Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 183 of 210
Found at i:60782564 original size:17 final size:17
Alignment explanation
Indices: 60782539--60782577 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
60782529 AGGCTAAGCT
*
60782539 TTTAAAAATATATTTTA
1 TTTACAAATATATTTTA
* *
60782556 TTTACAAATTTGTTTTA
1 TTTACAAATATATTTTA
60782573 TTTAC
1 TTTAC
60782578 TTAAATTTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (17 bp):
TTTACAAATATATTTTA
Found at i:60787808 original size:23 final size:23
Alignment explanation
Indices: 60787778--60787821 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
60787768 AATGGAGTTA
60787778 GAACACAAGGCATTTTGGGCAAT
1 GAACACAAGGCATTTTGGGCAAT
60787801 GAACACAAGGCATTTTGGGCA
1 GAACACAAGGCATTTTGGGCA
60787822 GTAAAAAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.20
Consensus pattern (23 bp):
GAACACAAGGCATTTTGGGCAAT
Found at i:60789359 original size:23 final size:23
Alignment explanation
Indices: 60789328--60789402 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
60789318 TTATTTTTAA
*
60789328 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
60789351 ACTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
* *
60789374 ATTTAGAATTTTTTAATGATAAT
1 ATTTAGAATTATTTAGTGATAAT
60789397 ATTTAG
1 ATTTAG
60789403 GAAAAATCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.37, C:0.01, G:0.12, T:0.49
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:60805769 original size:2 final size:2
Alignment explanation
Indices: 60805764--60805791 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
60805754 AGAGAAAATG
60805764 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60805792 GCATCTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60807054 original size:13 final size:13
Alignment explanation
Indices: 60807018--60807048 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
60807008 ATTTTAGCTT
*
60807018 CTTTTTAAAAGTG
1 CTTTTCAAAAGTG
60807031 CTTTTCAAAAGTG
1 CTTTTCAAAAGTG
60807044 CTTTT
1 CTTTT
60807049 GGAAAGCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (13 bp):
CTTTTCAAAAGTG
Found at i:60808050 original size:19 final size:19
Alignment explanation
Indices: 60808013--60808054 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
60808003 TTTGGGATTT
*
60808013 GGGGGAAGTAAAATTTTTG
1 GGGGGAAGTAAAATGTTTG
60808032 AGGGGGAAGTAAAA-GTTTG
1 -GGGGGAAGTAAAATGTTTG
60808051 GGGG
1 GGGG
60808055 AAAAAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 4 0.19
20 13 0.62
ACGTcount: A:0.31, C:0.00, G:0.45, T:0.24
Consensus pattern (19 bp):
GGGGGAAGTAAAATGTTTG
Found at i:60808115 original size:54 final size:52
Alignment explanation
Indices: 60808036--60808151 Score: 142
Period size: 54 Copynumber: 2.2 Consensus size: 52
60808026 TTTTTGAGGG
* * *
60808036 GGAAGTAAAAGTTTGGGGGAAAAAGTAAAAGGAAAAAAGTTTTGAGGGTTTGG
1 GGAAGTAAAACTTTGGGAGAAAAAGTAAAAGGAAAAAAGTTTTG-GGGTTTGA
* * * * *
60808089 GAGAAGTAAAACTTTTGGAGAGAAAGTAAAATGTAAAAGGTTTTGGGGTTTGA
1 G-GAAGTAAAACTTTGGGAGAAAAAGTAAAAGGAAAAAAGTTTTGGGGTTTGA
60808142 GGAAGTAAAA
1 GGAAGTAAAA
60808152 ATTTAGAGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
52 9 0.17
53 9 0.17
54 36 0.67
ACGTcount: A:0.42, C:0.01, G:0.33, T:0.24
Consensus pattern (52 bp):
GGAAGTAAAACTTTGGGAGAAAAAGTAAAAGGAAAAAAGTTTTGGGGTTTGA
Found at i:60808116 original size:74 final size:73
Alignment explanation
Indices: 60807979--60808119 Score: 187
Period size: 74 Copynumber: 1.9 Consensus size: 73
60807969 TAAACTTTTA
* * * * *
60807979 GGGAGAAAGTAAAAGAGAAAAAGTTTTGGGATTTGGGGGAAGTAAAATTTTTGAGGGGGAAGTAA
1 GGGAAAAAGTAAAAGAGAAAAAGTTTTGGGATTTGGGAGAAGTAAAATTTTGGAGGAGAAAGTAA
60808044 AAGTTTGG
66 AAGTTTGG
*
60808052 GGGAAAAAGTAAAAG-GAAAAAAGTTTTGAGGGTTTGGGAGAAGTAAAACTTTTGGA-GAGAAAG
1 GGGAAAAAGTAAAAGAG-AAAAAGTTTTG-GGATTTGGGAGAAGTAAAA-TTTTGGAGGAGAAAG
60808115 TAAAA
63 TAAAA
60808120 TGTAAAAGGT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
72 1 0.02
73 25 0.42
74 27 0.46
75 6 0.10
ACGTcount: A:0.43, C:0.01, G:0.34, T:0.23
Consensus pattern (73 bp):
GGGAAAAAGTAAAAGAGAAAAAGTTTTGGGATTTGGGAGAAGTAAAATTTTGGAGGAGAAAGTAA
AAGTTTGG
Found at i:60808168 original size:52 final size:51
Alignment explanation
Indices: 60808036--60808172 Score: 141
Period size: 54 Copynumber: 2.6 Consensus size: 51
60808026 TTTTTGAGGG
* * *
60808036 GGAAGTAAAAGTTTGGGGGAAAAAGTAAAAGGAAAAAAGTTTTGAGGGTTTGG
1 GGAAGTAAAAATTT-GGGG-AAAAGTAAAATGAAAAAAGTTTTGAGGGTTTGA
* * * *
60808089 GAGAAGTAAAACTTTTGGAGAGAAAGTAAAATGTAAAAGGTTTTG-GGGTTTGA
1 G-GAAGTAAAA-ATTTGGGGA-AAAGTAAAATGAAAAAAGTTTTGAGGGTTTGA
60808142 GGAAGTAAAAATTTAGAGGGAAAAGTAAAAT
1 GGAAGTAAAAATTT-G-GGGAAAAGTAAAAT
60808173 TTAACTTAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
51 3 0.04
52 20 0.28
53 13 0.18
54 32 0.45
55 3 0.04
ACGTcount: A:0.44, C:0.01, G:0.31, T:0.24
Consensus pattern (51 bp):
GGAAGTAAAAATTTGGGGAAAAGTAAAATGAAAAAAGTTTTGAGGGTTTGA
Found at i:60811238 original size:25 final size:26
Alignment explanation
Indices: 60811189--60811238 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
60811179 ATAAATTTTC
60811189 TCAAAATTTTATCGGGGGTAAAATTA
1 TCAAAATTTTATCGGGGGTAAAATTA
**
60811215 TCAAAATTTTA-CTTGGGTAAAATT
1 TCAAAATTTTATCGGGGGTAAAATT
60811239 GAGGTGAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (26 bp):
TCAAAATTTTATCGGGGGTAAAATTA
Found at i:60820038 original size:14 final size:15
Alignment explanation
Indices: 60820012--60820041 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
60820002 TGTATATTTT
60820012 TTAGAGTTTCTGTTA
1 TTAGAGTTTCTGTTA
60820027 TTAGAG-TTCTGTTA
1 TTAGAGTTTCTGTTA
60820041 T
1 T
60820042 AATTTAGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53
Consensus pattern (15 bp):
TTAGAGTTTCTGTTA
Found at i:60820243 original size:25 final size:25
Alignment explanation
Indices: 60820177--60820244 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
60820167 TCAGTAATAC
* * *
60820177 ATATGAATTAAGTGTTAAATGAAAT
1 ATATGAATTAAGTGTTTAATCAAAG
* * *
60820202 ATATAAATTAATTGTTTAATCAAGG
1 ATATGAATTAAGTGTTTAATCAAAG
60820227 ATATGAATTAAGTGTTTA
1 ATATGAATTAAGTGTTTA
60820245 TGTTATGTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.44, C:0.01, G:0.15, T:0.40
Consensus pattern (25 bp):
ATATGAATTAAGTGTTTAATCAAAG
Found at i:60821905 original size:28 final size:29
Alignment explanation
Indices: 60821841--60821911 Score: 85
Period size: 27 Copynumber: 2.6 Consensus size: 29
60821831 CTGGAAGGGT
*
60821841 AAGCCTTTGTGGTGA-ACCTCTTAAAAGA
1 AAGCCTTTGTGGTGAGACCTCTGAAAAGA
* * *
60821869 CA-CCTTTGTGTTGAGA-CTCTGAAAGGA
1 AAGCCTTTGTGGTGAGACCTCTGAAAAGA
60821896 AAGCCTTTGTGGTGAG
1 AAGCCTTTGTGGTGAG
60821912 TACTGAATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
27 21 0.60
28 14 0.40
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (29 bp):
AAGCCTTTGTGGTGAGACCTCTGAAAAGA
Found at i:60827743 original size:5 final size:5
Alignment explanation
Indices: 60827733--60827775 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
60827723 TTATTTCTTT
* * * *
60827733 TATAA TATAA TATAT TATAA TCTAA TCTAA TCTAA TATAA TAT
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TAT
60827776 TTATACTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:60827752 original size:15 final size:15
Alignment explanation
Indices: 60827732--60827780 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
60827722 TTTATTTCTT
60827732 TTATAATATAATATA
1 TTATAATATAATATA
* *
60827747 TTATAATCTAATCTA
1 TTATAATATAATATA
* *
60827762 ATCTAATATAATAT-
1 TTATAATATAATATA
60827776 TTATA
1 TTATA
60827781 CTTAACTTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
14 3 0.12
15 23 0.88
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATAATATAATATA
Found at i:60838995 original size:19 final size:19
Alignment explanation
Indices: 60838960--60838999 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
60838950 ATCTACAAGA
*
60838960 TAAATATTAAATTTAATAT
1 TAAATATTAAATATAATAT
60838979 TAAACTATTAAA-ATAATAT
1 TAAA-TATTAAATATAATAT
60838998 TA
1 TA
60839000 TTTTTGGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAATATTAAATATAATAT
Found at i:60841947 original size:15 final size:15
Alignment explanation
Indices: 60841902--60841948 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
60841892 AGATATTGTT
60841902 TATTAAATTAATTTT-
1 TATTAAA-TAATTTTC
* *
60841917 AATTAATTAATTTTTC
1 TATTAAATAA-TTTTC
60841933 TATTAAATAATTTTC
1 TATTAAATAATTTTC
60841948 T
1 T
60841949 CAACTCAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 3 0.12
15 15 0.58
16 8 0.31
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTAAATAATTTTC
Found at i:60847933 original size:15 final size:15
Alignment explanation
Indices: 60847913--60847951 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
60847903 TGCTTTGGAG
60847913 GATATTCTTGTTCAT
1 GATATTCTTGTTCAT
*
60847928 GATATTC-TGTTGAT
1 GATATTCTTGTTCAT
*
60847942 TATATTCTTG
1 GATATTCTTG
60847952 AAACTTGCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (15 bp):
GATATTCTTGTTCAT
Found at i:60851261 original size:13 final size:13
