Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 190 of 210
Found at i:63090183 original size:20 final size:20
Alignment explanation
Indices: 63090080--63090183 Score: 63
Period size: 20 Copynumber: 5.2 Consensus size: 20
63090070 AGGGGTACCC
* *
63090080 AAGTACAAATAAGGACACGT
1 AAGTACAAATAGGGGCACGT
* * *
63090100 AGGTGC-AATCAGGGGTACCG-
1 AAGTACAAAT-AGGGGCA-CGT
* *
63090120 AAGTACAGACAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
* *
63090140 AAGTGC-AATCAGGGGTACCG-
1 AAGTACAAAT-AGGGGCA-CGT
63090160 AAGTACAAATAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
63090180 AAGT
1 AAGT
63090184 GCAATCATTT
Statistics
Matches: 60, Mismatches: 16, Indels: 16
0.65 0.17 0.17
Matches are distributed among these distances:
19 8 0.13
20 44 0.73
21 8 0.13
ACGTcount: A:0.37, C:0.17, G:0.32, T:0.14
Consensus pattern (20 bp):
AAGTACAAATAGGGGCACGT
Found at i:63101022 original size:50 final size:50
Alignment explanation
Indices: 63100968--63101141 Score: 206
Period size: 50 Copynumber: 3.5 Consensus size: 50
63100958 ATCCTAGATG
** * * *
63100968 TGGTCTTACATGGGAGTTCTCATATCGGTGCCTATGCCATGTCCTAGACA
1 TGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGACA
* * *
63101018 TGGTCTTAC-GGAGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACA
1 TGGTCTTACATG-GGACCTCTCATATCGGTGCCAACGCCATGTCCCAGACA
* * * *
63101068 TAGTCTTACATGGGACCTCTTATCTCGGTGCCAACGCCATGTCCCAAACA
1 TGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGACA
* *
63101118 TGGTCTTAAATGGGATCTCTCATA
1 TGGTCTTACATGGGACCTCTCATA
63101142 ATCTCAATGA
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.01
50 102 0.98
51 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (50 bp):
TGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGACA
Found at i:63107099 original size:22 final size:22
Alignment explanation
Indices: 63107074--63107116 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
63107064 ATTGCCTCTA
*
63107074 ATTTAGCA-ATAAACTGCCACTG
1 ATTT-GCAGATAAACTACCACTG
*
63107096 ATTTGTAGATAAACTACCACT
1 ATTTGCAGATAAACTACCACT
63107117 AATAACACTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (22 bp):
ATTTGCAGATAAACTACCACTG
Found at i:63110702 original size:43 final size:43
Alignment explanation
Indices: 63110654--63110800 Score: 159
Period size: 43 Copynumber: 3.4 Consensus size: 43
63110644 TTTATACTTT
*
63110654 GGTTTGTCTGATGATGCATTATGTGTGCCAGTATATTTGCTTC
1 GGTTTGTCTGATGATGCATTATGTGTGCCAATATATTTGCTTC
* ** * * *
63110697 GGTTTGTCTGATGATGTACAATGTATGCCAATATGTTTGCTAC
1 GGTTTGTCTGATGATGCATTATGTGTGCCAATATATTTGCTTC
** * * * * *
63110740 GGTTTGTCCAATTATACATTGTGTGTGCAAATATATTTGTTTC
1 GGTTTGTCTGATGATGCATTATGTGTGCCAATATATTTGCTTC
*
63110783 GGTTTATCTGATGATGCA
1 GGTTTGTCTGATGATGCA
63110801 CTGAGGTGCT
Statistics
Matches: 79, Mismatches: 25, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.21, C:0.13, G:0.23, T:0.43
Consensus pattern (43 bp):
GGTTTGTCTGATGATGCATTATGTGTGCCAATATATTTGCTTC
Found at i:63125111 original size:8 final size:8
Alignment explanation
Indices: 63125098--63125130 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
63125088 TTTTAAATAA
63125098 TATTTTAT
1 TATTTTAT
63125106 TATTTTAT
1 TATTTTAT
63125114 TATTTTAT
1 TATTTTAT
63125122 TATTTTAT
1 TATTTTAT
63125130 T
1 T
63125131 GTTTAGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:63128977 original size:19 final size:20
Alignment explanation
Indices: 63128942--63128979 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
63128932 GCAATTAATT
63128942 AAATTTTATACTTTTTTAAC
1 AAATTTTATACTTTTTTAAC
63128962 AAATTTTATA-TTTTTTAA
1 AAATTTTATACTTTTTTAA
63128980 ATTTTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (20 bp):
AAATTTTATACTTTTTTAAC
Found at i:63134899 original size:34 final size:34
Alignment explanation
Indices: 63134861--63134933 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 34
63134851 CAGAAACTTA
63134861 ATAAGAATGACT-TTTGCTACTG-AGTTGAACTATT
1 ATAAGAAT-ACTATTTGCTACTGTA-TTGAACTATT
* * *
63134895 ATAAGCATATTATTTGCTACTGTATTGAACTGTT
1 ATAAGAATACTATTTGCTACTGTATTGAACTATT
63134929 ATAAG
1 ATAAG
63134934 CATATCGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 2 0.06
34 31 0.91
35 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (34 bp):
ATAAGAATACTATTTGCTACTGTATTGAACTATT
Found at i:63134934 original size:34 final size:34
Alignment explanation
Indices: 63134873--63134938 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 34
63134863 AAGAATGACT
63134873 TTTGCTACTGAGTTGAACTATTATAAGCATATTA
1 TTTGCTACTGAGTTGAACTATTATAAGCATATTA
*
63134907 TTTGCTACTGTA-TTGAACTGTTATAAGCATAT
1 TTTGCTACTG-AGTTGAACTATTATAAGCATAT
63134939 CGATTTTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 29 0.97
35 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (34 bp):
TTTGCTACTGAGTTGAACTATTATAAGCATATTA
Found at i:63134954 original size:34 final size:34
Alignment explanation
Indices: 63134885--63134970 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
63134875 TGCTACTGAG
* * *
63134885 TTGAACTATTATAAGCATATTATTTGCTACTGTA
1 TTGAACTGTTATAAGCATATGATTTGCTACCGTA
*
63134919 TTGAACTGTTATAAGCATATCGATTT-TTACCGTA
1 TTGAACTGTTATAAGCATAT-GATTTGCTACCGTA
** *
63134953 TTGTTCTGTTAAAAGCAT
1 TTGAACTGTTATAAGCAT
63134971 GATAAATACT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 40 0.91
35 4 0.09
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (34 bp):
TTGAACTGTTATAAGCATATGATTTGCTACCGTA
Found at i:63135215 original size:25 final size:25
Alignment explanation
Indices: 63135128--63135211 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 25
63135118 CAGGTAACAC
* *
63135128 GCCATAAAGACTTTTCATAAGATTA
1 GCCACAAAGACTTTTCACAAGATTA
* *
63135153 GCCACAAAGAC--TTCCCAAGTAATA
1 GCCACAAAGACTTTTCACAAG-ATTA
* * *
63135177 CGCTACATAGGCTTTTCACAAGATTA
1 -GCCACAAAGACTTTTCACAAGATTA
63135203 GCCACAAAG
1 GCCACAAAG
63135212 GCTTCCCAAG
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
23 6 0.14
24 3 0.07
25 25 0.57
26 3 0.07
27 7 0.16
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (25 bp):
GCCACAAAGACTTTTCACAAGATTA
Found at i:63137239 original size:12 final size:12
Alignment explanation
Indices: 63137229--63137276 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
63137219 TATACTATAT
*
63137229 GTTATAATATAAA
1 GTTATAATA-ATA
63137242 GTTAATAATAATA
1 GTT-ATAATAATA
*
63137255 GTAATAATAATA
1 GTTATAATAATA
63137267 GTTATAATAA
1 GTTATAATAA
63137277 AAGAAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
12 18 0.58
13 7 0.23
14 6 0.19
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (12 bp):
GTTATAATAATA
Found at i:63138973 original size:30 final size:30
Alignment explanation
Indices: 63138880--63138974 Score: 102
Period size: 30 Copynumber: 3.2 Consensus size: 30
63138870 GTCTTAGCCA
* *
63138880 TGTGAGGCACACGGCCTGGCCACACAAGCA
1 TGTGAGGCACACGGCCTGGCCACACAGGCG
* * *
63138910 CGTGAGGCACACGACCTGGCCACA-TGTGCG
1 TGTGAGGCACACGGCCTGGCCACACAG-GCG
** *
63138940 TGTGAGGTGCACGGCCTGGCCACACAGGTG
1 TGTGAGGCACACGGCCTGGCCACACAGGCG
63138970 TGTGA
1 TGTGA
63138975 CCCTTGTAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
30 51 0.98
31 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.35, T:0.15
Consensus pattern (30 bp):
TGTGAGGCACACGGCCTGGCCACACAGGCG
Found at i:63141348 original size:26 final size:27
Alignment explanation
Indices: 63141318--63141370 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
63141308 TTTGTTTTTC
63141318 TATTTCTAA-AAATAAACATCTCAATA
1 TATTTCTAATAAATAAACATCTCAATA
* *
63141344 TATTTCTAATTAAATAATCTTCTCAAT
1 TATTTCTAA-TAAATAAACATCTCAAT
63141371 CCAATTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 9 0.39
28 14 0.61
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (27 bp):
TATTTCTAATAAATAAACATCTCAATA
Found at i:63141609 original size:63 final size:62
Alignment explanation
Indices: 63141529--63141720 Score: 202
Period size: 57 Copynumber: 3.1 Consensus size: 62
63141519 ATTTCCAGGT
* *
63141529 CATTTTTATTTTTATTTTCATTTTGGAGAAAACCAAATTCATTTCCAAATGATTCATTTTTTC
1 CATTTTCA-TTTTATTTTCATTTTGGAGAAAACCAAATTCATTTCCAAATGATTCATTTTCTC
* * * *
63141592 CATTTTC-----GTTTTCATTTTGGAGAAAA-CAATAATCATATCCAAATGATTCCTTTTCTC
1 CATTTTCATTTTATTTTCATTTTGGAGAAAACCAA-ATTCATTTCCAAATGATTCATTTTCTC
* *
63141649 CATTTTCATTTTCATTTTCATTTTGGAGAAAACCATAATT-ATTTTCAAATGTTTC-TCATTTCT
1 CATTTTCATTTT-ATTTTCATTTTGGAGAAAACCA-AATTCATTTCCAAATGATTCAT--TTTCT
63141712 C
62 C
63141713 CATTTTCA
1 CATTTTCA
63141721 ACATTTCTAT
Statistics
Matches: 107, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
56 3 0.03
57 48 0.45
62 1 0.01
63 36 0.34
64 18 0.17
65 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.07, T:0.48
Consensus pattern (62 bp):
CATTTTCATTTTATTTTCATTTTGGAGAAAACCAAATTCATTTCCAAATGATTCATTTTCTC
Found at i:63141704 original size:57 final size:57
Alignment explanation
Indices: 63141528--63141720 Score: 187
Period size: 63 Copynumber: 3.3 Consensus size: 57
63141518 CATTTCCAGG
* * *
63141528 TCATTTT-TATTTTTATTTTCATTTTGGAGAAAACCA-AATTCATTTCCAAATGATTC
1 TCATTTTCCATTTTCATTTTCATTTTGGAGAAAACCATAATT-ATTTCCAAATGTTTC
* * * * *
