** * *
56427176 CACCATCAGCAACCTAGGCTCTTGG-TCGTGCAAGAGCCTCGGG
1 CACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* * * * *
56427219 CACCATCGGCACCTCGGCGCTCGGAGGTACGGGAGCCTCGGA
1 CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
* * * * *
56427261 CACCATCGGCAACCTAGGCCCTTGG-TCGTGTGAGAGCCTCGGG
1 CACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* * ** *
56427304 CACCATCGACACCTAGGCACTCAGATGTGCGGGAGCCTCGGA
1 CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
* * * * * * *
56427346 CACCATCGGTAAACTAGGCCCGTGG-TCGTACGGGAGCCTCGGG
1 CACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* * * * * * * *
56427389 CACCATCGGTAAACTAGGCCCTTCG-TCTTACGGGAGCCTCGGG
1 CACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* *
56427432 CACCATCGGCAAACTAGGC-CTTTGG-TCGTGCGGGAGCCTC-GA
1 CACCATCGGC-ACCTAGGCGC-TTGGAT-GTGCGGGAGGCTCGGA
* * * **
56427474 GCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCGGA
1 -CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
* * * * *
56427517 CACCATCGGCAACCTAGGCCCTTAG-TCGTG-GAGAGCCAC-GA
1 CACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* * * * *
56427558 GCACCATCGGCACCTAGGCGCTCGGATGTGCGAGCGCCTCTGA
1 -CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
* * * * * *
56427601 TACCATCAGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
1 CACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* ** * *
56427644 CACCATCGGCACCTCGATGCTTGGATGTGCGAGAGCCTCAGG-
1 CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTC-GGA
** * * * ** * *
56427686 CACCATCGGCAGAATAGGCACTTCG-TCGTACAAGAGCCTCGGC
1 CACCATCGGCA-CCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* * * *
56427729 CACCATTGGGACCTAGGTGCTTGGATGTGCGGGAGCCTCGGA
1 CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
* * * * * * * * *
56427771 CATCATCGGAAAACTAGGCCCTTGG-TCCTTCGAGAGCCTCGGG
1 CACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* * * ** *
56427814 CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGTTTCGGG
1 CACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* *
56427857 CACCATCGGCACCT-GGCCGCTCGGATATGCGGGA-GCATCGGA
1 CACCATCGGCACCTAGG-CGCTTGGATGTGCGGGAGGC-TCGGA
* * * * *
56427899 CAACATCGGCAAACTAGGCCCTTGG-TCGTACGGGCA-CCTC-GA
1 CACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGG-AGGCTCGGA
* * * * * * *
56427941 CCAACATTGGCCCCTCGGTGCTAT-GATGTGCGGGAGCCTCAGA
1 -CACCATCGGCACCTAGGCGCT-TGGATGTGCGGGAGGCTCGGA
*** * * *
56427984 CAATGTCAGCATCCTAGGCCCTTGG-TCGTGCGGGAGTCTC-GA
1 CACCATCGGCA-CCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
** * * * *
56428026 GCACCATCAACACCTTGGTGCTTGGATGTGCAGGAAGCTCGGA
1 -CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
* * * * *
56428069 CACCATCGGCAACCTAGGCCCTTGG-TCGTGTGAGAGCCTCGGG
1 CACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* * *
56428112 CACCATCGGCACCTAGGGGCTCGGATGTGCGGGAGGCTCAGA
1 CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
* * * * * * *
56428154 CACCATCGGTAAACTAAGC-CATTGG-TCGCGCGGAAGCCTCGGG
1 CACCATCGG-CACCTAGGCGC-TTGGAT-GTGCGGGAGGCTCGGA
** * * * *
56428197 CACCATCATCACCTCGGTG-TTCGGATGTGCGGGAGCCTCGGG
1 CACCATCGGCACCTAGGCGCTT-GGATGTGCGGGAGGCTCGGA
* ** * * ** * *
56428239 CACCATCGACAGAATAGGCCCTTCG-TCGTGCAAGAGCCTCGGG
1 CACCATCGGCA-CCTAGGCGCTTGGAT-GTGCGGGAGGCTCGGA
* * ** *
56428282 CACCATCGACACCTTTGTG-GCTCCGATGTGCGGGAGCCTC-GA
1 CACCATCGGCACC-TAG-GCGCTTGGATGTGCGGGAGGCTCGGA
* * * ** * *
56428324 GCACCATGGGCACCTTGGTAGCTCAGATGTGCGGGAGCCTTGGA
1 -CACCATCGGCACCTAGG-CGCTTGGATGTGCGGGAGGCTCGGA
* * *
56428368 CACCATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTC-GA
1 CACCATCGGC-ACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
* * * * *
56428410 GCACTATCAGCACCTTGGTGCCTGGGATGTGCGGG
1 -CACCATCGGCACCTAGGCG-CTTGGATGTGCGGG
56428445 CTAAAGAAAA
Statistics
Matches: 1071, Mismatches: 248, Indels: 155
0.73 0.17 0.11
Matches are distributed among these distances:
41 22 0.02
42 401 0.37
43 631 0.59
44 17 0.02
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.19
Consensus pattern (42 bp):
CACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGGCTCGGA
Found at i:56432084 original size:23 final size:24
Alignment explanation
Indices: 56432019--56432076 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
56432009 AATATTTTTG
*
56432019 TATTTTTGTATAAGATAATTGGTA
1 TATTTTTGTATAAGATAATCGGTA
56432043 TATTTTTGTATAAGATAATCGGTA
1 TATTTTTGTATAAGATAATCGGTA
56432067 TATTTTTGTA
1 TATTTTTGTA
56432077 CTAATAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.31, C:0.02, G:0.16, T:0.52
Consensus pattern (24 bp):
TATTTTTGTATAAGATAATCGGTA
Found at i:56438091 original size:50 final size:52
Alignment explanation
Indices: 56438014--56438117 Score: 124
Period size: 50 Copynumber: 2.0 Consensus size: 52
56438004 CAAGAACACT
* ** *
56438014 CCTGGGCACCAAGTTCCTATTCCGTAGGC-TAACATCC-CTCCAAAAACATG
1 CCTGGGCACCAAGTGCCTAAGCCGTAGGCTTAACATCCTCCCCAAAAACATG
* *
56438064 CCTGGGCACCAAGTGCC-AAGCCTGTAGGCTTTACATCCTCCCCAGAAACATG
1 CCTGGGCACCAAGTGCCTAAGCC-GTAGGCTTAACATCCTCCCCAAAAACATG
56438116 CC
1 CC
56438118 AAGATCACTA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 3 0.07
50 22 0.49
51 7 0.16
52 13 0.29
ACGTcount: A:0.26, C:0.36, G:0.18, T:0.20
Consensus pattern (52 bp):
CCTGGGCACCAAGTGCCTAAGCCGTAGGCTTAACATCCTCCCCAAAAACATG
Found at i:56441501 original size:15 final size:15
Alignment explanation
Indices: 56441481--56441509 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
56441471 CCATGGAGCA
56441481 AGCATCGAAAAAGAG
1 AGCATCGAAAAAGAG
56441496 AGCATCGAAAAAGA
1 AGCATCGAAAAAGA
56441510 AAATGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.24, T:0.07
Consensus pattern (15 bp):
AGCATCGAAAAAGAG
Found at i:56442519 original size:19 final size:20
Alignment explanation
Indices: 56442485--56442523 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
56442475 GCAAGCTAAT
56442485 TTTAGCTCGATTTCAGCTCC
1 TTTAGCTCGATTTCAGCTCC
56442505 TTTAGCTCG-TTTCAGCTCC
1 TTTAGCTCGATTTCAGCTCC
56442524 AACAAGCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.13, C:0.31, G:0.15, T:0.41
Consensus pattern (20 bp):
TTTAGCTCGATTTCAGCTCC
Found at i:56442551 original size:20 final size:20
Alignment explanation
Indices: 56442528--56442566 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
56442518 AGCTCCAACA
*
56442528 AGCTCATTTGAGCTCAATTC
1 AGCTCATTCGAGCTCAATTC
56442548 AGCTCATTCGAGCTCAATT
1 AGCTCATTCGAGCTCAATT
56442567 TAGTATCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (20 bp):
AGCTCATTCGAGCTCAATTC
Found at i:56445127 original size:25 final size:25
Alignment explanation
Indices: 56445094--56445231 Score: 92
Period size: 25 Copynumber: 5.6 Consensus size: 25
56445084 TTACATGTAT
* *
56445094 GCTCACACGAGCTATGAATCGGTAT
1 GCTCTCACGAGCTATGAATCGGTAA
* *
56445119 GCTCTCACGAG-TAGTAAATTGGTAA
1 GCTCTCACGAGCTA-TGAATCGGTAA
* *
56445144 GCTCAT-ACAAGCTGA-GAATCGATAA
1 GCTC-TCACGAGCT-ATGAATCGGTAA
*
56445169 CCTCTCACGAG--ATGCAATCGGTAA
1 GCTCTCACGAGCTATG-AATCGGTAA
56445193 GCTCAT-ACGAGCTGA-GAATCGGTAA
1 GCTC-TCACGAGCT-ATGAATCGGTAA
* *
56445218 ACTCACACGAGCTA
1 GCTCTCACGAGCTA
56445232 CAATCGATAA
Statistics
Matches: 87, Mismatches: 14, Indels: 25
0.69 0.11 0.20
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 20 0.23
25 60 0.69
26 3 0.03
27 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (25 bp):
GCTCTCACGAGCTATGAATCGGTAA
Found at i:56445187 original size:24 final size:24
Alignment explanation
Indices: 56445160--56445241 Score: 67
Period size: 24 Copynumber: 3.4 Consensus size: 24
56445150 ACAAGCTGAG
* *
56445160 AATCGATAACCTCTCACGAGATGC
1 AATCGATAAACTCTCACGAGCTGC
* * *
56445184 AATCGGTAAGCTCAT-ACGAGCTGAG
1 AATCGATAAACTC-TCACGAGCTG-C
* * *
56445209 AATCGGTAAACTCACACGAGCTAC
1 AATCGATAAACTCTCACGAGCTGC
56445233 AATCGATAA
1 AATCGATAA
56445242 TCCCTAATGA
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
24 26 0.57
25 20 0.43
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (24 bp):
AATCGATAAACTCTCACGAGCTGC
Found at i:56445206 original size:49 final size:49
Alignment explanation
Indices: 56445139--56445237 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 49
56445129 GTAGTAAATT
* * *
56445139 GGTAAGCTCATACAAGCTGAGAATCGATAACCTCTCACGAGATGCAATC
1 GGTAAGCTCATACAAGCTGAGAATCGATAAACTCACACGAGATACAATC
* * *
56445188 GGTAAGCTCATACGAGCTGAGAATCGGTAAACTCACACGAGCTACAATC
1 GGTAAGCTCATACAAGCTGAGAATCGATAAACTCACACGAGATACAATC
56445237 G
1 G
56445238 ATAATCCCTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.19
Consensus pattern (49 bp):
GGTAAGCTCATACAAGCTGAGAATCGATAAACTCACACGAGATACAATC
Found at i:56463678 original size:20 final size:20
Alignment explanation
Indices: 56463629--56463678 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
56463619 CAAGATGTAC
* *
56463629 GGGTAGAAGTGGACTTGTAT
1 GGGTAGAAGTGGACCTATAT
* *
56463649 GGATAAAAGTGGACCTATAT
1 GGGTAGAAGTGGACCTATAT
56463669 GGGTAGAAGT
1 GGGTAGAAGT
56463679 CCCAAAAGTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.06, G:0.36, T:0.26
Consensus pattern (20 bp):
GGGTAGAAGTGGACCTATAT
Found at i:56466642 original size:21 final size:19
Alignment explanation
Indices: 56466594--56466642 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
56466584 GTTTGTTGTT
*
56466594 TTGGGTTT-ATTTGGGTTA
1 TTGGGTTTGATTTGGGTAA
56466612 TTGGGTTTTGATTTTGGGTAA