Alignment explanation
Indices: 60851243--60851306 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
60851233 AGTTCTTCAT
*
60851243 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
60851256 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
*
60851269 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
60851282 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
* *
60851295 TACTTTTAAGAA
1 TGCTTTTCAGAA
60851307 ATTTGAGTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (13 bp):
TGCTTTTCAGAAG
Found at i:60851273 original size:26 final size:26
Alignment explanation
Indices: 60851243--60851306 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
60851233 AGTTCTTCAT
60851243 TGCTTTTGAGAAGTGCTTTTCAGAAG
1 TGCTTTTGAGAAGTGCTTTTCAGAAG
60851269 TGCTTTTGAGAAGTGCTTTTCAGAAG
1 TGCTTTTGAGAAGTGCTTTTCAGAAG
* *
60851295 TACTTTTAAGAA
1 TGCTTTTGAGAA
60851307 ATTTGAGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (26 bp):
TGCTTTTGAGAAGTGCTTTTCAGAAG
Found at i:60851697 original size:64 final size:64
Alignment explanation
Indices: 60851596--60851854 Score: 509
Period size: 64 Copynumber: 4.0 Consensus size: 64
60851586 NNNACATGCC
*
60851596 AAATTAGTGGACAGTCCACATCATTAACACTGCATACTGTTTTAAGATGAACAAGAATGGAACT
1 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTGTTTTAAGATGAACAAGAATGGAACT
60851660 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTGTTTTAAGATGAACAAGAATGGAACT
1 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTGTTTTAAGATGAACAAGAATGGAACT
60851724 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTGTTTTAAGATGAACAAGAATGGAACT
1 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTGTTTTAAGATGAACAAGAATGGAACT
60851788 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTGTTTTAAGATGAACAAGAATGGAACT
1 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTGTTTTAAGATGAACAAGAATGGAACT
60851852 AAA
1 AAA
60851855 GTGTCTACCG
Statistics
Matches: 194, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 194 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (64 bp):
AAATTAGTGGACAGTCCACATCATTAACATTGCATACTGTTTTAAGATGAACAAGAATGGAACT
Found at i:60857156 original size:6 final size:6
Alignment explanation
Indices: 60857145--60857176 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
60857135 CAGTCTCTAA
60857145 GTCATT GTCATT GTCATT GTCATT GTCATT GT
1 GTCATT GTCATT GTCATT GTCATT GTCATT GT
60857177 TTACTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.50
Consensus pattern (6 bp):
GTCATT
Found at i:60858435 original size:54 final size:54
Alignment explanation
Indices: 60858371--60858479 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
60858361 GAATCTAGAT
60858371 GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
1 GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
60858425 GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
1 GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
60858479 G
1 G
60858480 AAGGGAAAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.29
Consensus pattern (54 bp):
GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
Found at i:60864304 original size:4 final size:4
Alignment explanation
Indices: 60864295--60864345 Score: 59
Period size: 4 Copynumber: 12.8 Consensus size: 4
60864285 TAAGAACAGA
* * *
60864295 GTAT GTAT GTAT GCT-T GTAT GTAT GCAT GTAG GTAT GCAT GTAT GTAT
1 GTAT GTAT GTAT G-TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
60864343 GTA
1 GTA
60864346 CATGATTCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 1 0.03
4 37 0.95
5 1 0.03
ACGTcount: A:0.24, C:0.06, G:0.27, T:0.43
Consensus pattern (4 bp):
GTAT
Found at i:60864315 original size:12 final size:12
Alignment explanation
Indices: 60864297--60864343 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
60864287 AGAACAGAGT
60864297 ATGTATGTATGC
1 ATGTATGTATGC
*
60864309 TTGTATGTATGC
1 ATGTATGTATGC
*
60864321 ATGTAGGTATGC
1 ATGTATGTATGC
60864333 ATGTATGTATG
1 ATGTATGTATG
60864344 TACATGATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.23, C:0.06, G:0.28, T:0.43
Consensus pattern (12 bp):
ATGTATGTATGC
Found at i:60865651 original size:62 final size:62
Alignment explanation
Indices: 60865554--60865676 Score: 246
Period size: 62 Copynumber: 2.0 Consensus size: 62
60865544 TTGGCCTTGG
60865554 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
1 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
60865616 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTT
1 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTT
60865677 GGATCCTATG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (62 bp):
GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
Found at i:60868656 original size:109 final size:109
Alignment explanation
Indices: 60868458--60869058 Score: 639
Period size: 109 Copynumber: 5.5 Consensus size: 109
60868448 CTTGTTGAAG
* * *
60868458 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCAAATTGTTAGAAAATCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATTGTAAATTAGCGAACTGTTAGAAAATCGAAGG
* ** **
60868523 TCGTGATTGTAAATTAACGGATCGTAAGAATAAACTGTGATAAT
66 TTGTGATTGTAAATTAACGGATCGTAAGAATAAACCATGATCGT
* * * * * ** *
60868567 AAATCAACGAACTTTAAAAATGACAGTCGTGGTTGTTACTCAGAAAACTGTTAGAAAATCGAAGA
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATTGTAAATTAGCGAACTGTTAGAAAATCGAAGG
* * *
60868632 TTGTGATTGTAAATCAACGAATCGTAAGAATAAACCGTGATCGT
66 TTGTGATTGTAAATTAACGGATCGTAAGAATAAACCATGATCGT
** * ** * * *
60868676 AAATCAGTGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCGGGCTATTAGAAAACCGAAAG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATTGTAAATTAGCGAACTGTTAGAAAATCGAAGG
** * * * ** *
60868741 TCATGATCGTAAATCAGA-GGACCGTAAGAATAAGTCATGATTGT
66 TTGTGATTGTAAATTA-ACGGATCGTAAGAATAAACCATGATCGT
* * *
60868785 AAATCAACGAGCTTTAAAAATGACAGTTGTGATTGTAAATCAGCGAACTGTTAGAAAATTGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATTGTAAATTAGCGAACTGTTAGAAAATCGAAGG
* * * *
60868850 TTGTGATTGTAAATTAGCGG-GCTGTAAGAATAAGCCATGATTGT
66 TTGTGATTGTAAATTAACGGATC-GTAAGAATAAACCATGATCGT
* * ** * *
60868894 AAATCAACGAGCTTTAAAAATGATATTCGTGATTGTAAATTAATGAACTTTTAGAAAACCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATTGTAAATTAGCGAACTGTTAGAAAATCGAAGG
** ** *
60868959 TTGTGATAATAAATTAGTGGATCGTAAGAATAAGCCATGATCGT
66 TTGTGATTGTAAATTAACGGATCGTAAGAATAAACCATGATCGT
* * * * * *
60869003 AAATCAACAAGCTTTAAAAATGACAATCGTGATCGTAAATCAGTGAACTGTAAGAA
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATTGTAAATTAGCGAACTGTTAGAA
60869059 TAAGTCGTGA
Statistics
Matches: 408, Mismatches: 80, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
108 1 0.00
109 405 0.99
110 2 0.00
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (109 bp):
AAATCAACGAGCTTTAAAAATGACAGTCGTGATTGTAAATTAGCGAACTGTTAGAAAATCGAAGG
TTGTGATTGTAAATTAACGGATCGTAAGAATAAACCATGATCGT
Found at i:60868854 original size:39 final size:36
Alignment explanation
Indices: 60868566--60868933 Score: 135
Period size: 34 Copynumber: 10.1 Consensus size: 36
60868556 ACTGTGATAA
* * *
60868566 TAAATCAACGAACTTTAAAAATGACAGTCGTGGTTG
1 TAAATCAGCGAACTTTAAAAATGACAGTTGTGATTG
* * **
60868602 TTACTCAGAAAACTGTTAGAAAATCGA-AGATTGTGATTG
1 TAAATCAGCGAACT-TTA-AAAAT-GACAG-TTGTGATTG
* * * *** *
60868641 TAAATCAACGAA-TCGTAAGAAT-A-AACCGTGATCG
1 TAAATCAGCGAACT-TTAAAAATGACAGTTGTGATTG
* * * *
60868675 TAAATCAGTGAGCTTTAAAAATGACAGTCGTGATCG
1 TAAATCAGCGAACTTTAAAAATGACAGTTGTGATTG
* ** * * ** *
60868711 TAAATTAGCGGGCTATTAGAAAACCGAAAGTCATGATCG
1 TAAATCAGCGAACT-TTA-AAAA-TGACAGTTGTGATTG
* * ** * **
60868750 TAAATCAGAGGACCGTAAGAAT-A-AGTCATGATTG
1 TAAATCAGCGAACTTTAAAAATGACAGTTGTGATTG
* *
60868784 TAAATCAACGAGCTTTAAAAATGACAGTTGTGATTG
1 TAAATCAGCGAACTTTAAAAATGACAGTTGTGATTG
60868820 TAAATCAGCGAACTGTTAGAAAATTGA-AGGTTGTGATTG
1 TAAATCAGCGAACT-TTA-AAAA-TGACA-GTTGTGATTG
* ** * * ***
60868859 TAAATTAGCGGGCTGTAAGAAT-A-AGCCATGATTG
1 TAAATCAGCGAACTTTAAAAATGACAGTTGTGATTG
* * *
60868893 TAAATCAACGAGCTTTAAAAATGATA-TTCGTGATTG
1 TAAATCAGCGAACTTTAAAAATGACAGTT-GTGATTG
60868929 TAAAT
1 TAAAT
60868934 TAATGAACTT
Statistics
Matches: 246, Mismatches: 67, Indels: 38
0.70 0.19 0.11
Matches are distributed among these distances:
34 70 0.28
35 9 0.04
36 63 0.26
37 19 0.08
38 23 0.09
39 62 0.25
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (36 bp):
TAAATCAGCGAACTTTAAAAATGACAGTTGTGATTG
Found at i:60868856 original size:218 final size:219
Alignment explanation
Indices: 60868458--60869082 Score: 710
Period size: 218 Copynumber: 2.9 Consensus size: 219
60868448 CTTGTTGAAG
* * * *
60868458 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCAAATTGTTAGAAAATCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCGAACTATTAGAAAACCGAAGG
* * * *
60868523 TCGTGATTGTAAATTA-ACGGATCGTAAGAATAA-ACTGTGATAATAAATCAACGAACTTTAAAA
66 TCGTGATAGTAAATTAGA-GGATCGTAAGAATAAGAC-ATGATAGTAAATCAACGAGCTTTAAAA
* * * * * *
60868586 ATGACAGTCGTGGTTGTTACTCAGAAAACTGTTAGAAAATCGAAGATTGTGATTGTAAATCAACG
129 ATGACAGTCGTGATTGTAAATCAGAGAACTGTTAGAAAATTGAAGGTTGTGATTGTAAATCAACG
* *