63141584 AT-TTTTTCCATTTTCGTTTTCATTTTGGAGAAAACAATAATCATATCCAAATGATTCCTTTTC
1 -TCATTTTCCATTTTCATTTTCATTTTGGAGAAAACCATAATTATTTCCAAATG------TTTC
*
63141647 TCCATTTT-CATTTTCATTTTCATTTTGGAGAAAACCATAATTATTTTCAAATGTTTC
1 T-CATTTTCCATTTTCATTTTCATTTTGGAGAAAACCATAATTATTTCCAAATGTTTC
63141704 TCATTTCTCCATTTTCA
1 TCATTT-TCCATTTTCA
63141721 ACATTTCTAT
Statistics
Matches: 110, Mismatches: 14, Indels: 23
0.75 0.10 0.16
Matches are distributed among these distances:
56 9 0.08
57 42 0.38
58 11 0.10
62 1 0.01
63 43 0.39
64 4 0.04
ACGTcount: A:0.28, C:0.17, G:0.07, T:0.48
Consensus pattern (57 bp):
TCATTTTCCATTTTCATTTTCATTTTGGAGAAAACCATAATTATTTCCAAATGTTTC
Found at i:63147370 original size:21 final size:21
Alignment explanation
Indices: 63147353--63147392 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
63147343 ACTAAAATTT
63147353 TATTTTAAAAATAAAAAAAAG
1 TATTTTAAAAATAAAAAAAAG
*
63147374 TATTTTAAAATTAAAAAAA
1 TATTTTAAAAATAAAAAAA
63147393 TAAAAGCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
TATTTTAAAAATAAAAAAAAG
Found at i:63154907 original size:29 final size:31
Alignment explanation
Indices: 63154874--63154931 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
63154864 CTGAATTTTG
63154874 AAATTCCTAAAAAT-AGAA-A-TATAAGGATT
1 AAATTCC-AAAAATGAGAAGAGTATAAGGATT
*
63154903 AAATTCCAAAACTGAGAAGAGTATAAGGA
1 AAATTCCAAAAATGAGAAGAGTATAAGGA
63154932 CCTATGCCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 5 0.20
29 11 0.44
30 1 0.04
31 8 0.32
ACGTcount: A:0.53, C:0.09, G:0.16, T:0.22
Consensus pattern (31 bp):
AAATTCCAAAAATGAGAAGAGTATAAGGATT
Found at i:63155355 original size:17 final size:19
Alignment explanation
Indices: 63155319--63155356 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
63155309 TTTAACCCCC
63155319 TAAAATTATGAAATTTTAAT
1 TAAAATTA-GAAATTTTAAT
63155339 TAAAATTA-AAA-TTTAAT
1 TAAAATTAGAAATTTTAAT
63155356 T
1 T
63155357 TCAACTCCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 3 0.17
20 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
TAAAATTAGAAATTTTAAT
Found at i:63157613 original size:12 final size:13
Alignment explanation
Indices: 63157592--63157620 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
63157582 TATTTTCATT
63157592 AAATTATTATTTA
1 AAATTATTATTTA
63157605 AAATT-TTATTTA
1 AAATTATTATTTA
63157617 AAAT
1 AAAT
63157621 AACAGTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AAATTATTATTTA
Found at i:63167413 original size:26 final size:26
Alignment explanation
Indices: 63167384--63167437 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
63167374 ACTATCGAAG
*
63167384 GAAATGTGTCCTTCAACTCCATAAGA
1 GAAATGTGTCCTTCAACTCCACAAGA
63167410 GAAATGTGTCCTTCAACTCCACAAGA
1 GAAATGTGTCCTTCAACTCCACAAGA
63167436 GA
1 GA
63167438 GAGAACGCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (26 bp):
GAAATGTGTCCTTCAACTCCACAAGA
Found at i:63170758 original size:132 final size:133
Alignment explanation
Indices: 63170593--63170857 Score: 523
Period size: 132 Copynumber: 2.0 Consensus size: 133
63170583 CCATAATTAG
63170593 ATTTTGTAACCACAACCAGGACATATGCCAAACCCATTTCTGACCATGCAGTGATATTCATTAGA
1 ATTTTGTAACCACAACCAGGACATATGCCAAACCCATTTCTGACCATGCAGTGATATTCATTAGA
63170658 AAGCAACAACAACTTTAAATATACTAAATTATATCACACTTACAATATGGGCGAAAC-AAACATT
66 AAGCAACAACAACTTTAAATATACTAAATTATATCACACTTACAATATGGGCGAAACAAAACATT
63170722 TTA
131 TTA
63170725 ATTTTGTAACCACAACCAGGACATATGCCAAACCCATTTCTGACCATGCAGTGATATTCATTAGA
1 ATTTTGTAACCACAACCAGGACATATGCCAAACCCATTTCTGACCATGCAGTGATATTCATTAGA
63170790 AAGCAACAACAACTTTAAATATACTAAATTATATCACACTTACAATATGGGCGAAACAAAACATT
66 AAGCAACAACAACTTTAAATATACTAAATTATATCACACTTACAATATGGGCGAAACAAAACATT
63170855 TTA
131 TTA
63170858 TATAAAAAAA
Statistics
Matches: 132, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
132 122 0.92
133 10 0.08
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.27
Consensus pattern (133 bp):
ATTTTGTAACCACAACCAGGACATATGCCAAACCCATTTCTGACCATGCAGTGATATTCATTAGA
AAGCAACAACAACTTTAAATATACTAAATTATATCACACTTACAATATGGGCGAAACAAAACATT
TTA
Found at i:63173409 original size:16 final size:17
Alignment explanation
Indices: 63173376--63173409 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
63173366 TATAAATTTA
*
63173376 ATATTTACCTTATTACT
1 ATATTAACCTTATTACT
63173393 ATATTAACCTT-TTACT
1 ATATTAACCTTATTACT
63173409 A
1 A
63173410 ATAATTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTAACCTTATTACT
Found at i:63175908 original size:274 final size:274
Alignment explanation
Indices: 63175416--63175966 Score: 933
Period size: 274 Copynumber: 2.0 Consensus size: 274
63175406 TAAGGCCGCA
*
63175416 ACATAATGATAGAAGAAAAAATTTGTTTAGGGGAGTTATCAACATTCTGGTAGGAGGAAAACATA
1 ACATAATGATAGAAGAAAAAATTTGTTTAAGGGAGTTATCAACATTCTGGTAGGAGGAAAACATA
*
63175481 TAGAATTGGTTTCGTCAAACTCAAAGGAGAAGGCTCATATGAGAAGTGTCTTGTCGATTCCAGCC
66 TAGAATTGGTTTCGTCAAACTCAAAGGAGAAGGCTCATATGAGAAGTGTCTTGTCGATTCCAACC
* *
63175546 ACTATTAAAAAACCCAAACCTTCCCTATGGGTCCTTAGATTTTCAGAACAAGACAAAAGGGAGAT
131 ACTATTAAAAAACCCAAACCTTCCCTACGGGACCTTAGATTTTCAGAACAAGACAAAAGGGAGAT
* * *
63175611 TCTAAATGTGGAAGGCGAATACCCTCTAAAGGTCTCGAGTAATATCTCCTATTTCTAGGTTAGAA
196 TCTAAATATGGAAGGCAAATACCCTCTAAAGGTCTCGAGTAATATCTCCTATTTCTAGGTCAGAA
63175676 GGATTCTAGTCTAT
261 GGATTCTAGTCTAT
* *
63175690 ACATAATGATAGAGGAAAGAAA-TTGTTTAAGGGAGTTATCGACATTCTGGTAGGAGGAAAACAT
1 ACATAATGATAGAAGAAA-AAATTTGTTTAAGGGAGTTATCAACATTCTGGTAGGAGGAAAACAT
*
63175754 ATAGAATTGGTTTCGTCAAACTCAAAGGAGAAGGCTCATATGGGAAGTGTCTTGTCGATTCCAAC
65 ATAGAATTGGTTTCGTCAAACTCAAAGGAGAAGGCTCATATGAGAAGTGTCTTGTCGATTCCAAC
**
63175819 CACTATTAAAAAACCCAAACCTTTTCTACGGGACCTTAGATTTTCAGAACAAGACAAAAGGGAGA
130 CACTATTAAAAAACCCAAACCTTCCCTACGGGACCTTAGATTTTCAGAACAAGACAAAAGGGAGA
* * * *
63175884 TTCTAGATATGGAAGGTAAATACCCTCTAGAGGTCTCGAGTAATATCTCCTCTTTCTAGGTCAGA
195 TTCTAAATATGGAAGGCAAATACCCTCTAAAGGTCTCGAGTAATATCTCCTATTTCTAGGTCAGA
*
63175949 AGGATTTTAGTCTAT
260 AGGATTCTAGTCTAT
63175964 ACA
1 ACA
63175967 AGAAGTTTCG
Statistics
Matches: 259, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
274 256 0.99
275 3 0.01
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (274 bp):
ACATAATGATAGAAGAAAAAATTTGTTTAAGGGAGTTATCAACATTCTGGTAGGAGGAAAACATA
TAGAATTGGTTTCGTCAAACTCAAAGGAGAAGGCTCATATGAGAAGTGTCTTGTCGATTCCAACC
ACTATTAAAAAACCCAAACCTTCCCTACGGGACCTTAGATTTTCAGAACAAGACAAAAGGGAGAT
TCTAAATATGGAAGGCAAATACCCTCTAAAGGTCTCGAGTAATATCTCCTATTTCTAGGTCAGAA
GGATTCTAGTCTAT
Found at i:63182575 original size:28 final size:28
Alignment explanation
Indices: 63182535--63182636 Score: 177
Period size: 28 Copynumber: 3.6 Consensus size: 28
63182525 TGACTTTCGA
*
63182535 CACTAAGTGTGCGAATTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
63182563 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* *
63182591 CACTAAGTGTGCGAGTTTAATGGCAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
63182619 CACTAAGTGTGCGAGTTT
1 CACTAAGTGTGCGAGTTT
63182637 GATTATTGAA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.30
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:63183278 original size:46 final size:47
Alignment explanation
Indices: 63183177--63183318 Score: 223
Period size: 46 Copynumber: 3.0 Consensus size: 47
63183167 TAATGGTCTA
* *
63183177 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCC
1 AAATTTGTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCC
* * * *
63183224 AATTTTGTATATACATGCTGTCAAATTTT-GTGTATAAATGCTGTCC
1 AAATTTGTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCC
63183270 AAATTTGTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCC
1 AAATTTGTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCC
63183317 AA
1 AA
63183319 TTTTATGTAT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 42 0.50
47 42 0.50
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (47 bp):
AAATTTGTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCC
Found at i:63183330 original size:23 final size:23
Alignment explanation
Indices: 63183186--63183330 Score: 157
Period size: 23 Copynumber: 6.2 Consensus size: 23
63183176 AAAATTGGTA
* *
63183186 TATATATGCTGCCCAATTTTGGTG
1 TATAAATGCTGTCCAATTTT-GTG
* *
63183210 AATAAATGCTGTCCAATTTTGTA
1 TATAAATGCTGTCCAATTTTGTG
* *
63183233 TATACATGCTGTCAAATTTTGTG
1 TATAAATGCTGTCCAATTTTGTG
* *
63183256 TATAAATGCTGTCCAAATTTGTA
1 TATAAATGCTGTCCAATTTTGTG
*
63183279 TATATATGCTG-CCAAATTTTGGTG
1 TATAAATGCTGTCC-AATTTT-GTG
* *
63183303 AATAAATGCTGTCCAATTTTATG
1 TATAAATGCTGTCCAATTTTGTG
63183326 TATAA
1 TATAA
63183331 CTGCATATAT
Statistics
Matches: 99, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
22 2 0.02
23 61 0.62
24 34 0.34
25 2 0.02
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (23 bp):
TATAAATGCTGTCCAATTTTGTG
Found at i:63184870 original size:268 final size:268
Alignment explanation
Indices: 63184393--63184923 Score: 1062
Period size: 268 Copynumber: 2.0 Consensus size: 268
63184383 ATCCATTTTA
63184393 AAAGACATTAAAAAAAAACCAAGAGAGGGTATGACAATCTATAAATTACAAGCACAAAATTTTAA
1 AAAGACATTAAAAAAAAACCAAGAGAGGGTATGACAATCTATAAATTACAAGCACAAAATTTTAA
63184458 AATATATATATAAATTCATGATATATTCAAAATAAAGCTAATGAAATAAACACTACATAAATAAT
