Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 170 of 210
Found at i:56567687 original size:736 final size:735
Alignment explanation
Indices: 56566277--56573585 Score: 9813
Period size: 736 Copynumber: 10.0 Consensus size: 735
56566267 CAACTACATG
* *** * *
56566277 AAGCTACC-TCAGAAACTAAAGGACCTTGGAAGCTCCCCGATATCATGTAACATCAGAGAATCTT
1 AAGCTACCTTC-GAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATT
* * *
56566341 ATTGCGGTGAAGCTTTGTATGACATTTGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAA
65 ACTGCGGTGAAGCTTTGTACGACATTGGAG-AAACATCAACTTGATGCCCAAATCTATTTTCAAA
* * * * * *
56566406 CTATTGGGAATGGGTTAAGAAAGACTCACTACTGTGACACTTCAACTTGCGGATCATTTGTTAGC
129 CTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGC
* * * *
56566471 ATATCCTGAGGGAAAAGCTTTGTAGTAGACCACAAAGAACTTTGCTGAGTGATACAGAAAATCCA
194 ATATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCA
* ** * *
56566536 ATGAGTTTGGGTAAGAAGCATCACAAATTGTTTGCATTACGAAGTGGTAAGATTTTGAAACCCAA
259 AGGAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAA
* * * * *
56566601 GGTGGATGTGATTGAAGATTAGCCTACTGAGAAGGAGGAAAGGCAACCAAAAGTTGAAGTTCTTA
324 GGAGGTTGTGATTGAAGATGAGCCTACTGAGAAAGAGGAAAGTCAACCAAAAGTTGAAGTTCTTA
* *
56566666 TACTAAAAATATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTTAGAAG
389 TACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAG
* * * * * *
56566731 CTAACACCTTTTTCAGAATTACTTTTTTGGAGAATTTGTCCATATCAACCTAAAGTTCCATATCC
454 CTAACACCTTTTTCAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCC
* * * * *
56566796 TAAAAATCTTCAATAGAATAAGTAGAAACAAGAGGTATAATTTAAGAAGTTCTTGTATGTTCTAA
519 TCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTAA
** * * * *
56566861 AATAACTCCAGATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCTAACTACATGTAGTTT
584 AGCAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTT
* *
56566926 ATGAAGGATATTTTTTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAAGGA
649 ATGAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAAAGA
* *
56566991 GAGCAGTGTGTTCTTACAGAAT
714 GTGCAGTGTGTTCTTACAGAAC
* * *
56567013 AAGCTACCTTCGAAACTAAAGGACCCTGAAAGCTTTTCGATACCATGTAACATCAGGGAATATTA
1 AAGCTACCTTCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTA
*
56567078 CTGCGGTGAAGCTTTGTACGACATTAGAGAAAGCATCAACTTGATGCCCAAATCTATTTTCAAAC
66 CTGCGGTGAAGCTTTGTACGACATTGGAGAAA-CATCAACTTGATGCCCAAATCTATTTTCAAAC
* * *
56567143 TATTGGGAATAGGTGAAGTAGGACCCATTACTATGACACTTCAACTTGTGGATCATTCGTTAGCA
130 TATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCA
* *
56567208 TATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTT-ACTGAGTGATACAGAAAATCTA
195 TATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGA-TGAGCGATACAGAAAATCCA
** * **
56567272 AGGAGTTTGGGTAAGAAGCATTGAAAATTGGTTGCATTTCGAAGTGGTAAGATTTTGAAACTGAA
259 AGGAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAA
* * *
56567337 GGAGATTGTGATTGAAGATGAGCGTACTGAGAAAGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTA
324 GGAGGTTGTGATTGAAGATGAGCCTACTGAGAAAGAGGAAAGTCAACCAAAAGTTGAAGTTCTTA
* * *
56567402 TACTAAAAAAATAAGATGCTAAAAAATATGATGAGGTAAACCCTGAACTTGTAAATTCTAAGAAG
389 TACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAG
* *
56567467 CTAACACCTTTTTCAGATTTAATTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTGCATATCC
454 CTAACACCTTTTTCAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCC
* * *
56567532 TCAAAATCTTCAACACAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTAGATGTTTTAA
519 TCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTAA
* * * *
56567597 AGTAACTTCAGATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCAAACTAAATGAAGTTT
584 AGCAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTT
* * *
56567662 ATGAAGCATATTCTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTACTTTGA-AAAAGG
649 ATGAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAAA-G
*
56567726 AGTGCAGTGTGTTCTTACAGAAA
713 AGTGCAGTGTGTTCTTACAGAAC
* * * * * *
56567749 AAGGTATCTCCAAAACTAAAGGACCCTAGAAGCTTTACGATACCATGTAACATTAGAGAATATTA
1 AAGCTACCTTCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTA
* *
56567814 CTGCGGTGAAGCTTTGTACGACATTGGAGCAAGCATCAATTTGATGCCCAAATCTATTTTCAAAC
66 CTGCGGTGAAGCTTTGTACGACATTGGAG-AAACATCAACTTGATGCCCAAATCTATTTTCAAAC
* * * *
56567879 TTTTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGTTCATACGTTAGCT
130 TATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCA
* *
56567944 TATCCTAAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATATAGAAAATCCAA
195 TATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAA
* ** * **
56568009 GGAGTTTGGGTAAAAAGTGTTGCGAATTGATTGCATTACGAAGTGGTATTATTTTGAAACCCAAG
260 GGAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAG
* * * * * * *
56568074 GAGGTTGTGATTGAAGATTAGCTTACTGAGAAGGACGAAAGTCAACTAAAATTTGAAGTTCCTAT
325 GAGGTTGTGATTGAAGATGAGCCTACTGAGAAAGAGGAAAGTCAACCAAAAGTTGAAGTTCTTAT
* * *
56568139 ATTAAAAAAATAAGATTCTGAAAAATATGATGAGGTAAACCCTAAATTAGTAAATTCTAAGAAGC
390 ACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGC
* * * * *
56568204 TAAAACCTTTTCCAGATTTACTTCTTTAAAAAAGTTTTCCATATCAACCTAAAGTTCCATATCCT
455 TAACACCTTTTTCAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCT
*
56568269 CAAAATC-T--------T---C----A-AA-A--T-C--TTCAA-AAGTTCTTGGATGTTCTAAA
520 CAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCT-AA
* * * *
56568310 AGCAACTTCACTTCAACATACC-ATTGGTGGAGGGTTTTGAATAGATGCCCAACTACATGAAGTT
584 AGCAACTTCACATCAACAT-CCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTT
* * * * *
56568374 TATGATGGATATTTTGTCCAAGAAGAAA-AGGCTAAATAAGTATGAGACTATTGCTTTGACAGAA
648 TATGAAGGATATTTTGTCCAAGAAGAAATA-GCTTAGTGAGTATGAGACTATTGCTTTGACAAAA
56568438 GAGTGCAGTGTGTTCTTACAGAAC
712 GAGTGCAGTGTGTTCTTACAGAAC
* * * *
56568462 AAGCTACCTCCGAAACTAAAGGACCTTGGAAGCTTTCCGATACCATGTAACATCAAAGAATATTA
1 AAGCTACCTTCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTA
* * * * * *
56568527 CTACGGTGAAGCTTTGTACTACATTGGAGCAAGCATAAACTTGATGCCAAAATCTATCTTCAAAC
66 CTGCGGTGAAGCTTTGTACGACATTGGAG-AAACATCAACTTGATGCCCAAATCTATTTTCAAAC
* * *
56568592 TATTGGGAATAGGTGAAGTAAAACCCACTACTATGACACTTCAACTTGTGGATCATTCGTTAGCC
130 TATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCA
* * * *
56568657 TATCTTGAGGGAAAAGCTTCATAGTAGACCACAAAGAGCTTTGATGAACGATATAGAAAATCCAA
195 TATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAA
* ** * *
56568722 GGAGTTTGGGTAAAAAGTGTTGCGAATTGGTTGTATTATGAAGTGGTAAGATTTTGAAACCCAAG
260 GGAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAG
* * *
56568787 GAGGTTGTGATTGAAGATTAGCCTACT-ACG-AAGAAGGAAAGGT-AGCCAAAAGTTGAAGTTTT
325 GAGGTTGTGATTGAAGATGAGCCTACTGA-GAAAG-AGGAAA-GTCAACCAAAAGTTGAAGTTCT
*
56568849 TATACTAAAAATATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGA
387 TATACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGA
* * * * * *
56568914 AGCTAACACCTTTTTCAGATTTCCTCCTTTAGAAAATTTGTCCATATCAACCTACAATTCTATAT
452 AGCTAACACCTTTTTCAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATAT
* *
56568979 CCTAAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGTATGTTCT
517 CCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCT
* * * * * *
56569044 AAAGTAACTCCAGATCAACATCTTTTTGGTGGAGGCTTTAGAATAGATGCCAAACTACATGTAG-
582 AAAGCAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGT
* * * *
56569108 TTATGAAGGATATTTTTTCAAAGAAGAAATAGCTTAGTGAGTATGGGACTATTGCTTTGACAAAT
647 TTATGAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAAA
*
56569173 GAGTGCAGTGTGTTCTTACAGAAG
712 GAGTGCAGTGTGTTCTTACAGAAC
** *
56569197 AAGCTACC-TCGGAAACTAAAGGACTGTGGAAGC-TTATGATACCATGTAACATCAGAGAATATT
1 AAGCTACCTTC-GAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATT
*
56569260 ACTGCGGTGAAGCTTTGTACGACATTGGAGCAAGCATCAACTTGATGCCCAAATCTATTTTCAAA
65 ACTGCGGTGAAGCTTTGTACGACATTGGAG-AAACATCAACTTGATGCCCAAATCTATTTTCAAA
* * *
56569325 CTATTGAGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGTGGATCATACGTTAGC
129 CTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGC
* * * ** * *
56569390 ATATCCTGAGGGAAAATCTTTGTAGTCGACCACAAAGAGCTTTTCTGAGCGATACATAAAATCTA
194 ATATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCA
* * * * * *
56569455 AGGAGTTTGGGTAAGAAGCATTGCAAATTGGTTGCATTTCAAAGCGGTAAGATTTTGCAACCGAA
259 AGGAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAA
** * * *
56569520 GGAGGTTGTGATTGAAGATGAGTGTATTGA-AAAGGAGGAAATTCAGCCAAAAGTTGAAGTTCTT
324 GGAGGTTGTGATTGAAGATGAGCCTACTGAGAAA-GAGGAAAGTCAACCAAAAGTTGAAGTTCTT
* *
56569584 AGACTAAAAAAATAAGATGGTG-AAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAA
388 ATACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAA
* *
56569648 GCTAACACCTTTTTTAGAATTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATC
453 GCTAACACCTTTTTCAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATC
* *
56569713 CTCAAAATCTTCAACAGAATAAGCAAAAACAAGAGGTACAATTTAAGAAGTTCTTGTATGTTCTA
518 CTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTA
** * *
56569778 AAGCAACTTCACATCAACATCCCGTTGGTGAAGGCTTTAGAATAGATGCCCAACTACATTAAGTT
583 AAGCAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTT
*
56569843 TATGAAGGATATTTTGTCCAAGAAGAAAT-GACTTACTGAGTATGAGACTATTGCTTTGACAAAA
648 TATGAAGGATATTTTGTCCAAGAAGAAATAG-CTTAGTGAGTATGAGACTATTGCTTTGACAAAA
*
56569907 GAGTGTAGTGTGTTCTTACAGAAC
712 GAGTGCAGTGTGTTCTTACAGAAC
* * * **
56569931 AAGCTACCTTGGAAACTAAAGGACCCTGGAAGCTTTACAATACCATGTAACATTAGAGAATCGTA
1 AAGCTACCTTCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTA
* * * * * *
56569996 CTGCTGTGAAGTTTTGTATGAAATT-TACGCAAACATCATCTTGATGCCCAAATCTATTTTCAAA
66 CTGCGGTGAAGCTTTGTACGACATTGGA-G-AAACATCAACTTGATGCCCAAATCTATTTTCAAA
**
56570060 CTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAAA
129 CTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGC
*
56570125 ATATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATATAGAAAATCCA
194 ATATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCA
* * * *
56570190 GGGAGTTTGGGTAAGAAGCATTGAGATTTGGCTGCATTACGAAGTGGTAAGATTTTGAAACCCAA
259 AGGAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAA
** * *
56570255 GGAGGTTGTGATTGAAGATGAGCCTACTGAG-GCGTAGAAAAGTCAACCAAAAGCTGAAGTTCTT
324 GGAGGTTGTGATTGAAGATGAGCCTACTGAGAAAG-AGGAAAGTCAACCAAAAGTTGAAGTTCTT
* * *
56570319 ATACTAAAAAAATAAGATGCTGAAAAATATGATAAGGTAAACCCTAAACTAGTAAATTTTAAAAA
388 ATACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAA
* * * * *
56570384 GCTAACACATTTTTCCA-ATTTACTTCATTAAAAAAGTTGTCCATATTAACCGAGAGTTCCATAT
453 GCTAACACCTTTTT-CAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATAT
*
56570448 CCTCAAAATCTTCAACAGAATAAGCAAAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCT
517 CCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCT
* * ** *
56570513 AAAGAAACTTCACATCAACTTCCCATTGGTGGAGGCTTTATAATAGATGCCCAACATA-ATGAAG
582 AAAGCAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAAC-TACATGAAG
* * * *
56570577 TTTATGAAGGATATTTTGTCTAAGAAGAAATGGCTTACTGAGTATGAGACTATTGCATTGACAAA
646 TTTATGAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAA
56570642 AGAGTGCAGTGTGTTCTTACAGAAC
711 AGAGTGCAGTGTGTTCTTACAGAAC
**
56570667 AAGCTACC-TCTGAAACTAAAGGACCCTCAAAGCTTTACGATACCATGTAACATCAGAGAATATT
1 AAGCTACCTTC-GAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATT
** * * * * *
56570731 TTTGCGGTGAAGCTTTGGACAACATTGGAGCAAGCATCAACTTGATGCCCAAATATAATTTCAAA
65 ACTGCGGTGAAGCTTTGTACGACATTGGAG-AAACATCAACTTGATGCCCAAATCTATTTTCAAA
* * *
56570796 CTATTGGGAATAGGTGAAGTAAGGCCCACTAGTATGACACTTCAAGTTGCGGATCATTCGTTAGC
129 CTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGC
* * * * * *
56570861 GTATCCTGAGGGAAAAGCTTCGTAGTAGAGCAAAAAGAGCTTTGATGAACGATATAGAAAATACA
194 ATATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCA
** ** *
56570926 AGGAGTTTAAGTAA-AAATATTGCGAATTGGTTGTATTACGAAGTGGTAAGATTTTGAAACCCAA
259 AGGAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAA
* * * *
56570990 GGAGGTTGTGATTGAAGATTAGCCTATTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAATTCTTA
324 GGAGGTTGTGATTGAAGATGAGCCTACTGAGAAAGAGGAAAGTCAACCAAAAGTTGAAGTTCTTA
* *
56571055 TACT--AAAAA-AA-ATGCTAAAAAATATGATGTGGTAAACCCTAAACTAGTAAATTCTAAGAAG
389 TACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAG
* * *
56571116 CTAACACCTTTTT-TGAATTTACTTCTTTAAAAAAGTTGTCCATATCAACCTTGAGTTCCATATC
454 CTAACACCTTTTTCAG-ATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATC
*
56571180 CTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAAAAGTTCTTGGATGTTCTA
518 CTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTA
* ** * * *
56571245 AAGAAACTTCACATCAACATCCTAATGGGGGAGGCTTTAGAATAGACGTCCAACTACATGAAG--
583 AAGCAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTT
* *
56571308 T-T------TA-----T-------G----A----AG-GA--A--A-A-T-TTGCTTTGAAAAAAT
648 TATGAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAAAG
56571338 AGTGCAGTGTGTTCTTACAGAAC
713 AGTGCAGTGTGTTCTTACAGAAC
* * * * * * * *
56571361 AAGCTACCTCCGGAACTAGCA-GACACTGGAAGCTTTCCGATACCATGAAACATTAGAGAATCTT
1 AAGCTACCTTCGAAACTA-AAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATT
* * ** * *
56571425 ACTGCAGTAAAGCTTTGTTGGACATTTGAGGAAACATCAACTTGATGCCTAAATCTATTTTCAAA
65 ACTGCGGTGAAGCTTTGTACGACATTGGA-GAAACATCAACTTGATGCCCAAATCTATTTTCAAA
* * *
56571490 CTATTGGGAATAGGTGAAGTAAGACCCAGTACTATGACACTTTAACTCGCGGATCATTCGTTAGC
129 CTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGC
*
56571555 ATATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGCTGAGCGATACAGAAAATCCA
194 ATATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCA
* * * * *
56571620 AGGAGTTTGGGTACGAAGCATT-CCAATTGGTTGCATTTCGAAGTGGTAAGATTTTGAAATCGAA
259 AGGAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAA
* ** * * * ** * *
56571684 GGAGGTTGTGATTTAATTTGAGCGTACTGAGAAAAAGGAATGTCAGGCAAAACTTAAAGTTCTTA
324 GGAGGTTGTGATTGAAGATGAGCCTACTGAGAAAGAGGAAAGTCAACCAAAAGTTGAAGTTCTTA
* *
56571749 TACTGAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTATGAAG
389 TACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAG
* * * *
56571814 TTAACACCTTTTTTAGACTTACTTCTTTAGAAAAGTTGTCCATCTCAACCTAGAGTTCCATATCC
454 CTAACACCTTTTTCAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCC
* *
56571879 TCAAAATCTTCAACAGAATAAGCAAAAACAAGAGGTACAATTTAAAAAGTTCTTGGATGTTCTAA
519 TCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTAA
*
56571944 AGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTT
584 AGCAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTT
** * * * * * *
56572009 ATGAAGGATATTTTGAGCAAGAAGAAATGGCTTACTGAATATGAGATTATTTCTTTGATAAAAGA
649 ATGAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAAAGA
56572074 GTGCAGTGTGTTCTTACAGAAC
714 GTGCAGTGTGTTCTTACAGAAC
* * * ** *
56572096 AAGCTACCTTGGAAACAAAAGGACCCTGGAAGCTTCATAATACTATGTAACATCAGAGAATCA-T
1 AAGCTACCTTCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAAT-ATT
* * * * *
56572160 ACTCCGGTGAAACTTTGTATGACATTTGAGCAAACATCAAATTGATGCCCAAATCTATTTTCAAA
65 ACTGCGGTGAAGCTTTGTACGACATTGGAG-AAACATCAACTTGATGCCCAAATCTATTTTCAAA
* * ** * *
56572225 CTATTGGGAATAAGTGAAGTAAGACCCACTACTATGACACTTCAATTTG-AAAACTTTCGTTAGC
129 CTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGC
*
56572289 ATATCCTGAAGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCA
194 ATATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCA
* * *
56572354 AGGAGTTTGGGTAAGAAGCATTGAGAATTGGTTGCATTCCGAAGTGGTAAGATTTTGAAACCCAT
259 AGGAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAA
* * * * *
56572419 GGAGGTTGTGATTGAAAATGAGTCTACTGAG-ACGCAGGAAAGTTAACCAAAAGCTGAAGTTCTT
324 GGAGGTTGTGATTGAAGATGAGCCTACTGAGAAAG-AGGAAAGTCAACCAAAAGTTGAAGTTCTT
* * *
56572483 ACACTAAAATAATAAGATGCTGAAAAATATGATGAGGTAAACTCTAAACTAGTAAATTCTAAGAA
388 ATACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAA
* *
56572548 GCTAACACATTTTTCAGATTTATTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATC
453 GCTAACACCTTTTTCAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATC
* *
56572613 CTCAAAATCTTCAACAGAATAAGTAGAAACAAGAGGTGCAATTTAAGAAGTTCTTGGATGTTCTA
518 CTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTA
* **
56572678 AAGCAACTCCACATCAACATCCCGTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTT
583 AAGCAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTT
* * * * *
56572743 TATGAAGGATATTTTGTCCAGGAAGAAATGGGTTAATGAGTATGAGACTATTGCTTTAACAAAAG
648 TATGAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAAAG
* *
56572808 AGTGCAGTATGTTCTTACAGAAT
713 AGTGCAGTGTGTTCTTACAGAAC
* * * * *
56572831 AAGCTACCTCCAAAACTAAAGGACCCTGGAAGCGTTACGATACCATGTTACATCAGATAATATTA
1 AAGCTACCTTCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTA
* ** * *
56572896 TTATGGTGAAGCTTTGCACGACATTTGAGCAAACATCAACTTGATGCCCAAATCTATTTT-AAAT
66 CTGCGGTGAAGCTTTGTACGACATTGGAG-AAACATCAACTTGATGCCCAAATCTATTTTCAAA-
* * * *
56572960 CTATTGGAAATAGGTGAAGTAAGACCCACAATTGTGACACTTCAACTTGCGGATCATTCGTTAGC
129 CTATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGC
* * *
56573025 ATATCCTAAGGGAAAAGCTTCGTAGTAAACCAAAAAGAGCTTTGATGAGCGATACAGAAAATCCA
194 ATATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCA
* * *
56573090 AGGAGTTTGGGTAAGAAGCATTTC-AATTTGGTTGTATTACGAAGTGGTAAGATTTTGAAACCTA
259 AGGAGTTTGGGTAAGAAGCATTGCGAA-TTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCA
* * * *
56573154 AGGAGGTTGTAATTGAAAATGAGCCTACTGAGAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTT
323 AGGAGGTTGTGATTGAAGATGAGCCTACTGAGAAAGAGGAAAGTCAACCAAAAGTTGAAGTTCTT
* *
56573219 ATTCTAAAAAAATAAGATGGTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAA
388 ATACTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAA
* * * *
56573284 GCTAACACCTTTTTTAGATTCACTTCTTTAGAAATGTTGTCCATATGAACCTAGAGTTCCATATC
453 GCTAACACCTTTTTCAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATC
* *
56573349 CTCAAAATCTTCAATAGAATAAGCAGAAAGAAGAGGTACAATTTAAGAAG-TCTTGGATGTTCTA
518 CTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTA
** * * *
56573413 AAATAACTTTAGATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGATGTT
583 AAGCAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTT
* *
56573478 TATGAAGGATATTTTGTCCAAGAAGAAATGGCTTAGTGAGTATGAGACTATTGCTTTGACAAAGG
648 TATGAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAAAG
*
56573543 AGTGCAGTGTGTTCTTACAGTAC
713 AGTGCAGTGTGTTCTTACAGAAC
56573566 AAGCTACC-TCTGAAACTAAA
1 AAGCTACCTTC-GAAACTAAA
56573586 TGATAGGAGG
Statistics
Matches: 5777, Mismatches: 678, Indels: 237
0.86 0.10 0.04
Matches are distributed among these distances:
694 355 0.06
695 9 0.00
696 6 0.00
697 3 0.00
698 224 0.04
699 2 0.00
700 1 0.00
701 3 0.00
702 1 0.00
707 2 0.00
710 1 0.00
712 19 0.00
713 599 0.10
714 8 0.00
715 1 0.00
716 1 0.00
717 1 0.00
718 1 0.00
719 3 0.00
720 1 0.00
722 3 0.00
724 1 0.00
725 1 0.00
727 2 0.00
728 3 0.00
729 2 0.00
730 5 0.00
731 218 0.04
732 3 0.00
733 224 0.04
734 542 0.09
735 1447 0.25
736 2057 0.36
737 28 0.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (735 bp):
AAGCTACCTTCGAAACTAAAGGACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTA
CTGCGGTGAAGCTTTGTACGACATTGGAGAAACATCAACTTGATGCCCAAATCTATTTTCAAACT
ATTGGGAATAGGTGAAGTAAGACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCAT
ATCCTGAGGGAAAAGCTTCGTAGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAG
GAGTTTGGGTAAGAAGCATTGCGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGG
AGGTTGTGATTGAAGATGAGCCTACTGAGAAAGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATA
CTAAAAAAATAAGATGCTGAAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCT
AACACCTTTTTCAGATTTACTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTC
AAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCTTGGATGTTCTAAAG
CAACTTCACATCAACATCCTTTTGGTGGAGGCTTTAGAATAGATGCCCAACTACATGAAGTTTAT
GAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGAGACTATTGCTTTGACAAAAGAGT
GCAGTGTGTTCTTACAGAAC
Found at i:56569525 original size:734 final size:736
Alignment explanation
Indices: 56568290--56573585 Score: 7294
Period size: 735 Copynumber: 7.3 Consensus size: 736
56568280 AAATCTTCAA
* * * *
56568290 AAGTTCTTGGATGTTCTAAAAGCAACTTCACTTCAACATACC-ATTGGTGGAGGGTTTTGAATAG
1 AAGTTCTTGGATGTTCT-AAAGCAACTTCACATCAACAT-CCTGTTGGTGGAGGCTTTAGAATAG
* * * * *
56568354 ATGCCCAACTACATGAAGTTTATGATGGATATTTTGTCCAAGAAGAAAAGGCTAAATAAGTATGA
64 ATGCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTACTGAGTATGA
* *
56568419 GACTATTGCTTTGACAGAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCCGAAACTAAAGG
129 GACTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCGGAAACTAAAGG
* * * * *
56568484 ACCTTGGAAGCTTTCCGATACCATGTAACATCAAAGAATATTACTACGGTGAAGCTTTGTACTAC
194 ACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTACGAC
* * * * *
56568549 ATTGGAGCAAGCATAAACTTGATGCCAAAATCTATCTTCAAACTATTGGGAATAGGTGAAGTAAA
259 ATTGGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAG
* * * *
56568614 ACCCACTACTATGACACTTCAACTTGTGGATCATTCGTTAGCCTATCTTGAGGGAAAAGCTTCAT
324 ACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGT
* * * **
56568679 AGTAGACCACAAAGAGCTTTGATGAACGATATAGAAAATCCAAGGAGTTTGGGTAAAAAGTGTTG
389 AGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTG
* * * *
56568744 CGAATTGGTTGTATTATGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTAGC
454 CAAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGC
* * *
56568809 CTACT-ACGAAGAAGGAAAGGT-AGCCAAAAGTTGAAGTTTTTATACTAAAAATATAAGATGCTG
519 CTACTGA-GAAGGAGGAAA-GTCAGCCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTG
*
56568872 AAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTC
582 AAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTA
* * * * * *
56568937 CTCCTTTAGAAAATTTGTCCATATCAACCTACAATTCTATATCCTAAAAATCTTCAACAGAATAA
647 CTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAA
56569002 GCAGAAACAAGAGGTACAATTTAAG
712 GCAGAAACAAGAGGTACAATTTAAG
* * * * * *
56569027 AAGTTCTTGTATGTTCTAAAGTAACTCCAGATCAACATCTTTTTGGTGGAGGCTTTAGAATAGAT
1 AAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGAT
* * * * * * *
56569092 GCCAAACTACATGTAG-TTATGAAGGATATTTTTTCAAAGAAGAAATAGCTTAGTGAGTATGGGA
66 GCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTACTGAGTATGAGA
* *
56569156 CTATTGCTTTGACAAATGAGTGCAGTGTGTTCTTACAGAAGAAGCTACCTCGGAAACTAAAGGAC
131 CTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCGGAAACTAAAGGAC
** *
56569221 TGTGGAAGC-TTATGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTACGACAT
196 CCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTACGACAT
* *
56569285 TGGAGCAAGCATCAACTTGATGCCCAAATCTATTTTCAAACTATTGAGAATAGGTGAAGTAAGAC
261 TGGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGAC
* * * *
56569350 CCACTACTATGACACTTCAACTTGTGGATCATACGTTAGCATATCCTGAGGGAAAATCTTTGTAG
326 CCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGTAG
* ** * *
56569415 TCGACCACAAAGAGCTTTTCTGAGCGATACATAAAATCTAAGGAGTTTGGGTAAGAAGCATTGCA
391 TAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGCA
* * * * * **
56569480 AATTGGTTGCATTTCAAAGCGGTAAGATTTTGCAACCGAAGGAGGTTGTGATTGAAGATGAGTGT
456 AATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCT
* * * * *
56569545 ATTGAAAAGGAGGAAATTCAGCCAAAAGTTGAAGTTCTTAGACTAAAAAAATAAGATGGTG-AAA
521 ACTGAGAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAAAA
* *
56569609 ATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTTAGAATTACTTC
586 ATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTC
*
56569674 TTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAA
651 TTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAG
56569739 AAACAAGAGGTACAATTTAAG
716 AAACAAGAGGTACAATTTAAG
* * *
56569760 AAGTTCTTGTATGTTCTAAAGCAACTTCACATCAACATCCCGTTGGTGAAGGCTTTAGAATAGAT
1 AAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGAT
* *
56569825 GCCCAACTACATTAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGACTTACTGAGTATGAGA
66 GCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTACTGAGTATGAGA
* *
56569890 CTATTGCTTTGACAAAAGAGTGTAGTGTGTTCTTACAGAACAAGCTACCTTGGAAACTAAAGGAC
131 CTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCGGAAACTAAAGGAC
* * ** * * * *
56569955 CCTGGAAGCTTTACAATACCATGTAACATTAGAGAATCGTACTGCTGTGAAGTTTTGTATGAAAT
196 CCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTACGACAT
* *
56570020 T-TACGCAAACATCATCTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGA
261 TGGA-GCAAACATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGA
**
56570084 CCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAAAATATCCTGAGGGAAAAGCTTCGTA
325 CCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGTA
* *
56570149 GTAGACCACAAAGAGCTTTGATGAGCGATATAGAAAATCCAGGGAGTTTGGGTAAGAAGCATTG-
390 GTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGC
* *
56570213 AGATTTGGCTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGC
455 A-AATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGC
** * * * *
56570278 CTACTGAGGCGTAGAAAAGTCAACCAAAAGCTGAAGTTCTTATACTAAAAAAATAAGATGCTGAA
519 CTACTGAGAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAA
* * * *
56570343 AAATATGATAAGGTAAACCCTAAACTAGTAAATTTTAAAAAGCTAACACATTTTTCCA-ATTTAC
584 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTT-CAGATTTAC
* * * *
56570407 TTCATTAAAAAAGTTGTCCATATTAACCGAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAG
648 TTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAG
*
56570472 CAAAAACAAGAGGTACAATTTAAG
713 CAGAAACAAGAGGTACAATTTAAG
* * ** *
56570496 AAGTTCTTGGATGTTCTAAAGAAACTTCACATCAACTTCCCATTGGTGGAGGCTTTATAATAGAT
1 AAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGAT
*
56570561 GCCCAACATA-ATGAAGTTTATGAAGGATATTTTGTCTAAGAAGAAATGGCTTACTGAGTATGAG
66 GCCCAAC-TACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTACTGAGTATGAG
* *
56570625 ACTATTGCATTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCTGAAACTAAAGGA
130 ACTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCGGAAACTAAAGGA
** ** * *
56570690 CCCTCAAAGCTTTACGATACCATGTAACATCAGAGAATATTTTTGCGGTGAAGCTTTGGACAACA
195 CCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTACGACA
* * * *
56570755 TTGGAGCAAGCATCAACTTGATGCCCAAATATAATTTCAAACTATTGGGAATAGGTGAAGTAAGG
260 TTGGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGA
* * *
56570820 CCCACTAGTATGACACTTCAAGTTGCGGATCATTCGTTAGCGTATCCTGAGGGAAAAGCTTCGTA
325 CCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGTA
* * * * * ** **
56570885 GTAGAGCAAAAAGAGCTTTGATGAACGATATAGAAAATACAAGGAGTTTAAGTAA-AAATATTGC
390 GTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGC
* * *
56570949 GAATTGGTTGTATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATTAGCC
455 AAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCC
* * * *
56571014 TATTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAATTCTTATACT--AAAAA-AA-ATGCTAAAA
520 TACTGAGAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAAA
* *
56571075 AATATGATGTGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTT-TGAATTTACT
585 AATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAG-ATTTACT
* *
56571139 TCTTTAAAAAAGTTGTCCATATCAACCTTGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGC
649 TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGC
*
56571204 AGAAACAAGAGGTACAATTTAAA
714 AGAAACAAGAGGTACAATTTAAG
* ** * *
56571227 AAGTTCTTGGATGTTCTAAAGAAACTTCACATCAACATCCTAATGGGGGAGGCTTTAGAATAGAC
1 AAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGAT
*
56571292 GTCCAACTACATGAAG--T-T------TA-----T-------G-AA--G------GA--A--A-A
66 GCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTACTGAGTATGAGA
* * *
56571322 -T-TTGCTTTGAAAAAATAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCCGG-AACTAGCA-G
131 CTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCT-CGGAAACTA-AAGG
* * * * * * * **
56571383 ACACTGGAAGCTTTCCGATACCATGAAACATTAGAGAATCTTACTGCAGTAAAGCTTTGTTGGAC
194 ACCCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTACGAC
* * *
56571448 ATTTGAGGAAACATCAACTTGATGCCTAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAG
259 ATTGGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAG
* * *
56571513 ACCCAGTACTATGACACTTTAACTCGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGT
324 ACCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGT
* *
56571578 AGTAGACCACAAAGAGCTTTGCTGAGCGATACAGAAAATCCAAGGAGTTTGGGTACGAAGCATT-
389 AGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTG
* * * * * **
56571642 CCAATTGGTTGCATTTCGAAGTGGTAAGATTTTGAAATCGAAGGAGGTTGTGATTTAATTTGAGC
454 CAAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGC
* ** * * * * *
56571707 GTACTGAGAAAAAGGAATGTCAGGCAAAACTTAAAGTTCTTATACTGAAAAAATAAGATGCTGAA
519 CTACTGAGAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAA
* * * *
56571772 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTATGAAGTTAACACCTTTTTTAGACTTACT
584 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACT
*
56571837 TCTTTAGAAAAGTTGTCCATCTCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGC
649 TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGC
* *
56571902 AAAAACAAGAGGTACAATTTAAA
714 AGAAACAAGAGGTACAATTTAAG
56571925 AAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGAT
1 AAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGAT
** *
56571990 GCCCAACTACATGAAGTTTATGAAGGATATTTTGAGCAAGAAGAAATGGCTTACTGAATATGAGA
66 GCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTACTGAGTATGAGA
* * * * *
56572055 TTATTTCTTTGATAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTTGGAAACAAAAGGAC
131 CTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCGGAAACTAAAGGAC
* ** * * * *
56572120 CCTGGAAGCTTCATAATACTATGTAACATCAGAGAATCA-TACTCCGGTGAAACTTTGTATGACA
196 CCTGGAAGCTTTACGATACCATGTAACATCAGAGAAT-ATTACTGCGGTGAAGCTTTGTACGACA
* * *
56572184 TTTGAGCAAACATCAAATTGATGCCCAAATCTATTTTCAAACTATTGGGAATAAGTGAAGTAAGA
260 TTGGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGA
* ** * * *
56572249 CCCACTACTATGACACTTCAATTTG-AAAACTTTCGTTAGCATATCCTGAAGGAAAAGCTTCGTA
325 CCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGTA
56572313 GTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTG-
390 GTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGC
* * * *
56572377 AGAATTGGTTGCATTCCGAAGTGGTAAGATTTTGAAACCCATGGAGGTTGTGATTGAAAATGAGT
455 A-AATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGC
* * * * * * *
56572442 CTACTGAGACGCAGGAAAGTTAACCAAAAGCTGAAGTTCTTACACTAAAATAATAAGATGCTGAA
519 CTACTGAGAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAA
* * *
56572507 AAATATGATGAGGTAAACTCTAAACTAGTAAATTCTAAGAAGCTAACACATTTTTCAGATTTATT
584 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACT
*
56572572 TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGT
649 TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGC
*
56572637 AGAAACAAGAGGTGCAATTTAAG
714 AGAAACAAGAGGTACAATTTAAG
* *
56572660 AAGTTCTTGGATGTTCTAAAGCAACTCCACATCAACATCCCGTTGGTGGAGGCTTTAGAATAGAT
1 AAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGAT
* * *
56572725 GCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAGGAAGAAATGGGTTAATGAGTATGAGA
66 GCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTACTGAGTATGAGA
* * * **
56572790 CTATTGCTTTAACAAAAGAGTGCAGTATGTTCTTACAGAATAAGCTACCTCCAAAACTAAAGGAC
131 CTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCGGAAACTAAAGGAC
* * * * ** *
56572855 CCTGGAAGCGTTACGATACCATGTTACATCAGATAATATTATTATGGTGAAGCTTTGCACGACAT
196 CCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTACGACAT
* *
56572920 TTGAGCAAACATCAACTTGATGCCCAAATCTATTTT-AAATCTATTGGAAATAGGTGAAGTAAGA
261 TGGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAA-CTATTGGGAATAGGTGAAGTAAGA
* * * *
56572984 CCCACAATTGTGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTAAGGGAAAAGCTTCGTA
325 CCCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGTA
* * *
56573049 GTAAACCAAAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTTC
390 GTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGC
* * * * *
56573114 AATTTGGTTGTATTACGAAGTGGTAAGATTTTGAAACCTAAGGAGGTTGTAATTGAAAATGAGCC
455 AAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCC
* *
56573179 TACTGAGAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTATTCTAAAAAAATAAGATGGTGAAA
520 TACTGAGAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAAA
* *
56573244 AATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTTAGATTCACTT
585 AATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTT
* * *
56573309 CTTTAGAAATGTTGTCCATATGAACCTAGAGTTCCATATCCTCAAAATCTTCAATAGAATAAGCA
650 CTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGCA
*
56573374 GAAAGAAGAGGTACAATTTAAG
715 GAAACAAGAGGTACAATTTAAG
** * * *
56573396 AAG-TCTTGGATGTTCTAAAATAACTTTAGATCAACATCCTTTTGGTGGAGGCTTTAGAATAGAT
1 AAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGAT
* *
56573460 GCCCAACTACATGATGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTAGTGAGTATGAGA
66 GCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTACTGAGTATGAGA
* * *
56573525 CTATTGCTTTGACAAAGGAGTGCAGTGTGTTCTTACAGTACAAGCTACCTCTGAAACTAAA
131 CTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCGGAAACTAAA
56573586 TGATAGGAGG
Statistics
Matches: 4009, Mismatches: 481, Indels: 140
0.87 0.10 0.03
Matches are distributed among these distances:
694 356 0.09
695 9 0.00
696 6 0.00
697 3 0.00
698 224 0.06
699 2 0.00
700 1 0.00
701 3 0.00
707 3 0.00
709 2 0.00
710 1 0.00
717 1 0.00
719 1 0.00
720 2 0.00
722 3 0.00
728 3 0.00
729 1 0.00
730 3 0.00
731 217 0.05
732 3 0.00
733 222 0.06
734 542 0.14
735 1441 0.36
736 939 0.23
737 21 0.01
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (736 bp):
AAGTTCTTGGATGTTCTAAAGCAACTTCACATCAACATCCTGTTGGTGGAGGCTTTAGAATAGAT
GCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTACTGAGTATGAGA
CTATTGCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCGGAAACTAAAGGAC
CCTGGAAGCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTACGACAT
TGGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGAC
CCACTACTATGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGTAG
TAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGCA
AATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCT
ACTGAGAAGGAGGAAAGTCAGCCAAAAGTTGAAGTTCTTATACTAAAAAAATAAGATGCTGAAAA
ATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTC
TTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAG
AAACAAGAGGTACAATTTAAG
Found at i:56580661 original size:24 final size:23
Alignment explanation
Indices: 56580634--56580682 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