60868651 AATC-GTAAGAATAAACCGTGATCGT
194 AAGCTGTAAGAATAAACCATGATCGT
** ** *
60868676 AAATCAGTGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCGGGCTATTAGAAAACCGAAAG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCGAACTATTAGAAAACCGAAGG
* * * * * *
60868741 TCATGATCGTAAATCAGAGGACCGTAAGAATAAGTCATGATTGTAAATCAACGAGCTTTAAAAAT
66 TCGTGATAGTAAATTAGAGGATCGTAAGAATAAGACATGATAGTAAATCAACGAGCTTTAAAAAT
* * * * *
60868806 GACAGTTGTGATTGTAAATCAGCGAACTGTTAGAAAATTGAAGGTTGTGATTGTAAATTAGCG-G
131 GACAGTCGTGATTGTAAATCAGAGAACTGTTAGAAAATTGAAGGTTGTGATTGTAAATCAACGAA
* *
60868870 GCTGTAAGAATAAGCCATGATTGT
196 GCTGTAAGAATAAACCATGATCGT
* * * ** *
60868894 AAATCAACGAGCTTTAAAAATGATATTCGTGATTGTAAATTAATGAACTTTTAGAAAACCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCGAACTATTAGAAAACCGAAGG
* * * * * *
60868959 TTGTGATAATAAATTAGTGGATCGTAAGAATAAGCCATGATCGTAAATCAACAAGCTTTAAAAAT
66 TCGTGATAGTAAATTAGAGGATCGTAAGAATAAGACATGATAGTAAATCAACGAGCTTTAAAAAT
* * * * *
60869024 GACAATCGTGATCGTAAATCAGTGAACTG-TA-AGAA-T-AA-GTCGTGATTGTAAATCAACGA
131 GACAGTCGTGATTGTAAATCAGAGAACTGTTAGAAAATTGAAGGTTGTGATTGTAAATCAACGA
60869083 GTTTTAAAAA
Statistics
Matches: 341, Mismatches: 62, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
213 17 0.05
214 2 0.01
215 1 0.00
216 3 0.01
217 3 0.01
218 313 0.92
219 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (219 bp):
AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCGAACTATTAGAAAACCGAAGG
TCGTGATAGTAAATTAGAGGATCGTAAGAATAAGACATGATAGTAAATCAACGAGCTTTAAAAAT
GACAGTCGTGATTGTAAATCAGAGAACTGTTAGAAAATTGAAGGTTGTGATTGTAAATCAACGAA
GCTGTAAGAATAAACCATGATCGT
Found at i:60871371 original size:36 final size:39
Alignment explanation
Indices: 60871319--60871413 Score: 106
Period size: 36 Copynumber: 2.5 Consensus size: 39
60871309 CAGTAAGAAT
* * *
60871319 AAGTTGTGATCGTAAATCAGTGAGCT-TTA-AAAA-TGA
1 AAGTCGTGATCGTAAATCAGCGAGCTATTAGAAAACCGA
* * *
60871355 CAGTCGTGATCGTAAATTAGCGGGCTATTAGAAAACCGA
1 AAGTCGTGATCGTAAATCAGCGAGCTATTAGAAAACCGA
*
60871394 AAGTCATGATCGTAAATCAG
1 AAGTCGTGATCGTAAATCAG
60871414 AGGACCGTAA
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
36 21 0.45
37 3 0.06
38 4 0.09
39 19 0.40
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (39 bp):
AAGTCGTGATCGTAAATCAGCGAGCTATTAGAAAACCGA
Found at i:60874618 original size:11 final size:11
Alignment explanation
Indices: 60874602--60874629 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
60874592 CATAGTTGGT
60874602 ATCGATACTGA
1 ATCGATACTGA
60874613 ATCGATACTGA
1 ATCGATACTGA
60874624 ATCGAT
1 ATCGAT
60874630 GCTTTATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (11 bp):
ATCGATACTGA
Found at i:60879182 original size:27 final size:29
Alignment explanation
Indices: 60879136--60879205 Score: 110
Period size: 28 Copynumber: 2.5 Consensus size: 29
60879126 AAATTAAAAA
*
60879136 TTACCAAAATGT-TATAAATT-TTTTTAT
1 TTACCAAAATATATATAAATTATTTTTAT
60879163 TTACCAAAATATATAT-AATTATTTTTAT
1 TTACCAAAATATATATAAATTATTTTTAT
60879191 TTACCAAAATATATA
1 TTACCAAAATATATA
60879206 AAAAAAACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 15 0.38
28 25 0.62
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.47
Consensus pattern (29 bp):
TTACCAAAATATATATAAATTATTTTTAT
Found at i:60879291 original size:27 final size:27
Alignment explanation
Indices: 60879250--60879356 Score: 169
Period size: 27 Copynumber: 4.0 Consensus size: 27
60879240 ACTCCCTGGG
*
60879250 ACAAGGGAACACTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
60879277 ACAAGGGAACCCTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
**
60879304 ACAAGGGTTCCCTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
**
60879331 ACAAGGGTTCCCTGTTGGCGGCACCA
1 ACAAGGGAACCCTGTTGGCGGCACCA
60879357 CTCGTGTTAT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.26, C:0.29, G:0.30, T:0.15
Consensus pattern (27 bp):
ACAAGGGAACCCTGTTGGCGGCACCAA
Found at i:60883084 original size:31 final size:32
Alignment explanation
Indices: 60883032--60883181 Score: 92
Period size: 38 Copynumber: 4.3 Consensus size: 32
60883022 AATACCTTAT
60883032 TTTCTTTTTTTTCCTTCCTT-CCCTCTT-CTTCTTC
1 TTTCTTTTTTTT-C-TCCTTCCCCT-TTCCTT-TTC
60883066 TTTCTTTTTTTTCT-CTTCCCCTTTCCTTTTC
1 TTTCTTTTTTTTCTCCTTCCCCTTTCCTTTTC
60883097 TTTCCTTATTTTTCTTTCTTTCC-TCCCCTTTCCTTTTC
1 TTT-C---TTTTT-TTTC--TCCTTCCCCTTTCCTTTTC
* *
60883135 TTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCCTTTTC
1 TTT-CTT-TTTTT-TCTCCTT-C-C-CCTTTCCTTTTC
*
60883173 CTTCTTTTT
1 TTTCTTTTT
60883182 CTTGCTTCCT
Statistics
Matches: 97, Mismatches: 3, Indels: 30
0.75 0.02 0.23
Matches are distributed among these distances:
31 11 0.11
32 9 0.09
33 1 0.01
34 14 0.14
35 10 0.10
36 12 0.12
37 4 0.04
38 35 0.36
39 1 0.01
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (32 bp):
TTTCTTTTTTTTCTCCTTCCCCTTTCCTTTTC
Found at i:60883114 original size:18 final size:18
Alignment explanation
Indices: 60883093--60883203 Score: 86
Period size: 18 Copynumber: 6.1 Consensus size: 18
60883083 CCCCTTTCCT
*
60883093 TTTCTTTCCTTATTTTTC
1 TTTCTTTCCTTCTTTTTC
* * *
60883111 TTTCTTTCCTCCCCTTTCC
1 TTTCTTTCCT-TCTTTTTC
60883130 TTTTCTTTCCTTCTTTTTC
1 -TTTCTTTCCTTCTTTTTC
*
60883149 TTTCTTTCC-TCTCCTTTC
1 TTTCTTTCCTTCT-TTTTC
*
60883167 -CT-TTTCCTTCTTTTTC
1 TTTCTTTCCTTCTTTTTC
*
60883183 TTGC-TTCCTTTCTTTCTTC
1 TTTCTTTCC-TTCTTT-TTC
60883202 TT
1 TT
60883204 CTTCCCCTCT
Statistics
Matches: 73, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
16 9 0.12
17 11 0.15
18 29 0.40
19 14 0.19
20 10 0.14
ACGTcount: A:0.01, C:0.32, G:0.01, T:0.66
Consensus pattern (18 bp):
TTTCTTTCCTTCTTTTTC
Found at i:60883155 original size:28 final size:28
Alignment explanation
Indices: 60883124--60883203 Score: 76
Period size: 34 Copynumber: 2.8 Consensus size: 28
60883114 CTTTCCTCCC
*
60883124 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
1 CTTTCCTTTTCTTTCCTTCTTTTTCTTG
60883152 CTTTCCTCTCCTTTCCTTTTCCTTCTTTTTCTTG
1 CTTT-C-CT--TTT-C-TTTCCTTCTTTTTCTTG
60883186 C-TTCC-TTTCTTT-CTTCTT
1 CTTTCCTTTTCTTTCCTTCTT
60883204 CTTCCCCTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 15
0.74 0.02 0.25
Matches are distributed among these distances:
25 6 0.13
26 3 0.07
27 1 0.02
28 7 0.16
29 1 0.02
30 2 0.04
31 1 0.02
32 4 0.09
33 3 0.07
34 17 0.38
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.66
Consensus pattern (28 bp):
CTTTCCTTTTCTTTCCTTCTTTTTCTTG
Found at i:60883194 original size:38 final size:38
Alignment explanation
Indices: 60883082--60883172 Score: 164
Period size: 38 Copynumber: 2.4 Consensus size: 38
60883072 TTTTTTCTCT
60883082 TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
1 TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
*
60883120 TCCCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
*
60883158 TCTCCTTTCCTTTTC
1 TCCCCTTTCCTTTTC
60883173 CTTCTTTTTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.01, C:0.36, G:0.00, T:0.63
Consensus pattern (38 bp):
TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
Found at i:60883199 original size:22 final size:23
Alignment explanation
Indices: 60883164--60883206 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
60883154 TTCCTCTCCT
*
60883164 TTCCTTTTCCTTCTTTTTCTTGC
1 TTCCTTTTCCTTCTTCTTCTTGC
*
60883187 TTCC-TTTCTTTCTTCTTCTT
1 TTCCTTTTCCTTCTTCTTCTT
60883207 CCCCTCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.00, C:0.30, G:0.02, T:0.67
Consensus pattern (23 bp):
TTCCTTTTCCTTCTTCTTCTTGC
Found at i:60883204 original size:28 final size:30
Alignment explanation
Indices: 60883126--60883207 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 30
60883116 TTCCTCCCCT
*
60883126 TTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TTCC-TTTCTTT-CTTCTTCTTCTTTCTTTCC
* *
60883158 TCTCCTTTCCTTT-TCCTTCTT-TTTC-TTGC
1 T-TCCTTT-CTTTCTTCTTCTTCTTTCTTTCC
60883187 TTCCTTTCTTTCTTCTTCTTC
1 TTCCTTTCTTTCTTCTTCTTC
60883208 CCCTCTCCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
27 4 0.10
28 13 0.31
29 4 0.10
30 4 0.10
31 6 0.14
32 4 0.10
33 7 0.17
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.66
Consensus pattern (30 bp):
TTCCTTTCTTTCTTCTTCTTCTTTCTTTCC
Found at i:60883371 original size:12 final size:12
Alignment explanation
Indices: 60883334--60883371 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
60883324 ATCAGTCCAG
*
60883334 TTTTTTTCTGTT
1 TTTTTTTTTGTT
60883346 TTTTTTTTTGTT
1 TTTTTTTTTGTT
60883358 TTTTTGTTTT-TT
1 TTTTT-TTTTGTT
60883370 TT
1 TT
60883372 ATATATTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 20 0.83
13 4 0.17
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (12 bp):
TTTTTTTTTGTT
Found at i:60883401 original size:27 final size:26
Alignment explanation
Indices: 60883369--60883439 Score: 115
Period size: 27 Copynumber: 2.7 Consensus size: 26
60883359 TTTTGTTTTT
60883369 TTTATATATTTTGGTAAATAAAAAAA
1 TTTATATATTTTGGTAAATAAAAAAA
60883395 TTATATATATTTTGGTAAATAAAAAAA
1 TT-TATATATTTTGGTAAATAAAAAAA
*
60883422 TTTATAACATTTTGGTAA
1 TTTAT-ATATTTTGGTAA
60883440 TTTTTAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 5 0.12