66 AATATATATATAAATTCATGATATATTCAAAATAAAGCTAATGAAATAAACACTACATAAATAAT
63184523 AGTATTTAAATGCATTTTTTAGAAGAAAATCAAAATTCATAACATAATATACACATATTAATTTC
131 AGTATTTAAATGCATTTTTTAGAAGAAAATCAAAATTCATAACATAATATACACATATTAATTTC
63184588 CGTAAGTAAATAGATATGGGATGAATAACATAATATAAATAGTATATATACAATAATATAGAAAA
196 CGTAAGTAAATAGATATGGGATGAATAACATAATATAAATAGTATATATACAATAATATAGAAAA
63184653 AAAGGTTG
261 AAAGGTTG
63184661 AAAGACATTAAAAAAAAACCAAGAGAGGGTATGACAATCTATAAATTACAAGCACAAAATTTTAA
1 AAAGACATTAAAAAAAAACCAAGAGAGGGTATGACAATCTATAAATTACAAGCACAAAATTTTAA
63184726 AATATATATATAAATTCATGATATATTCAAAATAAAGCTAATGAAATAAACACTACATAAATAAT
66 AATATATATATAAATTCATGATATATTCAAAATAAAGCTAATGAAATAAACACTACATAAATAAT
63184791 AGTATTTAAATGCATTTTTTAGAAGAAAATCAAAATTCATAACATAATATACACATATTAATTTC
131 AGTATTTAAATGCATTTTTTAGAAGAAAATCAAAATTCATAACATAATATACACATATTAATTTC
63184856 CGTAAGTAAATAGATATGGGATGAATAACATAATATAAATAGTATATATACAATAATATAGAAAA
196 CGTAAGTAAATAGATATGGGATGAATAACATAATATAAATAGTATATATACAATAATATAGAAAA
63184921 AAA
261 AAA
63184924 AAGGTTGAGA
Statistics
Matches: 263, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
268 263 1.00
ACGTcount: A:0.53, C:0.09, G:0.10, T:0.29
Consensus pattern (268 bp):
AAAGACATTAAAAAAAAACCAAGAGAGGGTATGACAATCTATAAATTACAAGCACAAAATTTTAA
AATATATATATAAATTCATGATATATTCAAAATAAAGCTAATGAAATAAACACTACATAAATAAT
AGTATTTAAATGCATTTTTTAGAAGAAAATCAAAATTCATAACATAATATACACATATTAATTTC
CGTAAGTAAATAGATATGGGATGAATAACATAATATAAATAGTATATATACAATAATATAGAAAA
AAAGGTTG
Found at i:63187664 original size:20 final size:20
Alignment explanation
Indices: 63187639--63187685 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
63187629 AAGATCACGG
63187639 TGAGGAAAGCTTGTGCTTAA
1 TGAGGAAAGCTTGTGCTTAA
63187659 TGAGGAAAGCTTGTGCTTAA
1 TGAGGAAAGCTTGTGCTTAA
63187679 TGAGGAA
1 TGAGGAA
63187686 GCAAATTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.28
Consensus pattern (20 bp):
TGAGGAAAGCTTGTGCTTAA
Found at i:63187979 original size:9 final size:9
Alignment explanation
Indices: 63187962--63187991 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
63187952 CTTTTTCTCC
63187962 AAAACCCTA
1 AAAACCCTA
*
63187971 AAAATCCTA
1 AAAACCCTA
63187980 AAAACCCTA
1 AAAACCCTA
63187989 AAA
1 AAA
63187992 TCCAAAAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAACCCTA
Found at i:63187991 original size:17 final size:17
Alignment explanation
Indices: 63187962--63188001 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
63187952 CTTTTTCTCC
63187962 AAAACCCTAAAAATCCTA
1 AAAACCCTAAAAATCC-A
63187980 AAAACCCT-AAAATCCA
1 AAAACCCTAAAAATCCA
63187996 AAAACC
1 AAAACC
63188002 TACAAGTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 7 0.32
18 8 0.36
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAACCCTAAAAATCCA
Found at i:63201885 original size:20 final size:21
Alignment explanation
Indices: 63201862--63201910 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
63201852 AGTTTATATC
*
63201862 AATTTTAAT-CATTTTTATAG
1 AATTTTAATACATTTTTATAA
*
63201882 AATTTTAATACGTTTTTATAA
1 AATTTTAATACATTTTTATAA
63201903 AATTTTAA
1 AATTTTAA
63201911 ATATTTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (21 bp):
AATTTTAATACATTTTTATAA
Found at i:63202018 original size:11 final size:10
Alignment explanation
Indices: 63201854--63202029 Score: 59
Period size: 10 Copynumber: 18.1 Consensus size: 10
63201844 TTTTCATAAG
*
63201854 TTTATATCAAT
1 TTTATAT-ATT
63201865 TTTA-ATCATT
1 TTTATAT-ATT
* *
63201875 TTTATAGAAT
1 TTTATATATT
63201885 TTTA-ATACGTT
1 TTTATATA--TT
* *
63201896 TTTATAAAAT
1 TTTATATATT
*
63201906 TTTAAATATT
1 TTTATATATT
*
63201916 TTGA-ATATGT
1 TTTATATAT-T
*
63201926 TTTAT-TAAT
1 TTTATATATT
63201935 TTTAT-T-TT
1 TTTATATATT
63201943 TTTATA-ATT
1 TTTATATATT
* *
63201952 TTTTTATA-A
1 TTTATATATT
* *
63201961 TATATTAGATT
1 TTTA-TATATT
63201972 TTT-TATATT
1 TTTATATATT
* *
63201981 TTTATAAAAT
1 TTTATATATT
* * *
63201991 TATGTCTATT
1 TTTATATATT
*
63202001 TTCATATATT
1 TTTATATATT
63202011 TTTA-ATATT
1 TTTATATATT
63202020 TTTA-ATATT
1 TTTATATATT
63202029 T
1 T
63202030 AATGATCTTA
Statistics
Matches: 119, Mismatches: 34, Indels: 26
0.66 0.19 0.15
Matches are distributed among these distances:
8 6 0.05
9 45 0.38
10 54 0.45
11 12 0.10
12 2 0.02
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (10 bp):
TTTATATATT
Found at i:63204803 original size:143 final size:143
Alignment explanation
Indices: 63204620--63205046 Score: 773
Period size: 143 Copynumber: 3.0 Consensus size: 143
63204610 TAGTCACTGG
63204620 CCATGCGTATGTAACTCATGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAACT
1 CCATGCGTATGTAACTCATGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAACT
63204685 GATAGTCGGTACGTTGGGTACATGACTTGTGTATGGCATGACTTTACTAGCAACAGTGGAATTCA
66 GATAGTCGGTACGTTGGGTACATGACTTGTGTATGGCATGACTTTACTAGCAACAGTGGAATTCA
63204750 TAGCTCCATTAGA
131 TAGCTCCATTAGA
63204763 CCATGCGTATGTAACTCATGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAACT
1 CCATGCGTATGTAACTCATGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAACT
* * *
63204828 GATAGTCGGTACGTTGGTTACATGACTTGTGTATGCCATGACCTTACTAGCAACAGTGGAATTCA
66 GATAGTCGGTACGTTGGGTACATGACTTGTGTATGGCATGACTTTACTAGCAACAGTGGAATTCA
63204893 TAGCTCCATTAGA
131 TAGCTCCATTAGA
*
63204906 CCATGCGTATGTAACTCATGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAGCT
1 CCATGCGTATGTAACTCATGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAACT
* ** *
63204971 GATAGTCGGTACGCTGGGTACATGACTTGTGTATGGTGTGACTTTACTAGCAATAGTGGAATTCA
66 GATAGTCGGTACGTTGGGTACATGACTTGTGTATGGCATGACTTTACTAGCAACAGTGGAATTCA
*
63205036 TAGCTCAATTA
131 TAGCTCCATTA
63205047 AAGAGTTAAC
Statistics
Matches: 272, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
143 272 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (143 bp):
CCATGCGTATGTAACTCATGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAACT
GATAGTCGGTACGTTGGGTACATGACTTGTGTATGGCATGACTTTACTAGCAACAGTGGAATTCA
TAGCTCCATTAGA
Found at i:63206114 original size:20 final size:19
Alignment explanation
Indices: 63206089--63206181 Score: 61
Period size: 20 Copynumber: 4.8 Consensus size: 19
63206079 ATTCCAAAAA
63206089 TAATATTATTTTAATAGATT
1 TAATATTATTTTAATA-ATT
**
63206109 TAATATTAAATT-A-AATT
1 TAATATTATTTTAATAATT
*
63206126 TAATACTTATATTAATAGTATT
1 TAATA-TTATTTTAATA--ATT
*
63206148 T--TATTAATTTAAT-ATT
1 TAATATTATTTTAATAATT
63206164 TAAGTTATTATTTTAATA
1 TAA--TATTATTTTAATA
63206182 TTAAATTTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
16 4 0.07
17 8 0.14
18 7 0.12
19 10 0.18
20 24 0.42
22 4 0.07
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (19 bp):
TAATATTATTTTAATAATT
Found at i:63206248 original size:62 final size:59
Alignment explanation
Indices: 63206175--63206291 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 59
63206165 AAGTTATTAT
* * *
63206175 TTTAATATTAAATTTAATTTAATGTCTATCTTGTAGATAAATATTCTATTAATTTAATAAGA
1 TTTAATATTAAATTTAATCTAATATCTATC-T-T-GATAAATATTATATTAATTTAATAAGA
*
63206237 TTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAAT
1 TTTAATATTAAATTTAATCTAATATCTATCTTGATAAATATTATATTAATTTAAT
63206292 NNNNNNNNNN
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 22 0.43
60 1 0.02
61 1 0.02
62 27 0.53
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (59 bp):
TTTAATATTAAATTTAATCTAATATCTATCTTGATAAATATTATATTAATTTAATAAGA
Found at i:63211203 original size:20 final size:19
Alignment explanation
Indices: 63211178--63211270 Score: 61
Period size: 20 Copynumber: 4.8 Consensus size: 19
63211168 ATTCCAAAAA
63211178 TAATATTATTTTAATAGATT
1 TAATATTATTTTAATA-ATT
**
63211198 TAATATTAAATT-A-AATT
1 TAATATTATTTTAATAATT
*
63211215 TAATACTTATATTAATAGTATT
1 TAATA-TTATTTTAATA--ATT
*
63211237 T--TATTAATTTAAT-ATT
1 TAATATTATTTTAATAATT
63211253 TAAGTTATTATTTTAATA
1 TAA--TATTATTTTAATA
63211271 TTAAATTTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
16 4 0.07
17 8 0.14
18 7 0.12
19 10 0.18
20 24 0.42
22 4 0.07
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (19 bp):
TAATATTATTTTAATAATT
Found at i:63211337 original size:62 final size:59
Alignment explanation
Indices: 63211264--63211380 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 59
63211254 AAGTTATTAT
* * *
63211264 TTTAATATTAAATTTAATTTAATGTCTATCTTGTAGATAAATATTCTATTAATTTAATAAGA
1 TTTAATATTAAATTTAATCTAATATCTATC-T-T-GATAAATATTATATTAATTTAATAAGA
*
63211326 TTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAAT
1 TTTAATATTAAATTTAATCTAATATCTATCTTGATAAATATTATATTAATTTAAT
63211381 GTTAAAGTGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 22 0.43
60 1 0.02
61 1 0.02
62 27 0.53
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (59 bp):
TTTAATATTAAATTTAATCTAATATCTATCTTGATAAATATTATATTAATTTAATAAGA
Found at i:63212106 original size:27 final size:27
Alignment explanation
Indices: 63212056--63212140 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
63212046 TCACGTTCTG
* *
63212056 GCGGACTTACCTCATGTAAACTGTCTCA
1 GCGGACTTACC-CATGTTAACTGTCCCA
* *
63212084 GCGGACTTACCCATGTTCACTGTCCCG
1 GCGGACTTACCCATGTTAACTGTCCCA
* ** *
63212111 GAGGACTTACCTGTGTTTACTGTCCCA