56580624 TTAAAACTAC
56580634 TTCTAAGGA-AAACTCAAGAGAGAA
1 TTCT-AGGAGAAACTCAA-AGAGAA
*
56580658 TTCTTGGAGAAACTCAAAGAGAA
1 TTCTAGGAGAAACTCAAAGAGAA
56580681 TT
1 TT
56580683 TTCACTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.22
Consensus pattern (23 bp):
TTCTAGGAGAAACTCAAAGAGAA
Found at i:56583706 original size:736 final size:735
Alignment explanation
Indices: 56582293--56584123 Score: 3096
Period size: 736 Copynumber: 2.5 Consensus size: 735
56582283 GGGTGTTACA
* *
56582293 ACCCACTACTGTGACACTTCAACTTGCAGATCATTCGTTAGCATATCCTGAGGGAACAGCTTCGT
1 ACCCACTACTGTGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGT
* *
56582358 AGTAGACCACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAAGAGTTAGGGTAAGAAGCATTG
66 AGTAGACCAAAAAGAGCTTTGATGAGCGATACAGAAAATCC-AAGAGTTTGGGTAAGAAGCATTG
* *
56582423 AGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAATGAGGATGTGATTGAAGATGAGC
130 AGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGC
* * *
56582488 CTACTGAGATGGAGGAAAGTCAACCAAAAGCTGAAGTTCTTAAACTGAAAAAATAAGATGCTGAA
195 CTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAA
*
56582553 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTTAGATTTACT
260 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACT
* * *
56582618 TCTTTAGAAAAGTTGTCCATATCAACCTAGAATTTCATATCCTCAAAATCCTCAACAGAATAAGC
325 TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCCTCAACAGAATAAGA
*
56582683 AGAAATAAGAGGTACAATTTAAGAAGTTCTTGCATGTTCTAAAGTAAATTCAAATCAACATCCCG
390 AGAAATAAGAGGTACAATTTAAGAAGTTCTTGCATGTTCTAAAGTAAATTCAAATCAACATCCCA
* * *
56582748 TTGGTGAAGGCTTTAGAATAGATGACCAACTACATGAAGTTTATGAAGGATATTTTTTCTAAGAA
455 TTGGTGAAGGCTTTAGAATAAATGACCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAA
* * *
56582813 GAAATGGCTTAATGAGTATGAGACTATTGCTTTGACAAAAGAGTGTTGTGTGTTCTTACAGAACA
520 GAAATGGCTTAATGAGTATGAGACTATTGCTTTCACAAAAGACTGTTATGTGTTCTTACAGAACA
* * * *
56582878 AGCTACCTTGGAAACTAAAAGACCTTGGAAGCTTTACGATACCATGTAACATCAGAGAATCTTAA
585 AGCTACCCTGGAAACTAAAAGACCCTGGAAGCTTTACGATACCATGTAACATCAAAGAATATTAA
56582943 TGCGGTGAAGCTTTGTACAACATTTGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACT
650 TGCGGTGAAGCTTTGTACAACATTTGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACT
56583008 ATTGGGAATAGGTGAAGTAAG
715 ATTGGGAATAGGTGAAGTAAG
* *
56583029 ACTCACTACTGTGACACTTCAACTTGCGGATCATTCGTTAACATATCCTGAGGGAAAAGCTTCGT
1 ACCCACTACTGTGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGT
**
56583094 AGTAGACCATGAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTG
66 AGTAGACCAAAAAGAGCTTTGATGAGCGATACAGAAAATCCAA-GAGTTTGGGTAAGAAGCATTG
56583159 AGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGC
130 AGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGC
56583224 CTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAA
195 CTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAA
* * *
56583289 AAATATGATGAGGTACACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAAATTTATT
260 AAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACT
*
56583354 TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCTTCAACAGAATAAGA
325 TCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCCTCAACAGAATAAGA
* *
56583419 AGAAATAAGAGGTACAATTTAAGAAGTTCTTGGC-TGTTCTAAAGTAACTTCATATCAACATCCC
390 AGAAATAAGAGGTACAATTTAAGAAGTTCTT-GCATGTTCTAAAGTAAATTCAAATCAACATCCC
* *
56583483 ATTGGTGGAGGCTTTAGAATAAATGCCCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGA
454 ATTGGTGAAGGCTTTAGAATAAATGACCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGA
*
56583548 AGAAATGGCTTAGTGAGTATGAGACTATTGCTTTCACAAAAGACTGTTATGTGTTCTTACAGAAC
519 AGAAATGGCTTAATGAGTATGAGACTATTGCTTTCACAAAAGACTGTTATGTGTTCTTACAGAAC
* * *
56583613 AAGGTACCCTGGAAACTAAAGGACCCTGGAAGCTTTATGATACCATGTAACATCAAAGAATATTA
584 AAGCTACCCTGGAAACTAAAAGACCCTGGAAGCTTTACGATACCATGTAACATCAAAGAATATTA
* ** *
56583678 CTGCGGTGAAGCTTTGTATGACATTTGAGCAAGCATCAACTTGATGCCCAAATCTATTTTCAAAC
649 ATGCGGTGAAGCTTTGTACAACATTTGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAAC
56583743 TATTGGGAATAGGTGAAGTAAG
714 TATTGGGAATAGGTGAAGTAAG
*
56583765 ACCCACTACTGTGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTTGT
1 ACCCACTACTGTGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGT
* * * * *
56583830 AGTA-AACAACAATGAGCTTTGATGAGCGATACAAAAAAATCC--GAGTTTAGGTAAGAAGCTTT
66 AGTAGACCAA-AAAGAGCTTTGATGAGCGATAC-AGAAAATCCAAGAGTTTGGGTAAGAAGCATT
*
56583892 GCA-AATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCGAAGGAGGTTGTGATTGAAGATGA
129 G-AGAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGA
*
56583956 GCCTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATATTGAAAAAATAAGATGCTG
193 GCCTACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTG
56584021 AAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTA
258 AAAAATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTA
*
56584086 CTTCTTTAGAAAAGTTGTCCACATCAACCTAGAGTTCC
323 CTTCTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCC
56584124 TATAACAGCC
Statistics
Matches: 1031, Mismatches: 59, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
734 242 0.23
735 6 0.01
736 773 0.75
737 10 0.01
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (735 bp):
ACCCACTACTGTGACACTTCAACTTGCGGATCATTCGTTAGCATATCCTGAGGGAAAAGCTTCGT
AGTAGACCAAAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGAGTTTGGGTAAGAAGCATTGA
GAATTGGTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCC
TACTGAGAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAAA
AATATGATGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTT
CTTTAGAAAAGTTGTCCATATCAACCTAGAGTTCCATATCCTCAAAATCCTCAACAGAATAAGAA
GAAATAAGAGGTACAATTTAAGAAGTTCTTGCATGTTCTAAAGTAAATTCAAATCAACATCCCAT
TGGTGAAGGCTTTAGAATAAATGACCAACTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAG
AAATGGCTTAATGAGTATGAGACTATTGCTTTCACAAAAGACTGTTATGTGTTCTTACAGAACAA
GCTACCCTGGAAACTAAAAGACCCTGGAAGCTTTACGATACCATGTAACATCAAAGAATATTAAT
GCGGTGAAGCTTTGTACAACATTTGAGCAAACATCAACTTGATGCCCAAATCTATTTTCAAACTA
TTGGGAATAGGTGAAGTAAG
Found at i:56585357 original size:43 final size:42
Alignment explanation
Indices: 56585292--56585489 Score: 190
Period size: 43 Copynumber: 4.7 Consensus size: 42
56585282 CATTGAATAA
*
56585292 AAAGGGGTTGCTAAGTGCTGATTCCACCGTATCTTTGATTGT
1 AAAGGGGTTGCTAAGTGCTGATTCCACCGTATCTCTGATTGT
* * * ***
56585334 GAAAGGGGTTGCTATGTGTTGATTCC-CCGTAT-TACTAAACAT
1 -AAAGGGGTTGCTAAGTGCTGATTCCACCGTATCT-CTGATTGT
* *
56585376 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTGACTGT
1 AAAGG-GGTTGCTAAGTGCTGATTCCACCGTATCTCTGATTGT
* *
56585419 GAAAGGGGTTGCTATGTGCTGATTCC-CCGTATCACTGAATT-T
1 -AAAGGGGTTGCTAAGTGCTGATTCCACCGTATCTCTG-ATTGT
* *
56585461 -AAGGTGGTTGCTAAGTGTTGAATCCACCG
1 AAAGG-GGTTGCTAAGTGCTGATTCCACCG
56585490 AGTAACGGAT
Statistics
Matches: 126, Mismatches: 21, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
40 4 0.03
41 23 0.18
42 40 0.32
43 53 0.42
44 6 0.05
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
AAAGGGGTTGCTAAGTGCTGATTCCACCGTATCTCTGATTGT
Found at i:56585442 original size:85 final size:84
Alignment explanation
Indices: 56585292--56585489 Score: 308
Period size: 85 Copynumber: 2.4 Consensus size: 84
56585282 CATTGAATAA
* *
56585292 AAAGG-GGTTGCTAAGTGCTGATTCCACCGTATCTTTGATTGTGAAAGGGGTTGCTATGTGTTGA
1 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTGACTGTGAAAGGGGTTGCTATGTGCTGA
*
56585356 TTCCCCGTATTACTAAACAT
66 TTCCCCGTATCACTAAA-AT
56585376 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTGACTGTGAAAGGGGTTGCTATGTGCTGA
1 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTGACTGTGAAAGGGGTTGCTATGTGCTGA
* *
56585441 TTCCCCGTATCACTGAATT
66 TTCCCCGTATCACTAAAAT
* * *
56585460 TAAGGTGGTTGCTAAGTGTTGAATCCACCG
1 AAAGGTGGTTGCTAAGTGCTGATTCCACCG
56585490 AGTAACGGAT
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
84 33 0.31
85 72 0.69
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (84 bp):
AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTGACTGTGAAAGGGGTTGCTATGTGCTGA
TTCCCCGTATCACTAAAAT
Found at i:56591702 original size:11 final size:13
Alignment explanation
Indices: 56591686--56591718 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
56591676 ATTTTACGGA
56591686 AAAATTTCG-T-G
1 AAAATTTCGTTCG
56591697 AAAATTTCGTTCG
1 AAAATTTCGTTCG
56591710 AAAATTTCG
1 AAAATTTCG
56591719 ACGTTTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 1 0.05
13 10 0.50
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (13 bp):
AAAATTTCGTTCG
Found at i:56592841 original size:42 final size:41
Alignment explanation
Indices: 56592776--56593016 Score: 177
Period size: 42 Copynumber: 5.7 Consensus size: 41
56592766 ACCGGAAAAC
** *
56592776 ATTGAATAAAAAGGGGTTGCTAAGTGCTGATTCCCCGAATT
1 ATTGAATTTAAAGGGGTTGCTAAGTGCTGATTCCCCGTATT
*
56592817 ATTGACTTTAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCT
1 ATTGAATTTAAAGG-GGTTGCTAAGTGCTGATTCC-CCGTAT-T
* *
56592861 -TTG-ATTGTGAAAGGGGTTGCTATGTGTTGATTCCCCGTATT
1 ATTGAATT-T-AAAGGGGTTGCTAAGTGCTGATTCCCCGTATT
* * * * * *
56592902 ACTGAATATAAAGTTGGTTGGTCAGTGCTAATTCCACCGTATCT
1 ATTGAATTTAAAG-GGGTTGCTAAGTGCTGATTCC-CCGTAT-T
* * * * * *
56592946 -TTGACTGTGAAAGGGGTTGTTATA-TGCTAATTCCCCATATC
1 ATTGAAT-TTAAAGGGGTTGCTA-AGTGCTGATTCCCCGTATT
*
56592987 ACTGAATTT-AAGGTGGTTGCTAAGTGCTGA
1 ATTGAATTTAAAGG-GGTTGCTAAGTGCTGA
56593017 ATCCACCAAG
Statistics
Matches: 156, Mismatches: 29, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
40 5 0.03
41 29 0.19
42 55 0.35
43 55 0.35
44 12 0.08
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.35
Consensus pattern (41 bp):
ATTGAATTTAAAGGGGTTGCTAAGTGCTGATTCCCCGTATT
Found at i:56592893 original size:43 final size:41
Alignment explanation
Indices: 56592785--56593016 Score: 170
Period size: 43 Copynumber: 5.5 Consensus size: 41
56592775 CATTGAATAA
*
56592785 AAAGGGGTTGCTAAGTGCTGATTCCCCGAATTATTGACTT-T
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGA-TTGT
56592826 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCT-TTGATTGT
1 AAAGG-GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGATTGT
* * * * *
56592869 GAAAGGGGTTGCTATGTGTTGATTCCCCGTATTACTGAATAT
1 -AAAGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGT
* * * * *
56592911 AAAGTTGGTTGGTCAGTGCTAATTCCACCGTATCT-TTGACTGT
1 AAAG-GGGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGATTGT
* * * * *
56592954 GAAAGGGGTTGTTATA-TGCTAATTCCCCATATCACTGAATT-T
1 -AAAGGGGTTGCTA-AGTGCTGATTCCCCGTATTATTG-ATTGT
56592996 -AAGGTGGTTGCTAAGTGCTGA
1 AAAGG-GGTTGCTAAGTGCTGA
56593017 ATCCACCAAG
Statistics
Matches: 152, Mismatches: 24, Indels: 30
0.74 0.12 0.15
Matches are distributed among these distances:
40 5 0.03
41 22 0.14
42 56 0.37
43 57 0.38
44 12 0.08
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (41 bp):
AAAGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGT
Found at i:56592929 original size:85 final size:84
Alignment explanation
Indices: 56592785--56593023 Score: 307
Period size: 85 Copynumber: 2.8 Consensus size: 84
56592775 CATTGAATAA
* * * *
56592785 AAAGGGGTTGCTAAGTGCTGATTCCCCGAATTATTGACTTTAAAGGTGGTTGCTAAGTGCTGATT
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGA-ATTAAAGGTGGTTGCTAAGTGCTGATT
*
56592850 CCACCGTATCTTTGATTGTG
65 CCACCGTATCTTTGACTGTG
* * * * *
56592870 AAAGGGGTTGCTATGTGTTGATTCCCCGTATTACTGAATATAAAGTTGGTTGGTCAGTGCTAATT
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATT
56592935 CCACCGTATCTTTGACTGTG
65 CCACCGTATCTTTGACTGTG
* * * * * * *
56592955 AAAGGGGTTGTTATATGCTAATTCCCCATATCACTGAATTTAAGGTGGTTGCTAAGTGCTGAATC
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGCTGATTC
56593020 CACC
66 CACC
56593024 AAGTAACGGA
Statistics
Matches: 131, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
84 25 0.19
85 106 0.81
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (84 bp):
AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGCTGATTC
CACCGTATCTTTGACTGTG
Found at i:56597652 original size:735 final size:736
Alignment explanation
Indices: 56594357--56597703 Score: 4891
Period size: 734 Copynumber: 4.5 Consensus size: 736
56594347 GGGGTGTTAC
56594357 AGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCT
1 AGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCT
* * * *
56594422 TGGCTGTTCTAAAGCAACTTCACATCAACTTCCTGTTGGTGGAGGCTTTAGAATAGATGCCCAAG
66 TGGATGTTCTAAAGCAACTTCACATCAACATCCTATTGGTGGAGGCTTTAGAATAGATGCCCAAC
* * * *
56594487 TCCATGAAGTTTATGAAGGATATTTTTTCCAAGAAGAAATGGCTTAATAAGTATGAGACTATTGC
131 TACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTAGTGAGTATGAGACTATTGC
** * *
56594552 TTTGACAAAAGAGTGTTGTGTGTTCTTACAGAACAAACTACCT-TGGAAACTAAAGGACCTTGGA
196 TTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCT-GAAACTAAAGGACCCTGGA
* * * * *
56594616 AGCTTCACGATACCATGTAACATCTGAGAATTTTACTGCAGTGAAGCTTTGTATGACATTTGAGC
260 AGCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTATGACATTGGAGC
* * * * * *
56594681 AAACAACAACTTGATGCCCAAATATATTTTCAAACTATTGGGAATAAGTGAAGTAAGAACAACTA
325 AAGCATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTA
* * * *
56594746 CTGTGACACTTCAACTTGCGGATCTTTCGTTAGCATATCCTGAAGGAAGAGTTTTGTAGTAGACC
390 CTGTGACACTTCAACTTGCGGATCTTTCGTTAGCATATCCTGAGGGAAAAGCTTCGTAGTAGACC
* * * *
56594811 ACAAAAAGCTTTCATGAGCGATACAGAAAATCCAAGGTGTTTGGGTAAGAAGCATTGAT-ACTTG
455 ACAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTG-TGAATTG
* *
56594875 GTTGCATTACGATGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTTA
519 GTTGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGA
*
56594940 GAAGGAGGAAAGTCAAACAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAAAAATATG
584 GAAGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAAAAATATG
56595005 ATAAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAG
649 ATAAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAG
56595070 AAAAGTTGTCCATATCAACCTAG
714 AAAAGTTGTCCATATCAACCTAG
* * * *
56595093 AGTTCCATTTTCTCAAAATCCTCAACAGAATAAGCAGAAACAAGAGGTACAATTT--TAAGTTCT
1 AGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCT
* * * * * * *
56595156 TGTATGTTCTAAAGTAACTCCAGACCAACATCCTTTTGGTGGAGGCTTTAGAATAGATACCCAAC
66 TGGATGTTCTAAAGCAACTTCACATCAACATCCTATTGGTGGAGGCTTTAGAATAGATGCCCAAC
* * *
56595221 TACATGTAGTTTATGAAGGATATTTTGTCCAAGAAGAAATAGCTTAGTGAGTATGGGACTATTGC
131 TACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTAGTGAGTATGAGACTATTGC
* * *
56595286 TTTGACAAAGGAGTGCA--GTGTTCTTACAGAACAAGCTACTTCTGAAACTAAAGGACGCTGGAA
196 TTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCTGAAACTAAAGGACCCTGGAA
* * *
56595349 GCTTTACGATACCATGTAACATCAAAGAATATTACAGCAGTGAAGCTTTGTATGACATTGGAGCA
261 GCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTATGACATTGGAGCA
* *
56595414 AGCACCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTAT
326 AGCATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTAC
* * * * *
56595479 TGTG-CACTTCAACTTGCGAATCATTCGTTAGCATATCTTGAGGGAAAAGCTTCGTAGTAAAACA
391 TGTGACACTTCAACTTGCGGATCTTTCGTTAGCATATCCTGAGGGAAAAGCTTCGTAGTAGACCA
* * * *
56595543 CAAACAGCTTTGATGAGCGATACAGAAAATGCAAGGTGTTTGGATAAGAAGCATTGTGAATTGGT
456 CAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGTGAATTGGT
*
56595608 TACATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGAGA
521 TGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGAGA
* * * *
56595673 AGGAGGAAAGTCAACGAAAAGTAGAATTTCTTATACTGAAAAAATAAGATGCTGAAAAATGTGAT
586 AGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAAAAATATGAT
56595738 AAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAGAA
651 AAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAGAA
56595803 AAGTTGTCCATATCAACCTAGAGTTCCATAGTCTATATCAACCTAG
716 AA---G------T-----T---G-T-C-----C-ATATCAACCTAG
*
56595849 AGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTATAATTTAAGAAGTTCT
1 AGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCT
* * *
56595914 TGAATGTTCTAAAGCAACTTCACATCAACATCCCATTAGTGGAGGCTTTAGAATAGATGCCCAAC
66 TGGATGTTCTAAAGCAACTTCACATCAACATCCTATTGGTGGAGGCTTTAGAATAGATGCCCAAC
* *
56595979 TACATGAAGTTTATGAAGGATAGTTTGTCCAAGAAGAAATGGCTTAATGAGTAT-AGACTATTGC
131 TACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTAGTGAGTATGAGACTATTGC
* * *
56596043 TATGACAAAAGAGTGCAGTGTGTTCTTACTGAACAAGCTACCTCGGAAACTAAAGGACCCTGGAA
196 TTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCTGAAACTAAAGGACCCTGGAA
* * ** ** * *
56596108 GCTTTACGATACCATGTAACATCAAAGAATCTTACTATGGTGAAGCTTTGTACAACATTTGAGAA
261 GCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTATGACATTGGAGCA
* *
56596173 AACATCAACTTGATGCTCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGT-------ACTAC
326 AGCATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTAC
* *
56596231 TGTGACACTTTAACTTGCGGATCTTTCGTTAGCATATCTTGAGGGAAAAGCTTCGTAGTAGACCA
391 TGTGACACTTCAACTTGCGGATCTTTCGTTAGCATATCCTGAGGGAAAAGCTTCGTAGTAGACCA
* * **
56596296 AAAAGAGCTTTGCTGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGCAAATTGGT
456 CAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGTGAATTGGT
**
56596361 TGCATTTTGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGAGA
521 TGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGAGA
* * * * *