1 TTGGG-TTTGA-TTTGGGTAA
56466633 TTCGGGTTTG
1 TT-GGGTTTG
56466643 GGCTTGTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.19
19 3 0.12
20 1 0.04
21 14 0.54
22 3 0.12
ACGTcount: A:0.10, C:0.02, G:0.35, T:0.53
Consensus pattern (19 bp):
TTGGGTTTGATTTGGGTAA
Found at i:56467312 original size:45 final size:45
Alignment explanation
Indices: 56467174--56467487 Score: 160
Period size: 45 Copynumber: 7.0 Consensus size: 45
56467164 GTAGTCAATT
* * * * * *
56467174 TGCTTCGTTGCCAGTACAGAAAGACAATATCTGCTGTTTTTAGTC
1 TGCTTCGCTGCCAATACAGGAAGGCAAGATCTGCTGTTTTCAGTC
* * * * * * * *
56467219 TACTCCACTGCAAACT-CAGGGAGGCAAG-GCTGGTGTTCTTC-GAAC
1 TGCTTCGCTGCCAA-TACAGGAAGGCAAGATCTGCTGTT-TTCAG-TC
* *
56467264 TGCTTCGTTGCCAATACAGGAAGGCAAGATCTACTGTTTTCAGTC
1 TGCTTCGCTGCCAATACAGGAAGGCAAGATCTGCTGTTTTCAGTC
* * * * * *
56467309 TGC-TCTGCTGCAAACT-CAGGGAGGCAAG-GCTGGTG-TCTCTAATC
1 TGCTTC-GCTGCCAA-TACAGGAAGGCAAGATCTGCTGTTTTC-AGTC
* * * *
56467353 TGCTTCGTTGCCAATACAGGAAGGCAAGATCTACTGTTTTTAGCC
1 TGCTTCGCTGCCAATACAGGAAGGCAAGATCTGCTGTTTTCAGTC
* * * * * * * *
56467398 TGCTCCGCTACAAACT-CAGGGAGGCAAG-GCTGGTGTCTTCAATC
1 TGCTTCGCTGCCAA-TACAGGAAGGCAAGATCTGCTGTTTTCAGTC
* * * *
56467442 TGATTCGCTGCCAATATAGGAATGCAAGATCTGCTGTTTTAAGTC
1 TGCTTCGCTGCCAATACAGGAAGGCAAGATCTGCTGTTTTCAGTC
56467487 T
1 T
56467488 ACTCCACTGC
Statistics
Matches: 187, Mismatches: 66, Indels: 32
0.66 0.23 0.11
Matches are distributed among these distances:
43 5 0.03
44 66 0.35
45 104 0.56
46 12 0.06
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (45 bp):
TGCTTCGCTGCCAATACAGGAAGGCAAGATCTGCTGTTTTCAGTC
Found at i:56467677 original size:89 final size:89
Alignment explanation
Indices: 56467176--56468227 Score: 1012
Period size: 89 Copynumber: 11.8 Consensus size: 89
56467166 AGTCAATTTG
* * * * * * ** **
56467176 CTTCGTTGCCAGTACAGAAAGACAATATCTGCTGTTTTTAGTCTACTCCACTGCAAACTCAGGGA
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC-TGCTCAGGGA
** * *
56467241 GGCAAGGCTGGTG-T-TCTTCGAACTG
65 GATAAGGCT--TGCTATCTTCGATCTA
* * * * ** * ** **
56467266 CTTCGTTGCCAATACAGGAAGGCAAGATCTACTGTTTTCAGTCTGCTCTGCTGCAAACTCAGGGA
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC-TGCTCAGGGA
** * * * *
56467331 GGCAAGGC-TGGTGTC-TCTAATCTG
65 GATAAGGCTTGCTATCTTC-GATCTA
* * * * * * * * * **
56467355 CTTCGTTGCCAATACAGGAAGGCAAGATCTACTGTTTTTAGCCTGCTCCGCTACAAACTCAGGGA
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC-TGCTCAGGGA
** * * *
56467420 GGCAAGGC-TGGTGTCTTCAATCTGA
65 GATAAGGCTTGCTATCTTCGATCT-A
* * * ** *
56467445 -TTCGCTGCCAATATAGGAATG-CAAGATCTGCTGTTTT-AAGTCTACTCCACTGCAAACTTAGG
1 CTTCGCTGCCAATACAGGAA-GACAAGATCTGCTATTTTCAA-CCTACTCCACTGC-TGCTCAGG
** * * *
56467507 GAGGCAAGGCTAGTG-T-TCTTTGATTTG
63 GAGATAAGGCT--TGCTATCTTCGATCTA
* * * ** *
56467534 CTTTGCTACCAATATAGGAAGGTAAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
* *
56467599 ATAAGGCTTGCTATCCTCGATTTA
66 ATAAGGCTTGCTATCTTCGATCTA
* *
56467623 CTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTTAACCTACTCCACTGCTGCTCAGGGAG
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
* * * *
56467688 AAAAAGCTTCCTATCCTCGATCTA
66 ATAAGGCTTGCTATCTTCGATCTA
** * * * *
56467712 CTTCATTGCTAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTGCCCAGAGAG
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
* ***
56467777 ATAAGGC-CGGGGTCTTCGATCTA
66 ATAAGGCTTGCTATCTTCGATCTA
** * *
56467800 CTTTACTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGCTTAGGGAG
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
56467865 ATAAGGCTTGCTATCTTCGATCTA
66 ATAAGGCTTGCTATCTTCGATCTA
* *
56467889 CTTCGCTGCAAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
*
56467954 ATAAGGCTTGCTATCTTGGATCTA
66 ATAAGGCTTGCTATCTTCGATCTA
* *
56467978 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTACTCGGGGAG
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
56468043 ATAAGGCTTGCTATCTTCGATCTA
66 ATAAGGCTTGCTATCTTCGATCTA
* *
56468067 CTTCGCTGCAAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
***
56468132 ATAAGGC-TGGGGTCTTCGATCTA
66 ATAAGGCTTGCTATCTTCGATCTA
* * * *
56468155 CTCCACTGCTAATACAGGAAGACAAGATCTGCTATTTTCAACTTACTCCACTGCTGCTCAGGGAG
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
56468220 ATAAGGCT
66 ATAAGGCT
56468228 GGGGTCTTCG
Statistics
Matches: 840, Mismatches: 105, Indels: 35
0.86 0.11 0.04
Matches are distributed among these distances:
87 4 0.00
88 159 0.19
89 556 0.66
90 116 0.14
91 3 0.00
92 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (89 bp):
CTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAG
ATAAGGCTTGCTATCTTCGATCTA
Found at i:56467955 original size:355 final size:355
Alignment explanation
Indices: 56467557--56468227 Score: 1117
Period size: 355 Copynumber: 1.9 Consensus size: 355
56467547 ATAGGAAGGT
*
56467557 AAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCCTCGATTT
1 AAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCCTCGATCT
* *
56467622 ACTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTTAACCTACTCCACTGCTGCTCAGGGA
66 ACTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTACTCAGGGA
* *
56467687 GAAAAAGCTTCCTATCCTCGATCTACTTCATTGCTAATACAGGAAGACAAGATCTGTTATTTTCA
131 GAAAAAGCTTCCTATCCTCGATCTACTTCACTGCAAATACAGGAAGACAAGATCTGTTATTTTCA
**
56467752 ACCTACTCCACTGCTGCCCAGAGAGATAAGGCCGGGGTCTTCGATCTACTTTACTGCCAATACAG
196 ACCTACTCCACTGCTGCCCAGAGAGATAAGGCCGGGGTCTTCGATCTACTCCACTGCCAATACAG
*
56467817 GAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGCTTAGGGAGATAAGGCTTGCTATCTT
261 GAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCTT
56467882 CGATCTACTTCGCTGCAAATACAGGAAGAC
326 CGATCTACTTCGCTGCAAATACAGGAAGAC
** * *
56467912 AAGATCTGTTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTGGATCT
1 AAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCCTCGATCT
* *
56467977 ACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTACTCGGGGA
66 ACTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTACTCAGGGA
* * * * *
56468042 GATAAGGCTTGCTATCTTCGATCTACTTCGCTGCAAATACAGGAAGACAAGATCTGTTATTTTCA
131 GAAAAAGCTTCCTATCCTCGATCTACTTCACTGCAAATACAGGAAGACAAGATCTGTTATTTTCA
* * * *
56468107 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGGGTCTTCGATCTACTCCACTGCTAATACAG
196 ACCTACTCCACTGCTGCCCAGAGAGATAAGGCCGGGGTCTTCGATCTACTCCACTGCCAATACAG
* *
56468172 GAAGACAAGATCTGCTATTTTCAACTTACTCCACTGCTGCTCAGGGAGATAAGGCT
261 GAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
56468228 GGGGTCTTCG
Statistics
Matches: 291, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
355 291 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (355 bp):
AAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCCTCGATCT
ACTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTACTCAGGGA
GAAAAAGCTTCCTATCCTCGATCTACTTCACTGCAAATACAGGAAGACAAGATCTGTTATTTTCA
ACCTACTCCACTGCTGCCCAGAGAGATAAGGCCGGGGTCTTCGATCTACTCCACTGCCAATACAG
GAAGACAAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCTT
CGATCTACTTCGCTGCAAATACAGGAAGAC
Found at i:56468157 original size:43 final size:43
Alignment explanation
Indices: 56468109--56468241 Score: 142
Period size: 44 Copynumber: 3.0 Consensus size: 43
56468099 TATTTTCAAC
56468109 CTACTCCACTGCTGCTCAGGGAGATAAGGCTGGGGTCTTCGAT
1 CTACTCCACTGCTGCTCAGGGAGATAAGGCTGGGGTCTTCGAT
** * * * *** * *
56468152 CTACTCCACTGCTAATACAGGAAGACAAGATCTGCTATTTTC-AA
1 CTACTCCACTGCTGCT-CAGGGAGATAAG-GCTGGGGTCTTCGAT
56468196 CTTACTCCACTGCTGCTCAGGGAGATAAGGCTGGGGTCTTCGAT
1 C-TACTCCACTGCTGCTCAGGGAGATAAGGCTGGGGTCTTCGAT
56468240 CT
1 CT
56468242 GCTCTCTGGG
Statistics
Matches: 66, Mismatches: 20, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
43 22 0.33
44 24 0.36
45 20 0.30
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (43 bp):
CTACTCCACTGCTGCTCAGGGAGATAAGGCTGGGGTCTTCGAT
Found at i:56468221 original size:266 final size:266
Alignment explanation
Indices: 56467557--56468227 Score: 1002
Period size: 266 Copynumber: 2.5 Consensus size: 266
56467547 ATAGGAAGGT
* *
56467557 AAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCCTCGATTT
1 AAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCT
* * *
56467622 ACTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTTAACCTACTCCACTGCTGCTCAGGGA
66 ACTTCGCTGCAAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGA
* * * * *
56467687 GAAAAAGCTTCCTATCCTCGATCTACTTCATTGCTAATACAGGAAGACAAGATCTGTTATTTTCA
131 GATAAGGCTTCCTATCCTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCA
* * * * *
56467752 ACCTACTCCACTGCTGCCCAGAGAGATAAGGCCGGGGTCTTCGATCTACTTTACTGCCAATACAG
196 ACCTACTCCACTGCTACCCAGAGAGATAAGGCCGCGATCTTCGATCTACTTCACTGCAAATACAG
56467817 GAAGAC
261 GAAGAC
*
56467823 AAGATCTACTATTTTCAACCTACTCCACTGCTGCTTAGGGAGATAAGGCTTGCTATCTTCGATCT
1 AAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCT
*
56467888 ACTTCGCTGCAAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTGCTCAGGGA
66 ACTTCGCTGCAAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGA
* * * *
56467953 GATAAGGCTTGCTATCTTGGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCA
131 GATAAGGCTTCCTATCCTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCA
* * * * * *
56468018 ACCTACTCCACTGCTACTCGGGGAGATAAGGCTTGCTATCTTCGATCTACTTCGCTGCAAATACA
196 ACCTACTCCACTGCTACCCAGAGAGATAAGGC-CGCGATCTTCGATCTACTTCACTGCAAATACA
56468083 GGAAGAC
260 GGAAGAC