27 37 0.88
ACGTcount: A:0.46, C:0.01, G:0.08, T:0.44
Consensus pattern (26 bp):
TTTATATATTTTGGTAAATAAAAAAA
Found at i:60885584 original size:2 final size:2
Alignment explanation
Indices: 60885577--60885604 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
60885567 TACCATGCAA
60885577 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60885605 TTATCAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60896631 original size:21 final size:22
Alignment explanation
Indices: 60896593--60896637 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
60896583 ATTTTAGTTT
60896593 TTCTAGTAAAAAGAAAAAAATA
1 TTCTAGTAAAAAGAAAAAAATA
60896615 TTCTAGTAAAAAGAAAAAAATA
1 TTCTAGTAAAAAGAAAAAAATA
60896637 T
1 T
60896638 GGATTTTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.62, C:0.04, G:0.09, T:0.24
Consensus pattern (22 bp):
TTCTAGTAAAAAGAAAAAAATA
Found at i:60896916 original size:21 final size:22
Alignment explanation
Indices: 60896879--60896922 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
60896869 CTTAGTTTCC
60896879 TCAAGGAAAAATCAAGTT-TTT
1 TCAAGGAAAAATCAAGTTATTT
*
60896900 TCAA-GAAAAACTTAAGTTATTT
1 TCAAGGAAAAA-TCAAGTTATTT
60896922 T
1 T
60896923 TTTTATAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
21 10 0.50
22 4 0.20
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (22 bp):
TCAAGGAAAAATCAAGTTATTT
Found at i:60898730 original size:73 final size:68
Alignment explanation
Indices: 60898596--60898730 Score: 162
Period size: 68 Copynumber: 1.9 Consensus size: 68
60898586 TTTAATAGAT
* * **
60898596 TTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTTTATTAATCTAATATTAAAGTGGTT
1 TTAATATTAAATTAAATTTAATACTTATCTTAATAATATTAGATTAATCTAATATTAAAGTGGTT
60898661 ATC
66 ATC
** *
60898664 TTAATATTAAATTAAATTTAATGTTTATCTTGTAGATAAATATTAGATTAAATTTAATATTAAAG
1 TTAATATTAAATTAAATTTAATACTTATC-T-TA-AT-AATATTAGATT-AATCTAATATTAAAG
60898729 TG
61 TG
60898731 ATTAAGTTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
68 26 0.47
69 1 0.02
70 2 0.04
71 2 0.04
72 8 0.15
73 16 0.29
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (68 bp):
TTAATATTAAATTAAATTTAATACTTATCTTAATAATATTAGATTAATCTAATATTAAAGTGGTT
ATC
Found at i:60904631 original size:17 final size:18
Alignment explanation
Indices: 60904598--60904632 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
60904588 TAGTTCAACT
*
60904598 CACAATCAAACATACAAA
1 CACAATCAAAAATACAAA
60904616 CACAAT-AAAAATACAAA
1 CACAATCAAAAATACAAA
60904633 AAAATTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.23, G:0.00, T:0.11
Consensus pattern (18 bp):
CACAATCAAAAATACAAA
Found at i:60908627 original size:22 final size:22
Alignment explanation
Indices: 60908614--60908676 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 22
60908604 TTGTTTTGAT
60908614 ATTGTTCTTGATTTGTTCTGGAA
1 ATTGTT-TTGATTTGTTCTGGAA
*
60908637 ATTGTTTTGA-TAGTCTGCTGGAA
1 ATTGTTTTGATTTGT-T-CTGGAA
60908660 ATTGTTCTTGATTTGTT
1 ATTGTT-TTGATTTGTT
60908677 AGTGAGTAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 3 0.09
22 5 0.15
23 18 0.53
24 5 0.15
25 3 0.09
ACGTcount: A:0.17, C:0.08, G:0.22, T:0.52
Consensus pattern (22 bp):
ATTGTTTTGATTTGTTCTGGAA
Found at i:60928755 original size:12 final size:12
Alignment explanation
Indices: 60928735--60928770 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
60928725 CCATGTCTCG
60928735 AGCGTACAATAA
1 AGCGTACAATAA
*
60928747 AGTGTACAATAA
1 AGCGTACAATAA
60928759 AGCGTACAATAA
1 AGCGTACAATAA
60928771 GTTTGAGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (12 bp):
AGCGTACAATAA
Found at i:60937871 original size:18 final size:18
Alignment explanation
Indices: 60937837--60937878 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
60937827 AAATTTTTTT
*
60937837 TTTTATTTTATTAATTAC
1 TTTTAATTTATTAATTAC
*
60937855 TTTTAATTT-TTAGATTAT
1 TTTTAATTTATTA-ATTAC
60937873 TTTTAA
1 TTTTAA
60937879 ATTTCTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTAATTTATTAATTAC
Found at i:60938506 original size:93 final size:92
Alignment explanation
Indices: 60938394--60938569 Score: 244
Period size: 93 Copynumber: 1.9 Consensus size: 92
60938384 TAAGCCCCTC
* * *
60938394 CTTTTTTTTTGCACTCAATTGAGCACATGAGCTTTCAAAATGTATCAAAAAGACCCTCAAACTTA
1 CTTTTTTTTTGCACTCAATTGAGCACATGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATT-
60938459 TTAAAAAAAAGCAATTAAGTCATTACTT
65 TTAAAAAAAAGCAATTAAGTCATTACTT
* * * * *
60938487 CTTTTTTTTTTCACTCAATTGGGTACTTGAACTTTTAAAATGCATCAAAAAGACCCTCAAAATTT
1 CTTTTTTTTTGCACTCAATTGAGCACATGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATTT
** *
60938552 TTTAAAACAGCAATTAAG
66 TAAAAAAAAGCAATTAAG
60938570 CCCCTACTCT
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
92 16 0.22
93 56 0.78
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.35
Consensus pattern (92 bp):
CTTTTTTTTTGCACTCAATTGAGCACATGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATTT
TAAAAAAAAGCAATTAAGTCATTACTT
Found at i:60938639 original size:36 final size:34
Alignment explanation
Indices: 60938585--60938657 Score: 92
Period size: 36 Copynumber: 2.1 Consensus size: 34
60938575 ACTCTTACTA
*
60938585 AAATTATAAAAAATTAAAAAGTAGAAAATTTATT
1 AAATTATAAAAAATTAAAAAATAGAAAATTTATT
* **
60938619 AAATTTTAATAAAATTTAAAAAATTTAAAATTTATT
1 AAATTATAA-AAAA-TTAAAAAATAGAAAATTTATT
60938655 AAA
1 AAA
60938658 AATTATAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 8 0.24
35 4 0.12
36 21 0.64
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (34 bp):
AAATTATAAAAAATTAAAAAATAGAAAATTTATT
Found at i:60939228 original size:86 final size:88
Alignment explanation
Indices: 60939082--60939274 Score: 295
Period size: 86 Copynumber: 2.2 Consensus size: 88
60939072 ATAAAAGCAT
* *
60939082 GGGG-TTAATTGCTTTTTTTGAAAATTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTAC
1 GGGGCTTAATTGCTTTTTTTGAAAATTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTAC
*
60939146 CCAATTGAGTGCAAAAAAAAAGTA
66 CCAAATGAGTG-AAAAAAAAAGTA
* *
60939170 GGGGCTTAATTGCATTTTTT-AAGA-TTTGAGGGCCTTTTT-ATGCATTTTAAAAGTTCAAGTAC
1 GGGGCTTAATTGCTTTTTTTGAAAATTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTAC
*
60939232 CCAAATGAGTGGAAAAAAAAGTA
66 CCAAATGAGTGAAAAAAAAAGTA
60939255 GGGGCTTAATTGCTTTTTTT
1 GGGGCTTAATTGCTTTTTTT
60939275 TTTTTTAAGT
Statistics
Matches: 97, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
85 30 0.31
86 32 0.33
87 14 0.14
88 7 0.07
89 14 0.14
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.38
Consensus pattern (88 bp):
GGGGCTTAATTGCTTTTTTTGAAAATTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTAC
CCAAATGAGTGAAAAAAAAAGTA
Found at i:60939902 original size:9 final size:9
Alignment explanation
Indices: 60939867--60939934 Score: 68
Period size: 9 Copynumber: 7.6 Consensus size: 9
60939857 ACTATATAAA
60939867 ATTTTATAT
1 ATTTTATAT
*
60939876 ATTTCATAT
1 ATTTTATAT
60939885 ATTTCTATAT
1 ATTT-TATAT
60939895 ATTTTATA-
1 ATTTTATAT
* *
60939903 ATTTTTTAAG
1 ATTTTAT-AT
60939913 ATTTT-TAT
1 ATTTTATAT
*
60939921 ATTTTTTAT
1 ATTTTATAT
60939930 ATTTT
1 ATTTT
60939935 TTGCGATTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
8 12 0.24
9 26 0.51
10 13 0.25
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (9 bp):
ATTTTATAT
Found at i:60939935 original size:9 final size:9
Alignment explanation
Indices: 60939868--60939982 Score: 65
Period size: 9 Copynumber: 12.4 Consensus size: 9
60939858 CTATATAAAA
*
60939868 TTTTATATA
1 TTTTATATT
*
60939877 TTTCATATAT
1 TTTTATAT-T
* *
60939887 TTCTATATA
1 TTTTATATT
60939896 TTTTATAATT
1 TTTTAT-ATT
*
60939906 TTTTA-AGAT
1 TTTTATA-TT
60939915 TTTTATATT
1 TTTTATATT
60939924 TTTTATATT
1 TTTTATATT
**
60939933 TTTTGCGATT
1 TTTT-ATATT
* **
60939943 ATTTATAGC
1 TTTTATATT
60939952 TTTTAT-TGT
1 TTTTATAT-T
60939961 TTTTA-ATT
1 TTTTATATT
60939969 TTTTATAATT
1 TTTTAT-ATT
60939979 TTTT
1 TTTT
60939983 TTCTTATTTT
Statistics
Matches: 78, Mismatches: 19, Indels: 17
0.68 0.17 0.15
Matches are distributed among these distances:
8 7 0.09
9 44 0.56
10 27 0.35
ACGTcount: A:0.25, C:0.03, G:0.04, T:0.67
Consensus pattern (9 bp):
TTTTATATT
Found at i:60939936 original size:19 final size:19
Alignment explanation
Indices: 60939868--60939983 Score: 53
Period size: 19 Copynumber: 6.2 Consensus size: 19
60939858 CTATATAAAA
* * *
60939868 TTTTATATATTTCATATAT
1 TTTTATATTTTTTATATTT
* * *
60939887 TTCTATATATTTTATAATT
1 TTTTATATTTTTTATATTT
*
60939906 TTTTA-AGATTTTTATA-TT
1 TTTTATA-TTTTTTATATTT
**
60939924 TTTTATATTTTTTGCGA-TT
1 TTTTATATTTTTT-ATATTT
* ** *
60939943 ATTTATAGCTTTTAT-TGT
1 TTTTATATTTTTTATATTT
60939961 TTTTA-ATTTTTTATAATTT
1 TTTTATATTTTTTAT-ATTT
60939980 TTTT
1 TTTT
60939984 TCTTATTTTT
Statistics
Matches: 71, Mismatches: 20, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
17 7 0.10
18 18 0.25
19 46 0.65
ACGTcount: A:0.25, C:0.03, G:0.04, T:0.67
Consensus pattern (19 bp):
TTTTATATTTTTTATATTT
Found at i:60939955 original size:28 final size:28
Alignment explanation
Indices: 60939896--60939957 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