56596426 AGGAGGAATGTTAGCCAAAAGTTGAAGCTCTTATACTAAAAAAATAAGATGCTGAAAAATATGAT
586 AGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAAAAATATGAT
* *
56596491 GAA-GTAAACCCTAAACTAGTAAATTCTAATAAGCTAACACATTTTTCAGATTTACTTCTTTAGA
651 -AAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAGA
* *
56596555 AAAGTTGTCCATGTCAATCTAG
715 AAAGTTGTCCATATCAACCTAG
* * *
56596577 AGCTCCATATCCTCAAAATCTTGAACAGAATAAGTAGAAACAAGAGGTACAATTTAAGAAGTTCT
1 AGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCT
* * * *
56596642 TGGATGTTCTAAAGTAAC-TCAGATCAACATCCTTTTGGTGGAGGGTTTAGAATAGATGCCCAAC
66 TGGATGTTCTAAAGCAACTTCACATCAACATCCTATTGGTGGAGGCTTTAGAATAGATGCCCAAC
* *
56596706 TACATGAAGTTTATGAAGGATATTTTGTCCAAGAATAAATGACTTAGTGAGTATGAGACTATTGC
131 TACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTAGTGAGTATGAGACTATTGC
* *
56596771 TTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCCGAAACTAAAGGACCCTGAAA
196 TTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCTGAAACTAAAGGACCCTGGAA
*
56596836 GCTTTACAATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTATGACATTGGAGCA
261 GCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTATGACATTGGAGCA
* * *
56596901 CGCATCAAGTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTGC
326 AGCATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTAC
* * * *
56596966 TATGACATTTCAACTTGCGGATCTTTCGTTAGCATATCCTGAGGAAAAAGCTTTGTAGTAGACCA
391 TGTGACACTTCAACTTGCGGATCTTTCGTTAGCATATCCTGAGGGAAAAGCTTCGTAGTAGACCA
* * *
56597031 CAAAGAGCTTT-ATAAGCGATACAGAAAATCCAAAGAGTTTAGGTAAGAAGCATTGTGAATTGGT
456 CAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGTGAATTGGT
*
56597095 TGCATTACGAAGTGGTAAGATTTTGAAACCCAATGAGGTTGTGATTGAAGATGAGCCTACTGAGA
521 TGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGAGA
*
56597160 AGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAATATGCTGAAAAATATGAT
586 AGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAAAAATATGAT
* * * *
56597225 GAGGTAAACCCTAAACTAGTAAATTCTAATAAGCTAAC-TCTGTTTTCAGATTTACTTCTTTAAA
651 AAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCT-TTTTCAGATTTACTTCTTTAGA
*
56597289 AAAGTTGTCCATATCAACCTGG
715 AAAGTTGTCCATATCAACCTAG
* ** *
56597311 AGTTCCATATCCTCAAAATCCTCAACAGAATAAGCAGAAACAACTGGTACAATTTAAGAATTTCT
1 AGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCT
* *
56597376 TGGACGTTCTAAAGCAACTTCACATCAACAT-CTCATTGGTGGATGCTTTAGAATAGATGCCCAA
66 TGGATGTTCTAAAGCAACTTCACATCAACATCCT-ATTGGTGGAGGCTTTAGAATAGATGCCCAA
* *
56597440 CTACTTGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAAT-GCTTTAGTGACTATGAGACTATT
130 CTACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGC-TTAGTGAGTATGAGACTATT
** * *
56597504 GCTTTGACAAAAGAGTGCAGTCCGTTCTTACAGAACAAGCTACCTCTAAAACTAAAGGACCCTAG
194 GCTTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCTGAAACTAAAGGACCCTGG
* *
56597569 AAGCTTTACGATACCATGTAACATCAGAGAATCTTACTGCGGTGAAGCTTTGTACGACATTGGAG
259 AAGCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTATGACATTGGAG
* * * *
56597634 CATGTATCAAGTTGATGCCCAAATCTATTTTCAAACTGTTGGGAATAGGTGAAGTAAGACCCACT
324 CAAGCATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACT
56597699 ACTGT
389 ACTGT
56597704 AAAAGTTGAT
Statistics
Matches: 2342, Mismatches: 223, Indels: 93
0.88 0.08 0.03
Matches are distributed among these distances:
727 91 0.04
728 263 0.11
729 1 0.00
730 1 0.00
731 298 0.13
732 161 0.07
733 3 0.00
734 456 0.19
735 356 0.15
736 53 0.02
739 1 0.00
740 1 0.00
744 1 0.00
745 1 0.00
748 1 0.00
749 1 0.00
750 2 0.00
752 8 0.00
753 292 0.12
754 2 0.00
755 1 0.00
756 63 0.03
757 24 0.01
758 113 0.05
759 148 0.06
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (736 bp):
AGTTCCATATCCTCAAAATCTTCAACAGAATAAGCAGAAACAAGAGGTACAATTTAAGAAGTTCT
TGGATGTTCTAAAGCAACTTCACATCAACATCCTATTGGTGGAGGCTTTAGAATAGATGCCCAAC
TACATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGGCTTAGTGAGTATGAGACTATTGC
TTTGACAAAAGAGTGCAGTGTGTTCTTACAGAACAAGCTACCTCTGAAACTAAAGGACCCTGGAA
GCTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTATGACATTGGAGCA
AGCATCAACTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTAC
TGTGACACTTCAACTTGCGGATCTTTCGTTAGCATATCCTGAGGGAAAAGCTTCGTAGTAGACCA
CAAAGAGCTTTGATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGTGAATTGGT
TGCATTACGAAGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGAGA
AGGAGGAAAGTCAACCAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAAAAATATGAT
AAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAGAA
AAGTTGTCCATATCAACCTAG
Found at i:56601697 original size:13 final size:13
Alignment explanation
Indices: 56601671--56601708 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
56601661 TGTAAATGTC
*
56601671 TTAGC-AGCTGAG
1 TTAGCTAGCTAAG
56601683 TTAGCTAGCTAAG
1 TTAGCTAGCTAAG
56601696 TTAGACTAGCTAA
1 TTAG-CTAGCTAA
56601709 ATTCGGTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 5 0.22
13 10 0.43
14 8 0.35
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (13 bp):
TTAGCTAGCTAAG
Found at i:56608391 original size:30 final size:30
Alignment explanation
Indices: 56608352--56608429 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 30
56608342 TTCGAGTATT
* *
56608352 AAATTATGGAAAGGGATGGTGATAACCATC
1 AAATAATGGAAAGGGATGGTGACAACCATC
**
56608382 GAAA-AATGGAAAAAGATGGTGACAACCATC
1 -AAATAATGGAAAGGGATGGTGACAACCATC
* *
56608412 AAATCATGAAAAGGGATG
1 AAATAATGGAAAGGGATG
56608430 CTTTTGGCTA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
29 3 0.08
30 32 0.84
31 3 0.08
ACGTcount: A:0.46, C:0.10, G:0.26, T:0.18
Consensus pattern (30 bp):
AAATAATGGAAAGGGATGGTGACAACCATC
Found at i:56622634 original size:10 final size:10
Alignment explanation
Indices: 56622619--56622659 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
56622609 GTCGAAAATG
56622619 ATCAAAATTA
1 ATCAAAATTA
*
56622629 ATCAAAATTT
1 ATCAAAATTA
*
56622639 ATTAAAATTA
1 ATCAAAATTA
*
56622649 ATTAAAATTA
1 ATCAAAATTA
56622659 A
1 A
56622660 ATATGTTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (10 bp):
ATCAAAATTA
Found at i:56625370 original size:25 final size:25
Alignment explanation
Indices: 56625342--56625417 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
56625332 TCATTAGAGT
*
56625342 TACCAATTTATAGCTCGTAAGAGCA
1 TACCGATTTATAGCTCGTAAGAGCA
* *
56625367 TACCGATTTATAGCTCATGAGAGCA
1 TACCGATTTATAGCTCGTAAGAGCA
** * *
56625392 TATTGATTCATAGCTCGTATGAGCA
1 TACCGATTTATAGCTCGTAAGAGCA
56625417 T
1 T
56625418 CCATGTACAT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (25 bp):
TACCGATTTATAGCTCGTAAGAGCA
Found at i:56628709 original size:30 final size:30
Alignment explanation
Indices: 56628632--56628798 Score: 155
Period size: 30 Copynumber: 5.6 Consensus size: 30
56628622 TTCGAGTATC
56628632 AAATTATGAAAAGGGATGGTGACGACCATTGA
1 AAATTATGAAAAGGGATGGTGACGACCA-T-A
*
56628664 AAATT-GGAAAA-GGATGGTGACGACCATA
1 AAATTATGAAAAGGGATGGTGACGACCATA
* * * * *
56628692 AAATTATGAAATGGGATGCCT-TCGGCTAT-
1 AAATTATGAAAAGGGATG-GTGACGACCATA
* * * *
56628721 CAATCTATGAAAAGGGATGGCT-TCGGCTATA
1 AAAT-TATGAAAAGGGATGG-TGACGACCATA
*
56628752 AAATTATGAAAAGGGATGGTGACGACCATC
1 AAATTATGAAAAGGGATGGTGACGACCATA
56628782 AAATTATGAAAAGGGAT
1 AAATTATGAAAAGGGAT
56628799 AGCCTCAGCT
Statistics
Matches: 113, Mismatches: 15, Indels: 16
0.78 0.10 0.11
Matches are distributed among these distances:
28 6 0.05
29 9 0.08
30 84 0.74
31 9 0.08
32 5 0.04
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.23
Consensus pattern (30 bp):
AAATTATGAAAAGGGATGGTGACGACCATA
Found at i:56628715 original size:90 final size:91
Alignment explanation
Indices: 56628606--56628828 Score: 239
Period size: 90 Copynumber: 2.5 Consensus size: 91
56628596 ATCATCGATA
* *
56628606 TATGAAAATGGATTG-CTTCGAG-TATCAAATTATGAAAAGGGATGG-TGACGACCATTGAAAAT
1 TATGAAAAGGGATAGCCTTCGAGCTATC-AATTATGAAAAGGGATGGCT-ACGACCA-T-AAAAT
56628668 T-GGAAAA-GGATGGTGACGACCATAAAAT
62 TAGGAAAAGGGATGGTGACGACCATAAAAT
* * * * *
56628696 TATGAAATGGGAT-GCCTTCG-GCTATCAATCTATGAAAAGGGATGGCTTCGGCTATAAAATTAT
1 TATGAAAAGGGATAGCCTTCGAGCTATCAAT-TATGAAAAGGGATGGCTACGACCATAAAATTAG
*
56628759 GAAAAGGGATGGTGACGACCATCAAAT
65 GAAAAGGGATGGTGACGACCATAAAAT
**
56628786 TATGAAAAGGGATAGCC-TC-AGCTATCGAACCATGAAAAGGGAT
1 TATGAAAAGGGATAGCCTTCGAGCTATC-AATTATGAAAAGGGAT
56628829 AACTTCAGTT
Statistics
Matches: 114, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
88 6 0.05
89 11 0.10
90 91 0.80
91 6 0.05
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.24
Consensus pattern (91 bp):
TATGAAAAGGGATAGCCTTCGAGCTATCAATTATGAAAAGGGATGGCTACGACCATAAAATTAGG
AAAAGGGATGGTGACGACCATAAAAT
Found at i:56628783 original size:60 final size:59
Alignment explanation
Indices: 56628606--56628798 Score: 162
Period size: 60 Copynumber: 3.2 Consensus size: 59
56628596 ATCATCGATA
* * * *
56628606 TATGAAAATGGATTGCTTCGAG-TATCAAATTATGAAAAGGGATGGTGACGACCATTGAAAAT
1 TATGAAAAGGGATGGCTTCG-GCTATAAAATTATGAAAAGGGATGGTGACGACCA-T--CAAT
* * * * * * * * *
56628668 T-GGAAAA-GGATGG-TGACGACCATAAAATTATGAAATGGGATGCCT-TCGGCTATCAAT
1 TATGAAAAGGGATGGCT-TCGGCTATAAAATTATGAAAAGGGATG-GTGACGACCATCAAT
56628725 CTATGAAAAGGGATGGCTTCGGCTATAAAATTATGAAAAGGGATGGTGACGACCATCAAAT
1 -TATGAAAAGGGATGGCTTCGGCTATAAAATTATGAAAAGGGATGGTGACGACCATC-AAT
56628786 TATGAAAAGGGAT
1 TATGAAAAGGGAT
56628799 AGCCTCAGCT
Statistics
Matches: 101, Mismatches: 21, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
57 3 0.03
58 1 0.01
59 8 0.08
60 78 0.77
61 10 0.10
62 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.25
Consensus pattern (59 bp):
TATGAAAAGGGATGGCTTCGGCTATAAAATTATGAAAAGGGATGGTGACGACCATCAAT
Found at i:56628810 original size:60 final size:59
Alignment explanation
Indices: 56628606--56628828 Score: 152
Period size: 60 Copynumber: 3.7 Consensus size: 59
56628596 ATCATCGATA
* * *
56628606 TATGAAAATGGATTGCTTCGAG-TATCAAATTATGAAAAGGGATGGTGACGACCATTGAAAAT
1 TATGAAAAGGGA-TGCTTC-AGCTATAAAATTATGAAAAGGGATGGTGACGACCA-T-CAAAT
* * * * * * * * *
56628668 T-GGAAAA-GGATG-GTGACGACCATAAAATTATGAAATGGGATGCCT-TCGGCTATC-AAT
1 TATGAAAAGGGATGCTTCA-G-CTATAAAATTATGAAAAGGGATG-GTGACGACCATCAAAT
*
56628725 CTATGAAAAGGGATGGCTTCGGCTATAAAATTATGAAAAGGGATGGTGACGACCATCAAAT
1 -TATGAAAAGGGAT-GCTTCAGCTATAAAATTATGAAAAGGGATGGTGACGACCATCAAAT
* ** **
56628786 TATGAAAAGGGATAGCCTCAGCTATCGAACCATGAAAAGGGAT
1 TATGAAAAGGGAT-GCTTCAGCTATAAAATTATGAAAAGGGAT
56628829 AACTTCAGTT
Statistics
Matches: 122, Mismatches: 28, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
57 4 0.03
58 3 0.02
59 9 0.07
60 93 0.76
61 11 0.09
62 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.24
Consensus pattern (59 bp):
TATGAAAAGGGATGCTTCAGCTATAAAATTATGAAAAGGGATGGTGACGACCATCAAAT
Found at i:56628821 original size:30 final size:30
Alignment explanation
Indices: 56628787--56628858 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
56628777 CCATCAAATT
*
56628787 ATGAAAAGGGATAGCCTCAGCTATCGAACC
1 ATGAAAAGGGATAACCTCAGCTATCGAACC
* * **
56628817 ATGAAAAGGGATAACTTCAGTTATCGAATT
1 ATGAAAAGGGATAACCTCAGCTATCGAACC
*
56628847 ACGAAAAGGGAT
1 ATGAAAAGGGAT
56628859 GTGTCAACCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (30 bp):
ATGAAAAGGGATAACCTCAGCTATCGAACC
Found at i:56628847 original size:90 final size:90
Alignment explanation
Indices: 56628670--56628859 Score: 242
Period size: 90 Copynumber: 2.1 Consensus size: 90
56628660 TTGAAAATTG
* * *
56628670 GAAAA-GGATGGTGACGACCATAAAATTATGAAATGGGATGCCTTCGGCTATCAATCTATGAAAA
1 GAAAAGGGATGGTGACGACCATAAAATTATGAAAAGGGATGCCTTCAGCTATCAATCCATGAAAA
** * *
56628734 GGGATGGCTTCGGCTATAAAATTAT
66 GGGATAACTTCAGCTATAAAATTAC
*
56628759 GAAAAGGGATGGTGACGACCATCAAATTATGAAAAGGGATAGCC-TCAGCTATCGAA-CCATGAA
1 GAAAAGGGATGGTGACGACCATAAAATTATGAAAAGGGAT-GCCTTCAGCTATC-AATCCATGAA
* **
56628822 AAGGGATAACTTCAGTTATCGAATTAC
64 AAGGGATAACTTCAGCTATAAAATTAC
56628849 GAAAAGGGATG
1 GAAAAGGGATG
56628860 TGTCAACCAT
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
89 5 0.06
90 77 0.89
91 5 0.06
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (90 bp):
GAAAAGGGATGGTGACGACCATAAAATTATGAAAAGGGATGCCTTCAGCTATCAATCCATGAAAA
GGGATAACTTCAGCTATAAAATTAC
Found at i:56629993 original size:42 final size:42
Alignment explanation
Indices: 56629946--56630034 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 42
56629936 AACATAAGCA
* *** * *
56629946 TGTGGGGTTATT-TCGAAGGATACATTTCCTGGGACATGGGCG
1 TGTGGGATTATTGT-GAAGGATACACGACCTGGCACACGGGCG
*
56629988 TGTGGGATTATTGTGAAGGGTACACGACCTGGCACACGGGCG
1 TGTGGGATTATTGTGAAGGATACACGACCTGGCACACGGGCG
56630030 TGTGG
1 TGTGG
56630035 CTTAGCTGTG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 38 0.97
43 1 0.03
ACGTcount: A:0.19, C:0.16, G:0.38, T:0.27
Consensus pattern (42 bp):
TGTGGGATTATTGTGAAGGATACACGACCTGGCACACGGGCG
Found at i:56630966 original size:25 final size:25
Alignment explanation
Indices: 56630932--56630990 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
56630922 TGCTACTTGC
*
56630932 ATAGCATCTATCAACCACCACAAAA
1 ATAGAATCTATCAACCACCACAAAA
56630957 ATAGAATCTATCAACCACCACAAAA
1 ATAGAATCTATCAACCACCACAAAA
56630982 ATAGAATCT
1 ATAGAATCT
56630991 CTACCATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.49, C:0.27, G:0.05, T:0.19
Consensus pattern (25 bp):
ATAGAATCTATCAACCACCACAAAA
Found at i:56635090 original size:17 final size:16
Alignment explanation
Indices: 56635056--56635087 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
56635046 GAATCTATTT
56635056 TTTTTTTCAACTTCAA
1 TTTTTTTCAACTTCAA
56635072 TTTTTTTCAACTTCAA
1 TTTTTTTCAACTTCAA
56635088 ATTGTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTTTTTCAACTTCAA
Found at i:56635598 original size:19 final size:19
Alignment explanation
Indices: 56635571--56635614 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
56635561 GAACAAAGTA
56635571 TAAAATTCTCACACAAAAC
1 TAAAATTCTCACACAAAAC
*
56635590 TAAATTTCTCACACAAAAC
1 TAAAATTCTCACACAAAAC
56635609 TCAAAA
1 T-AAAA
56635615 ATATTCATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.52, C:0.25, G:0.00, T:0.23
Consensus pattern (19 bp):
TAAAATTCTCACACAAAAC
Found at i:56636306 original size:75 final size:75
Alignment explanation
Indices: 56636213--56636358 Score: 168
Period size: 75 Copynumber: 1.9 Consensus size: 75
56636203 TTATGAAAAC
** * * * * *
56636213 ACATAATGCAGGTCTTAAAGGATCCTA-ATGTATTAATGTAAAGCGTTAACTAAAGATGCATTCA
1 ACATAATGCACATCTTAAAAGAT-CTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTCA
*
56636277 ATAAACAAGAA
65 ACAAACAAGAA
* * * *
56636288 ACATAATGCACATTTTAAAAGATGTAGTTGTATTAATGCAAAACATTAAATAAAGATGCATTTAA
1 ACATAATGCACATCTTAAAAGATCTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTCAA
56636353 CAAACA
66 CAAACA
56636359 CTCATAAATT
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
74 2 0.03
75 56 0.97
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (75 bp):
ACATAATGCACATCTTAAAAGATCTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTCAA
CAAACAAGAA
Found at i:56636574 original size:75 final size:75
Alignment explanation
Indices: 56636476--56636637 Score: 184
Period size: 75 Copynumber: 2.2 Consensus size: 75
56636466 ATGACTTATG
* ** * * * * * *
56636476 AAAACACATAATACAGGTCTTAAAGGATCCTA-ATGTATTAATGTAAAGCGTTAACTAAAGATGC
1 AAAACACATAATGCACATTTTAAAAGAT-CTAGATGTATTAATGCAAAACATTAAATAAAGATGC
*
56636540 ATTCAATAAAC
65 ATTCAACAAAC
*
56636551 AAGAA-ACATAATGCACATTTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGC
1 AA-AACACATAATGCACATTTTAAAAGATCTAGATGTATTAATGCAAAACATTAAATAAAGATGC
*
56636615 ATTTAACAAAC
65 ATTCAACAAAC
56636626 AAAACACATAAT
1 AAAACACATAAT
56636638 TAAAAATTGA
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
74 4 0.06
75 66 0.92
76 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.12, T:0.26
Consensus pattern (75 bp):
AAAACACATAATGCACATTTTAAAAGATCTAGATGTATTAATGCAAAACATTAAATAAAGATGCA
TTCAACAAAC
Found at i:56636590 original size:268 final size:268
Alignment explanation
Indices: 56636106--56636626 Score: 1006
Period size: 268 Copynumber: 1.9 Consensus size: 268
56636096 TCATAAAAAC
*
56636106 AACATATTTAATAACACTCATGCACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
1 AACATATTTAATAACACTCATACACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
*
56636171 AAATTAACAAATGAGATGATTTAATGCATGACTTATGAAAACACATAATGCAGGTCTTAAAGGAT
66 AAATTAACAAATGAGATGATTTAATGCATGACTTATGAAAACACATAATACAGGTCTTAAAGGAT
56636236 CCTAATGTATTAATGTAAAGCGTTAACTAAAGATGCATTCAATAAACAAGAAACATAATGCACAT
131 CCTAATGTATTAATGTAAAGCGTTAACTAAAGATGCATTCAATAAACAAGAAACATAATGCACAT
*
56636301 TTTAAAAGATGTAGTTGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACACTCATAA
196 TTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACACTCATAA
56636366 ATTAAATG
261 ATTAAATG
56636374 AACATATTTAATAACACTCATACACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
1 AACATATTTAATAACACTCATACACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
*
56636439 AAATTAACGAATGAGATGATTTAATGCATGACTTATGAAAACACATAATACAGGTCTTAAAGGAT
66 AAATTAACAAATGAGATGATTTAATGCATGACTTATGAAAACACATAATACAGGTCTTAAAGGAT
56636504 CCTAATGTATTAATGTAAAGCGTTAACTAAAGATGCATTCAATAAACAAGAAACATAATGCACAT
131 CCTAATGTATTAATGTAAAGCGTTAACTAAAGATGCATTCAATAAACAAGAAACATAATGCACAT
56636569 TTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACA
196 TTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACA
56636627 AAACACATAA
Statistics
Matches: 249, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
268 249 1.00
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (268 bp):
AACATATTTAATAACACTCATACACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
AAATTAACAAATGAGATGATTTAATGCATGACTTATGAAAACACATAATACAGGTCTTAAAGGAT
CCTAATGTATTAATGTAAAGCGTTAACTAAAGATGCATTCAATAAACAAGAAACATAATGCACAT
TTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACACTCATAA
ATTAAATG
Found at i:56648618 original size:12 final size:12
Alignment explanation
Indices: 56648590--56648634 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
56648580 TACAGGCCCT
*
56648590 CACCTCTGGATA
1 CACCTCTGGATG
56648602 CACCTCTGGATG
1 CACCTCTGGATG
* * *
56648614 TACCTCCGGTTG
1 CACCTCTGGATG
56648626 CACCTCTGG
1 CACCTCTGG
56648635 CTGTAGGCAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.16, C:0.36, G:0.22, T:0.27
Consensus pattern (12 bp):
CACCTCTGGATG
Found at i:56651850 original size:33 final size:33
Alignment explanation
Indices: 56651808--56651872 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
56651798 ATCAGTATGG
56651808 TTATCACAGGGAGTCAACTTATGCAATTCAAAA
1 TTATCACAGGGAGTCAACTTATGCAATTCAAAA
56651841 TTATCACAGGGAGTCAACTTATGCAATTCAAA
1 TTATCACAGGGAGTCAACTTATGCAATTCAAA
56651873 TTAGGGTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (33 bp):
TTATCACAGGGAGTCAACTTATGCAATTCAAAA
Found at i:56652206 original size:2 final size:2
Alignment explanation
Indices: 56652199--56652229 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
56652189 TCCATTTTGA
*
56652199 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
56652230 CCTACCATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:56656678 original size:21 final size:20
Alignment explanation
Indices: 56656644--56656699 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
56656634 TATTTTTTCC
*
56656644 AAAAATA-TAGAAATTTAT-T
1 AAAAATATTAAAAATTT-TGT
*
56656663 AAAATTATTCAAAAATTTTGT
1 AAAAATATT-AAAAATTTTGT
56656684 AAAAATATTAAAAATT
1 AAAAATATTAAAAATT
56656700 ATACTTTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 6 0.19
20 9 0.29
21 16 0.52
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.38
Consensus pattern (20 bp):
AAAAATATTAAAAATTTTGT
Found at i:56657296 original size:80 final size:80
Alignment explanation
Indices: 56657205--56657365 Score: 313
Period size: 80 Copynumber: 2.0 Consensus size: 80
56657195 TACCTTCTCA
*
56657205 TACTCTCTCACGTGGCTTTTCGGCCCTTTATAAATGCAACTTGTTCATGTTAGGAACACATCTCT
1 TACTCTCTCACGTGGCTTTTCGGCCCTTTATAAATGCAACTTGTTCATGATAGGAACACATCTCT
56657270 ACAAATCACTTTCAC
66 ACAAATCACTTTCAC
56657285 TACTCTCTCACGTGGCTTTTCGGCCCTTTATAAATGCAACTTGTTCATGATAGGAACACATCTCT
1 TACTCTCTCACGTGGCTTTTCGGCCCTTTATAAATGCAACTTGTTCATGATAGGAACACATCTCT
56657350 ACAAATCACTTTCAC
66 ACAAATCACTTTCAC
56657365 T
1 T
56657366 TATGAGCATA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.35
Consensus pattern (80 bp):
TACTCTCTCACGTGGCTTTTCGGCCCTTTATAAATGCAACTTGTTCATGATAGGAACACATCTCT
ACAAATCACTTTCAC
Found at i:56662662 original size:20 final size:19
Alignment explanation
Indices: 56662633--56662694 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
56662623 TAAATGCAAA
56662633 CTAAAATGAGCTGAATGAG
1 CTAAAATGAGCTGAATGAG
*
56662652 CTAAGAATGAGCTCG-TTGAG
1 CTAA-AATGAGCT-GAATGAG
*
56662672 CTAAAAATTGAGCTGAGTGAG
1 CT-AAAA-TGAGCTGAATGAG
56662693 CT
1 CT
56662695 TGAAGTAGAG
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
19 4 0.11
20 17 0.47
21 15 0.42
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.24
Consensus pattern (19 bp):
CTAAAATGAGCTGAATGAG
Found at i:56666736 original size:26 final size:27
Alignment explanation
Indices: 56666696--56666763 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
56666686 TTACCCAAAC
*
56666696 AAAATTTTGACGA-TTTTACCCTTGGT
1 AAAATTTTAACGATTTTTACCCTTGGT
* *
56666722 AAAATTTTAATGATTTTTTCCCTTGGT
1 AAAATTTTAACGATTTTTACCCTTGGT
56666749 AAAATTTTAAC-ATTT
1 AAAATTTTAACGATTT
56666764 ATATATATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 15 0.41
27 22 0.59
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (27 bp):
AAAATTTTAACGATTTTTACCCTTGGT
Found at i:56666924 original size:6 final size:6
Alignment explanation
Indices: 56666908--56666944 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
56666898 TGCAAATGGA
* *
56666908 TCATTT CCATTT TCATTT TCATTT CCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
56666945 TGGAAACCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (6 bp):
TCATTT
Found at i:56666931 original size:18 final size:18
Alignment explanation
Indices: 56666908--56666944 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
56666898 TGCAAATGGA
56666908 TCATTTCCATTTTCATTT
1 TCATTTCCATTTTCATTT
56666926 TCATTTCCATTTTCATTT
1 TCATTTCCATTTTCATTT
56666944 T
1 T
56666945 TGGAAACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (18 bp):
TCATTTCCATTTTCATTT
Found at i:56668005 original size:44 final size:43
Alignment explanation
Indices: 56667957--56668084 Score: 139
Period size: 44 Copynumber: 2.9 Consensus size: 43
56667947 AAAGAAAACG
*
56667957 AAATAAAATAATATATACAACAATTTAAAATAAATAATAGTTTA
1 AAAT-AAATAATATATAAAACAATTTAAAATAAATAATAGTTTA
* * * *
56668001 AAATAAATAATTTATAAAAACAATTCAAAATAAATAAAAAAGTTTC
1 AAATAAATAATATAT-AAAACAATTTAAAATAAAT--AATAGTTTA
* * * *
56668047 AAATAAACAATATATAAAAAAACTTAAAATAAACAATA
1 AAATAAATAATATATAAAACAATTTAAAATAAATAATA
56668085 ATAAAATAGT
Statistics
Matches: 69, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
43 13 0.19
44 21 0.30
45 15 0.22
46 20 0.29
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (43 bp):
AAATAAATAATATATAAAACAATTTAAAATAAATAATAGTTTA
Found at i:56668020 original size:17 final size:16
Alignment explanation
Indices: 56667979--56668011 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
56667969 ATATACAACA
56667979 ATTTAAAATAAATAAT
1 ATTTAAAATAAATAAT
56667995 AGTTTAAAATAAATAAT
1 A-TTTAAAATAAATAAT
56668012 TTATAAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 1 0.06
17 15 0.94
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTTAAAATAAATAAT
Found at i:56668065 original size:26 final size:25
Alignment explanation
Indices: 56668033--56668118 Score: 109
Period size: 26 Copynumber: 3.4 Consensus size: 25
56668023 ATTCAAAATA
*
56668033 AATAAAAAAGTTTCAAATAAACAAT
1 AATAAAAAAGTTTAAAATAAACAAT
**
56668058 ATATAAAAAAACTTAAAATAAACAAT
1 A-ATAAAAAAGTTTAAAATAAACAAT
* *
56668084 AATAAAATAGTTTAAAATAAATAAT
1 AATAAAAAAGTTTAAAATAAACAAT
56668109 AATTAAAAAA
1 AA-TAAAAAA
56668119 TGACATATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
25 23 0.45
26 28 0.55
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (25 bp):
AATAAAAAAGTTTAAAATAAACAAT
Found at i:56668088 original size:25 final size:25
Alignment explanation
Indices: 56668033--56668119 Score: 102
Period size: 25 Copynumber: 3.4 Consensus size: 25
56668023 ATTCAAAATA
* *
56668033 AATAAAAAAGTTTCAAATAAACAAT
1 AATAAAAAAATTTAAAATAAACAAT
*
56668058 ATATAAAAAAACTTAAAATAAACAAT
1 A-ATAAAAAAATTTAAAATAAACAAT
* * *
56668084 AATAAAATAGTTTAAAATAAATAAT
1 AATAAAAAAATTTAAAATAAACAAT
*
56668109 AATTAAAAAAT
1 AATAAAAAAAT
56668120 GACATATAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
25 29 0.57
26 22 0.43
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (25 bp):
AATAAAAAAATTTAAAATAAACAAT
Found at i:56668102 original size:51 final size:46
Alignment explanation
Indices: 56667957--56668275 Score: 193
Period size: 50 Copynumber: 6.8 Consensus size: 46
56667947 AAAGAAAACG
* * *
56667957 AAATAAAATAATATATACAACAATTTAAAATAAAT---AATAGTTTA
1 AAAT-AAATAATATATAAAAAAATTCAAAATAAATAAAAATAGTTTA
* *
56668001 AAATAAATAATTTATAAAAACAATTCAAAATAAATAAAAA-AGTTTC
1 AAATAAATAATATATAAAAA-AATTCAAAATAAATAAAAATAGTTTA
*
56668047 AAATAAACAATATATAAAAAAACTT-AAAATAAACAATAATAAAATAGTTTA
1 AAATAAATAATATATAAAAAAA-TTCAAAAT--A-AAT-A-AAAATAGTTTA
* * *
56668098 AAATAAATAATA-ATTAAAAAA-T-GACAT--AT-AAAATAGTTTTTA
1 AAATAAATAATATATAAAAAAATTCAAAATAAATAAAAATAG--TTTA
* * *
56668140 GAA-AAATAATATAT-AAAAATTTAAAAGATAACATATATATAATAGTTTA
1 AAATAAATAATATATAAAAAAATTCAAA-ATAA-ATA-A-A-AATAGTTTA
*
56668189 AAATAAATAATATATGAGAAAAAATT-AAAATAAATAATATGTAAAACAGTTTA
1 AAATAAATAATATAT-A-AAAAAATTCAAAAT--A-AATA---AAAATAGTTTA
*
56668242 AAATAAATAATATA-AAAAAACTT-AAAATAAATAA
1 AAATAAATAATATATAAAAAAATTCAAAATAAATAA
56668276 TAAAAGAGTT
Statistics
Matches: 222, Mismatches: 20, Indels: 66
0.72 0.06 0.21
Matches are distributed among these distances:
40 7 0.03
41 13 0.06
42 9 0.04
43 16 0.07
44 20 0.09
45 7 0.03
46 25 0.11
47 9 0.04
48 8 0.04
49 8 0.04
50 36 0.16
51 24 0.11
52 3 0.01
53 33 0.15
54 2 0.01
55 2 0.01
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (46 bp):
AAATAAATAATATATAAAAAAATTCAAAATAAATAAAAATAGTTTA
Found at i:56668217 original size:53 final size:49
Alignment explanation
Indices: 56668109--56668268 Score: 148
Period size: 49 Copynumber: 3.2 Consensus size: 49
56668099 AATAAATAAT
* *
56668109 AATTAAAAAATGACATATA-AAATAGTTTTTAGAA-AAATAATATATAAAA
1 AATTAAAAAATAACATATATAAATAG--TTTAAAATAAATAATATATAAAA
* *
56668158 ATTTAAAAGATAACATATATATAATAGTTTAAAATAAATAATATATGAGAAAA
1 AATTAAAAAATAACATATATA-AATAGTTTAAAATAAATAATATAT---AAAA
* * *
56668211 AATTAAAATAAATAATATGTA-AAACAGTTTAAAATAAATAATATA-AAAA
1 AATT-AAA-AAATAACATATATAAATAGTTTAAAATAAATAATATATAAAA
56668260 AACTTAAAA
1 AA-TTAAAA
56668269 TAAATAATAA
Statistics
Matches: 93, Mismatches: 9, Indels: 19
0.77 0.07 0.16
Matches are distributed among these distances:
48 1 0.01
49 31 0.33
50 14 0.15
51 5 0.05
53 29 0.31
54 4 0.04
55 9 0.10
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.30
Consensus pattern (49 bp):
AATTAAAAAATAACATATATAAATAGTTTAAAATAAATAATATATAAAA
Found at i:56668278 original size:27 final size:25
Alignment explanation
Indices: 56668143--56668277 Score: 116
Period size: 26 Copynumber: 5.3 Consensus size: 25
56668133 GTTTTTAGAA
*
56668143 AAATAATATAT-AAAAATTTAAAAGAT
1 AAATAATATATAAAAAAATT-AAA-AT
* **
56668169 AACAT-ATATAT-AATAGTTTAAAAT
1 AA-ATAATATATAAAAAAATTAAAAT
56668193 AAATAATATATGAGAAAAAATTAAAAT
1 AAATAATATAT-A-AAAAAATTAAAAT
* **
56668220 AAATAATATGTAAAACAGTTTAAAAT
1 AAATAATATATAAAA-AAATTAAAAT
*
56668246 AAATAATATA-AAAAAACTTAAAAT
1 AAATAATATATAAAAAAATTAAAAT
56668270 AAATAATA
1 AAATAATA
56668278 AAAGAGTTTT
Statistics
Matches: 92, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
23 2 0.02
24 26 0.28
25 10 0.11
26 32 0.35
27 22 0.24
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (25 bp):
AAATAATATATAAAAAAATTAAAAT
Found at i:56668857 original size:6 final size:6
Alignment explanation
Indices: 56668841--56668877 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
56668831 TGCAAATGGA
* *
56668841 TCATTT CCATTT TCATTT TCATTT CCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
56668878 TGGAAACCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (6 bp):
TCATTT
Found at i:56668864 original size:18 final size:18
Alignment explanation
Indices: 56668841--56668877 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
56668831 TGCAAATGGA
56668841 TCATTTCCATTTTCATTT
1 TCATTTCCATTTTCATTT
56668859 TCATTTCCATTTTCATTT
1 TCATTTCCATTTTCATTT
56668877 T
1 T
56668878 TGGAAACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (18 bp):
TCATTTCCATTTTCATTT
Found at i:56669938 original size:44 final size:43
Alignment explanation
Indices: 56669890--56670017 Score: 139
Period size: 44 Copynumber: 2.9 Consensus size: 43
56669880 AAAGAAAACG
*
56669890 AAATAAAATAATATATACAACAATTTAAAATAAATAATAGTTTA
1 AAAT-AAATAATATATAAAACAATTTAAAATAAATAATAGTTTA
* * * *
56669934 AAATAAATAATTTATAAAAACAATTCAAAATAAATAAAAAAGTTTC
1 AAATAAATAATATAT-AAAACAATTTAAAATAAAT--AATAGTTTA
* * * *
56669980 AAATAAACAATATATAAAAAAACTTAAAATAAACAATA
1 AAATAAATAATATATAAAACAATTTAAAATAAATAATA
56670018 ATAAAATAGT
Statistics
Matches: 69, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
43 13 0.19
44 21 0.30
45 15 0.22
46 20 0.29
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (43 bp):
AAATAAATAATATATAAAACAATTTAAAATAAATAATAGTTTA
Found at i:56669953 original size:17 final size:16
Alignment explanation
Indices: 56669912--56669944 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
56669902 ATATACAACA
56669912 ATTTAAAATAAATAAT
1 ATTTAAAATAAATAAT
56669928 AGTTTAAAATAAATAAT
1 A-TTTAAAATAAATAAT
56669945 TTATAAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 1 0.06
17 15 0.94
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTTAAAATAAATAAT
Found at i:56669998 original size:26 final size:25
Alignment explanation
Indices: 56669966--56670051 Score: 109
Period size: 26 Copynumber: 3.4 Consensus size: 25
56669956 ATTCAAAATA
*
56669966 AATAAAAAAGTTTCAAATAAACAAT
1 AATAAAAAAGTTTAAAATAAACAAT
**
56669991 ATATAAAAAAACTTAAAATAAACAAT
1 A-ATAAAAAAGTTTAAAATAAACAAT
* *
56670017 AATAAAATAGTTTAAAATAAATAAT
1 AATAAAAAAGTTTAAAATAAACAAT
56670042 AATTAAAAAA
1 AA-TAAAAAA
56670052 TGACATATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
25 23 0.45
26 28 0.55
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (25 bp):
AATAAAAAAGTTTAAAATAAACAAT
Found at i:56670021 original size:25 final size:25
Alignment explanation
Indices: 56669966--56670052 Score: 102
Period size: 25 Copynumber: 3.4 Consensus size: 25
56669956 ATTCAAAATA
* *
56669966 AATAAAAAAGTTTCAAATAAACAAT
1 AATAAAAAAATTTAAAATAAACAAT
*
56669991 ATATAAAAAAACTTAAAATAAACAAT
1 A-ATAAAAAAATTTAAAATAAACAAT
* * *
56670017 AATAAAATAGTTTAAAATAAATAAT
1 AATAAAAAAATTTAAAATAAACAAT
*
56670042 AATTAAAAAAT
1 AATAAAAAAAT
56670053 GACATATAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
25 29 0.57
26 22 0.43
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (25 bp):
AATAAAAAAATTTAAAATAAACAAT
Found at i:56670035 original size:51 final size:46
Alignment explanation
Indices: 56669890--56670205 Score: 182
Period size: 45 Copynumber: 6.9 Consensus size: 46
56669880 AAAGAAAACG
* * *
56669890 AAATAAAATAATATATACAACAATTTAAAATAAAT---AATAGTTTA
1 AAAT-AAATAATATATAAAAAAATTCAAAATAAATAAAAATAGTTTA
* *
56669934 AAATAAATAATTTATAAAAACAATTCAAAATAAATAAAAA-AGTTTC
1 AAATAAATAATATATAAAAA-AATTCAAAATAAATAAAAATAGTTTA
*
56669980 AAATAAACAATATATAAAAAAACTT-AAAATAAACAATAATAAAATAGTTTA
1 AAATAAATAATATATAAAAAAA-TTCAAAAT--A-AAT-A-AAAATAGTTTA
* * *
56670031 AAATAAATAATA-ATTAAAAAA-T-GACAT--AT-AAAATAGTTTTTA
1 AAATAAATAATATATAAAAAAATTCAAAATAAATAAAAATAG--TTTA
* * *
56670073 GAA-AAATAATATAT-AAAAATTTAAAAGATAACATATATATAATAGTTTA
1 AAATAAATAATATATAAAAAAATTCAAA-ATAA-ATA-A-A-AATAGTTTA
* * * * *
56670122 AAATAAATAATATATGAGAAAA---AAAATCATATGTAAAACAGTTTA
1 AAATAAATAATATATAAAAAAATTCAAAAT-AAAT-AAAAATAGTTTA
* *
56670167 AAATAAATAATATA-AAAAAACTT-AAAATAAATAATAATA
1 AAATAAATAATATATAAAAAAATTCAAAATAAATAAAAATA
56670206 AAAGAGTTTT
Statistics
Matches: 213, Mismatches: 29, Indels: 60
0.71 0.10 0.20
Matches are distributed among these distances:
40 7 0.03
41 13 0.06
42 9 0.04
43 16 0.08
44 27 0.13
45 32 0.15
46 31 0.15
47 10 0.05
48 11 0.05
49 8 0.04
50 24 0.11
51 25 0.12
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (46 bp):
AAATAAATAATATATAAAAAAATTCAAAATAAATAAAAATAGTTTA
Found at i:56670134 original size:26 final size:24
Alignment explanation
Indices: 56670076--56670208 Score: 80
Period size: 26 Copynumber: 5.6 Consensus size: 24
56670066 GTTTTTAGAA
56670076 AAATAATATATAAAAATTTAAAAG
1 AAATAATATATAAAAATTTAAAAG
* * * *
56670100 ATAACATATATATAATAGTTTAAAAT
1 A-AATA-ATATATAAAAATTTAAAAG
* *
56670126 AAATAATATAT-GAGA---AAAA-
1 AAATAATATATAAAAATTTAAAAG
* * *
56670145 AAATCATATGTAAAACAGTTTAAAAT
1 AAATAATATATAAAA-A-TTTAAAAG
* * *
56670171 AAATAATATAAAAAAACTTAAAAT
1 AAATAATATATAAAAATTTAAAAG
56670195 AAATAATA-ATAAAA
1 AAATAATATATAAAA
56670209 GAGTTTTTTT
Statistics
Matches: 82, Mismatches: 18, Indels: 19
0.69 0.15 0.16
Matches are distributed among these distances:
19 9 0.11
20 5 0.06
21 1 0.01
23 5 0.06
24 22 0.27
25 11 0.13
26 29 0.35
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.29
Consensus pattern (24 bp):
AAATAATATATAAAAATTTAAAAG
Found at i:56670180 original size:69 final size:69
Alignment explanation
Indices: 56670074--56670202 Score: 156
Period size: 69 Copynumber: 1.9 Consensus size: 69
56670064 TAGTTTTTAG
* * **
56670074 AAAAATAATATATAAAAATTTAAAAGATAACATATATATAATAGTTTAAAATAAATAATATATGA
1 AAAAATAATATATAAAAATTTAAAAGATAACATATATAAAAAAACTTAAAATAAATAATATATGA
56670139 GAAA
66 GAAA
* *
56670143 AAAAATCATATGTAAAACAGTTT-AAA-ATAA-ATAATATAAAAAAACTTAAAATAAATAATA
1 AAAAATAATATATAAAA-A-TTTAAAAGATAACAT-ATATAAAAAAACTTAAAATAAATAATA
56670203 ATAAAAGAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
68 2 0.04
69 42 0.82
70 4 0.08
71 3 0.06
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.29
Consensus pattern (69 bp):
AAAAATAATATATAAAAATTTAAAAGATAACATATATAAAAAAACTTAAAATAAATAATATATGA
GAAA
Found at i:56670182 original size:24 final size:25
Alignment explanation
Indices: 56670155--56670214 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
56670145 AAATCATATG
*
56670155 TAAAACAGTTTAAAATAAATAAT-A
1 TAAAAAAGTTTAAAATAAATAATAA
**
56670179 TAAAAAAACTTAAAATAAATAATAA
1 TAAAAAAGTTTAAAATAAATAATAA
*
56670204 TAAAAGAGTTT
1 TAAAAAAGTTT