** ***
56468090 AAGATCTGTTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGC-TGGGGTCTTCGATCT
1 AAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCT
* * * *
56468154 ACTCCACTGCTAATACAGGAAGACAAGATCTGCTATTTTCAACTTACTCCACTGCTGCTCAGGGA
66 ACTTCGCTGCAAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGA
56468219 GATAAGGCT
131 GATAAGGCT
56468228 GGGGTCTTCG
Statistics
Matches: 366, Mismatches: 38, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
266 288 0.79
267 78 0.21
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (266 bp):
AAGATCTACTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCT
ACTTCGCTGCAAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGA
GATAAGGCTTCCTATCCTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCA
ACCTACTCCACTGCTACCCAGAGAGATAAGGCCGCGATCTTCGATCTACTTCACTGCAAATACAG
GAAGAC
Found at i:56469498 original size:3 final size:3
Alignment explanation
Indices: 56469490--56469516 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
56469480 TAGCCTCTCC
56469490 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
56469517 TGGACACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:56470495 original size:19 final size:19
Alignment explanation
Indices: 56470485--56470544 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 19
56470475 TTTCTTTTCT
56470485 TTTTCTTTTTTTCATTTTA
1 TTTTCTTTTTTTCATTTTA
*
56470504 TTTTCTTTTTCCATCATTTTCA
1 TTTTCTTTTT--TTCATTTT-A
*
56470526 TTTTCATTTTTTTGATTTT
1 TTTTC-TTTTTTTCATTTT
56470545 TGATTTTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 10 0.29
21 13 0.38
22 6 0.18
23 5 0.15
ACGTcount: A:0.12, C:0.13, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTCTTTTTTTCATTTTA
Found at i:56470544 original size:8 final size:8
Alignment explanation
Indices: 56470533--56470561 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
56470523 TCATTTTCAT
56470533 TTTTTTGA
1 TTTTTTGA
56470541 -TTTTTGA
1 TTTTTTGA
56470548 TTTTTTGA
1 TTTTTTGA
56470556 TTTTTT
1 TTTTTT
56470562 TTGAAACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79
Consensus pattern (8 bp):
TTTTTTGA
Found at i:56474785 original size:29 final size:28
Alignment explanation
Indices: 56474727--56474824 Score: 83
Period size: 29 Copynumber: 3.5 Consensus size: 28
56474717 TAAATATAAT
*
56474727 ATAAATTAAAATATTAAAACAAATTTAA
1 ATAAATTAAAATATTAAAACAAATTGAA
* * *
56474755 ATAAATTAACAATATTGAAATAAGTTGAA
1 ATAAATTAA-AATATTAAAACAAATTGAA
* * * *
56474784 ATACATTAAAGATGTTAAAA-TATTTGAA
1 ATAAATTAAA-ATATTAAAACAAATTGAA
*
56474812 AGAAA-TAAAATAT
1 ATAAATTAAAATAT
56474825 CTATACGAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.05
27 4 0.07
28 19 0.34
29 30 0.54
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (28 bp):
ATAAATTAAAATATTAAAACAAATTGAA
Found at i:56475166 original size:9 final size:9
Alignment explanation
Indices: 56475137--56475193 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
56475127 TAATATTATC
*
56475137 AATAATAGC
1 AATAATAGT
56475146 AATAATAGT
1 AATAATAGT
*
56475155 AATAATATT
1 AATAATAGT
*
56475164 AATAATAAT
1 AATAATAGT
*
56475173 GAA-AGTAGT
1 -AATAATAGT
*
56475182 AATAATAAT
1 AATAATAGT
56475191 AAT
1 AAT
56475194 TTTAATAACA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
8 2 0.05
9 35 0.90
10 2 0.05
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.32
Consensus pattern (9 bp):
AATAATAGT
Found at i:56476795 original size:18 final size:17
Alignment explanation
Indices: 56476738--56476813 Score: 59
Period size: 18 Copynumber: 4.5 Consensus size: 17
56476728 TGTATTTTTG
*
56476738 TTTTTATA-ATATTTAT
1 TTTTTATATATTTTTAT
** *
56476754 AATTTATATATTTTAAAT
1 TTTTTATATATTTT-TAT
*
56476772 TGTTTATATATGTTTTAT
1 TTTTTATATAT-TTTTAT
*
56476790 TTTTTA-ATA-ATTTAT
1 TTTTTATATATTTTTAT
56476805 TTTTTATAT
1 TTTTTATAT
56476814 TTTAAAAAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
15 11 0.23
16 8 0.17
17 7 0.15
18 18 0.38
19 3 0.06
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
TTTTTATATATTTTTAT
Found at i:56477353 original size:30 final size:31
Alignment explanation
Indices: 56477319--56477395 Score: 97
Period size: 30 Copynumber: 2.5 Consensus size: 31
56477309 AAAATTTCGT
*
56477319 CCCTTAAAAGTTGGTAAAAAAAGTTTTGGG-
1 CCCTTAAAAGTTGGTAAAAAAACTTTTGGGA
* *
56477349 CCCTTAAAAGCT--AAAAAAAACTTTTGGGA
1 CCCTTAAAAGTTGGTAAAAAAACTTTTGGGA
56477378 CCCCTTAAAAGTTGGTAA
1 -CCCTTAAAAGTTGGTAA
56477396 TTTTTTTTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
28 14 0.37
30 22 0.58
32 2 0.05
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (31 bp):
CCCTTAAAAGTTGGTAAAAAAACTTTTGGGA
Found at i:56477839 original size:77 final size:78
Alignment explanation
Indices: 56477746--56477900 Score: 303
Period size: 77 Copynumber: 2.0 Consensus size: 78
56477736 TTAGATATAT
56477746 ATTGATATATGTAAAATAATTATATCTTTAATATAGGGAAGAAATCGATTTAAATTAACATAGTT
1 ATTGATATATGTAAAATAATTATATCTTTAATATAGGGAAGAAATCGATTTAAATTAACATAGTT
56477811 TTATGCTCTTTCG
66 TTATGCTCTTTCG
56477824 ATTGATATAT-TAAAATAATTATATCTTTAATATAGGGAAGAAATCGATTTAAATTAACATAGTT
1 ATTGATATATGTAAAATAATTATATCTTTAATATAGGGAAGAAATCGATTTAAATTAACATAGTT
56477888 TTATGCTCTTTCG
66 TTATGCTCTTTCG
56477901 TAAATTTTTT
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
77 67 0.87
78 10 0.13
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (78 bp):
ATTGATATATGTAAAATAATTATATCTTTAATATAGGGAAGAAATCGATTTAAATTAACATAGTT
TTATGCTCTTTCG
Found at i:56477876 original size:39 final size:39
Alignment explanation
Indices: 56477757--56477876 Score: 88
Period size: 39 Copynumber: 3.1 Consensus size: 39
56477747 TTGATATATG
56477757 TAAAATAATTATATCTTTAATATAGGGAAGAAATCGATT
1 TAAAATAATTATATCTTTAATATAGGGAAGAAATCGATT
* * * * *** * *
56477796 TAAATTAA-CATAGT-TTTATGCTCTTTCGATTGATAT--A-T
1 TAAAATAATTATA-TCTTTA--ATATAGGGA-AGAAATCGATT
56477834 TAAAATAATTATATCTTTAATATAGGGAAGAAATCGATT
1 TAAAATAATTATATCTTTAATATAGGGAAGAAATCGATT
56477873 TAAA
1 TAAA
56477877 TTAACATAGT
Statistics
Matches: 54, Mismatches: 18, Indels: 18
0.60 0.20 0.20
Matches are distributed among these distances:
36 4 0.07
37 4 0.07
38 17 0.31
39 21 0.39
40 4 0.07
41 4 0.07
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (39 bp):
TAAAATAATTATATCTTTAATATAGGGAAGAAATCGATT
Found at i:56478345 original size:27 final size:26
Alignment explanation
Indices: 56478307--56478371 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 26
56478297 TAATTTTAAA
*
56478307 TATAAAAGTATAAAAATAATTGAAAAT
1 TATAAAAATAT-AAAATAATTGAAAAT
*
56478334 TATAAAAATATAAAATAATTGGAAAT
1 TATAAAAATATAAAATAATTGAAAAT
56478360 TATAACAAATAT
1 TATAA-AAATAT
56478372 GTATACTAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 19 0.54
27 16 0.46
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.31
Consensus pattern (26 bp):
TATAAAAATATAAAATAATTGAAAAT
Found at i:56481486 original size:19 final size:19
Alignment explanation
Indices: 56481462--56481499 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
56481452 TCTCCAAAGA
56481462 AAAAAACTTCTATCTTGAG
1 AAAAAACTTCTATCTTGAG
56481481 AAAAAACTTCTATCTTGAG
1 AAAAAACTTCTATCTTGAG
56481500 CAATACAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (19 bp):
AAAAAACTTCTATCTTGAG
Found at i:56497706 original size:7 final size:7
Alignment explanation
Indices: 56497694--56497727 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
56497684 AAAAAAAGTG
56497694 TGAAAAA
1 TGAAAAA
56497701 TGAAAAAA
1 TG-AAAAA
56497709 TG-AAAA
1 TGAAAAA
56497715 TGAAAAA
1 TGAAAAA
56497722 TGAAAA
1 TGAAAA
56497728 GTAATGACGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.24
7 12 0.48
8 7 0.28
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
TGAAAAA
Found at i:56497714 original size:14 final size:13
Alignment explanation
Indices: 56497697--56497727 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
56497687 AAAAGTGTGA
56497697 AAAATGAAAAAATG
1 AAAATG-AAAAATG
56497711 AAAATGAAAAATG
1 AAAATGAAAAATG
56497724 AAAA
1 AAAA
56497728 GTAATGACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:56499043 original size:31 final size:30
Alignment explanation
Indices: 56499008--56499100 Score: 79
Period size: 31 Copynumber: 3.2 Consensus size: 30
56498998 TAAAGATAGT
56499008 AGATCTTGCCTTCCTGCGTTAACAGCGAAGC
1 AGATCTTGCCTTCCTGCGTTAACAG-GAAGC
*****
56499039 AGATC--GAAAAGCTG-GTTAA-A-GATAGC
1 AGATCTTGCCTTCCTGCGTTAACAGGA-AGC
56499065 AGATCTTGCCTTCCTGCGTTAACAGTGAAGC
1 AGATCTTGCCTTCCTGCGTTAACAG-GAAGC
56499096 AGATC
1 AGATC
56499101 AAAGACAAAG
Statistics
Matches: 45, Mismatches: 10, Indels: 14
0.65 0.14 0.20
Matches are distributed among these distances:
25 2 0.04
26 8 0.18
27 1 0.02
28 9 0.20
29 9 0.20
30 1 0.02
31 13 0.29
32 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (30 bp):
AGATCTTGCCTTCCTGCGTTAACAGGAAGC
Found at i:56499060 original size:57 final size:57
Alignment explanation
Indices: 56498991--56499100 Score: 202
Period size: 57 Copynumber: 1.9 Consensus size: 57
56498981 GTTGCAGTGG
*
56498991 AGCTGGTTAAAGATAGTAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAA
1 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAA
*
56499048 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATC
1 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATC
56499101 AAAGACAAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (57 bp):
AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAA
Found at i:56499147 original size:42 final size:42
Alignment explanation
Indices: 56499101--56499321 Score: 180
Period size: 42 Copynumber: 5.1 Consensus size: 42
56499091 GAAGCAGATC
56499101 AAAGACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTT
1 AAAGACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTT
* * * * * * * *
56499143 AAAGATAGCAGATCTTGCCTTCC--TGCGTTAACAGTGAAGCAGATC
1 AAAGACA-AAG-CCTTGCC-TCCATTG-GTT-GCAGTGGAGCTGGTT
56499188 AAAGACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTT
1 AAAGACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTT
* * * * * * * *
56499230 AAAGATAGCAGATCTTGCCTTCC--TGCGTTAACAGTGAAGCAGATC
1 AAAGACA-AAG-CCTTGCC-TCCATTG-GTT-GCAGTGGAGCTGGTT
56499275 AAAGACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTT
1 AAAGACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTT
56499317 AAAGA
1 AAAGA
56499322 TAGCAGATCT
Statistics
Matches: 133, Mismatches: 32, Indels: 28
0.69 0.17 0.15
Matches are distributed among these distances:
42 43 0.32
43 26 0.20
44 26 0.20
45 38 0.29
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (42 bp):
AAAGACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTT
Found at i:56499194 original size:87 final size:87
Alignment explanation
Indices: 56499048--56499486 Score: 745
Period size: 87 Copynumber: 5.0 Consensus size: 87
56499038 CAGATCGAAA
56499048 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGCC
1 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGCC
56499113 TTGCCTCCATTGGTTGCAGTGG
66 TTGCCTCCATTGGTTGCAGTGG
56499135 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGCC
1 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGCC
56499200 TTGCCTCCATTGGTTGCAGTGG
66 TTGCCTCCATTGGTTGCAGTGG
56499222 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGCC
1 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGCC
56499287 TTGCCTCCATTGGTTGCAGTGG
66 TTGCCTCCATTGGTTGCAGTGG
** * * *
56499309 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGTATTAACAGCGAAGCAGATCGAAGACCCAAGC
1 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGA-CAAAGC
* *
56499374 CTTGCCTCCATCGATTGCAGTGG
65 CTTGCCTCCATTGGTTGCAGTGG
* * * *
56499397 AGCTGGTTAAAGATAGCAGATCTTGCCTTCTTGCATTAACAGCGAAGCAGATCGAAA-ACGAAGC
1 AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATC-AAAGACAAAGC
*
56499461 CTTGCCTCCATCGGTTGCAGTGG
65 CTTGCCTCCATTGGTTGCAGTGG
56499484 AGC
1 AGC
56499487 AGATTGAATT
Statistics
Matches: 338, Mismatches: 12, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
87 258 0.76
88 78 0.23
89 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (87 bp):
AGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGCC
TTGCCTCCATTGGTTGCAGTGG
Found at i:56499292 original size:43 final size:43
Alignment explanation
Indices: 56499069--56499292 Score: 190
Period size: 42 Copynumber: 5.2 Consensus size: 43
56499059 GATAGCAGAT
56499069 CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGC
1 CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGC
* * * * * * * *
56499112 CTTGCC-TCCATTG-GTT-GCAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTTCC--TGCGTTAACAGTGAAGCAGATCAAAGACA-AAG-C
56499156 CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGC
1 CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGC
* * * * * * * *
56499199 CTTGCC-TCCATTG-GTT-GCAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTTCC--TGCGTTAACAGTGAAGCAGATCAAAGACA-AAG-C
56499243 CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGC
1 CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGC
56499286 CTTGCCT
1 CTTGCCT
56499293 CCATTGGTTG
Statistics
Matches: 135, Mismatches: 32, Indels: 28
0.69 0.16 0.14
Matches are distributed among these distances:
42 38 0.28
43 33 0.24
44 26 0.19
45 38 0.28
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (43 bp):
CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCAAAGACAAAGC
Found at i:56501251 original size:21 final size:21
Alignment explanation
Indices: 56501226--56501270 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
56501216 TTAGTATGAT
56501226 TTTAAAATATAAAATATATTA
1 TTTAAAATATAAAATATATTA
* * * *
56501247 TTTAAATTGTTAATTATATTA
1 TTTAAAATATAAAATATATTA
56501268 TTT
1 TTT
56501271 GAATGCATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTAAAATATAAAATATATTA
Found at i:56504551 original size:22 final size:23
Alignment explanation
Indices: 56504524--56504568 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
56504514 AGGTATCTAC
56504524 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
56504546 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
56504569 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:56504573 original size:22 final size:22
Alignment explanation
Indices: 56504521--56504578 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
56504511 GAAAGGTATC
*
56504521 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
56504542 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
56504565 TACATATCATATCT
1 TACAAATCATATCT
56504579 GCGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:56509875 original size:17 final size:17
Alignment explanation
Indices: 56509853--56509905 Score: 52
Period size: 19 Copynumber: 3.0 Consensus size: 17
56509843 ATTACAAAGT
56509853 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
* *
56509870 CATATCATATCTACGATTG
1 CATATC-T-TCTAAGATTA
* *
56509889 CATATCCTCGAAGATTA
1 CATATCTTCTAAGATTA
56509906 TGTTTCCATA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
17 13 0.46
18 1 0.04
19 14 0.50
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:56509880 original size:22 final size:23
Alignment explanation
Indices: 56509801--56509881 Score: 123
Period size: 23 Copynumber: 3.7 Consensus size: 23
56509791 GAAAGGTATC
*
56509801 TACAAA-TCAAATC-TCTAAGAT
1 TACAAAGTCATATCTTCTAAGAT
56509822 TACAAAGTCATATCTTCTAAGAT
1 TACAAAGTCATATCTTCTAAGAT
56509845 TACAAAGTCATATCTTCTAAGAT
1 TACAAAGTCATATCTTCTAAGAT
*
56509868 TACATA-TCATATCT
1 TACAAAGTCATATCT
56509882 ACGATTGCAT
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
21 6 0.11
22 14 0.25
23 36 0.64
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.35
Consensus pattern (23 bp):
TACAAAGTCATATCTTCTAAGAT
Found at i:56517895 original size:47 final size:47
Alignment explanation
Indices: 56517824--56517953 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
56517814 TGGATAATTA
* *
56517824 AATTTGGGATGTTAGCATAGTTTAAATATCAAAAC-GACATTCAA-TCC
1 AATTTGGGATGTTAGCATATTTTAAATATCAAAACAGACACT-AACT-C
* *
56517871 AATTTGGGATGTTAGCATATTTTAAATATCAAAACAGCCACTAACTG
1 AATTTGGGATGTTAGCATATTTTAAATATCAAAACAGACACTAACTC
** *
56517918 AATTCAGGATGTTAGCATATTTTAAGTATCAAAACA
1 AATTTGGGATGTTAGCATATTTTAAATATCAAAACA
56517954 ACCATTAATT
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
47 69 0.93
48 5 0.07
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (47 bp):
AATTTGGGATGTTAGCATATTTTAAATATCAAAACAGACACTAACTC
Found at i:56518237 original size:2 final size:2
Alignment explanation
Indices: 56518230--56518254 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
56518220 AGAGGACTGA
56518230 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
56518255 AAAAAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:56519921 original size:16 final size:17
Alignment explanation
Indices: 56519896--56519932 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
56519886 TTATTTATTT
56519896 TTTTCTTTTCTT-TTCC
1 TTTTCTTTTCTTCTTCC
56519912 ATTTTC-TTTCTTCTTCC
1 -TTTTCTTTTCTTCTTCC
56519929 TTTT
1 TTTT
56519933 TAATATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTCTTTTCTTCTTCC
Found at i:56519933 original size:17 final size:17
Alignment explanation
Indices: 56519895--56519933 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
56519885 TTTATTTATT
56519895 TTTTTCTTTTCTTTTCC
1 TTTTTCTTTTCTTTTCC
*
56519912 ATTTTC-TTTCTTCTTCC
1 TTTTTCTTTTCTT-TTCC
56519929 TTTTT
1 TTTTT
56519934 AATATTTGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTCC
Found at i:56527597 original size:14 final size:13
Alignment explanation
Indices: 56527549--56527600 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 13
56527539 TATAGTTATG
56527549 ATAATAATAAATA
1 ATAATAATAAATA
56527562 TATAAATAATAAAGGTA
1 -AT-AATAATAAA--TA
56527579 A-AATAATAACATA
1 ATAATAATAA-ATA
56527592 ATAATAATA
1 ATAATAATA
56527601 TTAAATTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
13 3 0.09
14 17 0.52
15 10 0.30
16 1 0.03
17 2 0.06
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (13 bp):
ATAATAATAAATA
Found at i:56527820 original size:199 final size:200
Alignment explanation
Indices: 56527595--56527995 Score: 795
Period size: 199 Copynumber: 2.0 Consensus size: 200
56527585 TAACATAATA
56527595 ATAATATTAAATTAATTAATTTAATAATAAAATAGCCAAAATAACAAAAAAGGACTAAATTAAGC
1 ATAATATTAAATTAATTAATTTAATAATAAAATAGCCAAAATAACAAAAAAGGACTAAATTAAGC
56527660 TTAAAAAAATTTGGGGCAAATCAGAAGTAAATGACAAAAGGATGACCCTTCTAAACGCGCGAATA
66 TTAAAAAAATTTGGGGCAAATCAGAAGTAAATGACAAAAGGATGACCCTTCTAAACGCGCGAATA
56527725 ACAATGAAGGACTAAAAGGGTAATTTTCCCTTCCTTCAAAACGCGTCGTTTCATTCGGGATTAAA
131 ACAATGAAGGACTAAAAGGGTAATTTTCCCTTCCTTCAAAACGCGTCGTTTCATTCGGGATTAAA
56527790 ATGCG
196 ATGCG
56527795 ATAATATT-AATTAATTAATTTAATAATAAAATAGCCAAAATAACAAAAAAGGACTAAATTAAGC