60939886 TTTCTATATA
**
60939896 TTTTATAATTTTTTAAGATTTTTATATT
1 TTTTATAATTTTTTAAGATTTTTATAGC
**
60939924 TTTTAT-ATTTTTTGCGATTATTTATAGC
1 TTTTATAATTTTTTAAGATT-TTTATAGC
60939952 TTTTAT
1 TTTTAT
60939958 TGTTTTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 11 0.38
28 18 0.62
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.66
Consensus pattern (28 bp):
TTTTATAATTTTTTAAGATTTTTATAGC
Found at i:60940151 original size:86 final size:88
Alignment explanation
Indices: 60940005--60940197 Score: 295
Period size: 86 Copynumber: 2.2 Consensus size: 88
60939995 ATAAAAGCAT
* *
60940005 GGGG-TTAATTGCTTTTTTTGAAAATTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTAC
1 GGGGCTTAATTGCTTTTTTTGAAAATTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTAC
*
60940069 CCAATTGAGTGCAAAAAAAAAGTA
66 CCAAATGAGTG-AAAAAAAAAGTA
* *
60940093 GGGGCTTAATTGCATTTTTT-AAGA-TTTGAGGGCCTTTTT-ATGCATTTTAAAAGTTCAAGTAC
1 GGGGCTTAATTGCTTTTTTTGAAAATTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTAC
*
60940155 CCAAATGAGTGGAAAAAAAAGTA
66 CCAAATGAGTGAAAAAAAAAGTA
60940178 GGGGCTTAATTGCTTTTTTT
1 GGGGCTTAATTGCTTTTTTT
60940198 TTTTTTAAGT
Statistics
Matches: 97, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
85 30 0.31
86 32 0.33
87 14 0.14
88 7 0.07
89 14 0.14
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.38
Consensus pattern (88 bp):
GGGGCTTAATTGCTTTTTTTGAAAATTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTAC
CCAAATGAGTGAAAAAAAAAGTA
Found at i:60952105 original size:25 final size:26
Alignment explanation
Indices: 60952077--60952125 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
60952067 TCCAAAAGCA
*
60952077 TTAATAGTTAA-TTTGCTTGATTATG
1 TTAATAGTTAAGTTTGATTGATTATG
60952102 TTAATAGTTAAGTTTGATTGATTA
1 TTAATAGTTAAGTTTGATTGATTA
60952126 AGGGGGAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.31, C:0.02, G:0.16, T:0.51
Consensus pattern (26 bp):
TTAATAGTTAAGTTTGATTGATTATG
Found at i:60959052 original size:40 final size:40
Alignment explanation
Indices: 60958977--60959084 Score: 148
Period size: 40 Copynumber: 2.7 Consensus size: 40
60958967 AGTTTGGCAC
* * *
60958977 CCAGTGCCTCATCGGAT-AATTCAAAGTAGTAAATTGACA
1 CCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGACA
*
60959016 CCAGTGTCTCATCGAATAAATCCGAAGTAGTAAATTGACA
1 CCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGACA
*
60959056 CCTAGTGTCTCATCGGTTAAA-CCGAAGTA
1 CC-AGTGTCTCATCGGATAAATCCGAAGTA
60959085 AAGGGCACCT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 15 0.25
40 30 0.49
41 16 0.26
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (40 bp):
CCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGACA
Found at i:60960012 original size:5 final size:4
Alignment explanation
Indices: 60959954--60960029 Score: 50
Period size: 4 Copynumber: 18.2 Consensus size: 4
60959944 CCTAGCCTTG
* *
60959954 TCTT TCTC T-TT TCTT TCTT TCCT T-TT T-TT TCTTT TCTT TCTT TCCTT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC-TT TCTT TCTT T-CTT
*
60960001 TCTGTT TCGTTT TGTT TCTT TCTT TCTT T
1 TC--TT TC--TT TCTT TCTT TCTT TCTT T
60960030 ATTCATTTAC
Statistics
Matches: 58, Mismatches: 8, Indels: 12
0.74 0.10 0.15
Matches are distributed among these distances:
3 7 0.12
4 36 0.62
5 8 0.14
6 7 0.12
ACGTcount: A:0.00, C:0.22, G:0.04, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:60960065 original size:19 final size:19
Alignment explanation
Indices: 60960041--60960087 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
60960031 TTCATTTACT
* *
60960041 TATTTATTTTGTTTTATTA
1 TATTTATTTTATTATATTA
*
60960060 TATTTACTTTATTATATTA
1 TATTTATTTTATTATATTA
*
60960079 TATATATTT
1 TATTTATTT
60960088 ACTTAAATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (19 bp):
TATTTATTTTATTATATTA
Found at i:60970907 original size:4 final size:4
Alignment explanation
Indices: 60970894--60970924 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
60970884 TCATTTTTTG
60970894 AATT -ATT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT
60970925 GAAGTTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
AATT
Found at i:60973900 original size:29 final size:30
Alignment explanation
Indices: 60973860--60973920 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
60973850 ATTTCTGGGC
* *
60973860 TTTAGGACAAAAGT-GTAATTATGTAAAAG
1 TTTAGGACAAAAATCATAATTATGTAAAAG
* *
60973889 TTTAGGAGAAAAATCATAATTTTGTAAAAG
1 TTTAGGACAAAAATCATAATTATGTAAAAG
60973919 TT
1 TT
60973921 AGAGTCGAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.34
Consensus pattern (30 bp):
TTTAGGACAAAAATCATAATTATGTAAAAG
Found at i:60974484 original size:50 final size:49
Alignment explanation
Indices: 60974419--60974538 Score: 143
Period size: 49 Copynumber: 2.4 Consensus size: 49
60974409 GAGGTCCCCC
* *
60974419 GTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAAC-TCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCA-CTACAAGA-AACATCCCAT
* * * *
60974469 GTAAGACCATATCTGGGATATGGCATTGGCAGTACAAGAAACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACTACAAGAAACATCCCAT
* *
60974518 GTAAGACTATGTCTGAGACAT
1 GTAAGACCATGTCTGGGACAT
60974539 AGCTTTGGCA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
48 3 0.05
49 28 0.47
50 28 0.47
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACTACAAGAAACATCCCAT
Found at i:60979097 original size:3 final size:3
Alignment explanation
Indices: 60979089--60979144 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
60979079 AGTTATTTTC
*
60979089 TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
60979137 TTA TTA TT
1 TTA TTA TT
60979145 GTTGTTGTTG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:60979149 original size:3 final size:3
Alignment explanation
Indices: 60979143--60979168 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
60979133 ATTATTATTA
60979143 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
60979169 TAGTACTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:60981764 original size:24 final size:24
Alignment explanation
Indices: 60981737--60981782 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
60981727 AGAACAATCC
* *
60981737 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
60981761 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
60981783 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:60984402 original size:14 final size:14
Alignment explanation
Indices: 60984385--60984426 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
60984375 TGAAAGTGAT
60984385 AAAAAAGAAAAGGA
1 AAAAAAGAAAAGGA
*
60984399 AAAAAAGAAAAAGA
1 AAAAAAGAAAAGGA
*
60984413 AAAGAAAAAAAAGG
1 AAA-AAAGAAAAGG
60984427 TGAGGCCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAGGA
Found at i:60984411 original size:20 final size:20
Alignment explanation
Indices: 60984386--60984425 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
60984376 GAAAGTGATA
*
60984386 AAAAAGAAAAGGAAAAAAAG
1 AAAAAGAAAAGAAAAAAAAG
60984406 AAAAAGAAAAGAAAAAAAAG
1 AAAAAGAAAAGAAAAAAAAG
60984426 GTGAGGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (20 bp):
AAAAAGAAAAGAAAAAAAAG
Found at i:60987255 original size:2 final size:2
Alignment explanation
Indices: 60987248--60987272 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60987238 GAATATTGTT
60987248 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
60987273 TCATTTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60995483 original size:35 final size:36
Alignment explanation
Indices: 60995444--60995513 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
60995434 GTTAGACTAG
60995444 CTCTTATGAGCAT-TGGTGTGTTTCGGATGGATTGA
1 CTCTTATGAGCATCTGGTGTGTTTCGGATGGATTGA
* *
60995479 CTCTTATGAGCATCTGGTGTGTTTTGGTTGGATTG
1 CTCTTATGAGCATCTGGTGTGTTTCGGATGGATTG
60995514 TCGATGTACT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 13 0.41
36 19 0.59
ACGTcount: A:0.14, C:0.11, G:0.31, T:0.43
Consensus pattern (36 bp):
CTCTTATGAGCATCTGGTGTGTTTCGGATGGATTGA
Found at i:60995511 original size:36 final size:36
Alignment explanation
Indices: 60995421--60995513 Score: 127
Period size: 35 Copynumber: 2.6 Consensus size: 36
60995411 ACTCTCTATT
* *
60995421 TTGGTGTGTTTTGGTTAGACT-AGCTCTTATGAGCA
1 TTGGTGTGTTTTGGTTGGATTGAGCTCTTATGAGCA
* *
60995456 TTGGTGTGTTTCGGATGGATTGA-CTCTTATGAGCA
1 TTGGTGTGTTTTGGTTGGATTGAGCTCTTATGAGCA
60995491 TCTGGTGTGTTTTGGTTGGATTG
1 T-TGGTGTGTTTTGGTTGGATTG
60995514 TCGATGTACT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
35 30 0.60
36 20 0.40
ACGTcount: A:0.14, C:0.10, G:0.32, T:0.44
Consensus pattern (36 bp):
TTGGTGTGTTTTGGTTGGATTGAGCTCTTATGAGCA
Found at i:60996213 original size:19 final size:19
Alignment explanation
Indices: 60996189--60996242 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
60996179 AATTTTTGAG
60996189 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60996208 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
60996227 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
60996243 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:60996268 original size:22 final size:22