1 GCGGACTTACCCATGTTAACTGTCCCA
63212138 GCG
1 GCG
63212141 AACTGTTTGT
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
27 36 0.77
28 11 0.23
ACGTcount: A:0.19, C:0.31, G:0.22, T:0.28
Consensus pattern (27 bp):
GCGGACTTACCCATGTTAACTGTCCCA
Found at i:63216635 original size:33 final size:33
Alignment explanation
Indices: 63216598--63216674 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
63216588 GCAGACTATC
* *
63216598 TGTTCTATGTTT-CTTATCCCACCGAACTTTCTT
1 TGTTCTATGTTTAC-TATCCCAACGAACTATCTT
* *
63216631 TGTTCTGTGTTTACTATCCCAACGGACTATCTT
1 TGTTCTATGTTTACTATCCCAACGAACTATCTT
63216664 TGTTCTATGTT
1 TGTTCTATGTT
63216675 AATTGTCACA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
33 37 0.97
34 1 0.03
ACGTcount: A:0.16, C:0.23, G:0.13, T:0.48
Consensus pattern (33 bp):
TGTTCTATGTTTACTATCCCAACGAACTATCTT
Found at i:63216857 original size:58 final size:58
Alignment explanation
Indices: 63216756--63216893 Score: 143
Period size: 58 Copynumber: 2.4 Consensus size: 58
63216746 CTACCATAGT
* ** * ** * *
63216756 GTCTTTCATCTATGGTCTTACACCGTATACCTTATACTTTGTACTATAC-AGCCATGGC
1 GTCTTTCATCCATGGTCTTATGCCATATACCTTATACCATGTACCATACTA-CCATGAC
* * *
63216814 GTCTTTCATCCATGGTCTTATGCCATATACCTTTTACCATGTACCATGCTACCATGAT
1 GTCTTTCATCCATGGTCTTATGCCATATACCTTATACCATGTACCATACTACCATGAC
* *
63216872 GTCTTTCATCCACGATCTTATG
1 GTCTTTCATCCATGGTCTTATG
63216894 TTACCTACCT
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
58 65 0.98
59 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (58 bp):
GTCTTTCATCCATGGTCTTATGCCATATACCTTATACCATGTACCATACTACCATGAC
Found at i:63220626 original size:22 final size:23
Alignment explanation
Indices: 63220600--63220642 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
63220590 TAACATCTTT
63220600 TTACCT-A-TTTACAAAATTACCC
1 TTACCTAACTTTA-AAAATTACCC
63220622 TTACCTAACTTTAAAAATTAC
1 TTACCTAACTTTAAAAATTAC
63220643 TCAATTGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 9 0.47
24 4 0.21
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (23 bp):
TTACCTAACTTTAAAAATTACCC
Found at i:63222072 original size:25 final size:25
Alignment explanation
Indices: 63222036--63222085 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
63222026 TCATTCATAT
63222036 CTATGTCACTAAATATATTTAAATA
1 CTATGTCACTAAATATATTTAAATA
* *
63222061 CTATGTCCCTAAATGTATTTAAATA
1 CTATGTCACTAAATATATTTAAATA
63222086 TGTAGTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.14, G:0.06, T:0.40
Consensus pattern (25 bp):
CTATGTCACTAAATATATTTAAATA
Found at i:63230656 original size:16 final size:16
Alignment explanation
Indices: 63230635--63230666 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63230625 TAACTTATTT
63230635 CATTTCTAGTCAAAAC
1 CATTTCTAGTCAAAAC
*
63230651 CATTTCTAGTCCAAAC
1 CATTTCTAGTCAAAAC
63230667 TTTATAACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.31
Consensus pattern (16 bp):
CATTTCTAGTCAAAAC
Found at i:63234415 original size:12 final size:13
Alignment explanation
Indices: 63234385--63234417 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
63234375 TGCTATCTGG
63234385 TACACATAGTAGCC
1 TACACATAGTA-CC
63234399 TACACATAGTA-C
1 TACACATAGTACC
63234411 TACACAT
1 TACACAT
63234418 GTGACCAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
14 11 0.58
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.24
Consensus pattern (13 bp):
TACACATAGTACC
Found at i:63234446 original size:51 final size:52
Alignment explanation
Indices: 63234384--63234571 Score: 267
Period size: 51 Copynumber: 3.7 Consensus size: 52
63234374 ATGCTATCTG
*
63234384 GTACACATAGTAGCCTACACATAGTACTACACATGTGACCAATA-CCATCCA
1 GTACACATAGTAGCCTACACATAGTACTACACATGTGACCAATAGCTATCCA
* * *
63234435 GTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAA-AGCTATCCG
1 GTACACATAGTAGCCTACACATAGTACTACACATGTGACCAATAGCTATCCA
* * *
63234486 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-ATAGCTATCTTA
1 GTACACATAGTAGCCTACACATAGTACTACACATGTGACCAATAGCTATC-CA
*
63234538 -TACTCATAGTAGCCTACACATAGTACTACACATG
1 GTACACATAGTAGCCTACACATAGTACTACACATG
63234572 AGTTCTCATG
Statistics
Matches: 123, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
50 2 0.02
51 121 0.98
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (52 bp):
GTACACATAGTAGCCTACACATAGTACTACACATGTGACCAATAGCTATCCA
Found at i:63236452 original size:263 final size:264
Alignment explanation
Indices: 63235985--63236513 Score: 1051
Period size: 263 Copynumber: 2.0 Consensus size: 264
63235975 ATTTTCGGAC
63235985 TTGAATTTTTGGGCTCGGATCGAGTCAGGTGGGCTCTAATGAATTTAGATAATTTTGAATTTTAT
1 TTGAATTTTTGGGCTCGGATCGAGTCAGGTGGGCTCTAATGAATTTAGATAATTTTGAATTTTAT
63236050 AAGTTATAAATATTTTAATTATGAATGTAATAATTCATTTTAGTTTTATACAATGACAACACAAT
66 AAGTTATAAATATTTTAATTATGAATGTAATAATTCATTTTAGTTTTATACAATGACAACACAAT
63236115 TCAAATTTGCTTTACAAAAATCATAAATTATATATATTTAATAAAGTTATTTTATATAAAATATA
131 TCAAATTTGCTTTACAAAAATCATAAATTATATATATTTAATAAAGTTATTTTATATAAAATATA
63236180 TCAAAGTGCTTATTGTATTTAAAACTTATTATTTTATGATATTATATGAATTAAAG-AAATATAT
196 TCAAAGTGCTTATTGTATTTAAAACTTATTATTTTATGATATTATATGAATTAAAGAAAATATAT
63236244 TTTA
261 TTTA
63236248 TTGAATTTTTGGGCTCGGATCGAGTCAGGTGGGCTCTAATGAATTTAGATAATTTTGAATTTTAT
1 TTGAATTTTTGGGCTCGGATCGAGTCAGGTGGGCTCTAATGAATTTAGATAATTTTGAATTTTAT
63236313 AAGTTATAAATATTTTAATTATGAATGTAATAATTCATTTTAGTTTTATACAATGACAACACAAT
66 AAGTTATAAATATTTTAATTATGAATGTAATAATTCATTTTAGTTTTATACAATGACAACACAAT
63236378 TCAAATTTGCTTTACAAAAATCATAAATTATATATATTTAATAAAGTTATTTTATATAAAATATA
131 TCAAATTTGCTTTACAAAAATCATAAATTATATATATTTAATAAAGTTATTTTATATAAAATATA
63236443 TCAAAGTGCTTATTGTATTTAAAACTTATTATTTTATGATATTATATGAATTAAAGAAAATATAT
196 TCAAAGTGCTTATTGTATTTAAAACTTATTATTTTATGATATTATATGAATTAAAGAAAATATAT
63236508 TTTA
261 TTTA
63236512 TT
1 TT
63236514 TATATTATAT
Statistics
Matches: 265, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
263 251 0.95
264 14 0.05
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (264 bp):
TTGAATTTTTGGGCTCGGATCGAGTCAGGTGGGCTCTAATGAATTTAGATAATTTTGAATTTTAT
AAGTTATAAATATTTTAATTATGAATGTAATAATTCATTTTAGTTTTATACAATGACAACACAAT
TCAAATTTGCTTTACAAAAATCATAAATTATATATATTTAATAAAGTTATTTTATATAAAATATA
TCAAAGTGCTTATTGTATTTAAAACTTATTATTTTATGATATTATATGAATTAAAGAAAATATAT
TTTA
Found at i:63237020 original size:24 final size:24
Alignment explanation
Indices: 63236967--63237012 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
63236957 TCTTTCTAGA
* *
63236967 ATATTTAGTATTTATTAGTATAAT
1 ATATTTAGCATTTATTAGAATAAT
63236991 ATATTTAGCATTTATTAGAATA
1 ATATTTAGCATTTATTAGAATA
63237013 GTTTATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATTTAGCATTTATTAGAATAAT
Found at i:63241295 original size:24 final size:24
Alignment explanation
Indices: 63241245--63241296 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
63241235 TTTCTAGAAG
* *
63241245 ATTTAGTATTTATTAGTAGAATAT
1 ATTTAGCATTTATTAGCAGAATAT
* *
63241269 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCAGAATAT
63241293 ATTT
1 ATTT
63241297 GACCTACTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCAGAATAT
Found at i:63246566 original size:42 final size:42
Alignment explanation
Indices: 63246507--63246675 Score: 338
Period size: 42 Copynumber: 4.0 Consensus size: 42
63246497 ATAAGGTGAG
63246507 AGTTTTTAAATCTTACTTCAACCTACATTGCCGTTTTCAATC
1 AGTTTTTAAATCTTACTTCAACCTACATTGCCGTTTTCAATC
63246549 AGTTTTTAAATCTTACTTCAACCTACATTGCCGTTTTCAATC
1 AGTTTTTAAATCTTACTTCAACCTACATTGCCGTTTTCAATC
63246591 AGTTTTTAAATCTTACTTCAACCTACATTGCCGTTTTCAATC
1 AGTTTTTAAATCTTACTTCAACCTACATTGCCGTTTTCAATC
63246633 AGTTTTTAAATCTTACTTCAACCTACATTGCCGTTTTCAATC
1 AGTTTTTAAATCTTACTTCAACCTACATTGCCGTTTTCAATC
63246675 A
1 A
63246676 CCTCCGGAAC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 127 1.00
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.43
Consensus pattern (42 bp):
AGTTTTTAAATCTTACTTCAACCTACATTGCCGTTTTCAATC
Found at i:63247156 original size:6 final size:6
Alignment explanation
Indices: 63247145--63247176 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
63247135 CACGGCCTCG
63247145 CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA CC
1 CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA CC
63247177 GTCGGCGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.69, G:0.00, T:0.16
Consensus pattern (6 bp):
CCTCCA
Found at i:63249738 original size:16 final size:16
Alignment explanation
Indices: 63249713--63249747 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
63249703 TCTCCTTTTT
*
63249713 TTTTCCTTCTTTTTCC
1 TTTTCCTTCTTTCTCC
*
63249729 TTTTCTTTCTTTCTCC
1 TTTTCCTTCTTTCTCC
63249745 TTT
1 TTT
63249748 CCTCCTACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTCCTTCTTTCTCC
Found at i:63250350 original size:24 final size:25
Alignment explanation
Indices: 63250308--63250361 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
63250298 ATATTTACAA
* * *
63250308 TTTTTTAAATTAGATAAATATGTCG
1 TTTTTTAAATTAGACAAATAGGCCG
*
63250333 TTTTTT-AATTAGCCAAATAGGCCG
1 TTTTTTAAATTAGACAAATAGGCCG
63250357 TTTTT
1 TTTTT
63250362 GGAGAGAGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.48