1 ATAATATTAAATTAATTAATTTAATAATAAAATAGCCAAAATAACAAAAAAGGACTAAATTAAGC
56527859 TTAAAAAAATTTGGGGCAAATCAGAAGTAAATGACAAAAGGATGACCCTTCTAAACGCGCGAATA
66 TTAAAAAAATTTGGGGCAAATCAGAAGTAAATGACAAAAGGATGACCCTTCTAAACGCGCGAATA
56527924 ACAATGAAGGACTAAAAGGGTAATTTTCCCTTCCTTCAAAACGCGTCGTTTCATTCGGGATTAAA
131 ACAATGAAGGACTAAAAGGGTAATTTTCCCTTCCTTCAAAACGCGTCGTTTCATTCGGGATTAAA
56527989 ATGCG
196 ATGCG
56527994 AT
1 AT
56527996 GAAACAAAAT
Statistics
Matches: 201, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
199 193 0.96
200 8 0.04
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.26
Consensus pattern (200 bp):
ATAATATTAAATTAATTAATTTAATAATAAAATAGCCAAAATAACAAAAAAGGACTAAATTAAGC
TTAAAAAAATTTGGGGCAAATCAGAAGTAAATGACAAAAGGATGACCCTTCTAAACGCGCGAATA
ACAATGAAGGACTAAAAGGGTAATTTTCCCTTCCTTCAAAACGCGTCGTTTCATTCGGGATTAAA
ATGCG
Found at i:56529317 original size:89 final size:88
Alignment explanation
Indices: 56529224--56529393 Score: 205
Period size: 88 Copynumber: 1.9 Consensus size: 88
56529214 GAGATTTGTA
* * * * *
56529224 GCTTCTATCTACTCCGCTGGAACTTCAAGGAGATAAGAATTGATAATTTCAATCTACTCCACTAC
1 GCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAG-ACTGATAACTTCAATCTACTCCACTAC
*
56529289 AACTTCAGGGAGATAAGGCTGGTG
65 AACTTCAGGAAGATAAGGCTGGTG
* * * * ** * *
56529313 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCA
1 GCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGACTGATAACTTCAATCTACTCCACTACA
56529378 ACTTCAGGAAGATAAG
66 ACTTCAGGAAGATAAG
56529394 ATCTGCCATA
Statistics
Matches: 67, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
88 35 0.52
89 32 0.48
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (88 bp):
GCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGACTGATAACTTCAATCTACTCCACTACA
ACTTCAGGAAGATAAGGCTGGTG
Found at i:56529336 original size:44 final size:44
Alignment explanation
Indices: 56529271--56529393 Score: 219
Period size: 44 Copynumber: 2.8 Consensus size: 44
56529261 AATTGATAAT
* *
56529271 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGGCTGGTGGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGC
56529315 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGC
*
56529359 TTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
56529394 ATCTGCCATA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 76 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGC
Found at i:56529613 original size:142 final size:143
Alignment explanation
Indices: 56529314--56529714 Score: 554
Period size: 143 Copynumber: 2.8 Consensus size: 143
56529304 AGGCTGGTGG
* * * * *
56529314 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
1 CTTCAATCTACTCCGCTACAACTTTAGAGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
* ** **
56529379 CTTCAGGAAGATAAGATCTGCCATAATTTGTAG-TTGTAATCTGTTCCATTGTAATGCCAGAGAA
66 CTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTT-TAATCTGTTCCACTACAACACCAGAGAA
*
56529443 ATAAGATTTGCTGT
130 ATAAGATTCGCTGT
* * *
56529457 CTTCAATCTGCTCCGCTACAACTTTCGAGAGATAAGGCTGGTGGCTTTAATCTGCTCCACTGCAA
1 CTTCAATCTACTCCGCTACAACTTTAGAGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
* * *
56529522 CTTCAGGAA-ATAAGATCCGCCATAATTTGTAGCTTTAATCTATTCCACTACAACACCAGGGAAA
66 CTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACACCAGAGAAA
*
56529586 TAAGATTCGTTGT
131 TAAGATTCGCTGT
* * * * *
56529599 CTTCAGTCTACTCCGCTGCAACTTTAGGGAGATAAGGTTTGGTGGCTTCAATCTGCTCCCCTGCA
1 CTTCAATCTACTCCGCTACAACTTTAGAGAGATAAGG-CTGGTGGCTTCAATCTGCTCCACTGCA
*
56529664 ACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCACT
65 ACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCACT
56529715 GAAATGCCAA
Statistics
Matches: 228, Mismatches: 27, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
142 87 0.38
143 103 0.45
144 38 0.17
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (143 bp):
CTTCAATCTACTCCGCTACAACTTTAGAGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
CTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACACCAGAGAAA
TAAGATTCGCTGT
Found at i:56530776 original size:20 final size:20
Alignment explanation
Indices: 56530751--56530791 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
56530741 GACTAGGTGC
56530751 CCCAGATATCGCAGCTTGAA
1 CCCAGATATCGCAGCTTGAA
56530771 CCCAGATATCGCAGCTTGAA
1 CCCAGATATCGCAGCTTGAA
56530791 C
1 C
56530792 TTTTCTGTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.20
Consensus pattern (20 bp):
CCCAGATATCGCAGCTTGAA
Found at i:56536845 original size:19 final size:20
Alignment explanation
Indices: 56536821--56536867 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
56536811 TGGTGGACTT
* *
56536821 TAATGCATATG-ATGTAATG
1 TAATGCAAATGCATGAAATG
56536840 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
56536860 -AATGCAAA
1 TAATGCAAA
56536868 AAGAGATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:56538973 original size:14 final size:13
Alignment explanation
Indices: 56538925--56539001 Score: 52
Period size: 14 Copynumber: 5.7 Consensus size: 13
56538915 TATAGTTATG
56538925 ATAATAATAAATA
1 ATAATAATAAATA
56538938 TATAAATAATAAAGGTA
1 -AT-AATAATAAA--TA
56538955 A-AATAATAACATA
1 ATAATAATAA-ATA
*
56538968 ATAATATTAAATTA
1 ATAATAATAAA-TA
* *
56538982 ATTA-AATTAATA
1 ATAATAATAAATA
56538994 ATAA-AATA
1 ATAATAATA
56539002 GCCAAAATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
12 8 0.16
13 8 0.16
14 22 0.43
15 10 0.20
16 1 0.02
17 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (13 bp):
ATAATAATAAATA
Found at i:56540106 original size:12 final size:12
Alignment explanation
Indices: 56540089--56540115 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
56540079 ACTTTTATTT
56540089 TTTTTTGGTTTA
1 TTTTTTGGTTTA
56540101 TTTTTTGGTTTA
1 TTTTTTGGTTTA
56540113 TTT
1 TTT
56540116 AATTGGCCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.15, T:0.78
Consensus pattern (12 bp):
TTTTTTGGTTTA
Found at i:56542146 original size:896 final size:895
Alignment explanation
Indices: 56540174--56543256 Score: 4805
Period size: 896 Copynumber: 3.5 Consensus size: 895
56540164 TTCCCATGTG
* * * *
56540174 AATAACTATAAGAATGTAACATCTTATCAAATATTAATCAAATAAGATGAAGAGAGAGATTC-GA
1 AATAACTACAAGAATGTCACATCTTATCAAATATTAATCAAATAAAATGAAGAAAGAGATTCAG-
* * * * *
56540238 TCTCGTTTTACACAATAAACATAGCACAACTTGACTCTTGATACCAATTGTTGGAAAAATATCCG
65 TCTCATTTTACACCATAAACATAGCACAACGTAACTCTTGATACCAATTGTTGGAAAAATATCCA
*
56540303 GTTTGAAAAT-GATATTCTTGCACAGCAGAAGACCACATGCTTTTCTTTTTTGTTTTCTTTTGAT
130 GTTTGAAAATAG-TATTCTTGCACAGCAGATGACCACATGCTTTTCTTTTTTGTTTTCTTTTGAT
* * *
56540367 TTATTAATT-AGTTTAGTATTTTAACTTTTAAAAACAACTAAAATTTCATAATTAAAACCCATTA
194 TTATTAATTGA-TTTACTATTTTAACCTTTAAAAACAACTAAAATTTCATAATTAAAACCCACTA
* ** *
56540431 ACTGTCCACCATAATCTAAATAGGTCTAATTACTATATAAATATCTTAACTCATGATTTTATATC
258 ACGGTCCACCATAATCTAAATAGGTCTAATTACTATATAAATCCCTTAATTCATGATTTTATATC
* * * *
56540496 TATTTAATACAAATAAACCCATAGTGCTTAACTTTTGTAGCTTTTACGATTTCGTTCTTTTTACT
323 TATTTAATACAAATAAACCTATAGTGCTTAACTTTTGCAGCTTTTACGATTTAGTCCTTTTTACT
* * * * *
56540561 TAATTAAGCAACCAAAAAAGCAAAATTTTTAAACCAAACTTTATTACGACACTTTAGTAGACTTA
388 TAATTAAGCAACC-AAACATCAAAATTTTTAAACCAAACTTTATTACGACACTATAATAGACTCA
* * * * *
56540626 TAAATATTAAATAAAT-GATATAATACTAACTCATTGATCGAAATCGTGGTCCCGAAACCACTAT
452 TAAATATTAAATAAATAG-CATAATACTGACTCATTGATTGAAATCATGGTCCTGAAACCACTAT
* ** ** * * *
56540690 TTTTTATACCACTGGAAACGAGTTGTTGTAGATAGGTAACAAAATAAAATTGTCAGCTAATGTCT
516 TTTTGATACCACTAAAAACGAGTTGTTACAAATGGGTAACAAAATAAAATTGTCAGCCAATGTCT
** * * * * *
56540755 CTATTGTTCTATTTTTATAAAATAAATGAAAAA-CAAAAATTATACAGTTTTTCATCATAAGGCA
581 CTATCATTCTATTTTTAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCATCATAAGACA
* * * * * * * *
56540819 ------TTCCTTGTATCTTCTACCATCATCGCTCCATCTTCTCCTCATCTTGGAATCCTGTTTGG
646 TTCCTTTTCCTTGTGTCTTCGACCGTCATCGCTCTATCTTCTCCTCATCATGGACTTCTTTTTGG
* * * ** * * *
56540878 AAAAATTACATTTATGTCCTACGTC-TGTAGAGCTCACAGGAATTCAAAAAATAAAAAATAATCC
711 AAAAATTACATTTATATCTTACGTCGTTTCTAGCTCACAAGAATTCCAAAAATAAAAAATAATTC
* * * * * * *
56540942 TATACGGAGATGATAATAAACAGTCTATTTCCTAAGAATCACAACCTTGGCAAAAAAAATAATTA
776 TATATGGAGATGATAGTATACAATTTATTTCCTAAGAACCACAACCTTGGC-AAAAAATTAATTA
*
56541007 TTATATAACAAATATATAATATTGCATTTATTCACATACATTCCCTTAAACATGCA
840 TTATATAACAAATATATAATATTGCATTCATTCACATACATTCCCTTAAACATGCA
* **
56541063 AATAACTACAAGGATGTCACATCTTATCAAATATTAATCAAATAAAATGAAGAGCGAGATTCAGT
1 AATAACTACAAGAATGTCACATCTTATCAAATATTAATCAAATAAAATGAAGAAAGAGATTCAGT
*
56541128 CTCATTTTACACCATAAACATAGCACAACGTAACTCTTGATATCAATTGTTGGAAAAATATCCAG
66 CTCATTTTACACCATAAACATAGCACAACGTAACTCTTGATACCAATTGTTGGAAAAATATCCAG
* *
56541193 TTTGAAAACAGTATTCTTGCATAGCAGATGACCACATGCTTTTCTTTTTTGTTTTCTTTTGATTT
131 TTTGAAAATAGTATTCTTGCACAGCAGATGACCACATGCTTTTCTTTTTTGTTTTCTTTTGATTT
*
56541258 ACTAATTGATTTACTATTTTAACCTTTAAAAACAACTAAAATTTCATAATTAAAACCCACTAACG
196 ATTAATTGATTTACTATTTTAACCTTTAAAAACAACTAAAATTTCATAATTAAAACCCACTAACG
56541323 GTCCACCATAATCTAAATAGGTCTAATTACTATATAAATCCCTTAATTCATGATTTTATATCTAT
261 GTCCACCATAATCTAAATAGGTCTAATTACTATATAAATCCCTTAATTCATGATTTTATATCTAT
*
56541388 TTAATACAAATAAACCTATAGTGCTTAACTTTTGCAGCTTTTATGATTTAGTCCTTTTTACTTAA
326 TTAATACAAATAAACCTATAGTGCTTAACTTTTGCAGCTTTTACGATTTAGTCCTTTTTACTTAA
* *
56541453 TTAAGCAACCAAACATCAAAATTTTTAAACCAAAATTTTTTACGACACTATAATAGACTCATAAA
391 TTAAGCAACCAAACATCAAAATTTTTAAACCAAACTTTATTACGACACTATAATAGACTCATAAA