Alignment explanation
Indices: 60996202--60996265 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 22
60996192 ATGCAATCTT
*
60996202 AGATATGATATGCAATCTT---
1 AGATATGATATGTAATCTTAGA
60996221 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
60996243 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
60996266 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.46
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:60996275 original size:22 final size:23
Alignment explanation
Indices: 60996231--60996275 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
60996221 AGATATGATA
*
60996231 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
60996254 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
60996276 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:60996609 original size:21 final size:21
Alignment explanation
Indices: 60996564--60996609 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
60996554 TTAAGTTTTC
* *
60996564 TTTATTTTTTTAATTTACCAT
1 TTTATTTTTTTAAATTACCAA
60996585 TTTATTTATTTTAAATT-CCAA
1 TTTATTT-TTTTAAATTACCAA
60996606 TTTA
1 TTTA
60996610 ATCTTTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTATTTTTTTAAATTACCAA
Found at i:60996799 original size:22 final size:21
Alignment explanation
Indices: 60996774--60996822 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
60996764 TTTATCTTAA
60996774 AATTAATTAATTTTAATAATGT
1 AATTAATTAATTTTAAT-ATGT
** *
60996796 AATTTTTTTAATTTTTATATGT
1 AA-TTAATTAATTTTAATATGT
60996818 AATTA
1 AATTA
60996823 TTATTTACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
21 2 0.09
22 8 0.36
23 12 0.55
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (21 bp):
AATTAATTAATTTTAATATGT
Found at i:60996857 original size:18 final size:18
Alignment explanation
Indices: 60996812--60996862 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
60996802 TTTAATTTTT
*
60996812 ATATGTAATTATTATTTAC
1 ATATGT-ATTATTATGTAC
* * *
60996831 ATGTATATTTTTATGTAC
1 ATATGTATTATTATGTAC
60996849 ATATGTATTATTAT
1 ATATGTATTATTAT
60996863 TTTTTTCAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (18 bp):
ATATGTATTATTATGTAC
Found at i:60997132 original size:10 final size:12
Alignment explanation
Indices: 60997115--60997146 Score: 50
Period size: 10 Copynumber: 2.8 Consensus size: 12
60997105 GTATTTTGTT
60997115 TATATAAATTT-
1 TATATAAATTTA
60997126 T-TATAAATTTA
1 TATATAAATTTA
60997137 TATATAAATT
1 TATATAAATT
60997147 CATTTGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.47
11 2 0.11
12 8 0.42
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TATATAAATTTA
Found at i:60999023 original size:19 final size:20
Alignment explanation
Indices: 60998999--60999045 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
60998989 GGGTTTTATT
60998999 TTATTTTATATTAATATA-A
1 TTATTTTATATTAATATAGA
*
60999018 TTATTTAATATTAATATAGA
1 TTATTTTATATTAATATAGA
60999038 TT-TTTTAT
1 TTATTTTAT
60999046 TTATTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 22 0.88
20 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTATTTTATATTAATATAGA
Found at i:60999068 original size:24 final size:24
Alignment explanation
Indices: 60998993--60999069 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
60998983 GAGGAGGGGT
* *
60998993 TTTATTT-TATTTTATATTAATATA
1 TTTATTTATTTTTTATAATAAT-TA
* * * * *
60999017 ATTATTTAATATTAAT-ATAGATTT
1 TTTATTTATTTTTTATAATA-ATTA
60999041 TTTATTTATTTTTTATAATAATTA
1 TTTATTTATTTTTTATAATAATTA
60999065 TTTAT
1 TTTAT
60999070 AATTTATATA
Statistics
Matches: 38, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
24 29 0.76
25 9 0.24
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (24 bp):
TTTATTTATTTTTTATAATAATTA
Found at i:60999095 original size:19 final size:20
Alignment explanation
Indices: 60999042--60999083 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
60999032 TATAGATTTT
**
60999042 TTATTTATTTTTTATAATAA
1 TTATTTATAATTTATAATAA
60999062 TTATTTATAATTTAT-ATAA
1 TTATTTATAATTTATAATAA
60999081 TTA
1 TTA
60999084 ATTTTACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTTATAATTTATAATAA
Found at i:61003145 original size:3 final size:3
Alignment explanation
Indices: 61003137--61003164 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
61003127 GTATCTACCC
61003137 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
61003165 AAATAAACCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:61007572 original size:7 final size:7
Alignment explanation
Indices: 61007555--61007586 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
61007545 TTCCAAATTT
61007555 TTAAT-A
1 TTAATAA
61007561 TTAATAA
1 TTAATAA
61007568 TTAATAA
1 TTAATAA
61007575 TTAATAA
1 TTAATAA
61007582 TTAAT
1 TTAAT
61007587 TTATTTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TTAATAA
Found at i:61008162 original size:19 final size:19
Alignment explanation
Indices: 61008134--61008196 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
61008124 AAAATAAATC
*
61008134 AAAATAAATTTCAAAAATTT
1 AAAAT-AATTTTAAAAATTT
*
61008154 AAAATAATTTTTAAAATTT
1 AAAATAATTTTAAAAATTT
61008173 AAAAT-ATTTATAAAAATTT
1 AAAATAATTT-TAAAAATTT
*
61008192 TAAAT
1 AAAAT
61008197 TTTGTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
18 4 0.11
19 29 0.76
20 5 0.13
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATAATTTTAAAAATTT
Found at i:61008181 original size:28 final size:28
Alignment explanation
Indices: 61008139--61008192 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
61008129 AAATCAAAAT
61008139 AAATTTCAAAAATTTA-AAATAATTTTTA
1 AAATTTCAAAAATTTATAAA-AATTTTTA
61008167 AAATTT-AAAATATTTATAAAAATTTT
1 AAATTTCAAAA-ATTTATAAAAATTTT
61008193 AAATTTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 4 0.17
28 17 0.71
29 3 0.12
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (28 bp):
AAATTTCAAAAATTTATAAAAATTTTTA
Found at i:61008195 original size:9 final size:9
Alignment explanation
Indices: 61008139--61008195 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
61008129 AAATCAAAAT
*
61008139 AAATTTCAA
1 AAATTTTAA
*
61008148 AAATTTAAA
1 AAATTTTAA
*
61008157 ATAATTTTTA
1 A-AATTTTAA
61008167 AAA-TTTAA
1 AAATTTTAA
61008175 AATATTTATAA
1 AA-ATTT-TAA
61008186 AAATTTTAA
1 AAATTTTAA
61008195 A
1 A
61008196 TTTTGTATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
8 6 0.15
9 16 0.40
10 13 0.32
11 5 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (9 bp):
AAATTTTAA
Found at i:61008289 original size:17 final size:17
Alignment explanation
Indices: 61008247--61008291 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
61008237 TAAAAAATAT
61008247 ATAAAAATTTTTGAAAA
1 ATAAAAATTTTTGAAAA
*
61008264 TTAAAAATTTTT-ATAAA
1 ATAAAAATTTTTGA-AAA
*
61008281 ATAATAATTTT
1 ATAAAAATTTT
61008292 GGAATCTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 1 0.04
17 23 0.96
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
ATAAAAATTTTTGAAAA
Found at i:61008608 original size:21 final size:21
Alignment explanation
Indices: 61008584--61008623 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
61008574 ACCTTATCTA
61008584 AAGTTAAAA-GTCAAAACTATT
1 AAGTTAAAAGGT-AAAACTATT
61008605 AAGTTAAAAGGTAAAACTA
1 AAGTTAAAAGGTAAAACTA
61008624 CGTTGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.55, C:0.07, G:0.12, T:0.25
Consensus pattern (21 bp):
AAGTTAAAAGGTAAAACTATT
Found at i:61009054 original size:3 final size:3
Alignment explanation
Indices: 61009048--61009105 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
61009038 CTTTTTTTTC
61009048 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
61009096 TCT TCT TCT T
1 TCT TCT TCT T
61009106 TTTTCACCAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:61011677 original size:45 final size:45
Alignment explanation
Indices: 61011537--61011677 Score: 130
Period size: 42 Copynumber: 3.1 Consensus size: 45
61011527 GTTGTGTATT
*
61011537 CACAACTACTAGCAACATATTAACCTACAAGCATTTGTGGTATATC
1 CACAACTACTAGCAACATATTAACCTACAA-CACTTGTGGTATATC
* * * *
61011583 CACAACTTATACTGGCAAC-TATT-ATCTGCAAACCCGTTGT-GTAT-T-
1 CACAAC---TACTAGCAACATATTAACCTAC-AACAC-TTGTGGTATATC
* *
61011628 CACAACTACTAACAACATATTAACCTACAACACTTGTGGTTTATC
1 CACAACTACTAGCAACATATTAACCTACAACACTTGTGGTATATC
61011673 CACAA
1 CACAA
61011678 TGTAAAGTGT
Statistics
Matches: 74, Mismatches: 11, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
42 12 0.16
43 11 0.15
44 5 0.07
45 11 0.15
46 7 0.09
47 9 0.12
48 10 0.14
49 9 0.12
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (45 bp):
CACAACTACTAGCAACATATTAACCTACAACACTTGTGGTATATC
Found at i:61018263 original size:26 final size:26
Alignment explanation
Indices: 61018233--61018322 Score: 67
Period size: 26 Copynumber: 3.4 Consensus size: 26
61018223 TGATGATGTT
61018233 AGAGATATTATAGATCAATTAAATAA
1 AGAGATATTATAGATCAATTAAATAA
* * * **
61018259 AGAGAAATCTGA-AGA-CAATGATGATGTT
1 AGAGATAT-T-ATAGATCAATTA-AAT-AA
61018287 AGAGATATTATAGATCAATTAAATAA
1 AGAGATATTATAGATCAATTAAATAA
* *
61018313 ATAAATATTA
1 AGAGATATTA
61018323 GTTTATTAAT