Consensus pattern (25 bp):
TTTTTTAAATTAGACAAATAGGCCG
Found at i:63253198 original size:40 final size:40
Alignment explanation
Indices: 63253144--63253221 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
63253134 ATATCAGGAA
* * *
63253144 TTAGCCATGAATCTATCATATCGTCTATTATGTGAGCCCT
1 TTAGCCATAAATCTATCATATCGTCCATTATATGAGCCCT
*
63253184 TTAGTCATAAATCTATCATATCGTCCATTATATGAGCC
1 TTAGCCATAAATCTATCATATCGTCCATTATATGAGCC
63253222 ATCGAGACCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (40 bp):
TTAGCCATAAATCTATCATATCGTCCATTATATGAGCCCT
Found at i:63254518 original size:25 final size:24
Alignment explanation
Indices: 63254490--63254536 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
63254480 ATCCGAGCAA
*
63254490 TATAACGGGAAGCTCACAAAGAGCC
1 TATAACAGGAAGCTC-CAAAGAGCC
*
63254515 TATAACAGGTAGCTCCAAAGAG
1 TATAACAGGAAGCTCCAAAGAG
63254537 TAATTAACGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.15
Consensus pattern (24 bp):
TATAACAGGAAGCTCCAAAGAGCC
Found at i:63254544 original size:24 final size:24
Alignment explanation
Indices: 63254492--63254599 Score: 94
Period size: 24 Copynumber: 4.5 Consensus size: 24
63254482 CCGAGCAATA
*
63254492 TAACGGGAAGCTCACAAAGAGCCT-A-
1 TAACGGGTAGCTC-CAAAGAG--TAAT
*
63254517 TAACAGGTAGCTCCAAAGAGTAAT
1 TAACGGGTAGCTCCAAAGAGTAAT
* *
63254541 TAACGGGTAGCTTCAAAAAGTAAT
1 TAACGGGTAGCTCCAAAGAGTAAT
** ** *
63254565 TAACGAATAGCTCTGAAGAGCAAT
1 TAACGGGTAGCTCCAAAGAGTAAT
63254589 TAACGGGTAGC
1 TAACGGGTAGC
63254600 ACTTGATAGC
Statistics
Matches: 67, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 54 0.81
25 11 0.16
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.19
Consensus pattern (24 bp):
TAACGGGTAGCTCCAAAGAGTAAT
Found at i:63254671 original size:26 final size:26
Alignment explanation
Indices: 63254642--63254702 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
63254632 AGCACTAACA
*
63254642 GGAAGCTCACAAAGAGCC-TTTAATCG
1 GGAAGCTCACAAAGAGCCATATAAT-G
*
63254668 GGAAGCTCACGAAGAGCCATATAATG
1 GGAAGCTCACAAAGAGCCATATAATG
*
63254694 GGACGCTCA
1 GGAAGCTCA
63254703 TAAGAGCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 26 0.84
27 5 0.16
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.16
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCATATAATG
Found at i:63262398 original size:707 final size:710
Alignment explanation
Indices: 63261008--63262407 Score: 1920
Period size: 707 Copynumber: 2.0 Consensus size: 710
63260998 TATGGGTGAC
*
63261008 ATCTAAGTGTACTTTTTAGAAAAATTTGTACAAAGAACTTCTGTTTGTTAAGACATTGTTTTTTA
1 ATCTAAGTGTACTTTTTAGAAAAATTTGTACAAAGAACTTATGTTTGTTAAGACATTGTTTTTTA
* * *
63261073 TGAAACCTTGTGAAAATTCATGCTTTGGATATTAAATATTATCTGTTGTTTAATAAAGTTACTAT
66 TGAAACCTAGTGAAAATTCATGCTTTGGATATTAAATATTATATGATGTTTAATAAAGTTACTAT
* * * * *
63261138 ACTTGAGTTTATGCGCCATAGGATTTAAATATTATAATTACTCCAATAATGGTTTAATTCAAACA
131 ACTTAAGTTTATACACCATAAGATTTAAACATTATAATTACTCCAATAATGGTTTAATTCAAACA
* *
63261203 TTGAAGTTTTACAAAGCTATTGCCAGAACTGATTTTTTCAATTTAAGATGATTTCTAAGTAGTGA
196 TTGAAGTTTTACAAAGCTATTACCAGAACTGATATTTTCAATTTAAGATGATTTCTAAGTAGTGA
* ** * *
63261268 CACATTATACTCAAATTCTTTCTAAAGGATTGGGTTTGGCGTGTTACAGGAAACACACCCCGATT
261 CACATCATACTCAAATTCTTTCTAAAGGATCAGGTTTGGCGTGTTACAGGAAACAAACCCCAATT
* * *
63261333 TCTTCCAACACTCGCCTTTATGTCTGTTTCCATACAATTCACCACTCGATATATCAACATCTCTA
326 TCTTCCAACACTCGCCTTTATGTCTCTTTCCACACAATTCACAACTCGATATATCAACATCTCTA
* * * * * * *
63261398 ACTGAGCCTCTCACACTACCTACAGACATTGTTGACTGTCGATCTCGGCCTCTCTCGGATCTAGC
391 ACTGAGCCTCTCACACAACCTACAAACACTATCGACTATCGATCTCGGCCTCTCTCAGATCTAGC
** ** * *
63261463 AAATCTCAGAGCTAATCTCCAATGCTCTGGAGACTCCCTTGCCCGTTTAGGCAACAGATGAGAGC
456 AAATCTCAGAGCTAATCTCCAATGCTCTCAAGACTCCCTAACCCATTTAGGCAACAAATGAGAGC
* *
63261528 TAGAAGTCCAGACTCATTTCTCAAATGCTCCAGAAGGTTCCAATTTCTTGTCTAGGCCCATCACT
521 TAAAAGTCCAGACTCATTTCTCAAATGCTCCAGAAGGTTCCAATTTCTTGTCTAGGACCATCACT
* * * * *
63261593 TGCTTGACCATCTTTACCCGTTCAAAGAGGTCAGTGAACTATTTTATTCTATGTAAAACCAACTG
586 TACTCGACCATCTTTACCCATTCAAAGAGGTCAGTGAACTATTTTACTCTATGCAAAACCAACTG
* ** **
63261658 AACTATGAGCTCATCGTGCAAACCCTGAAGAAATCATTTACAAAACTTCTATTTGTACAT
651 AACTATGACCTCATCACGCAAACCCCAAAGAAATCATTTACAAAACTTCTATTTGTACAT
* *
63261718 ATCTAAGTGTA-TTTTTAGAAGAATTTGTACAAAGAACTTATGTTTGTTAAGACCTTG-TTTTTA
1 ATCTAAGTGTACTTTTTAGAAAAATTTGTACAAAGAACTTATGTTTGTTAAGACATTGTTTTTTA
*
63261781 TGAAACCTGAGTGAAAATTCATGTTTTGGATATTAAATATTATATGATGTTTAATAAAGTTACTA
66 TGAAACCT-AGTGAAAATTCATGCTTTGGATATTAAATATTATATGATGTTTAATAAAGTTACTA
* * *
63261846 TACTTAAGTTTATATACCATAAGATTTAACCATTATAATTACTTCAATAATGGTTTAATTCAAAC
130 TACTTAAGTTTATACACCATAAGATTTAAACATTATAATTACTCCAATAATGGTTTAATTCAAAC
* *
63261911 ATTGAAGTTTTACAAAGTTATTACCAGAACT-A-ATTTTGAATTTAAGATGATTTCTAAGTAGTG
195 ATTGAAGTTTTACAAAGCTATTACCAGAACTGATATTTTCAATTTAAGATGATTTCTAAGTAGTG
* ** *
63261974 ACACATCATGCTCGGATTCTTTCTAAAGGATCAGGTTTGGCGTGTTACA-GAAACAAACCTCAAT
260 ACACATCATACTCAAATTCTTTCTAAAGGATCAGGTTTGGCGTGTTACAGGAAACAAACCCCAA-
* * * *
63262038 TTTCTTCTAACACTCGCCTTTATGTCTCTTTCCACAGAATTCATAACTCGGTATATCAACATCTC
324 TTTCTTCCAACACTCGCCTTTATGTCTCTTTCCACACAATTCACAACTCGATATATCAACATCTC
* * * *
63262103 TAACTTG-GCCTTTCACACAACCTACAAACACTATCGGCTATTGATCTCGGCTCTCTCTTAGATC
389 TAAC-TGAGCCTCTCACACAACCTACAAACACTATCGACTATCGATCTCGGC-CTCTCTCAGATC
* * * * ** * *
63262167 TGGTAGAT-TCGGAGCTGGTCTCCTATGCTCTCAAGACTCTCTAACCCATTTAGGCAACAAATGA
452 TAGCAAATCTCAGAGCTAATCTCCAATGCTCTCAAGACTCCCTAACCCATTTAGGCAACAAATGA
* * **
63262231 GAGCTAAAAGTGCC-GACTCGTTTCTCAAATGCTCTAGAAGGTTCCGGTTTCTTGTCTAGGACCA
517 GAGCTAAAAGT-CCAGACTCATTTCTCAAATGCTCCAGAAGGTTCCAATTTCTTGTCTAGGACCA
* ** * * *
63262295 TCGCTTACTCGACCATCTTTGTCCATTCAGTA-AGGTCA-TCGAACTCTTTTACTCTATGCGAAA
581 TCACTTACTCGACCATCTTTACCCATTCA-AAGAGGTCAGT-GAACTATTTTACTCTATGCAAAA
*
63262358 CCAACTGAACTATGACCTCATCACGTAAACCCCAAAGAAATCATTTACAA
644 CCAACTGAACTATGACCTCATCACGCAAACCCCAAAGAAATCATTTACAA
63262408 CTTTCTTCTT
Statistics
Matches: 600, Mismatches: 83, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
706 12 0.02
707 361 0.60
708 35 0.06
709 181 0.30
710 11 0.02
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.34
Consensus pattern (710 bp):
ATCTAAGTGTACTTTTTAGAAAAATTTGTACAAAGAACTTATGTTTGTTAAGACATTGTTTTTTA
TGAAACCTAGTGAAAATTCATGCTTTGGATATTAAATATTATATGATGTTTAATAAAGTTACTAT
ACTTAAGTTTATACACCATAAGATTTAAACATTATAATTACTCCAATAATGGTTTAATTCAAACA
TTGAAGTTTTACAAAGCTATTACCAGAACTGATATTTTCAATTTAAGATGATTTCTAAGTAGTGA
CACATCATACTCAAATTCTTTCTAAAGGATCAGGTTTGGCGTGTTACAGGAAACAAACCCCAATT
TCTTCCAACACTCGCCTTTATGTCTCTTTCCACACAATTCACAACTCGATATATCAACATCTCTA
ACTGAGCCTCTCACACAACCTACAAACACTATCGACTATCGATCTCGGCCTCTCTCAGATCTAGC
AAATCTCAGAGCTAATCTCCAATGCTCTCAAGACTCCCTAACCCATTTAGGCAACAAATGAGAGC
TAAAAGTCCAGACTCATTTCTCAAATGCTCCAGAAGGTTCCAATTTCTTGTCTAGGACCATCACT
TACTCGACCATCTTTACCCATTCAAAGAGGTCAGTGAACTATTTTACTCTATGCAAAACCAACTG
AACTATGACCTCATCACGCAAACCCCAAAGAAATCATTTACAAAACTTCTATTTGTACAT
Found at i:63265775 original size:20 final size:19
Alignment explanation
Indices: 63265744--63265783 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
63265734 TAATTAGTTT
*
63265744 TAAATTAAACTTAATTTAA
1 TAAATTAAACTTAAATTAA
63265763 TAAATTAAAACTTAAATTAA
1 TAAATT-AAACTTAAATTAA
63265783 T
1 T
63265784 TAAGCTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAATTAAACTTAAATTAA
Found at i:63266649 original size:88 final size:88
Alignment explanation
Indices: 63266499--63266692 Score: 284
Period size: 88 Copynumber: 2.2 Consensus size: 88
63266489 CATAAAGCCC
* * *
63266499 TCAAACTTTCTTAGAAAAAGCAATTAAGCCTCTACAGTTTTTTGCACTCATTTGGGTACTTGAAC
1 TCAAACCTT-TTAAAAAAAGCAATTAAGCCTCTACAGTTTTTTGCACTCAATTGGGTACTTGAAC
63266564 TTTCAAAATGCATCAAAAAGACCA
65 TTTCAAAATGCATCAAAAAGACCA
* **
63266588 TCAAACCTTTTAAAAAAAGTAATTAAG-CTCCTACTTTTTTTTGCACTCAATTGGGTACTTGAAC
1 TCAAACCTTTTAAAAAAAGCAATTAAGCCT-CTACAGTTTTTTGCACTCAATTGGGTACTTGAAC
* *
63266652 TTTCAAAATGCATCAAAACGACCC
65 TTTCAAAATGCATCAAAAAGACCA
63266676 TCAAA-CTTTTAAAAAAA
1 TCAAACCTTTTAAAAAAA
63266693 TAAAATAAAA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
87 14 0.15
88 74 0.77
89 8 0.08
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (88 bp):
TCAAACCTTTTAAAAAAAGCAATTAAGCCTCTACAGTTTTTTGCACTCAATTGGGTACTTGAACT
TTCAAAATGCATCAAAAAGACCA
Found at i:63267223 original size:91 final size:92
Alignment explanation
Indices: 63267085--63267259 Score: 246
Period size: 91 Copynumber: 1.9 Consensus size: 92
63267075 TTTGAAATAT
** * * * *
63267085 TTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAATACCCAGTTGAGT-TAAGAAGAAAAAGCA
1 TTTGAGGACCTTTTTGATGCATTTTGAAAGTTCAAATACCCAATTGAGTGCAAAAAAAAAAAG-A
63267149 GGGGCTTAATTGTTT-TTTTAAAAGAAG
65 GGGGCTTAATTGTTTCTTTTAAAAGAAG
* * *
63267176 TTTGAGGACCTTTTTGATGCATTTTGAAAGTTCAAGTGCTCAATTGAGTGCAAAAAAAAAAAGAG
1 TTTGAGGACCTTTTTGATGCATTTTGAAAGTTCAAATACCCAATTGAGTGCAAAAAAAAAAAGAG
63267241 GGGCTTAATTGTTTCTTTT
66 GGGCTTAATTGTTTCTTTT
63267260 TTTAAAAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
91 59 0.81
92 14 0.19
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.36
Consensus pattern (92 bp):
TTTGAGGACCTTTTTGATGCATTTTGAAAGTTCAAATACCCAATTGAGTGCAAAAAAAAAAAGAG