56541518 TATTAAATAAATAGCATAATACTGACTCATTGATTGAAATCATGGTCCTGAAACCACTATTTTTG
456 TATTAAATAAATAGCATAATACTGACTCATTGATTGAAATCATGGTCCTGAAACCACTATTTTTG
56541583 ATACCACTAAAAACGAGTTGTTACAAATGGGTAACAAAATAAAATTGTCAGCCAATGTCTCTATC
521 ATACCACTAAAAACGAGTTGTTACAAATGGGTAACAAAATAAAATTGTCAGCCAATGTCTCTATC
56541648 ATTCTATTTTTAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCATCATAAGACATTCCT
586 ATTCTATTTTTAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCATCATAAGACATTCCT
56541713 TTTCCTTGTGTCTTCGACCGTCATCGCTCTATCTTCTCCTCATCATGGACTTCTTTTTGGAAAAA
651 TTTCCTTGTGTCTTCGACCGTCATCGCTCTATCTTCTCCTCATCATGGACTTCTTTTTGGAAAAA
56541778 TTACATTTATATCTTACGTCCGTTTCTAGCTCACAAGAATTCCAAAAATAAAAAATAATTCTATA
716 TTACATTTATATCTTACGT-CGTTTCTAGCTCACAAGAATTCCAAAAATAAAAAATAATTCTATA
56541843 TGGAGATGATAGTATACAATTTATTTCCTAAGAACCACAACCTTGGCAAAAAATTAATTATTATA
780 TGGAGATGATAGTATACAATTTATTTCCTAAGAACCACAACCTTGGCAAAAAATTAATTATTATA
56541908 TAACAAATATATAATATTGCATTCATTCACATACATTCCCTTAAACATGCA
845 TAACAAATATATAATATTGCATTCATTCACATACATTCCCTTAAACATGCA
* *
56541959 AATAACTACAATG-ATGTCACATCTTATCAATTATTAATCAAATAAAATGAAGAAAGAGATTTAG
1 AATAACTACAA-GAATGTCACATCTTATCAAATATTAATCAAATAAAATGAAGAAAGAGATTCAG
56542023 TCTCATTTTACACCATAAACATAGCACAACGTAACTCTTGATACCAATTGTTGGAAAAATATCCA
65 TCTCATTTTACACCATAAACATAGCACAACGTAACTCTTGATACCAATTGTTGGAAAAATATCCA
*
56542088 GTTTGAAAATAGTATTCTTGCATAGCAGATGACCACATGCTTTTCTTTTTTGTTTTCTTTTGATT
130 GTTTGAAAATAGTATTCTTGCACAGCAGATGACCACATGCTTTTCTTTTTTGTTTTCTTTTGATT
56542153 TATTAATTGATTTACTATTTTAACCTTTAAAAACAACTAAAATTTCATAATTAAAACCCACTAAC
195 TATTAATTGATTTACTATTTTAACCTTTAAAAACAACTAAAATTTCATAATTAAAACCCACTAAC
56542218 GGTCCACCATAATCTAAATAGGTCTAATTACTATATAAATCCCTTAATTCATGATTTTATATCTA
260 GGTCCACCATAATCTAAATAGGTCTAATTACTATATAAATCCCTTAATTCATGATTTTATATCTA
* *
56542283 TTTAATACAAATAAACCTATAATGCTTAACTTTTGCAGCTTTTATGATTTAGTCCTTTTTACTTA
325 TTTAATACAAATAAACCTATAGTGCTTAACTTTTGCAGCTTTTACGATTTAGTCCTTTTTACTTA
*
56542348 ATTAAGCAACCAAACATCAAAATTTTTAAACCAAACTTTATTACAACACTATAATAGACTCATAA
390 ATTAAGCAACCAAACATCAAAATTTTTAAACCAAACTTTATTACGACACTATAATAGACTCATAA
* *
56542413 ATATTAAATAAATAGCATAATACTGACTCATTGATTGAAATCATGGTCCTGAAACCATTGTTTTT
455 ATATTAAATAAATAGCATAATACTGACTCATTGATTGAAATCATGGTCCTGAAACCACTATTTTT
*
56542478 GATACCACTAAAAACGAGTTGTTACAAATGGGTAAAAAAATAAAATTGTCAGCCAATGTCTCTAT
520 GATACCACTAAAAACGAGTTGTTACAAATGGGTAACAAAATAAAATTGTCAGCCAATGTCTCTAT
56542543 CATTCTATTTTTAG-AAATAAATGAAAAATAAAAAATTACATAGTTTTTCATCATAAGACATTCC
585 CATTCTATTTTTAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCATCATAAGACATTCC
*
56542607 TTTTCCTTGTGTCTTCGACCGTCATCGCTCTATCTTCTCTTCATCATGGACTTCTTTTTGGAAAA
650 TTTTCCTTGTGTCTTCGACCGTCATCGCTCTATCTTCTCCTCATCATGGACTTCTTTTTGGAAAA
*
56542672 ATTACATTTATATCTTATGTTCGTTTCTAGCTCACAAGAATTCCAAAAATAAAAAATAATTCTAT
715 ATTACATTTATATCTTACG-TCGTTTCTAGCTCACAAGAATTCCAAAAATAAAAAATAATTCTAT
*
56542737 GTGGAGATGATAGTATACAATTTATTTCCTAAGAACCACAACCTTGGCAAAAAATTAATTATTAT
779 ATGGAGATGATAGTATACAATTTATTTCCTAAGAACCACAACCTTGGCAAAAAATTAATTATTAT
56542802 ATAACAAATATATAATATTGCATTCATTCACATACATTCCCTTAAACATGCA
844 ATAACAAATATATAATATTGCATTCATTCACATACATTCCCTTAAACATGCA
* * * *
56542854 AATAACTACAAGAATGTCACATCTTATTAAATATTAATCAAACAAGATGAAGGGAA-AGATTCAG
1 AATAACTACAAGAATGTCACATCTTATCAAATATTAATCAAATAAAATGAA-GAAAGAGATTCAG
* * * * * * **
56542918 TCTCATTTTACATCATAAACATAGCATAGCCTGACTCTTGATACCAATTGTTGGAAAGATAT-TT
65 TCTCATTTTACACCATAAACATAGCACAACGTAACTCTTGATACCAATTGTTGGAAAAATATCCA
* *
56542982 GATTTGAAAATGGTATTCTTGCACAGTAGATGACCACATG--TTT-TTTTTTG-----TTTTGAT
130 G-TTTGAAAATAGTATTCTTGCACAGCAGATGACCACATGCTTTTCTTTTTTGTTTTCTTTTGAT
* * * * **
56543039 TCATTAATTAATTTACTATTTTAACCTTTAAGAACAATTAAAATTTCATAATTAAAAGACAC-AA
194 TTATTAATTGATTTACTATTTTAACCTTTAAAAACAACTAAAATTTCATAATTAAAACCCACTAA
*
56543103 -GTGTCCACCATAATCTAAATAGTTCTAATTACTATATAAATCCCTTAATTCATGATTTTATATC
259 CG-GTCCACCATAATCTAAATAGGTCTAATTACTATATAAATCCCTTAATTCATGATTTTATATC
* * *
56543167 TATTTAATACAAATAAACCAATAGTGCTTAAGTTTTGCAGCTTTTACGATTTAGTTCTTTTTACT
323 TATTTAATACAAATAAACCTATAGTGCTTAACTTTTGCAGCTTTTACGATTTAGTCCTTTTTACT
* **
56543232 TAATTAAGCAAACGGACATCAAAAT
388 TAATTAAGCAACCAAACATCAAAAT
56543257 ATTAATTACT
Statistics
Matches: 2048, Mismatches: 127, Indels: 41
0.92 0.06 0.02
Matches are distributed among these distances:
885 1 0.00
886 145 0.07
887 63 0.03
888 188 0.09
889 395 0.19
890 3 0.00
892 7 0.00
893 3 0.00
894 2 0.00
895 508 0.25
896 654 0.32
897 79 0.04
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (895 bp):
AATAACTACAAGAATGTCACATCTTATCAAATATTAATCAAATAAAATGAAGAAAGAGATTCAGT
CTCATTTTACACCATAAACATAGCACAACGTAACTCTTGATACCAATTGTTGGAAAAATATCCAG
TTTGAAAATAGTATTCTTGCACAGCAGATGACCACATGCTTTTCTTTTTTGTTTTCTTTTGATTT
ATTAATTGATTTACTATTTTAACCTTTAAAAACAACTAAAATTTCATAATTAAAACCCACTAACG
GTCCACCATAATCTAAATAGGTCTAATTACTATATAAATCCCTTAATTCATGATTTTATATCTAT
TTAATACAAATAAACCTATAGTGCTTAACTTTTGCAGCTTTTACGATTTAGTCCTTTTTACTTAA
TTAAGCAACCAAACATCAAAATTTTTAAACCAAACTTTATTACGACACTATAATAGACTCATAAA
TATTAAATAAATAGCATAATACTGACTCATTGATTGAAATCATGGTCCTGAAACCACTATTTTTG
ATACCACTAAAAACGAGTTGTTACAAATGGGTAACAAAATAAAATTGTCAGCCAATGTCTCTATC
ATTCTATTTTTAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCATCATAAGACATTCCT
TTTCCTTGTGTCTTCGACCGTCATCGCTCTATCTTCTCCTCATCATGGACTTCTTTTTGGAAAAA
TTACATTTATATCTTACGTCGTTTCTAGCTCACAAGAATTCCAAAAATAAAAAATAATTCTATAT
GGAGATGATAGTATACAATTTATTTCCTAAGAACCACAACCTTGGCAAAAAATTAATTATTATAT
AACAAATATATAATATTGCATTCATTCACATACATTCCCTTAAACATGCA
Found at i:56543840 original size:19 final size:19
Alignment explanation
Indices: 56543818--56543867 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 19
56543808 ATTATTAATG
**
56543818 TTTTAGTATTTTTTCATTT
1 TTTTAGTATTTTTTCAACT
56543837 TTTTAG--TTTTTTCAACT
1 TTTTAGTATTTTTTCAACT
*
56543854 TTTTAATATTTTTT
1 TTTTAGTATTTTTT
56543868 AAAGAAGTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 14 0.54
19 12 0.46
ACGTcount: A:0.18, C:0.06, G:0.04, T:0.72
Consensus pattern (19 bp):
TTTTAGTATTTTTTCAACT
Found at i:56546183 original size:16 final size:16
Alignment explanation
Indices: 56546162--56546226 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
56546152 TTCGCTGTAT
*
56546162 TGGAATAGATGCGTAA
1 TGGAATAGAGGCGTAA
56546178 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
56546194 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
*
56546210 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
56546226 T
1 T
56546227 AGCAAATCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.37, C:0.03, G:0.35, T:0.25
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:56546594 original size:120 final size:119
Alignment explanation
Indices: 56546437--56547026 Score: 573
Period size: 120 Copynumber: 5.0 Consensus size: 119
56546427 ATTTAATCAT
* *
56546437 ATTTAAACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAAA-ATAATTATTATTAAATATAAT-TAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
56546502 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
64 ATTAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAGATA
* * *
56546558 ATTTAACATAATTATTATTAAACATATATTAATTAAAATATATAATTTAATAAAATTCTTGATAA
1 ATTTAAAATAATTATTATTAAATATA-ATTAATTAAAATATATAATTTAATAAAATTCTTAATAA
* * * ** *
56546623 TTAATGTTCTTATATGAATTTACTCAAATCATAATATATGATACTATATTATATA
65 TTAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAGATA
* * * * * *
56546678 ATTT--AAT-A-TAAT-TTGAA-ATAATTAATATTAAATATAT--TTTAATTAAAATATATGATT
1 ATTTAAAATAATTATTATTAAATATAATTAAT-TAAAATATATAATTTAA-TAAAAT-TCTTA-A
* * * * ** **
56546735 TAA-TAAAATT-TAAAAT-AA-TTA-TAACTAAT-A-AAT-TTTCTTA-TATGAATTTGTATA
62 TAATTAATATTCTTATATGAATTTACTAA--AATCATAATATATAATACTAT-AA-AAG-ATA
*
56546789 ATTTAAAATAATTATTATTAAATATAATTTAA-TAATAATATATAATTTAATAAAATTCTTAGT-
1 ATTTAAAATAATTATTATTAAATATAA-TTAATTAA-AATATATAATTTAATAAAATTCTTAATA
* *
56546852 ATGAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
64 AT-TAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAGATA
56546909 ATTTAAAATAATTATTATTAAATATAATTTAA-TAATAATATATAATTTAATAAAATTC--AAT-
1 ATTTAAAATAATTATTATTAAATATAA-TTAATTAA-AATATATAATTTAATAAAATTCTTAATA
56546970 A-TAATTATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAA-ATA
64 ATTAA-TATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAGATA
56547025 AT
1 AT
56547027 ATATAATCTA
Statistics
Matches: 392, Mismatches: 46, Indels: 67
0.78 0.09 0.13
Matches are distributed among these distances:
108 3 0.01
109 5 0.01
110 6 0.02
111 11 0.03
112 10 0.03
113 19 0.05
114 20 0.05
115 11 0.03
116 17 0.04
117 67 0.17
118 19 0.05
119 10 0.03
120 172 0.44
121 13 0.03
122 6 0.02
123 3 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (119 bp):
ATTTAAAATAATTATTATTAAATATAATTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
TAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAGATA
Found at i:56546607 original size:14 final size:15
Alignment explanation
Indices: 56546556--56546604 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
56546546 CTATAAAAGA
*
56546556 TAATTTAACATA-AT
1 TAATTAAACATATAT
56546570 TATTATTAAACATATAT
1 TA--ATTAAACATATAT
56546587 TAATTAAA-ATATA-
1 TAATTAAACATATAT
56546600 TAATT
1 TAATT
56546605 TAATAAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.16
14 7 0.23
15 6 0.19
16 9 0.29
17 4 0.13
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (15 bp):