Statistics
Matches: 46, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
26 21 0.46
27 12 0.26
28 13 0.28
ACGTcount: A:0.51, C:0.04, G:0.14, T:0.30
Consensus pattern (26 bp):
AGAGATATTATAGATCAATTAAATAA
Found at i:61018278 original size:54 final size:55
Alignment explanation
Indices: 61018191--61018313 Score: 214
Period size: 54 Copynumber: 2.2 Consensus size: 55
61018181 GGAAAAATGG
61018191 TCAATTAAA-AGAGAGAGAAATCTAGAAGACAATGATGATGTTAGAGATATTATAGA
1 TCAATTAAATA-A-AGAGAAATCTAGAAGACAATGATGATGTTAGAGATATTATAGA
61018247 TCAATTAAATAAAGAGAAATCT-GAAGACAATGATGATGTTAGAGATATTATAGA
1 TCAATTAAATAAAGAGAAATCTAGAAGACAATGATGATGTTAGAGATATTATAGA
61018301 TCAATTAAATAAA
1 TCAATTAAATAAA
61018314 TAAATATTAG
Statistics
Matches: 66, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
54 45 0.68
55 10 0.15
56 10 0.15
57 1 0.02
ACGTcount: A:0.50, C:0.06, G:0.18, T:0.27
Consensus pattern (55 bp):
TCAATTAAATAAAGAGAAATCTAGAAGACAATGATGATGTTAGAGATATTATAGA
Found at i:61027714 original size:19 final size:20
Alignment explanation
Indices: 61027672--61027714 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
61027662 ATTACCAGCT
* * *
61027672 CAAAATAATTTTTGGATTTT
1 CAAAATAATTTTCGGATATC
61027692 CAAAATAATTTTCGGA-ATC
1 CAAAATAATTTTCGGATATC
61027711 CAAA
1 CAAA
61027715 CATGAGAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (20 bp):
CAAAATAATTTTCGGATATC
Found at i:61030541 original size:3 final size:3
Alignment explanation
Indices: 61030535--61030575 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
61030525 ACTAATTAGT
* *
61030535 TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTG TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
61030576 TTAAAATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:61035725 original size:17 final size:17
Alignment explanation
Indices: 61035703--61035746 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
61035693 CTAAGTTGAT
*
61035703 TAATTAAAATCTCTTTC
1 TAATTAAAACCTCTTTC
61035720 TAATTAAAACCTCTTTC
1 TAATTAAAACCTCTTTC
61035737 TAATTAAAAC
1 TAATTAAAAC
61035747 ACATATTGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATTAAAACCTCTTTC
Found at i:61036393 original size:30 final size:30
Alignment explanation
Indices: 61036340--61036396 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
61036330 CACTGGCTGG
* *
61036340 CACAAGGGCGTGTGTCCAGCCCGTGTGTCC
1 CACAAGGGCGTGTGCCCAACCCGTGTGTCC
* *
61036370 CACATGGGTGTGTGCCCAACCCGTGTG
1 CACAAGGGCGTGTGCCCAACCCGTGTG
61036397 GCTTCTGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.14, C:0.32, G:0.33, T:0.21
Consensus pattern (30 bp):
CACAAGGGCGTGTGCCCAACCCGTGTGTCC
Found at i:61042170 original size:135 final size:135
Alignment explanation
Indices: 61041928--61042193 Score: 424
Period size: 135 Copynumber: 2.0 Consensus size: 135
61041918 CCAATTTACT
* * * * *
61041928 TGCAGGGGAAGAGTTTCAACTTTGCTTGGCAGTGATTTCCGAGATACAATGGACCGATTAATGAC
1 TGCAGGGGAAGAGTTTCAACTTTACTTGACAGTGATTTCCGAGAGAAAATGAACCGATTAATGAC
*
61041993 TTCTCGTGTACAAATGCAAGCGGATGAGGCTGAAAGTCAACAAGAAGTGGATGATAAGGAAGGAA
66 TTCTCGTGTACAAATGCAAGCGGATGAGGCTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
61042058 TTATA
131 TTATA
* *
61042063 TGCAGGGGAAGAGTTTCAACTTTATTTGACAGTGATTTCCTAGAGAAAATGAACCGATTAATGAC
1 TGCAGGGGAAGAGTTTCAACTTTACTTGACAGTGATTTCCGAGAGAAAATGAACCGATTAATGAC
* ** *
61042128 TTCTCGTGTACAAATGCAAGCTGATGTTGCTGAAAGTCAACAAGAAGTTGAGGATAAGGAAGGAA
66 TTCTCGTGTACAAATGCAAGCGGATGAGGCTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
61042193 T
131 T
61042194 GGTCCAACCA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
135 119 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.26
Consensus pattern (135 bp):
TGCAGGGGAAGAGTTTCAACTTTACTTGACAGTGATTTCCGAGAGAAAATGAACCGATTAATGAC
TTCTCGTGTACAAATGCAAGCGGATGAGGCTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
TTATA
Found at i:61042240 original size:18 final size:18
Alignment explanation
Indices: 61042213--61042324 Score: 133
Period size: 18 Copynumber: 6.4 Consensus size: 18
61042203 AGTGTCTTAC
*
61042213 GAAGAAGAAGAAGAAGAA
1 GAAGAGGAAGAAGAAGAA
61042231 GAAGAGGAAGAAGAAGAA
1 GAAGAGGAAGAAGAAGAA
61042249 G-A-A-GAAGAAGAAGAA
1 GAAGAGGAAGAAGAAGAA
*
61042264 GAAGAAGAAGAAGAAGAA
1 GAAGAGGAAGAAGAAGAA
*
61042282 GAAGAGGAAGAGGAAGAA
1 GAAGAGGAAGAAGAAGAA
* * * *
61042300 GAATACGACGATGAAGAA
1 GAAGAGGAAGAAGAAGAA
61042318 GAA-AGGA
1 GAAGAGGA
61042325 GCTTAAGCAG
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
15 13 0.16
16 2 0.02
17 5 0.06
18 63 0.76
ACGTcount: A:0.61, C:0.02, G:0.36, T:0.02
Consensus pattern (18 bp):
GAAGAGGAAGAAGAAGAA
Found at i:61042320 original size:3 final size:3
Alignment explanation
Indices: 61042213--61042302 Score: 153
Period size: 3 Copynumber: 30.0 Consensus size: 3
61042203 AGTGTCTTAC
*
61042213 GAA GAA GAA GAA GAA GAA GAA GAG GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* *
61042261 GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA GAG GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
61042303 TACGACGATG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 81 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:61043867 original size:19 final size:19
Alignment explanation
Indices: 61043843--61043880 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
61043833 ACTGACACGT
61043843 GCTGCATCACATAGATTAA
1 GCTGCATCACATAGATTAA
61043862 GCTGCATCACATAGATTAA
1 GCTGCATCACATAGATTAA
61043881 AATATTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (19 bp):
GCTGCATCACATAGATTAA
Found at i:61045138 original size:10 final size:10
Alignment explanation
Indices: 61045119--61045171 Score: 58
Period size: 9 Copynumber: 5.6 Consensus size: 10
61045109 TTTATTGTAA
61045119 TTTTAA-ATT
1 TTTTAATATT
61045128 TTTTAATATT
1 TTTTAATATT
* *
61045138 TTAT-GTATT
1 TTTTAATATT
61045147 TTTT-ATATT
1 TTTTAATATT
*
61045156 TTTTTATATT
1 TTTTAATATT
61045166 TTTTAA
1 TTTTAA
61045172 GCAGAAGAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
9 21 0.57
10 16 0.43
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTTAATATT
Found at i:61045149 original size:19 final size:20
Alignment explanation
Indices: 61045125--61045171 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
61045115 GTAATTTTAA
*
61045125 ATTTTTTAATA-TTTTATGT
1 ATTTTTTAATATTTTTATAT
*
61045144 ATTTTTT-ATATTTTTTTAT
1 ATTTTTTAATATTTTTATAT
61045163 ATTTTTTAA
1 ATTTTTTAA
61045172 GCAGAAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 3 0.12
19 20 0.83
20 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (20 bp):
ATTTTTTAATATTTTTATAT
Found at i:61045811 original size:24 final size:24
Alignment explanation
Indices: 61045777--61045828 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
61045767 TTTCTAAAAG
* *
61045777 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
61045801 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
61045825 ATTT
1 ATTT
61045829 GACTTACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:61051412 original size:26 final size:24
Alignment explanation
Indices: 61051374--61051422 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 24
61051364 TGGCTCAATT
61051374 TTTTATTATAAGTTATTTATGTTA
1 TTTTATTATAAGTTATTTATGTTA
61051398 TTTTATATATAAAGTTATTTATGTT
1 TTTTAT-TAT-AAGTTATTTATGTT
61051423 TGACACCGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.26
25 3 0.13
26 14 0.61
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (24 bp):
TTTTATTATAAGTTATTTATGTTA
Found at i:61061959 original size:25 final size:25
Alignment explanation
Indices: 61061931--61061985 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
61061921 GCTCGCAATG
* *
61061931 GCTTCCCATTATTCAGCTCACACGA
1 GCTTCCCATTATCCAGCTCAAACGA
* * *
61061956 GCTTTCCGTTATCCAGCTCAAATGA
1 GCTTCCCATTATCCAGCTCAAACGA
61061981 GCTTC
1 GCTTC
61061986 TCGTTTACAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.31
Consensus pattern (25 bp):
GCTTCCCATTATCCAGCTCAAACGA
Found at i:61061990 original size:25 final size:25
Alignment explanation
Indices: 61061939--61061998 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
61061929 TGGCTTCCCA
* *
61061939 TTATTCAGCTCACACGAGCTTTCCG
1 TTATACAGCTCAAACGAGCTTTCCG
* *
61061964 TTATCCAGCTCAAATGAGC-TTCTCG
1 TTATACAGCTCAAACGAGCTTTC-CG
61061989 TT-TACAGCTC
1 TTATACAGCTC
61061999 GTATGAGCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 10 0.33
25 20 0.67
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (25 bp):
TTATACAGCTCAAACGAGCTTTCCG
Found at i:61067993 original size:25 final size:22
Alignment explanation
Indices: 61067942--61068003 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 22
61067932 AAACGGAAAA
*
61067942 CTCATGCGAGCTGAATGGGAAG
1 CTCATGCGAGCTGAATAGGAAG
61067964 CTCATGCGAGCTGATTATCAGGAAG
1 CTCATGCGAGCTGA--AT-AGGAAG
**
61067989 CTCATAAGAGCTGAA
1 CTCATGCGAGCTGAA
61068004 ATCGGTGACC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
22 14 0.41
23 1 0.03
24 2 0.06
25 17 0.50
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (22 bp):
CTCATGCGAGCTGAATAGGAAG