56670215 TTTTAAATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 20 0.69
25 9 0.31
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.28
Consensus pattern (25 bp):
TAAAAAAGTTTAAAATAAATAATAA
Found at i:56671889 original size:44 final size:44
Alignment explanation
Indices: 56671841--56672684 Score: 381
Period size: 44 Copynumber: 18.7 Consensus size: 44
56671831 GCTTTTCTCC
*
56671841 GCTCCACTGCAACTTCAAGGAGATAGGATTAGTAGCTTCAATCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCT
* * * * *
56671885 GCTCCACTGCAACTTTAGGGAGATAAGATTGGTATCTTCAACCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCT
* * * * * * * *
56671929 GCCCCACTACAACTTTAGGAAGATAAGG-TTTGTGGCTTTAATAT
1 GCTCCACTGCAACTTCAGGGAGAT-AGGATTAGTAGCTTCAATCT
* * * * * *
56671973 GCTCCACTGCAACTTCAGGAAGAT-GAGATTTGTGGTTTTAATTT
1 GCTCCACTGCAACTTCAGGGAGATAG-GATTAGTAGCTTCAATCT
* *
56672017 GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCCTGTCTTCAATCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTAGTA----G-CTTCAATCT
* * * * * ** * *
56672066 GCTCTACTGCAACTTTAGGGAGAAAAGATTTGTTTATTTTTAACCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTAG--TAGCTTCAATCT
* * * * * **
56672112 GTTCCACTACAACTTCAGGGAGATAAGGTTTGTGTA-TTTTTATCCT
1 GCTCCACTGCAACTTCAGGGAGAT-AGGATT-AGTAGCTTCAAT-CT
* *
56672158 GCTCCTCTGCAACTTCAGGGAGATAAGGATT-GT-GTCTTCGATCT
1 GCTCCACTGCAACTTCAGGGAGAT-AGGATTAGTAG-CTTCAATCT
* * * * * * *
56672202 ACTCCAATGTAATTTCAGGGAGA-AGAGGTTTGTAGCTTCGATCT
1 GCTCCACTGCAACTTCAGGGAGATAG-GATTAGTAGCTTCAATCT
* * * * * * *
56672246 ACTCCGA-TGGAACTTCAAGGAGATAAGAATTGGTAACTTCAACCT
1 GCTCC-ACTGCAACTTCAGGGAGAT-AGGATTAGTAGCTTCAATCT
*
56672291 GCTCCACTGCAACTTCAGGGAGATAAGGTTTGCAACTTGTAGCTTCAATCT
1 GCTCCACTGCAACTTCAGGGAGAT-AGGATT---A---GTAGCTTCAATCT
* * * * * *
56672342 GTTCCACTGCAACTTCAGGGAAATAAGATTCGCT-GTCTTTAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTAG-TAG-CTTCAATCT
* * * * * * *
56672387 GCTCCGCTGCAATTTCAAGAAGATAAGACTT-GTAACTTCAACCT
1 GCTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAGCTTCAATCT
*
56672431 GCTCCACTGCAACTTCAGGGAGATAAGG-TT--T-GCTAT-GATCT
1 GCTCCACTGCAACTTCAGGGAGAT-AGGATTAGTAGCT-TCAATCT
* * * *
56672472 GCTCTACTGCAACTTTAGAGAGATAAGATCTGCAATTTA-TAGCTTCAATCC
1 GCTCCACTGCAACTTCAGGGAGAT-AG----G--A-TTAGTAGCTTCAATCT
* * * * * * *
56672523 GTTCCACTACAACTTCAGGGAAATAAGATTCACTATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATT-AGTAGCTTCAATCT
* * * * *
56672568 GCTCCACTGTAATTTCAGGGAGATAAGACTAGTAACTTCAATCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCT
* * * * *
56672612 GGC-CCACTACAACTT-AGGGGGATAAGATTAGTGGCTTTAATCT
1 -GCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCT
* * *
56672655 GCTCCACTACAACTTCAAGGAGATAAGATT
1 GCTCCACTGCAACTTCAGGGAGATAGGATT
56672685 CACCATAATG
Statistics
Matches: 617, Mismatches: 132, Indels: 102
0.73 0.16 0.12
Matches are distributed among these distances:
41 29 0.05
42 7 0.01
43 43 0.07
44 249 0.40
45 118 0.19
46 61 0.10
47 4 0.01
48 3 0.00
49 37 0.06
50 7 0.01
51 59 0.10
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCT
Found at i:56672237 original size:185 final size:181
Alignment explanation
Indices: 56671876--56672322 Score: 444
Period size: 185 Copynumber: 2.5 Consensus size: 181
56671866 GGATTAGTAG
*
56671876 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGGTATCTTCAACCTGCCCCACTACAA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGAAAAGATTGGTATCTTCAACCTGCCCCACTACAA
* * *
56671941 CTTTAGGAAGATAAGGTTTGTGGCTTTAATATGCTCCACTGCAACTTCAGGAAGATGAGATTTGT
66 CTTCAGGAAGATAAGGTTTGTGACTTTAATATGCTCCACTGCAACTTCAGGAAGATAAGATTTGT
* * * *
56672006 GGTTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCCTGT
131 GGTTTCAATCTACTCCAATGCAACTTCAGGGAGATAAGATTTGTAGCCTGT
* * * * **
56672057 CTTCAATCTGCTCTACTGCAACTTTAGGGAGAAAAGATTTGTTTATTTTTAACCTGTTCCACTAC
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGAAAAGA-TTG-GTATCTTCAACCTGCCCCACTAC
* * * * * *
56672122 AACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTCCTCTGCAACTTCAGGGAGATAAGGA
64 AACTTCAGGAAGATAAGGTTTGTG-ACTTTAAT-ATGCTCCACTGCAACTTCAGGAAGATAA-GA
* * * *
56672187 -TTGT-GTCTTCGATCTACTCCAATGTAATTTCAGGGAGA-AGAGGTTTGTA----G-
126 TTTGTGGT-TTCAATCTACTCCAATGCAACTTCAGGGAGATA-AGATTTGTAGCCTGT
* * * * * * * * *
56672237 CTTCGATCTACTCCGA-TGGAACTTCAAGGAGATAAGAATTGGTAACTTCAACCTGCTCCACTGC
1 CTTCAATCTGCTCC-ACTGCAACTTTAGGGAGAAAAG-ATTGGTATCTTCAACCTGCCCCACTAC
*
56672301 AACTTCAGGGAGATAAGGTTTG
64 AACTTCAGGAAGATAAGGTTTG
56672323 CAACTTGTAG
Statistics
Matches: 220, Mismatches: 37, Indels: 20
0.79 0.13 0.07
Matches are distributed among these distances:
179 39 0.18
180 30 0.14
181 38 0.17
182 3 0.01
183 40 0.18
184 8 0.04
185 60 0.27
186 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (181 bp):
CTTCAATCTGCTCCACTGCAACTTTAGGGAGAAAAGATTGGTATCTTCAACCTGCCCCACTACAA
CTTCAGGAAGATAAGGTTTGTGACTTTAATATGCTCCACTGCAACTTCAGGAAGATAAGATTTGT
GGTTTCAATCTACTCCAATGCAACTTCAGGGAGATAAGATTTGTAGCCTGT
Found at i:56672517 original size:181 final size:180
Alignment explanation
Indices: 56672289--56672683 Score: 506
Period size: 181 Copynumber: 2.2 Consensus size: 180
56672279 TAACTTCAAC
* * * * * *
56672289 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCAACTTGTAGCTTCAATCTGTTCCACTGCAA
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGCAACTTATAGCTTCAATCCGTTCCACTACAA
* * * * *
56672354 CTTCAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTCCGCTGCAATTTCAAGAAGATAAGACTTG
66 CTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGCAATTTCAAGAAGATAAGACTAG
*
56672419 TAACTTCAACCT-GCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTATGAT
131 TAACTTCAACCTGGC-CCACTACAACTT-AGGGAGATAAGGTTTGCTATGAT
* * *
56672470 CTGCTCTACTGCAACTTTAGAGAGATAAGATCTGCAATTTATAGCTTCAATCCGTTCCACTACAA
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGCAACTTATAGCTTCAATCCGTTCCACTACAA
* * *
56672535 CTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGTAATTTCAGGGAGATAAGACTAG
66 CTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGCAATTTCAAGAAGATAAGACTAG
* * * * *
56672600 TAACTTCAATCTGGCCCACTACAACTTAGGGGGATAAGATTAGTGGCTTTAAT
131 TAACTTCAACCTGGCCCACTACAACTTAGGGAGATAAGGTT--T-GCTATGAT
*
56672653 CTGCTCCACTACAACTTCA-AGGAGATAAGAT
1 CTGCTCCACTGCAACTTCAGA-GAGATAAGAT
56672684 TCACCATAAT
Statistics
Matches: 183, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
180 12 0.07
181 135 0.74
182 4 0.02
183 32 0.17
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (180 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGCAACTTATAGCTTCAATCCGTTCCACTACAA
CTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGCAATTTCAAGAAGATAAGACTAG
TAACTTCAACCTGGCCCACTACAACTTAGGGAGATAAGGTTTGCTATGAT
Found at i:56672623 original size:89 final size:89
Alignment explanation
Indices: 56672333--56672682 Score: 266
Period size: 89 Copynumber: 3.9 Consensus size: 89
56672323 CAACTTGTAG
** * * * *
56672333 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTCCGCTGCA
1 CTTCAATCTGGCCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCA
* * *
56672398 ATTTCAAGAAGATAAGACTTGTAA
66 ATTTCAGGGAGATAAGACTAGTAA
* * * * * * *
56672422 CTTCAACCT-GCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTA---TGA-TCTGCTCTACTGC
1 CTTCAATCTGGC-CCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGC
* *
56672482 AACTTT-AGAGAGATAAGATCTGCAATTTATA
65 AA-TTTCAGGGAGATAAGA-CT---A-GTA-A
* ** * *
56672513 GCTTCAATCCGTTCCACTACAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGT
1 -CTTCAATCTGGCCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGC
56672578 AATTTCAGGGAGATAAGACTAGTAA
65 AATTTCAGGGAGATAAGACTAGTAA
** * ** * * *
56672603 CTTCAATCTGGCCCACTACAACTT-AGGGGGATAAGATTAG-TGGCTTTAATCTGCTCCACTACA
1 CTTCAATCTGGCCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCA
* *
56672666 ACTTCAAGGAGATAAGA
66 ATTTCAGGGAGATAAGA
56672683 TTCACCATAA
Statistics
Matches: 202, Mismatches: 44, Indels: 32
0.73 0.16 0.12
Matches are distributed among these distances:
85 22 0.11
86 7 0.03
87 32 0.16
88 12 0.06
89 57 0.28
90 3 0.01
91 3 0.01
92 35 0.17
95 7 0.03
96 24 0.12
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (89 bp):
CTTCAATCTGGCCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCA
ATTTCAGGGAGATAAGACTAGTAA
Found at i:56672637 original size:43 final size:43
Alignment explanation
Indices: 56672514--56672682 Score: 142
Period size: 43 Copynumber: 3.8 Consensus size: 43
56672504 CAATTTATAG
* * * * * *
56672514 CTTCAATCCGTTCCACTACAACTTCAGGGAAATAAGATTCACTAT
1 CTTCAATCTGCTCCACTACAACTT-AGGGAGATAAGACT-AGTAA
* ** *
56672559 CTTCAGTCTGCTCCACTGTAATTTCAGGGAGATAAGACTAGTAA
1 CTTCAATCTGCTCCACTACAACTT-AGGGAGATAAGACTAGTAA
* * **
56672603 CTTCAATCTGGC-CCACTACAACTTAGGGGGATAAGATTAGTGG
1 CTTCAATCT-GCTCCACTACAACTTAGGGAGATAAGACTAGTAA
* *
56672646 CTTTAATCTGCTCCACTACAACTTCAAGGAGATAAGA
1 CTTCAATCTGCTCCACTACAACTT-AGGGAGATAAGA
56672683 TTCACCATAA
Statistics
Matches: 100, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
42 2 0.02
43 35 0.35
44 30 0.30
45 33 0.33
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (43 bp):
CTTCAATCTGCTCCACTACAACTTAGGGAGATAAGACTAGTAA
Found at i:56675634 original size:14 final size:14
Alignment explanation
Indices: 56675617--56675660 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
56675607 TATATACAAC
56675617 AATTTAAAATAAAT
1 AATTTAAAATAAAT
* *
56675631 AATTTATAA-AAAC
1 AATTTAAAATAAAT
*
56675644 AATTCAAAATAAAT
1 AATTTAAAATAAAT
56675658 AAT
1 AAT
56675661 AAAAAGTTTC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (14 bp):
AATTTAAAATAAAT
Found at i:56675652 original size:27 final size:26
Alignment explanation
Indices: 56675601--56675859 Score: 165
Period size: 25 Copynumber: 10.3 Consensus size: 26
56675591 AAACGAAACA
* *
56675601 AAATAATATATACAACAATTTAAAAT
1 AAATAATATATAAAACAATTCAAAAT
*
56675627 AAATAATTTATAAAAACAATTCAAAAT
1 AAATAATATAT-AAAACAATTCAAAAT
**
56675654 AAAT-A-ATA-AAAA-GTTTC-AAAT
1 AAATAATATATAAAACAATTCAAAAT
*
56675675 AAACAATATATAAAA-AACTT-AAAAT
1 AAATAATATATAAAACAA-TTCAAAAT
* * *
56675700 AAGTAATA-ATAAAACAGTTTTAAAA-
1 AAATAATATATAAAACA-ATTCAAAAT
* *
56675725 AAATAATATATAAAA-ATTTAAAAGAT
1 AAATAATATATAAAACAATTCAAA-AT
* * *
56675751 AACAT-ATATAT--AATAGTTTAAAAT
1 AA-ATAATATATAAAACAATTCAAAAT
*
56675775 AAATAATATATGAGAAAAAATT-AAAAT
1 AAATAATATAT-A-AAACAATTCAAAAT
* * *
56675802 AAATAATATGTAAAACAGTTTAAAAT
1 AAATAATATATAAAACAATTCAAAAT
56675828 AAATAATATA-AAAA-AACTT-AAAAT
1 AAATAATATATAAAACAA-TTCAAAAT
56675852 AAATAATA
1 AAATAATA
56675860 AAAGAGTTTT
Statistics
Matches: 189, Mismatches: 23, Indels: 44
0.74 0.09 0.17
Matches are distributed among these distances:
21 7 0.04
22 4 0.02
23 9 0.05
24 42 0.22
25 44 0.23
26 44 0.23
27 34 0.18
28 5 0.03
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.29
Consensus pattern (26 bp):
AAATAATATATAAAACAATTCAAAAT
Found at i:56675682 original size:24 final size:25
Alignment explanation
Indices: 56675601--56675859 Score: 207
Period size: 26 Copynumber: 10.3 Consensus size: 25
56675591 AAACGAAACA
56675601 AAATAATATATACAACAA-TTTAAAAT
1 AAATAATATATA-AA-AAGTTTAAAAT
* * *
56675627 AAATAATTTATAAAAACAATTCAAAAT
1 AAATAATATAT-AAAA-AGTTTAAAAT
*
56675654 --A-AATA-ATAAAAAGTTTCAAAT
1 AAATAATATATAAAAAGTTTAAAAT
* **
56675675 AAACAATATATAAAAAACTTAAAAT
1 AAATAATATATAAAAAGTTTAAAAT
*
56675700 AAGTAATA-ATAAAACAGTTTTAAAA-
1 AAATAATATATAAAA-AG-TTTAAAAT
56675725 AAATAATATATAAAAA-TTTAAAAGAT
1 AAATAATATATAAAAAGTTT-AAA-AT
*
56675751 AACAT-ATATAT-AATAGTTTAAAAT
1 AA-ATAATATATAAAAAGTTTAAAAT
**
56675775 AAATAATATATGAGAAAAAATTAAAAT
1 AAATAATATAT-A-AAAAGTTTAAAAT
*
56675802 AAATAATATGTAAAACAGTTTAAAAT
1 AAATAATATATAAAA-AGTTTAAAAT
**
56675828 AAATAATATA-AAAAAACTTAAAAT
1 AAATAATATATAAAAAGTTTAAAAT
56675852 AAATAATA
1 AAATAATA
56675860 AAAGAGTTTT
Statistics
Matches: 189, Mismatches: 24, Indels: 42
0.74 0.09 0.16
Matches are distributed among these distances:
21 7 0.04
22 4 0.02
23 8 0.04
24 42 0.22
25 44 0.23
26 54 0.29
27 30 0.16
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.29
Consensus pattern (25 bp):
AAATAATATATAAAAAGTTTAAAAT
Found at i:56675739 original size:50 final size:49
Alignment explanation
Indices: 56675602--56675868 Score: 246
Period size: 50 Copynumber: 5.4 Consensus size: 49
56675592 AACGAAACAA
* * *
56675602 AATAATATATACAACAATTTAAAATAAATAATTTATAAAAACAATTCAAAAT
1 AATAATA-ATAAAACAGTTTAAAATAAATAATATATAAAAA-AATT-AAAAT
* * *
56675654 -A-AATAATAAAA-AGTTTCAAATAAACAATATATAAAAAACTTAAAAT
1 AATAATAATAAAACAGTTTAAAATAAATAATATATAAAAAAATTAAAAT
*
56675700 AAGTAATAATAAAACAGTTTTAAAA-AAATAATATAT-AAAAATTTAAAAGAT
1 AA-TAATAATAAAACAG-TTTAAAATAAATAATATATAAAAAAATT-AAA-AT
* * *
56675751 AA-CATATATATAATAGTTTAAAATAAATAATATATGAGAAAAAATTAAAAT
1 AATAATA-ATAAAACAGTTTAAAATAAATAATATAT-A-AAAAAATTAAAAT
* *
56675802 AAATAATATGTAAAACAGTTTAAAATAAATAATATA-AAAAAACTTAAAAT
1 -AATAATA-ATAAAACAGTTTAAAATAAATAATATATAAAAAAATTAAAAT
*
56675852 -A-AATAATAAAAGAGTTT
1 AATAATAATAAAACAGTTT
56675869 TTTTAAATAA
Statistics
Matches: 181, Mismatches: 20, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
46 15 0.08
47 8 0.04
48 23 0.13
49 32 0.18
50 49 0.27
51 14 0.08
52 5 0.03
53 35 0.19
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (49 bp):
AATAATAATAAAACAGTTTAAAATAAATAATATATAAAAAAATTAAAAT
Found at i:56682335 original size:25 final size:25
Alignment explanation
Indices: 56682289--56682355 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 25
56682279 ATTTAGCTAC
56682289 TTATTTGTTATCTTTTTACTTTATTTA
1 TTATTT-TTAT-TTTTTACTTTATTTA
* *
56682316 -TATTTTATATTTTTTCCTTTCTTTA
1 TTATTTT-TATTTTTTACTTTATTTA
56682341 TTATTTTTATTTTTT
1 TTATTTTTATTTTTT
56682356 TATAAAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
25 22 0.61
26 14 0.39
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.75
Consensus pattern (25 bp):
TTATTTTTATTTTTTACTTTATTTA
Found at i:56684618 original size:34 final size:34
Alignment explanation
Indices: 56684575--56684649 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
56684565 CAATAAAATA
56684575 TTATCAAAATAAACAAAAATAATATCATATGAAC
1 TTATCAAAATAAACAAAAATAATATCATATGAAC
*
56684609 TTATCAAAATACACAAAAATAATATCATATGAAC
1 TTATCAAAATAAACAAAAATAATATCATATGAAC
56684643 TTATCAA
1 TTATCAA
56684650 GGCTAAACAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.56, C:0.13, G:0.03, T:0.28
Consensus pattern (34 bp):
TTATCAAAATAAACAAAAATAATATCATATGAAC
Found at i:56685811 original size:69 final size:69
Alignment explanation
Indices: 56685667--56685822 Score: 190
Period size: 69 Copynumber: 2.3 Consensus size: 69
56685657 GGCTATTATA
* * *
56685667 GTAATCCCTGTGTTTACTGTCCCAACAGACTCCATTAGTTGCTATTGTCGAGTTATGGACTTACA
1 GTAATCCCTGTGTTTACTGTCCCAACAGACTCCATTAGTTGCCATAGTCGAGCTATGGACTTACA
56685732 CATC
66 CATC
** * *
56685736 ACAATCCCTGTGTTTACTGTCCCGAA-AGACTCCATTGGTTGCCATAGTTGAGCTAT-GATCTTA
1 GTAATCCCTGTGTTTACTGTCCC-AACAGACTCCATTAGTTGCCATAGTCGAGCTATGGA-CTTA
*
56685799 CACTTC
64 CACATC
* *
56685805 GTAATCCTTATGTTTACT
1 GTAATCCCTGTGTTTACT
56685823 ATCCAGACGG
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
68 2 0.03
69 69 0.95
70 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (69 bp):
GTAATCCCTGTGTTTACTGTCCCAACAGACTCCATTAGTTGCCATAGTCGAGCTATGGACTTACA
CATC
Found at i:56690274 original size:43 final size:43
Alignment explanation
Indices: 56690165--56690293 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
56690155 AATTTGTACA
* * * * *
56690165 ATGCCAACGTCCCAGACGTGGTATTACATGTAATCACAGATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACAAATCG
* * * * *
56690208 ATGTC-GCTGTCCTAAACAGGGTCTTACACGTAAACACAAATCG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAACACAAATCG
* * *
56690251 ATGCCAACGTCCCAGATATGGTCTTACACATAAACACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACAAATCG
56690294 GAAATCCTAT
Statistics
Matches: 66, Mismatches: 18, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
42 1 0.02
43 64 0.97
44 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACAAATCG
Found at i:56694912 original size:43 final size:43
Alignment explanation
Indices: 56694859--56694975 Score: 155
Period size: 43 Copynumber: 2.7 Consensus size: 43
56694849 CATAGGATTT
* *
56694859 TCGATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACAGTGGCA
* *
56694902 TCGATTTGTGTTTACGTGTAAGACC-CTATCTGGGACAGTGGCA
1 TCGATATGTGTTTACGTGTAAGACCAC-GTCTGGGACAGTGGCA
* * *
56694945 TCGATATGTGATTACATGTAAGACTACGTCT
1 TCGATATGTGTTTACGTGTAAGACCACGTCT
56694976 AAGATGTTGG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.02
43 61 0.97
44 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACAGTGGCA
Found at i:56695146 original size:15 final size:16
Alignment explanation
Indices: 56695121--56695153 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
56695111 GTAACGTATT
56695121 TGAATTATGAATTATG
1 TGAATTATGAATTATG
56695137 TGAA-TATGAATTATG
1 TGAATTATGAATTATG
56695152 TG
1 TG
56695154 TTAACATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.42
Consensus pattern (16 bp):
TGAATTATGAATTATG
Found at i:56700759 original size:11 final size:11
Alignment explanation
Indices: 56700743--56700812 Score: 70
Period size: 11 Copynumber: 6.0 Consensus size: 11
56700733 CTCTAAATCA
56700743 ACATTTAAGTC