GGGCTTAATTGTTTCTTTTAAAAGAAG
Found at i:63270547 original size:24 final size:23
Alignment explanation
Indices: 63270520--63270595 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 23
63270510 AGATATTTAT
*
63270520 ATTATTTATTTATATAATATATAA
1 ATTAATTATTTATATAATAT-TAA
** *
63270544 ATTAATTATAAAGTATATTATTAA
1 ATTAATTATTTA-TATAATATTAA
*
63270568 ATTAATTATATTATA-AATATTAT
1 ATTAATTAT-TTATATAATATTAA
63270591 ATTAA
1 ATTAA
63270596 GAAATAAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
23 11 0.26
24 23 0.55
25 8 0.19
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (23 bp):
ATTAATTATTTATATAATATTAA
Found at i:63270563 original size:12 final size:11
Alignment explanation
Indices: 63270534--63270577 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
63270524 TTTATTTATA
63270534 TAATATATAAAT
1 TAAT-TATAAAT
*
63270546 TAATTATAAAG
1 TAATTATAAAT
63270557 TATATTATTAAAT
1 TA-ATTA-TAAAT
63270570 TAATTATA
1 TAATTATA
63270578 TTATAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
11 10 0.36
12 12 0.43
13 6 0.21
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (11 bp):
TAATTATAAAT
Found at i:63270589 original size:14 final size:17
Alignment explanation
Indices: 63270557--63270594 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
63270547 AATTATAAAG
63270557 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
63270574 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
63270588 TATATTA
1 TATATTA
63270595 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:63270831 original size:15 final size:17
Alignment explanation
Indices: 63270813--63270844 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
63270803 CAGAATAGAA
63270813 AGAA-CAAA-GAAACAG
1 AGAAGCAAACGAAACAG
63270828 AGAAGCAAACGAAACAG
1 AGAAGCAAACGAAACAG
63270845 GGGAAGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 4 0.27
17 7 0.47
ACGTcount: A:0.62, C:0.16, G:0.22, T:0.00
Consensus pattern (17 bp):
AGAAGCAAACGAAACAG
Found at i:63271047 original size:3 final size:3
Alignment explanation
Indices: 63271039--63271547 Score: 1018
Period size: 3 Copynumber: 169.7 Consensus size: 3
63271029 GTTGAATAAA
63271039 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271087 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271135 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271183 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271231 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271279 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271327 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271375 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271423 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271471 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63271519 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
63271548 AGATGAGTGG
Statistics
Matches: 506, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 506 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:63274726 original size:45 final size:45
Alignment explanation
Indices: 63274662--63274755 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 45
63274652 AATAGATACT
* * * *
63274662 CGGTGGATTCAGTACATAGCAACCACCTTATTAATCAGTGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
* *
63274707 CGGTGGAATCAGCACATAGCAACCACTTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
63274752 CGGT
1 CGGT
63274756 TCACATAGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:63274818 original size:51 final size:50
Alignment explanation
Indices: 63274760--63274943 Score: 217
Period size: 51 Copynumber: 3.6 Consensus size: 50
63274750 TTCGGTTCAC
*
63274760 ATAGTAGCCTGCACATAGTACTACACATGTGATCATTACCATCCGATACGT
1 ATAGTAGCCTGCACATAGTACTACACACGTGATCA-TACCATCCGATACGT
* * *
63274811 ATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATTCGATACGT
1 ATAGTAGCCTGCACATAGTACTACACACGTGATC-ATACCATCCGATACGT
* * * * * * **
63274862 ATAGTAGCCTGCACATAGTACAACACATGCGA-CCTATCATTCCGGTACAC
1 ATAGTAGCCTGCACATAGTACTACACACGTGATCATACCA-TCCGATACGT
*
63274912 GTAGTAGCCTGCACATAGTACTACACACGTGA
1 ATAGTAGCCTGCACATAGTACTACACACGTGA
63274944 CCATCACTTT
Statistics
Matches: 112, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
49 2 0.02
50 35 0.31
51 74 0.66
52 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (50 bp):
ATAGTAGCCTGCACATAGTACTACACACGTGATCATACCATCCGATACGT
Found at i:63274940 original size:101 final size:102
Alignment explanation
Indices: 63274760--63274943 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 102
63274750 TTCGGTTCAC
* * * **
63274760 ATAGTAGCCTGCACATAGTACTACACATGTGATCATTACCATCCGATACGTATAGTAGCCTGCAC
1 ATAGTAGCCTGCACATAGTACAACACATGCGATCACTACCATCCGATACACATAGTAGCCTGCAC
63274825 ATAGTACTACACACGTGATCGAAACTATTCGATACGT
66 ATAGTACTACACACGTGATCGAAACTATTCGATACGT
* * *
63274862 ATAGTAGCCTGCACATAGTACAACACATGCGA-C-CTATCATTCCGGTACACGTAGTAGCCTGCA
1 ATAGTAGCCTGCACATAGTACAACACATGCGATCACTACCA-TCCGATACACATAGTAGCCTGCA
63274925 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
63274944 CCATCACTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.53
102 30 0.41
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (102 bp):
ATAGTAGCCTGCACATAGTACAACACATGCGATCACTACCATCCGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATTCGATACGT
Found at i:63278658 original size:37 final size:37
Alignment explanation
Indices: 63278616--63278688 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
63278606 TTTGTCCTCG
63278616 AATTTACCCAAAATGAGTTATTGACTACCCTTGGTCA
1 AATTTACCCAAAATGAGTTATTGACTACCCTTGGTCA
63278653 AATTTACCCAAAATGAGTTATTGACTACCCTTGGTC
1 AATTTACCCAAAATGAGTTATTGACTACCCTTGGTC
63278689 GACCGTAGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.33
Consensus pattern (37 bp):
AATTTACCCAAAATGAGTTATTGACTACCCTTGGTCA
Found at i:63283566 original size:51 final size:50
Alignment explanation
Indices: 63283405--63283629 Score: 211
Period size: 51 Copynumber: 4.4 Consensus size: 50
63283395 TTTGGTGGTT
* * * * * * *
63283405 TGCACATAGTACCACCCATGTGACCATTGTCATCC-GATACACGTGGTACCC
1 TGCACATAGTACTACACACGTGACCA-AGCCATCCAG-TACACGTAGTAGCC
* * * ** ** *
63283456 TACACATAGTATTACACACGTGATCAAGCTTTTTAGTTCACGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCAAGCCATCCAGTACACGTAGTAGCC
*
63283506 TGCACATAGTACTACACACGTGACCAAGGCCATCCAGTACACATAGTAGCC
1 TGCACATAGTACTACACACGTGACCAA-GCCATCCAGTACACGTAGTAGCC
* * *
63283557 TGCACATAGTACTACACATGTGACCATTATCTAT-CAGTACACGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCA--AGCCATCCAGTACACGTAGTAGCC
*
63283608 TGCACTTAGTACTACACACGTG
1 TGCACATAGTACTACACACGTG
63283630 TTCATAAGTA
Statistics
Matches: 140, Mismatches: 30, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
50 37 0.26
51 99 0.71
52 3 0.02
53 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (50 bp):
TGCACATAGTACTACACACGTGACCAAGCCATCCAGTACACGTAGTAGCC
Found at i:63285565 original size:25 final size:26
Alignment explanation
Indices: 63285534--63285591 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
63285524 GAGCTACTCG
63285534 ATATGGCTCACTTGGA-CTTCCCGAT
1 ATATGGCTCACTTGGAGCTTCCCGAT
* *
63285559 ATATGGCT-ATTTGGAGCTTCCCGTT
1 ATATGGCTCACTTGGAGCTTCCCGAT
63285584 A-ATGGCTC
1 ATATGGCTC
63285592 TTCGAAGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 12 0.41
25 17 0.59
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (26 bp):
ATATGGCTCACTTGGAGCTTCCCGAT
Found at i:63285689 original size:25 final size:25
Alignment explanation
Indices: 63285645--63285715 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
63285635 GGCTCTTATG
* *
63285645 AGCTTCCCGTTATAA-AGCTCGGATA
1 AGCTTCCCGTTA-AATGGCTCGCATA
* *
63285670 AGCTTCCCGTTAAATGGCTCACATG
1 AGCTTCCCGTTAAATGGCTCGCATA
* *
63285695 AGCTTCCCATTATATGGCTCG
1 AGCTTCCCGTTAAATGGCTCG
63285716 AGAGAGTGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
24 2 0.05
25 36 0.95
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (25 bp):
AGCTTCCCGTTAAATGGCTCGCATA
Found at i:63288270 original size:8 final size:8
Alignment explanation
Indices: 63288228--63288271 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
63288218 TTTTAAAAGA
63288228 AAATTATTT
1 AAATT-TTT
63288237 -AATTTTT
1 AAATTTTT
*
63288244 AACTTTTT
1 AAATTTTT
*
63288252 AATTTTTT
1 AAATTTTT
63288260 AAATTTTT
1 AAATTTTT
63288268 AAAT
1 AAAT
63288272 GAAAAGTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
7 3 0.10
8 28 0.90
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (8 bp):
AAATTTTT
Found at i:63289525 original size:1 final size:1
Alignment explanation
Indices: 63289519--63289549 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
63289509 TAAACATCCC
63289519 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
63289550 GAAATTGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:63291292 original size:14 final size:14
Alignment explanation
Indices: 63291273--63291311 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
63291263 TTGTTTTACT
*
63291273 GAAAATGGCTTCCG
1 GAAAATGACTTCCG
* *
63291287 GAAAATGATTTCTG
1 GAAAATGACTTCCG
63291301 GAAAATGACTT
1 GAAAATGACTT