Found at i:61096104 original size:25 final size:23
Alignment explanation
Indices: 61096076--61096168 Score: 64
Period size: 25 Copynumber: 3.8 Consensus size: 23
61096066 AGCTCTAACG
61096076 AGCCATTAATCAGGAAGCTCCGGA
1 AGCCA-TAATCAGGAAGCTCCGGA
* * * *
61096100 TAGCCATATATCGGGAAGTTCAAGCA
1 -AGCCATA-ATCAGGAAGCTC-CGGA
*
61096126 AGCTAT-ATC-GAGAAGCTCCGGA
1 AGCCATAATCAG-GAAGCTCCGGA
61096148 GAGCCATTAATCAGGAAGCTC
1 -AGCCA-TAATCAGGAAGCTC
61096169 ACAAAGAGTC
Statistics
Matches: 52, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
22 3 0.06
23 13 0.25
24 3 0.06
25 30 0.58
26 3 0.06
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (23 bp):
AGCCATAATCAGGAAGCTCCGGA
Found at i:61104496 original size:21 final size:19
Alignment explanation
Indices: 61104472--61104518 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
61104462 GTGTTTTACT
*
61104472 TTCTGTTAAGCTCTTACGAGC
1 TTCTGTTAAGCT-TT-CAAGC
*
61104493 TTCTGTTCAGCTTTCAAGC
1 TTCTGTTAAGCTTTCAAGC
61104512 TTCTGTT
1 TTCTGTT
61104519 GCGTATTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 11 0.46
20 2 0.08
21 11 0.46
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
TTCTGTTAAGCTTTCAAGC
Found at i:61105034 original size:23 final size:21
Alignment explanation
Indices: 61104999--61105040 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
61104989 ACCAACTTAC
61104999 ATATTGGTATGAGAATGAGGT
1 ATATTGGTATGAGAATGAGGT
*
61105020 ATATTGTGATATGAGTATGAG
1 ATATTG-G-TATGAGAATGAG
61105041 TGTTATATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (21 bp):
ATATTGGTATGAGAATGAGGT
Found at i:61105376 original size:30 final size:30
Alignment explanation
Indices: 61105340--61105406 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
61105330 GTGTCTTAGT
* *
61105340 CGTGTGTGACACACAGCCAAGTGACACGGC
1 CGTGTGTGACAAACAGCCAAGTGACACAGC
*
61105370 CGTGTGTGACAAACGGCCAAGTGACACAGC
1 CGTGTGTGACAAACAGCCAAGTGACACAGC
61105400 CGTGTGT
1 CGTGTGT
61105407 CCCCTGTATC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.25, C:0.27, G:0.31, T:0.16
Consensus pattern (30 bp):
CGTGTGTGACAAACAGCCAAGTGACACAGC
Found at i:61110148 original size:51 final size:51
Alignment explanation
Indices: 61110068--61110229 Score: 288
Period size: 51 Copynumber: 3.2 Consensus size: 51
61110058 CTGATCAGTA
* *
61110068 ACAAGTGATTAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
* *
61110119 ACAAGTAATAAGTGGTACCTTTAGTTACACTTATCTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
61110170 ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
61110221 ACAAGTGAT
1 ACAAGTGAT
61110230 GTGATATGTG
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 105 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (51 bp):
ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
Found at i:61113796 original size:44 final size:43
Alignment explanation
Indices: 61113733--61113824 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 43
61113723 TTTTACCTCC
*
61113733 TACGTTCACCCTACTCATGAGAATTATGAAGTGGAGACAAGTG
1 TACGTTCACCCTACTCATGACAATTATGAAGTGGAGACAAGTG
61113776 TTACGTTCACCC-AGCTCATGACAATTATGAAGTGGAGACAAGTG
1 -TACGTTCACCCTA-CTCATGACAATTATGAAGTGGAGACAAGTG
61113820 TACGT
1 TACGT
61113825 ACCAAAAGAA
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 6 0.13
44 40 0.87
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (43 bp):
TACGTTCACCCTACTCATGACAATTATGAAGTGGAGACAAGTG
Found at i:61117151 original size:25 final size:25
Alignment explanation
Indices: 61117123--61117171 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
61117113 GTGTTTAAAA
61117123 TTTA-AATTTATTAAATAA-TATATAT
1 TTTATAATTT-TTAAA-AATTATATAT
61117148 TTTATAATTTTTAAAAATTATATA
1 TTTATAATTTTTAAAAATTATATA
61117172 CTTGTTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 2 0.09
25 15 0.68
26 5 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TTTATAATTTTTAAAAATTATATAT
Found at i:61117180 original size:25 final size:26
Alignment explanation
Indices: 61117127--61117181 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
61117117 TTAAAATTTA
*
61117127 AATTTATTAAATAATATATATTTTAT
1 AATTTATTAAATAATATATATTGTAT
61117153 AATTT-TTAAA-AATTATATACTTGT-T
1 AATTTATTAAATAA-TATATA-TTGTAT
61117178 AATT
1 AATT
61117182 ATATGATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 2 0.08
25 16 0.62
26 8 0.31
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (26 bp):
AATTTATTAAATAATATATATTGTAT
Found at i:61117277 original size:16 final size:16
Alignment explanation
Indices: 61117256--61117289 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
61117246 TGTAATTATG
* *
61117256 TAAATATTATTAAAAT
1 TAAATAATAGTAAAAT
61117272 TAAATAATAGTAAAAT
1 TAAATAATAGTAAAAT
61117288 TA
1 TA
61117290 CCGAATATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
TAAATAATAGTAAAAT
Found at i:61117584 original size:31 final size:30
Alignment explanation
Indices: 61117557--61117615 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
61117547 TATGATTTAA
* *
61117557 TGTGTAAATGTATACAT-GAATTTTGATTT
1 TGTGCAAATGTATACATAAAATTTTGATTT
* *
61117586 TGTGCAATTTTATACATAAAATTTTGATTT
1 TGTGCAAATGTATACATAAAATTTTGATTT
61117616 GATCCAATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.49
Consensus pattern (30 bp):
TGTGCAAATGTATACATAAAATTTTGATTT
Found at i:61117616 original size:29 final size:31
Alignment explanation
Indices: 61117567--61117630 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
61117557 TGTGTAAATG
* *
61117567 TATACATGAATTTTGATTTTG-TGCAATT-T
1 TATACATAAATTTTGATTTTGATCCAATTCT
61117596 TATACATAAAATTTTGA-TTTGATCCAATTCT
1 TATACAT-AAATTTTGATTTTGATCCAATTCT
61117627 TATA
1 TATA
61117631 AATTATTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 11 0.37
30 14 0.47
31 5 0.17
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.48
Consensus pattern (31 bp):
TATACATAAATTTTGATTTTGATCCAATTCT
Found at i:61117846 original size:498 final size:499
Alignment explanation
Indices: 61117302--61118299 Score: 1989
Period size: 498 Copynumber: 2.0 Consensus size: 499
61117292 GAATATCAAA
61117302 CGATAATAACTAAACATCTCAAATAATAATGAAAAGTTTTTTTTTTTTTTGTGATGGAAATAAAA
1 CGATAATAACTAAACATCTCAAATAATAATGAAAAGTTTTTTTTTTTTTTGTGATGGAAATAAAA
61117367 CATAATAAATAATGCTAAAATATTGTTTTTTTCGATAATTCTTTAGATATTATTTTGAACGAAAA
66 CATAATAAATAATGCTAAAATATTGTTTTTTTCGATAATTCTTTAGATATTATTTTGAACGAAAA
61117432 TGTATTGCTAATGCATATATTTATAAATTTATAATGCTAAATATAAATTTTAATTGGTATATAAA
131 TGTATTGCTAATGCATATATTTATAAATTTATAATGCTAAATATAAATTTTAATTGGTATATAAA
61117497 TTAAGTGATAACTAATATGAAAGGAAAAAATACTAAAACTATACATTAACTATGATTTAATGTGT
196 TTAAGTGATAACTAATATGAAAGGAAAAAATACTAAAACTATACATTAACTATGATTTAATGTGT
61117562 AAATGTATACATGAATTTTGATTTTGTGCAATTTTATACATAAAATTTTGATTTGATCCAATTCT
261 AAATGTATACATGAATTTTGATTTTGTGCAATTTTATACATAAAATTTTGATTTGATCCAATTCT
61117627 TATAAATTATTAACACAATTATTGATCTAACATTATTTTATGTTTATATATTGCATACATAAATA
326 TATAAATTATTAACACAATTATTGATCTAACATTATTTTATGTTTATATATTGCATACATAAATA
61117692 ATTATATTTATCCAGTATAAAAATAAATTGATGTATTTATTGCTTTAAATGTGTATGATTAAATC
391 ATTATATTTATCCAGTATAAAAATAAATTGATGTATTTATTGCTTTAAATGTGTATGATTAAATC
61117757 AAAATTAAAGTTTCAAGTATACATTTGAACCACAAATAGAGTTT
456 AAAATTAAAGTTTCAAGTATACATTTGAACCACAAATAGAGTTT
61117801 CGATAATAACT-AACATCTCAAATAATAATGAAAAGTTTTTTTTTTTTTTGTGATGGAAATAAAA
1 CGATAATAACTAAACATCTCAAATAATAATGAAAAGTTTTTTTTTTTTTTGTGATGGAAATAAAA
61117865 CATAATAAATAATGCTAAAATATTGTTTTTTTCGATAATTCTTTAGATATTATTTTGAACGAAAA
66 CATAATAAATAATGCTAAAATATTGTTTTTTTCGATAATTCTTTAGATATTATTTTGAACGAAAA
61117930 TGTATTGCTAATGCATATATTTATAAATTTATAATGCTAAATATAAATTTTAATTGGTATATAAA
131 TGTATTGCTAATGCATATATTTATAAATTTATAATGCTAAATATAAATTTTAATTGGTATATAAA
61117995 TTAAGTGATAACTAATATGAAAGGAAAAAATACTAAAACTATACATTAACTATGATTTAATGTGT
196 TTAAGTGATAACTAATATGAAAGGAAAAAATACTAAAACTATACATTAACTATGATTTAATGTGT
61118060 AAATGTATACATGAATTTTGATTTTGTGCAATTTTATACATAAAATTTTGATTTGATCCAATTCT
261 AAATGTATACATGAATTTTGATTTTGTGCAATTTTATACATAAAATTTTGATTTGATCCAATTCT
61118125 TATAAATTATTAACACAATTATTGATCTAACATTATTTTATGTTTATATATTGCATACATAAATA
326 TATAAATTATTAACACAATTATTGATCTAACATTATTTTATGTTTATATATTGCATACATAAATA
61118190 ATTATATTTATCCAGTATAAAAATAAATTGATGTATTTATTGCTTTAAATGTGTATGATTAAATC
391 ATTATATTTATCCAGTATAAAAATAAATTGATGTATTTATTGCTTTAAATGTGTATGATTAAATC
61118255 AAAATTAAAGTTTCAAGTATACATTTGAACCACAAATAGAGTTT
456 AAAATTAAAGTTTCAAGTATACATTTGAACCACAAATAGAGTTT
61118299 C
1 C
61118300 ACGTGTATAA
Statistics
Matches: 499, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
498 488 0.98
499 11 0.02
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (499 bp):
CGATAATAACTAAACATCTCAAATAATAATGAAAAGTTTTTTTTTTTTTTGTGATGGAAATAAAA
CATAATAAATAATGCTAAAATATTGTTTTTTTCGATAATTCTTTAGATATTATTTTGAACGAAAA
TGTATTGCTAATGCATATATTTATAAATTTATAATGCTAAATATAAATTTTAATTGGTATATAAA
TTAAGTGATAACTAATATGAAAGGAAAAAATACTAAAACTATACATTAACTATGATTTAATGTGT
AAATGTATACATGAATTTTGATTTTGTGCAATTTTATACATAAAATTTTGATTTGATCCAATTCT
TATAAATTATTAACACAATTATTGATCTAACATTATTTTATGTTTATATATTGCATACATAAATA
ATTATATTTATCCAGTATAAAAATAAATTGATGTATTTATTGCTTTAAATGTGTATGATTAAATC
AAAATTAAAGTTTCAAGTATACATTTGAACCACAAATAGAGTTT
Done.