1 ACATTTAAGTC
56700754 ACATTTAAGTC
1 ACATTTAAGTC
* *
56700765 ACA-CTCAGCATC
1 ACATTTAAG--TC
56700777 AACATTTAAGTC
1 -ACATTTAAGTC
56700789 ACATTTAAGTCAC
1 ACATTTAAGT--C
56700802 ACATTTAAGTC
1 ACATTTAAGTC
56700813 GACTTTCTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
10 3 0.06
11 25 0.51
12 4 0.08
13 14 0.29
14 3 0.06
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (11 bp):
ACATTTAAGTC
Found at i:56700805 original size:24 final size:24
Alignment explanation
Indices: 56700743--56700812 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
56700733 CTCTAAATCA
56700743 ACATTTAAGT--CACATTTAAGTC
1 ACATTTAAGTCACACATTTAAGTC
* *
56700765 ACA-CTCAG-CATCAACATTTAAGTC
1 ACATTTAAGTCA-C-ACATTTAAGTC
56700789 ACATTTAAGTCACACATTTAAGTC
1 ACATTTAAGTCACACATTTAAGTC
56700813 GACTTTCTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
21 3 0.08
22 3 0.08
23 1 0.03
24 25 0.66
25 4 0.11
26 2 0.05
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (24 bp):
ACATTTAAGTCACACATTTAAGTC
Found at i:56705076 original size:41 final size:41
Alignment explanation
Indices: 56705015--56705172 Score: 239
Period size: 41 Copynumber: 3.9 Consensus size: 41
56705005 TTTAACATAT
* *
56705015 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCCA-A
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT-CAGA
* *
56705056 TCACCGACACTTAGCTTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
*
56705097 TTACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
56705138 TCACCGGCACTTAGCCTGCTAGGTTTGA-AACCTGA
1 TCACCGGCACTTAGCCTGCTAGGTTT-ATAACCTGA
56705173 AAATTTCAAT
Statistics
Matches: 107, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
40 2 0.02
41 104 0.97
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
Found at i:56706878 original size:13 final size:13
Alignment explanation
Indices: 56706860--56706884 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56706850 CAATCAAATG
56706860 CACACAAAATAAA
1 CACACAAAATAAA
56706873 CACACAAAATAA
1 CACACAAAATAA
56706885 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:56709865 original size:15 final size:15
Alignment explanation
Indices: 56709809--56709866 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
56709799 CAATACAAAT
*
56709809 AATTTCAAATTAAAAA
1 AATTT-AAATTAACAA
*
56709825 AATATTAAATTTAACAT
1 AAT-TTAAA-TTAACAA
* *
56709842 TATTGAAATTAACAA
1 AATTTAAATTAACAA
56709857 AATTTAAATT
1 AATTTAAATT
56709867 TTCGTCTTAC
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
15 14 0.42
16 10 0.30
17 9 0.27
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (15 bp):
AATTTAAATTAACAA
Found at i:56710902 original size:4 final size:4
Alignment explanation
Indices: 56710886--56710920 Score: 52
Period size: 4 Copynumber: 8.2 Consensus size: 4
56710876 ACTAATTAAA
56710886 TATT TAGTT TATT TATT TATT TATT TATT TGATT T
1 TATT TA-TT TATT TATT TATT TATT TATT T-ATT T
56710921 GATTAGTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 21 0.72
5 8 0.28
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (4 bp):
TATT
Found at i:56714112 original size:107 final size:108
Alignment explanation
Indices: 56713987--56714201 Score: 423
Period size: 107 Copynumber: 2.0 Consensus size: 108
56713977 ATATAATCAT
56713987 TGCATATATAAAGTAAAATTAAATCAAAATTTATTTATAAAATTACAAAATTAATATATAATTTT
1 TGCATATATAAAGTAAAATTAAATCAAAATTTATTTATAAAATTACAAAATTAATATATAATTTT
56714052 GAGATTTATACTTATATATTTATATTTTCCTACCCCTGTTAAG
66 GAGATTTATACTTATATATTTATATTTTCCTACCCCTGTTAAG
56714095 TGCATATAT-AAGTAAAATTAAATCAAAATTTATTTATAAAATTACAAAATTAATATATAATTTT
1 TGCATATATAAAGTAAAATTAAATCAAAATTTATTTATAAAATTACAAAATTAATATATAATTTT
56714159 GAGATTTATACTTATATATTTATATTTTCCTACCCCTGTTAAG
66 GAGATTTATACTTATATATTTATATTTTCCTACCCCTGTTAAG
56714202 AATTCATCTA
Statistics
Matches: 107, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
107 98 0.92
108 9 0.08
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.43
Consensus pattern (108 bp):
TGCATATATAAAGTAAAATTAAATCAAAATTTATTTATAAAATTACAAAATTAATATATAATTTT
GAGATTTATACTTATATATTTATATTTTCCTACCCCTGTTAAG
Found at i:56716077 original size:16 final size:17
Alignment explanation
Indices: 56716056--56716092 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
56716046 AATTGATGAT
*
56716056 TTTAA-TAAAAATTTAA
1 TTTAATTAAAAAATTAA
56716072 TTTAATTAAAAAATTAA
1 TTTAATTAAAAAATTAA
56716089 TTTA
1 TTTA
56716093 TATACTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTAATTAAAAAATTAA
Found at i:56723274 original size:63 final size:64
Alignment explanation
Indices: 56723170--56723295 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 64
56723160 ATCGCTTTTG
*
56723170 TTTTATAAGAAAATCTTCATCTCGAAAAAGCAATATGTCATGCCCAATACATTAGGACACAACTA
1 TTTTATAAGAAAATCTTCA-CTCGAAAAAGCAATATATCATGCCCAATACATTAGGACACAACTA
*
56723235 TTTTATAAGAAAATCTTC-CTCGAGAAAGCAATATATCATGCCCAATACATTAGGACACAAC
1 TTTTATAAGAAAATCTTCACTCGAAAAAGCAATATATCATGCCCAATACATTAGGACACAAC
56723296 AAGTTAAATT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
63 41 0.69
65 18 0.31
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.27
Consensus pattern (64 bp):
TTTTATAAGAAAATCTTCACTCGAAAAAGCAATATATCATGCCCAATACATTAGGACACAACTA
Found at i:56724698 original size:45 final size:45
Alignment explanation
Indices: 56724669--56725539 Score: 1082
Period size: 45 Copynumber: 19.4 Consensus size: 45
56724659 CTGCCGATAC
* *
56724669 AGGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTACCAATAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * * * * *
56724714 AGGAAAACAAGATCCGTTATCTTCGATCTACTTCGCCACTAGTGT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
** * *
56724759 -GGAAAGACAAGATCTACTATCTTTGATCTACTTCGCTGCCAGTAC
1 AGG-AAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * *
56724804 AGGAATACAAGATCTGTTATCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * *
56724849 -GGAAAGACAAGATCTGCTATCTTTGATCTATTTCGCTACCAGTAC
1 AGG-AAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
*
56724894 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * *
56724939 GGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* *
56724984 AGGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTACCAGTAC
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * * *
56725029 AGGAAGACAAGATCCGTTATCTTCGATCTACTTCACCACCAGTAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* ** * *
56725074 GGGAAGACAAGATCTACTATCTTTGATCTACTTCGCTGCCAGTAC
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * * * *
56725119 AGGAAGACAATATCCGTTATCTTCGATCTACTTTGCCACCAGTAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * *
56725164 GGGAAGACAAGATCCGTTAT-TTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGTTATCTTT-GATCTACTTCGCTACCAGTAT
* * *
56725209 GGGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCAGTAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * **
56725254 AGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCCATTAGTAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * * *
56725299 GGGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCAGTAC
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * * *
56725344 AAGAAGACAAGATCCGTTATCTTTGATCTACTTCGCCACCAGCAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * * *
56725389 GGGAAGACAAGATCCGTTATCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * * *
56725434 GGGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCAGTAC
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
* * *
56725479 AGGAAGACAAGATCCGTTATCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
*
56725524 GGGAAGACAAGATCTG
1 AGGAAGACAAGATCTG
56725540 CTCCTAACTA
Statistics
Matches: 703, Mismatches: 117, Indels: 12
0.84 0.14 0.01
Matches are distributed among these distances:
44 6 0.01
45 690 0.98
46 7 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (45 bp):
AGGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAGTAT
Found at i:56727136 original size:189 final size:189
Alignment explanation
Indices: 56726909--56727287 Score: 749
Period size: 189 Copynumber: 2.0 Consensus size: 189
56726899 ACCCTTTGTA
56726909 AACACAACTTAGAATTTATCAAATTTCAGATTTGCAAAGTGCAGAATTTTCTTTGAGGTTTTCTC
1 AACACAACTTAGAATTTATCAAATTTCAGATTTGCAAAGTGCAGAATTTTCTTTGAGGTTTTCTC
56726974 CAAGAATTCTCTCTTGAGCTTTCTTTAGAAGTTGTTTTAACAATCTTTTGATTGTGGGAGCCATC
66 CAAGAATTCTCTCTTGAGCTTTCTTTAGAAGTTGTTTTAACAATCTTTTGATTGTGGGAGCCATC
56727039 TTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
131 TTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
56727098 AACACAACTTAGAATTTATCAAATTTCAGATTTGCAAAGTGCAGAATTTTCTTTGAGGTTTTCTC
1 AACACAACTTAGAATTTATCAAATTTCAGATTTGCAAAGTGCAGAATTTTCTTTGAGGTTTTCTC
56727163 CAAGAATTCTCTCTTGAGCTTTCTTTAGAAGTTGTTTTAACAATCTTTTGATTGTGGGAGCCATC
66 CAAGAATTCTCTCTTGAGCTTTCTTTAGAAGTTGTTTTAACAATCTTTTGATTGTGGGAGCCATC
*
56727228 TTCAACCTTCTTCTTGCCATTGTTATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
131 TTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
56727287 A
1 A
56727288 TTTGTGAAAT
Statistics
Matches: 189, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 189 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (189 bp):
AACACAACTTAGAATTTATCAAATTTCAGATTTGCAAAGTGCAGAATTTTCTTTGAGGTTTTCTC
CAAGAATTCTCTCTTGAGCTTTCTTTAGAAGTTGTTTTAACAATCTTTTGATTGTGGGAGCCATC
TTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
Found at i:56731012 original size:157 final size:158
Alignment explanation
Indices: 56730715--56731030 Score: 616
Period size: 157 Copynumber: 2.0 Consensus size: 158
56730705 TCTATACATG
56730715 CCATGTTTCAAAAGTGTTGATTGCCAAAATACCCAAAAAGTTGATGATAGTGTGGATGATTTTCT
1 CCATGTTTC-AAAGTGTTGATTGCCAAAATACCCAAAAAGTTGATGATAGTGTGGATGATTTTCT
56730780 GACTTCGTCCAAGTTCCGAACTGGCTGATGTCACTATAATCAGGGGAAAATACAAACGAGTAAGC
65 GACTTCGTCCAAGTTCCGAACTGGCTGATGTCACTATAATCAGGGGAAAATACAAACGAGTAAGC
56730845 ATATAGCTTAGTAAGTAAACATATGACAA
130 ATATAGCTTAGTAAGTAAACATATGACAA
56730874 CCATGTTTC-AAGTGTTGATTGCCAAAATACCCAAAAAGTTGATGATAGTGTGGATGATTTTCTG
1 CCATGTTTCAAAGTGTTGATTGCCAAAATACCCAAAAAGTTGATGATAGTGTGGATGATTTTCTG
56730938 ACTTCGTCCAAGTTCCGAACTGGCTGATGTCACTATAATCAGGGGAAAATACAAACGAGTAAGCA
66 ACTTCGTCCAAGTTCCGAACTGGCTGATGTCACTATAATCAGGGGAAAATACAAACGAGTAAGCA
56731003 TATAGCTTAGTAAGTAAACATATGACAA
131 TATAGCTTAGTAAGTAAACATATGACAA
56731031 GTAAATAAAT
Statistics
Matches: 157, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
157 148 0.94
159 9 0.06
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (158 bp):
CCATGTTTCAAAGTGTTGATTGCCAAAATACCCAAAAAGTTGATGATAGTGTGGATGATTTTCTG
ACTTCGTCCAAGTTCCGAACTGGCTGATGTCACTATAATCAGGGGAAAATACAAACGAGTAAGCA
TATAGCTTAGTAAGTAAACATATGACAA
Found at i:56731952 original size:75 final size:77
Alignment explanation
Indices: 56731836--56732042 Score: 283
Period size: 75 Copynumber: 2.7 Consensus size: 77
56731826 ATTGGTGGAT
* * * *
56731836 TCAGCACTTAGCAACCACCAGTGATTTGGGGAATCAGCACTTAACAACCCCTTTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAAA
*
56731901 TACGGTGG-G-A
66 TACGATGGAGAA
* * *
56731911 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATAAGCACTTAGCAACCCCCTTCACATTTAAAA
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAAA
56731976 TACGATGGAAAGAA
66 TACGATGG--AGAA
* * *
56731990 TCATCACTTAGCAACCACCAATGATTCAGGGAATCAGCATTTAGCAACCCCTT
1 TCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTT
56732043 GGGGGAATCA
Statistics
Matches: 114, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
75 65 0.57
78 1 0.01
79 48 0.42
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (77 bp):
TCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAAA
TACGATGGAGAA
Found at i:56732137 original size:102 final size:104
Alignment explanation
Indices: 56731938--56732172 Score: 348
Period size: 102 Copynumber: 2.3 Consensus size: 104
56731928 CCAATGAGTC
* *
56731938 GGGGAATAAGCACTTAGCAACCCCCTTCACATTTAAAATACGATGGAAAGAATCATCACTTAGCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATA--ATGGAAAGAATCAGCACTTAGCA
**
56732003 ACCACCAATGATTCAGGGAATCAGCATTTAGCAACCCCTTG
64 ACCACCAATGATTCAGGGAATCAGCACGTAGCAACCCCTTG
* **
56732044 GGGGAATCAGTACTTAGCAACCCCCTTCACATTTAAAAT-ATGG-TGGAATCAGCACTTAGCAAC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATAATGGAAAGAATCAGCACTTAGCAAC
*
56732107 CACCAATGATTCGGGGAATCAGCACGTAGCAACCCCTTG
66 CACCAATGATTCAGGGAATCAGCACGTAGCAACCCCTTG
* *
56732146 GAGGAATCAGCACTTAGCAATCCCCTT
1 GGGGAATCAGCACTTAGCAACCCCCTT
56732173 TATATTCAAT
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
102 77 0.65
103 4 0.03
106 37 0.31
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (104 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATAATGGAAAGAATCAGCACTTAGCAAC
CACCAATGATTCAGGGAATCAGCACGTAGCAACCCCTTG
Found at i:56739377 original size:27 final size:28
Alignment explanation
Indices: 56739335--56739388 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 28
56739325 ATTGAATATA
*
56739335 AAGGGGATTGCTAAGTGCTGATTCCCCC
1 AAGGGGATTACTAAGTGCTGATTCCCCC
56739363 AAGGGG-TTACTAAGTGCTGATTCCCC
1 AAGGGGATTACTAAGTGCTGATTCCCC
56739389 GAATCATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (28 bp):
AAGGGGATTACTAAGTGCTGATTCCCCC
Found at i:56739417 original size:33 final size:33
Alignment explanation
Indices: 56739367--56739601 Score: 122
Period size: 33 Copynumber: 6.7 Consensus size: 33
56739357 TCCCCCAAGG
*
56739367 GGTTACTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * * * *
56739400 GGTTGCTAAGTGTTGATTCCACTGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--AT-CAT-T---GGT
* *
56739442 GGTTGCTAAGTGTTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
56739469 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* ** *
56739502 GGTTGCTAAGTGCTGATCCCACCGTGTCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGAATC----AT-TG---GT
* *
56739544 GGTTGCTAAGTGCTAATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
56739577 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
56739602 TAACGGACAA
Statistics
Matches: 154, Mismatches: 23, Indels: 49
0.68 0.10 0.22
Matches are distributed among these distances:
27 21 0.14
28 2 0.01
31 2 0.01
32 2 0.01
33 57 0.37
34 11 0.07
35 1 0.01
36 2 0.01
37 2 0.01
38 4 0.03
39 3 0.02
41 6 0.04
42 41 0.27
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:56739511 original size:102 final size:102
Alignment explanation
Indices: 56739335--56739565 Score: 372
Period size: 102 Copynumber: 2.3 Consensus size: 102
56739325 ATTGAATATA
*
56739335 AAGGGGATTGCTAAGTGCTGATTCCCCCAAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGT
* * * *
56739400 GGTTGCTAAGTGTTGATTCCACTGTATTTTAAATGTG
66 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
* *
56739437 AAGGGGGTTGCTAAGTGTTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGT
*
56739502 GGTTGCTAAGTGCTGATCCCACCGTGTCTTAAATGTG
66 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
* *
56739539 AAAGGGGTTGCTAAGTGCTAATTCCCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCC
56739566 GAATCACTGG
Statistics
Matches: 118, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 118 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGT
GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
Found at i:56742185 original size:16 final size:16
Alignment explanation
Indices: 56742160--56742194 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
56742150 TTCTATGATG
*
56742160 AAATGCCATGCAGTCA
1 AAATGCCATGCAGCCA
*
56742176 AAATGTCATGCAGCCA
1 AAATGCCATGCAGCCA
56742192 AAA
1 AAA
56742195 CAAAACACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (16 bp):
AAATGCCATGCAGCCA
Found at i:56743956 original size:3 final size:3
Alignment explanation
Indices: 56743948--56743977 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
56743938 ATATATATAG
*
56743948 TAA TAA TAA TAA CAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
56743978 CAAATAGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:56746022 original size:24 final size:24
Alignment explanation
Indices: 56745994--56746042 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
56745984 CCACTAAAAA
56745994 ACAAGATTTTACCGTAATACTTTG
1 ACAAGATTTTACCGTAATACTTTG
56746018 ACAAGATTTTACCGTAATACTTTG
1 ACAAGATTTTACCGTAATACTTTG
56746042 A
1 A
56746043 TCTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (24 bp):
ACAAGATTTTACCGTAATACTTTG
Found at i:56757012 original size:16 final size:16
Alignment explanation
Indices: 56756991--56757024 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
56756981 CTTCAACCTC
*
56756991 TCATTTCCTTCTCATT
1 TCATTTCCTCCTCATT
56757007 TCATTTCCTCCTCATT
1 TCATTTCCTCCTCATT
56757023 TC
1 TC
56757025 CTCTCCGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.53
Consensus pattern (16 bp):
TCATTTCCTCCTCATT
Found at i:56757647 original size:53 final size:53
Alignment explanation
Indices: 56757567--56757669 Score: 206
Period size: 53 Copynumber: 1.9 Consensus size: 53
56757557 TTGCTGAGGT
56757567 TCGACAAATGAAGTAGGATTGAACACAAGAGTAGGAACTTCATCTATCTGCTA
1 TCGACAAATGAAGTAGGATTGAACACAAGAGTAGGAACTTCATCTATCTGCTA
56757620 TCGACAAATGAAGTAGGATTGAACACAAGAGTAGGAACTTCATCTATCTG
1 TCGACAAATGAAGTAGGATTGAACACAAGAGTAGGAACTTCATCTATCTG
56757670 TTGTTGTTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (53 bp):