63291312 ACTTTTTTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (14 bp):
GAAAATGACTTCCG
Found at i:63299114 original size:34 final size:35
Alignment explanation
Indices: 63299053--63299124 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
63299043 TGCATGTTAA
* * *
63299053 GTAAATGATGCGTCATCCTATGGCTGAATGTTG-T
1 GTAAATGATGAGTCATCCTATGACTGAATATTGAT
*
63299087 GTAAATGATGAGTTACTCC-ATGACTGAATATTGAT
1 GTAAATGATGAGTCA-TCCTATGACTGAATATTGAT
63299122 GTA
1 GTA
63299125 TCATGATGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 25 0.78
35 7 0.22
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (35 bp):
GTAAATGATGAGTCATCCTATGACTGAATATTGAT
Found at i:63301166 original size:42 final size:42
Alignment explanation
Indices: 63301107--63301493 Score: 522
Period size: 42 Copynumber: 9.2 Consensus size: 42
63301097 AAAGAAAACA
* * *
63301107 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCTACTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
63301149 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCACTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
63301191 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
63301233 TTCATTGCATATAGAGACCTAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
63301275 TTCATTGCATATAGTGACCCAAGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
** * *
63301317 TTCATTGCATTTAGAGGCCCATATATGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
** *
63301359 TTCATTGCATTTAGAGGCCCAGGCATGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
63301401 TTCATTACATTTAGAGGCCCAGGTGTGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* **
63301443 TTCATTGCATTTAAAGGCCGGGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
63301485 TTTATTGCA
1 TTCATTGCA
63301494 CTGTATATGA
Statistics
Matches: 313, Mismatches: 32, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 313 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:63302676 original size:151 final size:148
Alignment explanation
Indices: 63302324--63302746 Score: 562
Period size: 152 Copynumber: 2.8 Consensus size: 148
63302314 AAAATTTTGA
* *
63302324 TTTTTTTAAAAAGAGAAAGTTTAGATTTTAACAAATAAAAATCTGTTTTTTTAGTTATTTTAAAG
1 TTTTTTTAAAAGGAGAAAGTTTAGATTTTAA-AAATAAAAATCTGTTTTTTTAGTCATTTTAAAG
* * * *
63302389 TAAATTTTAAATTTTTAAAATAAAGTTTTGATTATTTTTCAACTATTTCAAAGTAAAAGCTTTAA
65 GAAAATTTAAAATTTTAAAATAAAGTTTTGATT-TTTTTCAACTATTTCAAAATAAAAGCTTTAA
63302454 ATTTTAAGAAAAATAGTGTT
129 ATTTTAAGAAAAATAGTGTT
*** *
63302474 TTTTAAAAAAAAAGGAGAAAGTCTAGATTTTAAAAGATAAAAATCTGTTTTTTTAGTCATTTTAA
1 TTTT--TTTAAAAGGAGAAAGTTTAGATTTTAAAA-ATAAAAATCTGTTTTTTTAGTCATTTTAA
* * *
63302539 AGGAAAGTTTAAAATTTTAAAATAAAATTTTTATTTTTTTCAACTATTTCAAAATAAAAGCTTT-
63 AGGAAAATTTAAAATTTTAAAATAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTA
*
63302603 AGTCTTTAAGAAAAATAGTGTT
128 AAT-TTTAAGAAAAATAGTGTT
* * *
63302625 TTTTTTTAAAAGGGAGAAAGTTTAGATTTTGAAAAATATAAATATGTTTTTTTAAAGTCATTTCA
1 TTTTTTTAAAA-GGAGAAAGTTTAGATTTT-AAAAATAAAAATCTGTTTTTTT--AGTCATTTTA
* * *
63302690 AAGGAAAATTTAAAATTTTAAAACAAAGCTTTGATTTTTTT-AACTATTTCATAATAA
62 AAGGAAAATTTAAAATTTTAAAATAAAGTTTTGATTTTTTTCAACTATTTCAAAATAA
63302747 GGTTTTGATT
Statistics
Matches: 239, Mismatches: 26, Indels: 15
0.85 0.09 0.05
Matches are distributed among these distances:
149 4 0.02
150 39 0.16
151 71 0.30
152 125 0.52
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (148 bp):
TTTTTTTAAAAGGAGAAAGTTTAGATTTTAAAAATAAAAATCTGTTTTTTTAGTCATTTTAAAGG
AAAATTTAAAATTTTAAAATAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAAAT
TTTAAGAAAAATAGTGTT
Found at i:63303292 original size:25 final size:24
Alignment explanation
Indices: 63303264--63303310 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
63303254 TCACTTGCAT
63303264 TTATACA-TTATATATTTAATGTTAA
1 TTATACACTT-TAT-TTTAATGTTAA
*
63303289 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
63303311 TTATATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAA
Found at i:63305580 original size:32 final size:32
Alignment explanation
Indices: 63305544--63305607 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
63305534 AAACATATTC
*
63305544 AAAAAGGGAATTTGCAACCATGCAAACACAAG
1 AAAAAGGGAATTTGCAACCATACAAACACAAG
63305576 AAAAAGGGAATTTGCAACCATACAAACACAAG
1 AAAAAGGGAATTTGCAACCATACAAACACAAG
63305608 TTCATTTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.52, C:0.19, G:0.17, T:0.12
Consensus pattern (32 bp):
AAAAAGGGAATTTGCAACCATACAAACACAAG
Found at i:63314963 original size:16 final size:16
Alignment explanation
Indices: 63314939--63314987 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
63314929 TTCGCTGTAT
63314939 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
63314955 TGGATTAGAGGCGTAA
1 TGGAATAGAGGCGTAA
63314971 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
63314987 T
1 T
63314988 AGCAAATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.35, C:0.06, G:0.37, T:0.22
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:63315018 original size:45 final size:44
Alignment explanation
Indices: 63314967--63315056 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
63314957 GATTAGAGGC
63314967 GTAATGGAATAGAGGCGTAATAGCAAATCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAG-AAATC-ATGTGTTTGGTTGAAT
* *
63315012 GTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
63315056 G
1 G
63315057 GAATAGATGT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 18 0.43
45 23 0.55
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.33
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
Found at i:63322340 original size:27 final size:27
Alignment explanation
Indices: 63322300--63322438 Score: 179
Period size: 27 Copynumber: 5.1 Consensus size: 27
63322290 TACACGTCAG
*
63322300 GAAAGGAATGCCTTTGTGGCGCAATAT
1 GAAAAGAATGCCTTTGTGGCGCAATAT
* **
63322327 AAAAAGAATGCCTTTGTGGCATAATAT
1 GAAAAGAATGCCTTTGTGGCGCAATAT
* *
63322354 GAAAAGAATGCCATTGTGGCACAATAT
1 GAAAAGAATGCCTTTGTGGCGCAATAT
* ** * *
63322381 GAAAGGAACACCTTTGGGGCGTAATAT
1 GAAAAGAATGCCTTTGTGGCGCAATAT
63322408 GAAAAGAATGCCTTTGTGGCGCAATAT
1 GAAAAGAATGCCTTTGTGGCGCAATAT
63322435 GAAA
1 GAAA
63322439 GGAACACCTG
Statistics
Matches: 93, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (27 bp):
GAAAAGAATGCCTTTGTGGCGCAATAT
Found at i:63322395 original size:54 final size:53
Alignment explanation
Indices: 63322300--63322465 Score: 215
Period size: 54 Copynumber: 3.1 Consensus size: 53
63322290 TACACGTCAG
* * * **
63322300 GAAAGGAATGCCTTTGTGGCGCAATATAAAAAGAATGCCTTTGTGGCATAATAT
1 GAAAAGAATGCCTTTGTGGCGCAATATGAAAGGAACACCTTTGTGGC-TAATAT
* * *
63322354 GAAAAGAATGCCATTGTGGCACAATATGAAAGGAACACCTTTGGGGCGTAATAT
1 GAAAAGAATGCCTTTGTGGCGCAATATGAAAGGAACACCTTTGTGGC-TAATAT
* *
63322408 GAAAAGAATGCCTTTGTGGCGCAATATGAAAGGAACACCTGTGTAGCTAATTAT
1 GAAAAGAATGCCTTTGTGGCGCAATATGAAAGGAACACCTTTGTGGCTAA-TAT
63322462 GAAA
1 GAAA
63322466 GGATAGTCTT
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 3 0.03
54 94 0.97
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (53 bp):
GAAAAGAATGCCTTTGTGGCGCAATATGAAAGGAACACCTTTGTGGCTAATAT
Found at i:63322477 original size:81 final size:81
Alignment explanation
Indices: 63322300--63322468 Score: 198
Period size: 81 Copynumber: 2.1 Consensus size: 81
63322290 TACACGTCAG
** * * **
63322300 GAAAGGAATGCCTTTGTGGCGCAATATAAAAAGAATGCCTTTGTGGCATAATATGAAAAGAATGC
1 GAAAGGAACACCTTTGGGGCGCAATATAAAAAGAATGCCTTTGTGGCACAATATGAAAAGAACAC
*
63322365 CATTGTGGCACAATAT
66 CATTGTAGCACAATAT
* * * *
63322381 GAAAGGAACACCTTTGGGGCGTAATATGAAAAGAATGCCTTTGTGGCGCAATATGAAAGGAACAC
1 GAAAGGAACACCTTTGGGGCGCAATATAAAAAGAATGCCTTTGTGGCACAATATGAAAAGAACAC
*
63322446 C-TGTGTAGCTA-ATTAT
66 CAT-TGTAGC-ACAATAT
63322462 GAAAGGA
1 GAAAGGA
63322469 TAGTCTTTGT
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 72 0.97
82 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (81 bp):
GAAAGGAACACCTTTGGGGCGCAATATAAAAAGAATGCCTTTGTGGCACAATATGAAAAGAACAC
CATTGTAGCACAATAT
Found at i:63325315 original size:12 final size:12
Alignment explanation
Indices: 63325298--63325335 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
63325288 AATTGTAAAC
*
63325298 AATTAAAATTTT
1 AATTAAAATTAT
63325310 AATT-AAA-TAT
1 AATTAAAATTAT
63325320 AATTAAAATTAT
1 AATTAAAATTAT
63325332 AATT
1 AATT
63325336 CTAAATGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
10 6 0.26
11 6 0.26
12 11 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
AATTAAAATTAT
Found at i:63343566 original size:130 final size:131
Alignment explanation
Indices: 63343333--63343594 Score: 501
Period size: 130 Copynumber: 2.0 Consensus size: 131
63343323 TAACAAATCT
63343333 CCACCTTGACTCATATTTCCACAACGTCATCTTTGCCAAGCCCCGCCACGGGCCCATTTTGAACT
1 CCACCTTGACTCATATTTCCACAACGTCATCTTTGCCAAGCCCCGCCACGGGCCCATTTTGAACT
63343398 ATACGAGGAATTAACTGAGTCGAATCTGTGCTTAGAAACTAGAAGACTTCTATCA-TCGACTTGA
66 ATACGAGGAATTAACTGAGTCGAATCTGTGCTTAGAAACTAGAAGACTTCTATCATTCGACTTGA
63343462 A
131 A
63343463 CCACCTTGACTCATATTTCCACAACGTCATCTTTGCCAAAG-CCCGCCACGGGCCCATTTTGAAC
1 CCACCTTGACTCATATTTCCACAACGTCATCTTTGCC-AAGCCCCGCCACGGGCCCATTTTGAAC