TAATTAAACATATAT
Found at i:56546736 original size:54 final size:53
Alignment explanation
Indices: 56546672--56546845 Score: 166
Period size: 54 Copynumber: 3.4 Consensus size: 53
56546662 GATACTATAT
* *
56546672 TATATAATTTAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAAAA
1 TATATAATTTAATAAAATTTAAAATAATTAATATTAAATATATTTTAA-TAAAA
* * * *
56546726 TATATGATTTAATAAAATTTAAAATAATT-ATAACT-AATAAATTTT-CT----
1 TATATAATTTAATAAAATTTAAAATAATTAAT-ATTAAATATATTTTAATAAAA
* * * *
56546773 TATATGAATTT-GTATAATTTAAAATAATTATTATTAAATATAATTTAATAATAA
1 TATAT-AATTTAATAAAATTTAAAATAATTAATATTAAATATATTTTAATAA-AA
56546827 TATATAATTTAATAAAATT
1 TATATAATTTAATAAAATT
56546846 CTTAGTATGA
Statistics
Matches: 93, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
47 23 0.25
48 13 0.14
49 1 0.01
51 1 0.01
53 16 0.17
54 39 0.42
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (53 bp):
TATATAATTTAATAAAATTTAAAATAATTAATATTAAATATATTTTAATAAAA
Found at i:56546757 original size:28 final size:27
Alignment explanation
Indices: 56546670--56546845 Score: 101
Period size: 28 Copynumber: 6.7 Consensus size: 27
56546660 ATGATACTAT
*
56546670 ATTATATAATTTAATATAATTTGAAATA
1 ATTATAT-ATTTAATATAATTTAAAATA
* *
56546698 ATTA-ATATTAAATATATTTTAATTAA-A
1 ATTATATATTTAATATAATTTAA--AATA
*
56546725 A-TATATGATTTAATAAAATTTAAAATA
1 ATTATAT-ATTTAATATAATTTAAAATA
*
56546752 ATTATA-A-CTAATA-AATTT----T-
1 ATTATATATTTAATATAATTTAAAATA
* *
56546771 CTTATATGAATTT-GTATAATTTAAAATA
1 ATTATAT--ATTTAATATAATTTAAAATA
*
56546799 ATTAT-TATTAAATATAATTTAATAATA
1 ATTATATATTTAATATAATTTAA-AATA
*
56546826 A-TATATAATTTAATAAAATT
1 ATTATAT-ATTTAATATAATT
56546846 CTTAGTATGA
Statistics
Matches: 113, Mismatches: 15, Indels: 40
0.67 0.09 0.24
Matches are distributed among these distances:
19 5 0.04
20 1 0.01
22 3 0.03
23 6 0.05
24 5 0.04
25 8 0.07
26 31 0.27
27 16 0.14
28 38 0.34
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (27 bp):
ATTATATATTTAATATAATTTAAAATA
Found at i:56546859 original size:61 final size:61
Alignment explanation
Indices: 56546786--56546967 Score: 201
Period size: 61 Copynumber: 3.0 Consensus size: 61
56546776 ATGAATTTGT
*
56546786 ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTC
1 ATAATATAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTC
* * * * * * * ** * *
56546847 TTAGTATGAAAT-ATTCTTATATGAATTTACTAAAATCATAATATATAATACT-ATAAAA-T-
1 ATAATATAAAATAATTATTAT-TAAATATAATTTAATAATAATATATAAT-TTAATAAAATTC
*
56546906 ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTC
1 ATAATATAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTC
56546967 A
1 A
56546968 ATATAATTAT
Statistics
Matches: 91, Mismatches: 24, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
58 1 0.01
59 36 0.40
60 16 0.18
61 37 0.41
62 1 0.01
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (61 bp):
ATAATATAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTC
Found at i:56558108 original size:9 final size:9
Alignment explanation
Indices: 56558094--56558170 Score: 84
Period size: 9 Copynumber: 8.4 Consensus size: 9
56558084 TTTGGTTAAA
56558094 AATTACCCG
1 AATTACCCG
56558103 AATTACCCG
1 AATTACCCG
*
56558112 AATTAACCG
1 AATTACCCG
*
56558121 AATTAACCG
1 AATTACCCG
*
56558130 AATTAACCG
1 AATTACCCG
*
56558139 AAATA-CCG
1 AATTACCCG
*
56558147 AAACATACCCG
1 -AA-TTACCCG
56558158 AATTACCCG
1 AATTACCCG
56558167 AATT
1 AATT
56558171 TTTTTTATTT
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
8 3 0.05
9 51 0.82
10 5 0.08
11 3 0.05
ACGTcount: A:0.42, C:0.27, G:0.10, T:0.21
Consensus pattern (9 bp):
AATTACCCG
Found at i:56558130 original size:27 final size:27
Alignment explanation
Indices: 56558093--56558170 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
56558083 TTTTGGTTAA
56558093 AAATTACCCGAATTACCCGAATTAACCG
1 AAATTACCCGAATTACCCGAATT-ACCG
* * *
56558121 -AATTAACCGAATTAACCGAAATACCG
1 AAATTACCCGAATTACCCGAATTACCG
*
56558147 AAACATACCCGAATTACCCGAATT
1 AAA-TTACCCGAATTACCCGAATT
56558171 TTTTTTATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 4 0.10
27 21 0.51
28 16 0.39
ACGTcount: A:0.42, C:0.27, G:0.10, T:0.21
Consensus pattern (27 bp):
AAATTACCCGAATTACCCGAATTACCG
Found at i:56558329 original size:13 final size:13
Alignment explanation
Indices: 56558311--56558340 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
56558301 TTTTAGTTTT
56558311 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
56558324 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
56558337 ATTG
1 ATTG
56558341 AGTTTGGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:56565076 original size:736 final size:735
Alignment explanation
Indices: 56562909--56566279 Score: 4942
Period size: 736 Copynumber: 4.6 Consensus size: 735
56562899 GGAGCTTTGT
* * * *
56562909 AGTATACCACAAAGAGCTTTGCTGAGTGATACAAAAAATCCAAGGAGTTTGGGTAAGAAGCATTG
1 AGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTG
* * ** * * *
56562974 CGAATTAGTTGCATTACAAAGTGGTAAGATTTTGAAACCTAAGGAGGTTGTGATTAAAGATGAGC
66 CAAATTGGTTGCATTATGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTAGC
* *
56563039 CTACTGAGAAGGAGGAAAGTCCACCAAAAGTTGAAGTTCTTAAACTGAAAAAGAA-AAGATGCTG
131 CTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACT-AAAAA-AATAAGATGCTG
* * * * * *
56563103 AAAAATATGCTGAGGTAAACCTTAAACTAGTAAATTTTAAAAAGGTAACACCTTTTTCATATTTA
194 AAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTA
*
56563168 CTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCAAATCCTCAAAATCTTCAACAGAATAA
259 CTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAA
* * * *
56563233 GCAAAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTTTAAAGAAATTTCACATCAACATCC
324 GCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCC
* * **
56563298 CATTGGTGGAGGCTTCAGAATAAATGCCCAACTATGTGAAG--TACTGAAGGATATTTTGTCCAA
389 CATTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTTA-TGAAGGATATTTTGTCCAA
* * * * * *
56563361 GAAGAAATGTCTTAGTGAGTATGAGACTATTGCTTTGACAAAGGAGTGCAGCGTGTTATTACAAA
453 GAAGAAATGGCTTAATGAGTATGAGACTATTGCTTTGA-AAAAGAGTGCAGTGTGTTCTTACAGA
* * *
56563426 ACAAGCTACCTCCAAAACTAAAGGACCTTGGAAGCTTTACGATACCATGTAACATCAGAAAATAT
517 ACAAGGTACCTCCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAAAATAT
56563491 TACTACAGTGAAGCTTTGTATGACATTGGAGCAAGCATCAACTTGATGCCCAAATCTATTTTCAA
582 TACTACAGTGAAGCTTTGTATGACATTGGAGCAAGCATCAACTTGATGCCCAAATCTATTTTCAA
* * * *
56563556 ACAATTGGCAATAGGTAAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCATTAG
647 ACTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAG
*
56563621 CATATCCTGAGGGAAAAGCATC-A
712 CATATCCTGAGGGAAAAGCTTCGA
56563644 TAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATT
1 -AGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATT
* * * * * * *
56563709 GCAAATTGGTTGTATTACGTAGTGGTAAGATTTTGAAACCCAAGGAGGTCGTGATTAAAAATGAG
65 GCAAATTGGTTGCATTATGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTAG
** * * * * *
56563774 TGTACTGACAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTATGCTAAAAACATAAGATGCTAA
130 CCTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGA
* *
56563839 AAAATATGATGAGGTAAACCCTAAACTAGTATATTCTAAGAAGCTAGCACCTTTTTCAGATTTAC
195 AAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTAC
* *
56563904 TTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAATAGAATATG
260 TTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAG
* * * *
56563969 CAGAAA-AAGTGGTACAATTTAAGAAGTTCTTGGATGTTCTAAAGTAACTTCAGATCAACATCCT
325 CAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCC
* * *
56564033 TTTGGTGGAGGCTTTAGAAAAGATGCCCAACTACATGAACTTTATGAAGGATATTTTGTCCAAGA
390 ATTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGA
* * * * *
56564098 AGAAACGGCTTACTGAGTATGAGACTATTTCTTTGAATAAGAAGTGCAGTGTGTTCTTAAAGAAC
455 AGAAATGGCTTAATGAGTATGAGACTATTGCTTTGAAAAAG-AGTGCAGTGTGTTCTTACAGAAC
** *
56564163 AAGGTATATCCGAAACTAAAGGACCCTGGAAGCTTTACGAAACCATGTAACATCAGAAAATATTA
519 AAGGTACCTCCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAAAATATTA
*
56564228 CTACAGTGAAGCTTTGTATGACATTGGAGCAAGCATCAACTTGATGCCCAAATCTATTTCCAAAC
584 CTACAGTGAAGCTTTGTATGACATTGGAGCAAGCATCAACTTGATGCCCAAATCTATTTTCAAAC
*
56564293 TATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGAGGATCATTCGTTAGCA
649 TATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCA
56564358 TATCCTGAGGGAAAAGCTTCGA
714 TATCCTGAGGGAAAAGCTTCGA
* * *
56564380 AGTAGACCACAAAGAGATTTGATGAGCGATATAGAAAATCCAAGGAGTTTGGGTAAAAAGCATTG
1 AGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTG
* * * *
56564445 CGAATTGGTAGCATTATGAAGTGATAAGATTTTGAAACCCAATGAGGTTGTGATTGAAGATTAGC
66 CAAATTGGTTGCATTATGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTAGC
* *
56564510 CTACTGAGAAGGACGAAAGTCAACCAAAAGTTGAAGTTCATATACTAAAAAAATAAGATGCTGAA
131 CTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAA
56564575 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACT
196 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACT
* ** *
56564640 TCTTTAAAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCAGAAAATTTTCAACAGAATAAGC
261 TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGC
* * * * * *
56564705 AGAAACAAGTGGTACAATTCGAA-AAGTTCTTTGATGTTCTAATGCAACTTCACATGAACATCTC
326 AGAAACAAGAGGTACAATT-TAAGAAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCC
*
56564769 ATTGGTGGAGGTTTTAGAATAGATGCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGA
390 ATTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGA
*
56564834 AGAAATGGCTAAATGAGTATGAGACTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAAC
455 AGAAATGGCTTAATGAGTATGAGACTATTGCTTTGA-AAAAGAGTGCAGTGTGTTCTTACAGAAC
* * * * *
56564899 AAGTTACCTCCGAAACTAAAGGACCTTGGAAGCTTTCCGATACCATGTAACATCAGAGAATCTTA
519 AAGGTACCTCCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAAAATATTA
* * * * *
56564964 CTGCGGTGAAGCTTTGTAGGACATTTGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAAC
584 CTACAGTGAAGCTTTGTATGACATTGGAGCAAGCATCAACTTGATGCCCAAATCTATTTTCAAAC
* * * *
56565029 TATTGAGAATAGGTGAAGTTAGTCCCACTACTGTGACACTTCAACTTGCGGATCATTCGTTAGCA
649 TATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCA
* *
56565094 TATCCTGAGGGAAAAGTTTCGT
714 TATCCTGAGGGAAAAGCTTCGA
* * * * * *
56565116 AGTAGACCACAAAGAGCTTTGCA-AAACGATACAAAAAATCCAAGGAGTTTGGATAAGAAGTAAT
1 AGTAGACCACAAAGAGCTTTG-ATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATT
* * * *
56565180 ACAAATTGGTTGC-TTTTCGAAGTGATATGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTA
65 GCAAATTGGTTGCATTAT-GAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTA
* * * *
56565244 GCCTACTGAGAATGAGGAAAGGCAACCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGAAGTTG
129 GCCTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTG
* * * ** *
56565309 AAAAATATGATAAGGTAAACCCTAAACAAGTAAATTCTAATAAGCTAACAATTTTTTCAAATTTA
194 AAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTA
* * * *
56565374 CTTCCTTAGAAAAGCTGTCCATATCAACATAGAGTTCCATATCCTCAAAATCATCAACAGAATAA
259 CTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAA
* * * * *
56565439 GCAGAAACTAGAGGTACAATTTAAGAAGTTCTTGGATGTACTAAAGTAACTTCAGATCAACATTC
324 GCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCC
** * * *
56565504 TTTTGGTGGAGGCTTTAAAATAGATGCCCAACTACATTAAGTTTATGACGGATATTTTGTCCAAG
389 CATTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAG
* * * * *
56565569 AACAAATAGTTTAATGAGTATGAGACTATTTCTTTGAAAAAGGAGTGAAGTGTGTTCTTACAGAA
454 AAGAAATGGCTTAATGAGTATGAGACTATTGCTTTGAAAAA-GAGTGCAGTGTGTTCTTACAGAA
* * * *
56565634 CAAGGTATCTCCCAAACTAAAGGACCCTGGAAGCTTTATGATACCATGTAACATCAGAGAATATT
518 CAAGGTACCTCCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAAAATATT
* * * *
56565699 ATTACGGTGAAGCTTTGTACGACATTGGAGCAAGCATAAACTTGATGCCCAAATCTATTTTCAAA
583 ACTACAGTGAAGCTTTGTATGACATTGGAGCAAGCATCAACTTGATGCCCAAATCTATTTTCAAA
* *
56565764 CTATTGGGAATAGGTGAAGTAAGACCTAATACTATGACACTTCAACTTGCGGATCATTCGTTAGC
648 CTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGC
*
56565829 ATATCCTG-GGGAAAAGCTTCGT
713 ATATCCTGAGGGAAAAGCTTCGA
* * *
56565851 AGTAGACCATAAAGAGCTTTGATGAGCGATATAGAAAATCCAAGGAGTTTGGGTAAAAAGCATTG
1 AGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTG
56565916 CAAATTGGTTGCATTATGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTAGC
66 CAAATTGGTTGCATTATGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTAGC
* *
56565981 CTACTGAGAAGGACGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAA
131 CTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAA
** * *
56566046 AAGCATGATAAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACGTTTTTCAGATTTACT
196 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACT
* * * ** *
56566111 TGTTTAAAAAAGTTGTCCATATCAACCTAAAGTTCCATATCCAAAAAATATTCAACAGAATAAGC
261 TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGC
* * *
56566176 AGAAACAAGAGGTACAATTCAAAAATTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCCA
326 AGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCCA
56566241 TTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAG
391 TTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAG
56566280 CTACCTCAGA
Statistics
Matches: 2356, Mismatches: 265, Indels: 29
0.89 0.10 0.01
Matches are distributed among these distances:
734 90 0.04
735 1108 0.47
736 1151 0.49
737 7 0.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.27
Consensus pattern (735 bp):
AGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTG
CAAATTGGTTGCATTATGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTAGC
CTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAA
AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACT
TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGC
AGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCCA
TTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAA
GAAATGGCTTAATGAGTATGAGACTATTGCTTTGAAAAAGAGTGCAGTGTGTTCTTACAGAACAA
GGTACCTCCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAAAATATTACT
ACAGTGAAGCTTTGTATGACATTGGAGCAAGCATCAACTTGATGCCCAAATCTATTTTCAAACTA
TTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCATA
TCCTGAGGGAAAAGCTTCGA
Found at i:56566878 original size:643 final size:642
Alignment explanation
Indices: 56565647--56566919 Score: 1956
Period size: 643 Copynumber: 2.0 Consensus size: 642
56565637 GGTATCTCCC
** *
56565647 AAACTAAAGGACCCTGGAAGCTTTATGATACCATGTAACATCAGAGAATATTATTACGGTGAAGC
1 AAACTAAAGGACCCTGGAAGCTCCACGATACCATGTAACATCAGAGAATATTATTACGGTGAAGC
*
56565712 TTTGTACGACATTGGAGCAAGCATAAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAG
66 TTTGTACGACATTGGAGCAAACATAAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAG
*
56565777 GTGAAGTAAGACCTAATACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGGGGAA
131 GTGAAGAAAGACCTAATACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGGGGAA
* * *
56565842 AAGCTTCGTAGTAGACCATAAAGAGCTTTGATGAGCGATATAGAAAATCCAAGGAGTTTGGGTAA
196 AAGCTTCGTAGTAGACCACAAAGAACTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAA
** * *
56565907 AAAGCATTGCAAATTGGTTGCATTATGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTG
261 AAAGCATCACAAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGATGTGATTG
*
56565972 AAGATTAGCCTACTGAGAAGGACGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAA
326 AAGATTAGCCTACTGAGAAGGACGAAAGGCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAA
* *
56566037 GATGCTGAAAAGCATGATAAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACGTTTTTC
391 GATGCTGAAAAACATGATAAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTC
*
56566102 AGATTTACTTGTTTAAAAAAGTTGTCCATATCAACCTAAAGTTCCATATCCAAAAAATATTCAAC
456 AGAATTACTTGTTTAAAAAAGTTGTCCATATCAACCTAAAGTTCCATATCCAAAAAATATTCAAC
* * *
56566167 AGAATAAGCAGAAACAAGAGGTACAATTCAAAAATTTCTTGGATGTTCTAAAGCAACTTCACATC
521 AGAATAAGCAGAAACAAGAGGTACAATTCAAAAAGTTCTTGGATGTTCTAAAACAACTCCACATC
56566232 AACATCCCATTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGCTACCTCAG
586 AACATCCCATTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGCTACCTCAG
* * * * *
56566289 AAACTAAAGGACCTTGGAAGCTCCCCGATATCATGTAACATCAGAGAATCTTATTGCGGTGAAGC
1 AAACTAAAGGACCCTGGAAGCTCCACGATACCATGTAACATCAGAGAATATTATTACGGTGAAGC
* * * *
56566354 TTTGTATGACATTTGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATGG
66 TTTGTACGACATTGGAGCAAACATAAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAG
* * * *
56566419 GTTAAGAAAGA-CTCACTACTGTGACACTTCAACTTGCGGATCATTTGTTAGCATATCCTGAGGG
131 GTGAAGAAAGACCT-AATACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTG-GGG
* * * *
56566483 AAAAGCTTTGTAGTAGACCACAAAGAACTTTGCTGAGTGATACAGAAAATCCAATGAGTTTGGGT
194 AAAAGCTTCGTAGTAGACCACAAAGAACTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGT
* * *
56566548 AAGAAGCATCACAAATTGTTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGTGGATGTGAT
259 AAAAAGCATCACAAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGATGTGAT
*
56566613 TGAAGATTAGCCTACTGAGAAGGAGGAAAGGCAACCAAAAGTTGAAGTTCTTATACT-AAAAATA
324 TGAAGATTAGCCTACTGAGAAGGACGAAAGGCAACCAAAAGTTGAAGTTCTTATACTGAAAAA-A
* * *
56566677 TAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTTAGAAGCTAACACCTTT
388 TAAGATGCTGAAAAACATGATAAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTT
* ** * * * *
56566742 TTCAGAATTACTTTTTTGGAGAATTTGTCCATATCAACCTAAAGTTCCATATCCTAAAAATCTTC
453 TTCAGAATTACTTGTTTAAAAAAGTTGTCCATATCAACCTAAAGTTCCATATCCAAAAAATATTC
* * * * * * * *
56566807 AATAGAATAAGTAGAAACAAGAGGTATAATTTAAGAAGTTCTTGTATGTTCTAAAATAACTCCAG
518 AACAGAATAAGCAGAAACAAGAGGTACAATTCAAAAAGTTCTTGGATGTTCTAAAACAACTCCAC
** *
56566872 ATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCTAACTACATG
583 ATCAACATCCCATTGGTGGAGGCTTTAGAATAGATGCCCAACTACATG
56566920 TAGTTTATGA
Statistics
Matches: 567, Mismatches: 61, Indels: 5
0.90 0.10 0.01
Matches are distributed among these distances:
641 2 0.00
642 174 0.31
643 391 0.69
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (642 bp):
AAACTAAAGGACCCTGGAAGCTCCACGATACCATGTAACATCAGAGAATATTATTACGGTGAAGC
TTTGTACGACATTGGAGCAAACATAAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAG
GTGAAGAAAGACCTAATACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGGGGAA
AAGCTTCGTAGTAGACCACAAAGAACTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAA
AAAGCATCACAAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGATGTGATTG
AAGATTAGCCTACTGAGAAGGACGAAAGGCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAA
GATGCTGAAAAACATGATAAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTC
AGAATTACTTGTTTAAAAAAGTTGTCCATATCAACCTAAAGTTCCATATCCAAAAAATATTCAAC
AGAATAAGCAGAAACAAGAGGTACAATTCAAAAAGTTCTTGGATGTTCTAAAACAACTCCACATC
AACATCCCATTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGCTACCTCAG
Done.