TCGACAAATGAAGTAGGATTGAACACAAGAGTAGGAACTTCATCTATCTGCTA
Found at i:56757696 original size:18 final size:18
Alignment explanation
Indices: 56757673--56757710 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
56757663 CTATCTGTTG
56757673 TTGTTTAAAGTTGTGCAT
1 TTGTTTAAAGTTGTGCAT
56757691 TTGTTTAAAGTTGTGCAT
1 TTGTTTAAAGTTGTGCAT
56757709 TT
1 TT
56757711 TTTTCAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.21, T:0.53
Consensus pattern (18 bp):
TTGTTTAAAGTTGTGCAT
Found at i:56757993 original size:13 final size:11
Alignment explanation
Indices: 56757965--56757998 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
56757955 ATTTTTTTCT
56757965 CATATATTGTA
1 CATATATTGTA
56757976 CATATATTGTA
1 CATATATTGTA
56757987 CATATATTGTA
1 CATATATTGTA
56757998 C
1 C
56757999 TAATTCCTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (11 bp):
CATATATTGTA
Found at i:56766071 original size:30 final size:30
Alignment explanation
Indices: 56766035--56766204 Score: 125
Period size: 30 Copynumber: 5.7 Consensus size: 30
56766025 AGCCGAAGCT
* * *
56766035 ATCCCTTTTCATTATTTGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGCCATCACA
*
56766065 ATCCCTTTTCATAATTTGATAG-C-TCA-A
1 ATCCCTTTTCATAATTTGATGGCCATCACA
* * * *
56766092 GTTATCCCTTTTCACAATTCGATAGCCGA--AGCC
1 ---ATCCCTTTTCATAATTTGATGGCC-ATCA-CA
** * *
56766125 ATCCCTTTTCATTGTTCGATGGCCGTCACA
1 ATCCCTTTTCATAATTTGATGGCCATCACA
* * *
56766155 ATCCCTTTTCATTATTTGATGGTCGTCACA
1 ATCCCTTTTCATAATTTGATGGCCATCACA
56766185 ATCCCTTTTCATAATTTGAT
1 ATCCCTTTTCATAATTTGAT
56766205 AGCCGAGGCT
Statistics
Matches: 114, Mismatches: 16, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
28 3 0.03
29 1 0.01
30 107 0.94
31 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGCCATCACA
Found at i:56766189 original size:90 final size:88
Alignment explanation
Indices: 56766023--56766235 Score: 239
Period size: 90 Copynumber: 2.4 Consensus size: 88
56766013 CCACGACTCA
* * * *
56766023 ATAGCCGAAGCTATCCCTTTTCATTATTTGATGGTCATCACCATCCCTTTTCATAATTTGATAGC
1 ATAGCCGAAGCCATCCCTTTTCATTATTCGATGGCCATCACAATCCCTTTTCATAATTTGATAGC
56766088 TCAAGTTATCCCTTTTCACAATTCG
66 TCAA--TATCCCTTTTCACAATTCG
* * * *
56766113 ATAGCCGAAGCCATCCCTTTTCATTGTTCGATGGCCGTCACAATCCCTTTTCATTATTTGATGGT
1 ATAGCCGAAGCCATCCCTTTTCATTATTCGATGGCCATCACAATCCCTTTTCATAATTTGATAG-
* *
56766178 CGTCACA-ATCCCTTTTCATAATTTG
65 C-TCA-ATATCCCTTTTCACAATTCG
* * * *
56766203 ATAGCCGAGGCTATCCTTTTTTATTATTTCGAT
1 ATAGCCGAAGCCATCCCTTTTCATTA-TTCGAT
56766236 AGCTGAAGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
90 93 0.89
91 7 0.07
92 3 0.03
93 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (88 bp):
ATAGCCGAAGCCATCCCTTTTCATTATTCGATGGCCATCACAATCCCTTTTCATAATTTGATAGC
TCAATATCCCTTTTCACAATTCG
Found at i:56766229 original size:60 final size:60
Alignment explanation
Indices: 56766023--56766231 Score: 208
Period size: 60 Copynumber: 3.5 Consensus size: 60
56766013 CCACGACTCA
*
56766023 ATAGCCGAAGCTATCCCTTTTCATTATTTGATGGTCATCACCATCCCTTTTCATAATTTG
1 ATAGCCGAAGCTATCCCTTTTCATTATTTGATGGTCGTCACCATCCCTTTTCATAATTTG
* ** * * * * ** *
56766083 ATAGCTC-AAGTTATCCCTTTTCACAATTCGATAGCCG-AAGCCATCCCTTTTCATTGTTCG
1 ATAGC-CGAAGCTATCCCTTTTCATTATTTGATGGTCGTCA-CCATCCCTTTTCATAATTTG
* * * *
56766143 ATGGCCGTCA-CAATCCCTTTTCATTATTTGATGGTCGTCACAATCCCTTTTCATAATTTG
1 ATAGCCG-AAGCTATCCCTTTTCATTATTTGATGGTCGTCACCATCCCTTTTCATAATTTG
* * *
56766203 ATAGCCGAGGCTATCCTTTTTTATTATTT
1 ATAGCCGAAGCTATCCCTTTTCATTATTT
56766232 CGATAGCTGA
Statistics
Matches: 112, Mismatches: 31, Indels: 12
0.72 0.20 0.08
Matches are distributed among these distances:
59 2 0.02
60 107 0.96
61 3 0.03
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (60 bp):
ATAGCCGAAGCTATCCCTTTTCATTATTTGATGGTCGTCACCATCCCTTTTCATAATTTG
Found at i:56771946 original size:21 final size:21
Alignment explanation
Indices: 56771922--56771961 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
56771912 TGAGGTGAAA
56771922 AAATTTCTAGTTGACAAATCC
1 AAATTTCTAGTTGACAAATCC
* *
56771943 AAATTTGTAGTTGATAAAT
1 AAATTTCTAGTTGACAAAT
56771962 ATTATTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (21 bp):
AAATTTCTAGTTGACAAATCC
Found at i:56773112 original size:20 final size:20
Alignment explanation
Indices: 56773031--56773120 Score: 94
Period size: 20 Copynumber: 4.5 Consensus size: 20
56773021 GAAGCAATTC
* *
56773031 TGACTTGTTTGAAAATCATTT
1 TGACTTGATT-AAAATTATTT
*
56773052 TGA-TATG-TTAAAATGATTT
1 TGACT-TGATTAAAATTATTT
* *
56773071 TAACTTGATTGAAATTATTT
1 TGACTTGATTAAAATTATTT
56773091 TGACTTGATTAAAATTATTT
1 TGACTTGATTAAAATTATTT
*
56773111 TGACCTGATT
1 TGACTTGATT
56773121 TTAAAATTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
19 13 0.22
20 41 0.69
21 5 0.08
ACGTcount: A:0.32, C:0.07, G:0.13, T:0.48
Consensus pattern (20 bp):
TGACTTGATTAAAATTATTT
Found at i:56773476 original size:18 final size:18
Alignment explanation
Indices: 56773450--56773486 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
56773440 TAAAAATATA
*
56773450 TATATATATTTGAAATTT
1 TATAAATATTTGAAATTT
*
56773468 TATAAATATTTTAAATTT
1 TATAAATATTTGAAATTT
56773486 T
1 T
56773487 TGAAAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TATAAATATTTGAAATTT
Found at i:56773499 original size:20 final size:21
Alignment explanation
Indices: 56773474--56773515 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
56773464 ATTTTATAAA
56773474 TATTTTAAA-TTTTTGAAAAT
1 TATTTTAAACTTTTTGAAAAT
*
56773494 TATTTTAAACTTTTTGATAAT
1 TATTTTAAACTTTTTGAAAAT
56773515 T
1 T
56773516 TTTATTTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTTTAAACTTTTTGAAAAT
Found at i:56786994 original size:18 final size:18
Alignment explanation
Indices: 56786971--56787008 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
56786961 AGGGGATTAG
56786971 TGAAAAGTGAAATTAAAA
1 TGAAAAGTGAAATTAAAA
56786989 TGAAAAGTGAAATTAAAA
1 TGAAAAGTGAAATTAAAA
56787007 TG
1 TG
56787009 TAAGTTCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.18, T:0.24
Consensus pattern (18 bp):
TGAAAAGTGAAATTAAAA
Found at i:56788775 original size:28 final size:27
Alignment explanation
Indices: 56788690--56788801 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
56788680 TAAATGACCG
**
56788690 AAATTACTGAAATACCCTCGAAGGGT-
1 AAATTACCAAAATACCCTCGAAGGGTA
* *
56788716 AAATTATCAAAATACCCTTGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
* *
56788743 AAATTACCAAAATACCCCCCAAAGGGTA
1 AAATTACCAAAATA-CCCTCGAAGGGTA
*
56788771 AAATTACTAAAATACCCTCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
56788798 AAAT
1 AAAT
56788802 GACTGTTATA
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 22 0.30
27 28 0.38
28 23 0.32
ACGTcount: A:0.45, C:0.20, G:0.14, T:0.21
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGAAGGGTA
Found at i:56789061 original size:26 final size:26
Alignment explanation
Indices: 56788987--56789090 Score: 82
Period size: 26 Copynumber: 4.0 Consensus size: 26
56788977 ACAAATACTA
** *
56788987 TTACTGGCAGCTTTGCTGCATTACTG
1 TTACTGGCAGCTTTGCTGTGTTATTG
* * * * * *
56789013 ATACTAGCAACTCTACTGCGTTATTG
1 TTACTGGCAGCTTTGCTGTGTTATTG
* * *
56789039 TTACTGGCAGTTTTGCTGTGTTACTA
1 TTACTGGCAGCTTTGCTGTGTTATTG
* *
56789065 TTACTGGTAGCTTTGCTGTGATATTG
1 TTACTGGCAGCTTTGCTGTGTTATTG
56789091 GTGTGTTGGC
Statistics
Matches: 57, Mismatches: 21, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.41
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGTGTTATTG
Found at i:56789257 original size:30 final size:29
Alignment explanation
Indices: 56789204--56789306 Score: 118
Period size: 30 Copynumber: 3.5 Consensus size: 29
56789194 GATTACTATT
*
56789204 TTGGGCTAAGGCCCACA-CTGTTACTGAA
1 TTGGGCTAAGGCCCACACCTGTTACTGTA
56789232 TTGGGCTAAGGCCCACACTCTGTTACTGTA
1 TTGGGCTAAGGCCCACAC-CTGTTACTGTA
* * * *
56789262 TTAGGTTATGGCCCACACACTGCTACTGTA
1 TTGGGCTAAGGCCCACAC-CTGTTACTGTA
* *
56789292 TAGGGCTCAGGCCCA
1 TTGGGCTAAGGCCCA
56789307 GACTGATTCT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
28 17 0.27
30 45 0.73
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (29 bp):
TTGGGCTAAGGCCCACACCTGTTACTGTA
Found at i:56799786 original size:18 final size:19
Alignment explanation
Indices: 56799751--56799789 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
56799741 GGGGTGTTAC
*
56799751 AATATTCTTTAGATTTTTT
1 AATATTCTTTAGAATTTTT
*
56799770 AATATT-TTTATAATTTTT
1 AATATTCTTTAGAATTTTT
56799788 AA
1 AA
56799790 AAATATAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
AATATTCTTTAGAATTTTT
Found at i:56801704 original size:20 final size:23
Alignment explanation
Indices: 56801646--56801691 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
56801636 TCGATACCTG
56801646 GTAAAAGGTATCGATATAATTTT
1 GTAAAAGGTATCGATATAATTTT
56801669 GTAAAAGGTATCGATATAATTTT
1 GTAAAAGGTATCGATATAATTTT
56801692 ATGGGTATCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.39
Consensus pattern (23 bp):
GTAAAAGGTATCGATATAATTTT
Found at i:56811064 original size:14 final size:14
Alignment explanation
Indices: 56811045--56811083 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
56811035 ATGCCTAATA
56811045 TTTGATTTTGCCTT
1 TTTGATTTTGCCTT
56811059 TTTGATTTTGCCTT
1 TTTGATTTTGCCTT
*
56811073 TTTTATTTTGC
1 TTTGATTTTGC
56811084 TCATCTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.08, C:0.13, G:0.13, T:0.67
Consensus pattern (14 bp):
TTTGATTTTGCCTT
Found at i:56811695 original size:27 final size:27
Alignment explanation
Indices: 56811656--56811824 Score: 214
Period size: 27 Copynumber: 6.3 Consensus size: 27
56811646 ATTCATGGGC
* *
56811656 AAATGACCGAAATACCTTCGAAGGGTA
1 AAATGACCAAAATACCCTCGAAGGGTA
*
56811683 AAATGACTAAAATACCCTCGAAGGGTA
1 AAATGACCAAAATACCCTCGAAGGGTA
* *
56811710 AAATGACCGAAATACCCTCGAAAGGTA
1 AAATGACCAAAATACCCTCGAAGGGTA
* * *
56811737 AAATGACCAAAATACCCCCAAAAGGTA
1 AAATGACCAAAATACCCTCGAAGGGTA
**
56811764 AAATGACTGAAATACCCTCGAAGGGTA
1 AAATGACCAAAATACCCTCGAAGGGTA
**
56811791 AAATGACCAAAATA-CCTTTATAGGGTA
1 AAATGACCAAAATACCCTCGA-AGGGTA
56811818 AAATGAC
1 AAATGAC
56811825 TGTTATACCC
Statistics
Matches: 123, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 4 0.03
27 119 0.97
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.18
Consensus pattern (27 bp):
AAATGACCAAAATACCCTCGAAGGGTA
Found at i:56811738 original size:54 final size:54
Alignment explanation
Indices: 56811656--56811824 Score: 248
Period size: 54 Copynumber: 3.1 Consensus size: 54
56811646 ATTCATGGGC
* * *
56811656 AAATGACCGAAATACCTTCGAAGGGTAAAATGACTAAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCAAAATACCCTCAAAGGGTA
* * *
56811710 AAATGACCGAAATACCCTCGAAAGGTAAAATGACCAAAATACCCCCAAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCAAAATACCCTCAAAGGGTA
* * * *
56811764 AAATGACTGAAATACCCTCGAAGGGTAAAATGACCAAAATACCTTTATAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCAAAATACCCTCAAAGGGTA
56811818 AAATGAC
1 AAATGAC
56811825 TGTTATACCC
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 102 1.00
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.18
Consensus pattern (54 bp):
AAATGACCGAAATACCCTCGAAGGGTAAAATGACCAAAATACCCTCAAAGGGTA
Found at i:56811849 original size:81 final size:81
Alignment explanation
Indices: 56811656--56811806 Score: 239
Period size: 81 Copynumber: 1.9 Consensus size: 81
56811646 ATTCATGGGC
* ** * * *
56811656 AAATGACCGAAATACCTTCGAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACCGAA
1 AAATGACCAAAATACCCCCAAAAGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACCAAA
56811721 ATACCCTCGAAAGGTA
66 ATACCCTCGAAAGGTA
*
56811737 AAATGACCAAAATACCCCCAAAAGGTAAAATGACTGAAATACCCTCGAAGGGTAAAATGACCAAA
1 AAATGACCAAAATACCCCCAAAAGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACCAAA
56811802 ATACC
66 ATACC
56811807 TTTATAGGGT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.16
Consensus pattern (81 bp):
AAATGACCAAAATACCCCCAAAAGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACCAAA
ATACCCTCGAAAGGTA
Found at i:56812263 original size:28 final size:28
Alignment explanation
Indices: 56812222--56812288 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
56812212 CCCATATTAC
* *
56812222 ACTGTTACTACTTAGGGGTAAGGCCTAG
1 ACTGTTACTACTTAGGGCTAAGGCCCAG
* *
56812250 ACTGTTACTGCTTAGGGCTTAGGCCCAG
1 ACTGTTACTACTTAGGGCTAAGGCCCAG
*
56812278 ACTGTAACTAC
1 ACTGTTACTAC
56812289 ATGTCGTATA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (28 bp):
ACTGTTACTACTTAGGGCTAAGGCCCAG
Found at i:56814244 original size:18 final size:18
Alignment explanation
Indices: 56814221--56814265 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
56814211 TCTTGGTTCA
* *
56814221 TTTCAAGTACTTTAAAAT
1 TTTCAAGCACTTTAAAAC
56814239 TTTCAAGCACTTTAAAAC
1 TTTCAAGCACTTTAAAAC
*
56814257 TTTCCAGCA
1 TTTCAAGCA
56814266 TATCATAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.38
Consensus pattern (18 bp):
TTTCAAGCACTTTAAAAC
Found at i:56815372 original size:14 final size:14
Alignment explanation
Indices: 56815355--56815385 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
56815345 AACCATTTAT
56815355 TTTTAACTAAAAAG
1 TTTTAACTAAAAAG
*
56815369 TTTTAATTAAAAAG
1 TTTTAACTAAAAAG
56815383 TTT
1 TTT
56815386 GAGGAGCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (14 bp):
TTTTAACTAAAAAG
Found at i:56822230 original size:10 final size:10
Alignment explanation
Indices: 56822215--56822263 Score: 57
Period size: 10 Copynumber: 4.8 Consensus size: 10
56822205 ATGAACATGT
56822215 TTAATTTTGA
1 TTAATTTTGA
56822225 TTAATTTT-A
1 TTAATTTTGA
56822234 TATCAAATTTTGA
1 T-T--AATTTTGA
56822247 TTAATTTTGA
1 TTAATTTTGA
56822257 TT-ATTTT
1 TTAATTTT
56822264 CCACATATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
9 7 0.20
10 19 0.54
12 7 0.20
13 2 0.06
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (10 bp):
TTAATTTTGA
Found at i:56826537 original size:50 final size:50
Alignment explanation
Indices: 56826430--56826669 Score: 291
Period size: 50 Copynumber: 4.7 Consensus size: 50
56826420 GTAAAGAGAA
*
56826430 CCCAAGTAAGACCATGTCTGGGACATGGCATTGGCACCCTTGAGATCATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-C--GAGAGGT
**
56826486 CCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGACGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGT
* ** *
56826536 CCAATGTAAGACCATGTCTGGGACATGGCGCTGGCACCGAGATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGT
* * * * **
56826586 CCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGT
* *
56826636 CCCATGTAAGACCATATCTGGGATATGGCATTGG
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGG
56826670 NNNNNNNNNN
Statistics
Matches: 165, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
50 125 0.76
52 1 0.01
53 4 0.02
55 2 0.01
56 33 0.20
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.20
Consensus pattern (50 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGT
Found at i:56832142 original size:5 final size:5
Alignment explanation
Indices: 56832132--56832175 Score: 52
Period size: 5 Copynumber: 8.2 Consensus size: 5
56832122 ATGCTCGTGA
*
56832132 AAAAG AAAAG AAAAAG AAAAG AAAAG AGAAAG AACAAA AAAAG A
1 AAAAG AAAAG -AAAAG AAAAG AAAAG A-AAAG AA-AAG AAAAG A
56832176 GAGCATATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 20 0.59
6 14 0.41
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:56832146 original size:11 final size:11
Alignment explanation
Indices: 56832130--56832175 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
56832120 AAATGCTCGT
56832130 GAAAAAGAAAA
1 GAAAAAGAAAA
56832141 GAAAAAGAAAA
1 GAAAAAGAAAA
56832152 G-AAAAGAGAAA
1 GAAAAAGA-AAA
56832163 GAACAAA-AAAA
1 GAA-AAAGAAAA
56832174 GA
1 GA
56832176 GAGCATATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
10 6 0.19
11 21 0.66
12 2 0.06
13 3 0.09
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (11 bp):
GAAAAAGAAAA
Found at i:56832153 original size:16 final size:16
Alignment explanation
Indices: 56832132--56832175 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
56832122 ATGCTCGTGA
56832132 AAAAGAAAAGAAAAAG
1 AAAAGAAAAGAAAAAG
*
56832148 AAAAGAAAAGAGAAAG
1 AAAAGAAAAGAAAAAG
*
56832164 AACAAAAAAAGA
1 AA-AAGAAAAGA
56832176 GAGCATATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAGAAAAAG
Found at i:56833498 original size:25 final size:23
Alignment explanation
Indices: 56833461--56833507 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
56833451 AACCATTCAT
56833461 TCTTCACTTTTCTCTCAGTTTTCTC
1 TCTTCACTTTTCT-TCA-TTTTCTC
56833486 TCTTCA-TTGTTCTTCATTTTCT
1 TCTTCACTT-TTCTTCATTTTCT
56833508 TCCCCATTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.29
24 5 0.24
25 10 0.48
ACGTcount: A:0.09, C:0.28, G:0.04, T:0.60
Consensus pattern (23 bp):
TCTTCACTTTTCTTCATTTTCTC
Found at i:56845391 original size:27 final size:27
Alignment explanation
Indices: 56845348--56845399 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
56845338 TTTTCGCCTT
* *
56845348 TTTTATTTTCATTTTCTTCTTTTTCAC
1 TTTTATTTTCATCTTCTCCTTTTTCAC
56845375 TTTTATTTTTC-TCTTCTCCTTTTTC
1 TTTTA-TTTTCATCTTCTCCTTTTTC
56845400 TTTTTCGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.71
Consensus pattern (27 bp):
TTTTATTTTCATCTTCTCCTTTTTCAC
Done.