63343527 TATACGAGGAATTAACTGAGTCGAATCTGTGCTTAGAAACTAGAAGACTTCTATCATTCGACTTG
65 TATACGAGGAATTAACTGAGTCGAATCTGTGCTTAGAAACTAGAAGACTTCTATCATTCGACTTG
63343592 AA
130 AA
63343594 C
1 C
63343595 ACTACCAAAT
Statistics
Matches: 130, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
130 116 0.89
131 14 0.11
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (131 bp):
CCACCTTGACTCATATTTCCACAACGTCATCTTTGCCAAGCCCCGCCACGGGCCCATTTTGAACT
ATACGAGGAATTAACTGAGTCGAATCTGTGCTTAGAAACTAGAAGACTTCTATCATTCGACTTGA
A
Found at i:63345942 original size:40 final size:40
Alignment explanation
Indices: 63345887--63346021 Score: 200
Period size: 40 Copynumber: 3.4 Consensus size: 40
63345877 GTGTTATGCT
* * *
63345887 TTCTGTTTGGCGTGTTTCGGTTGGATCAGCTCTTATAAAC
1 TTCTGTTTGGTGTGTTTCGGTTGGATCAGCTCTTATGAGC
63345927 TTCTGTTTGGTGTGTTTCGGTTGGATCAGCTCTTATGAGC
1 TTCTGTTTGGTGTGTTTCGGTTGGATCAGCTCTTATGAGC
* *
63345967 TTCTGTCTGGTGTGCTTCGGTTGGA-CTAGCTCTTATGAGC
1 TTCTGTTTGGTGTGTTTCGGTTGGATC-AGCTCTTATGAGC
*
63346007 TTCTATTTGGTGTGT
1 TTCTGTTTGGTGTGT
63346022 CCGATAGGTT
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 85 0.99
ACGTcount: A:0.11, C:0.16, G:0.28, T:0.44
Consensus pattern (40 bp):
TTCTGTTTGGTGTGTTTCGGTTGGATCAGCTCTTATGAGC
Found at i:63348319 original size:25 final size:25
Alignment explanation
Indices: 63348291--63348377 Score: 86
Period size: 25 Copynumber: 3.5 Consensus size: 25
63348281 TAATCGAGAA
* *
63348291 GCTCATAAGAGCCATATGTCGGGAT
1 GCTCATAAGAGCCAAATATCGGGAT
* * *
63348316 GCTCCTAAGAGCTAAATAAT-GGGAA
1 GCTCATAAGAGCCAAAT-ATCGGGAT
* * *
63348341 GCTCGTGAGAGCCAAATATCGAGAT
1 GCTCATAAGAGCCAAATATCGGGAT
63348366 GCTCATAAGAGC
1 GCTCATAAGAGC
63348378 TGTGGTGTGT
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
24 2 0.04
25 45 0.94
26 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (25 bp):
GCTCATAAGAGCCAAATATCGGGAT
Found at i:63354789 original size:25 final size:24
Alignment explanation
Indices: 63354761--63354827 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 24
63354751 AAACTCATGT
* *
63354761 GAGCCATGTAAAGGGAAGCTCTTGC
1 GAGCCAT-TAAAGGGAAGCTCATAC
**
63354786 GAGCCAATTATCGGGAAGCTCATAC
1 GAGCC-ATTAAAGGGAAGCTCATAC
63354811 GAGCCA-TAAACGGGAAG
1 GAGCCATTAAA-GGGAAG
63354828 ATCAAGAGAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 2 0.06
24 7 0.21
25 23 0.68
26 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.30, T:0.16
Consensus pattern (24 bp):
GAGCCATTAAAGGGAAGCTCATAC
Found at i:63354865 original size:24 final size:24
Alignment explanation
Indices: 63354773--63354865 Score: 73
Period size: 24 Copynumber: 3.8 Consensus size: 24
63354763 GCCATGTAAA
*
63354773 GGGAAGCTCTTGCGAGCC-AATTAT
1 GGGAAGCTCATGCGAGCCAAATT-T
* **
63354797 CGGGAAGCTCATACGAGCCATAA-AC
1 -GGGAAGCTCATGCGAGCCA-AATTT
* * * *
63354822 GGGAAGATCAAGAGATCCAAATTT
1 GGGAAGCTCATGCGAGCCAAATTT
63354846 GGGAAGCTCATGCGAGCCAA
1 GGGAAGCTCATGCGAGCCAA
63354866 TATCAGAAAG
Statistics
Matches: 50, Mismatches: 15, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
23 2 0.04
24 30 0.60
25 16 0.32
27 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.28, T:0.17
Consensus pattern (24 bp):
GGGAAGCTCATGCGAGCCAAATTT
Found at i:63354961 original size:25 final size:25
Alignment explanation
Indices: 63354933--63354987 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
63354923 ATGCTTCTAC
63354933 GAGCTAAATAACGGGAAGCTCATAA
1 GAGCTAAATAACGGGAAGCTCATAA
* * *
63354958 GAGCCAAATATCGGGATGCTCATAA
1 GAGCTAAATAACGGGAAGCTCATAA
63354983 GAGCT
1 GAGCT
63354988 TTGATGTATC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.18
Consensus pattern (25 bp):
GAGCTAAATAACGGGAAGCTCATAA
Found at i:63355189 original size:21 final size:21
Alignment explanation
Indices: 63355134--63355189 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
63355124 TTATACATGG
*
63355134 TAAATATACATTTCACAAACA
1 TAAATATACATTTTACAAACA
* * *
63355155 T-AATATTCAATTTA-AACATA
1 TAAATATACATTTTACAA-ACA
63355175 TAAATATACATTTTA
1 TAAATATACATTTTA
63355190 GTTACACGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
19 2 0.07
20 13 0.48
21 12 0.44
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAATATACATTTTACAAACA
Found at i:63359771 original size:42 final size:42
Alignment explanation
Indices: 63359705--63359833 Score: 127
Period size: 42 Copynumber: 3.1 Consensus size: 42
63359695 AGTTAAGCAG
* * * *
63359705 AAACCAATAAGGGTTGAACGGAAGCTCGTAAGAGCTTAACGA
1 AAACCCATAAGGGTTAAACAGAAGCTCGTAAGAGCTAAACGA
* * *
63359747 AAACCCATAAGGGTTAAATAGAAGCTTAGT-AGAGCTGAAC-A
1 AAACCCATAAGGGTTAAACAGAAGC-TCGTAAGAGCTAAACGA
* * * *
63359788 GAAACTCATATGAGTTAAACAGAAGCTCGTAAGAGCTAAATGA
1 -AAACCCATAAGGGTTAAACAGAAGCTCGTAAGAGCTAAACGA
63359831 AAA
1 AAA
63359834 GTAAACATGA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
41 4 0.06
42 62 0.89
43 4 0.06
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (42 bp):
AAACCCATAAGGGTTAAACAGAAGCTCGTAAGAGCTAAACGA
Found at i:63359827 original size:21 final size:21
Alignment explanation
Indices: 63359725--63359827 Score: 57
Period size: 21 Copynumber: 4.9 Consensus size: 21
63359715 GGGTTGAACG
*
63359725 GAAGCTCGTAAGAGCTTAAC-
1 GAAGCTCGTAAGAGCTAAACA
* * * * * *
63359745 GAAAACCCATAAGGGTTAAATA
1 G-AAGCTCGTAAGAGCTAAACA
* *
63359767 GAAGCTTAGT-AGAGCTGAACA
1 GAAGC-TCGTAAGAGCTAAACA
* * * *
63359788 GAAACTCATATGAGTTAAACA
1 GAAGCTCGTAAGAGCTAAACA
63359809 GAAGCTCGTAAGAGCTAAA
1 GAAGCTCGTAAGAGCTAAA
63359828 TGAAAAGTAA
Statistics
Matches: 54, Mismatches: 25, Indels: 7
0.63 0.29 0.08
Matches are distributed among these distances:
20 3 0.06
21 49 0.91
22 2 0.04
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (21 bp):
GAAGCTCGTAAGAGCTAAACA
Found at i:63365593 original size:20 final size:19
Alignment explanation
Indices: 63365567--63365616 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
63365557 GGGACTAAAT
63365567 TGAAAAAATGTAAAATTTA
1 TGAAAAAATGTAAAATTTA
* * *
63365586 TGGAAAAATTCTAAATTTTA
1 T-GAAAAAATGTAAAATTTA
63365606 TGAAATAAATG
1 TGAAA-AAATG
63365617 GGTTGCTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.34
Consensus pattern (19 bp):
TGAAAAAATGTAAAATTTA
Found at i:63366359 original size:25 final size:24
Alignment explanation
Indices: 63366231--63366359 Score: 75
Period size: 25 Copynumber: 5.2 Consensus size: 24
63366221 CAGCTTTTAT
* * *
63366231 AAGCGTCCCGATATATGGCTCTTTG
1 AAGCTTCCCAATA-ATGGCTCTTCG
* *
63366256 TAAGCTTCCTGATTAATGGCTCTTCG
1 -AAGCTTCC-CAATAATGGCTCTTCG
*
63366282 GAGCTTCCCAAT-ATGGCTCGCTT-G
1 AAGCTTCCCAATAATGGCT--CTTCG
* * *
63366306 AA-CTTCCCGATATATGGCTATCCG
1 AAGCTTCCCAATA-ATGGCTCTTCG
* *
63366330 GAGCTTCCTAATTAATGGCTCTTCG
1 AAGCTTCCCAA-TAATGGCTCTTCG
63366355 AAGCT
1 AAGCT
63366360 ACCCGTTATT
Statistics
Matches: 77, Mismatches: 18, Indels: 17
0.69 0.16 0.15
Matches are distributed among these distances:
23 15 0.19
24 6 0.08
25 35 0.45
26 19 0.25
27 2 0.03
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (24 bp):
AAGCTTCCCAATAATGGCTCTTCG
Found at i:63366396 original size:24 final size:23
Alignment explanation
Indices: 63366369--63366416 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
63366359 TACCCGTTAT
63366369 TGGCTCGCATGAGCTTCCTGATTA
1 TGGCTCGCATGAGCTTCCT-ATTA
**
63366393 TGGCTCTTATGAGCTTCCTATTA
1 TGGCTCGCATGAGCTTCCTATTA
63366416 T
1 T
63366417 ACAGCCCGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.40
Consensus pattern (23 bp):
TGGCTCGCATGAGCTTCCTATTA
Found at i:63366407 original size:73 final size:72
Alignment explanation
Indices: 63366236--63366412 Score: 203
Period size: 73 Copynumber: 2.4 Consensus size: 72
63366226 TTTATAAGCG
* * *
63366236 TCCCGATATATGGCTCTTTGTAAGCTTCCTGATTAATGGCTCTTCGGAGCTTCCCAATATGGCTC
1 TCCCGATATATGGCTCTTTG--AGCTTCCTAATTAATGGCTCTTCGAAGCTACCCAATATGGCTC
*
63366301 GCTTGAACT
64 GCATGAACT
* ** **
63366310 TCCCGATATATGGCTATCCGGAGCTTCCTAATTAATGGCTCTTCGAAGCTACCCGTTATTGGCTC
1 TCCCGATATATGGCTCT-TTGAGCTTCCTAATTAATGGCTCTTCGAAGCTACCCAATA-TGGCTC
*
63366375 GCATGAGCT
64 GCATGAACT
*
63366384 TCCTGAT-TATGGCTCTTATGAGCTTCCTA
1 TCCCGATATATGGCTCTT-TGAGCTTCCTA
63366413 TTATACAGCC
Statistics
Matches: 86, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
73 50 0.58
74 35 0.41
75 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.34
Consensus pattern (72 bp):
TCCCGATATATGGCTCTTTGAGCTTCCTAATTAATGGCTCTTCGAAGCTACCCAATATGGCTCGC
ATGAACT
Found at i:63368398 original size:14 final size:16
Alignment explanation
Indices: 63368374--63368410 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
63368364 TAACAATATT
*
63368374 TAAAAATAAAAA-TTA
1 TAAAAATAAAAACTCA
63368389 TAAAAA-AAAAACTCA
1 TAAAAATAAAAACTCA
63368404 TAAAAAT
1 TAAAAAT
63368411 TCAATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (16 bp):
TAAAAATAAAAACTCA
Found at i:63373145 original size:5 final size:6
Alignment explanation
Indices: 63373113--63373142 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
63373103 AACTCCCTAT
63373113 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA
63373143 TTATGAAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATTAAA
Found at i:63373585 original size:22 final size:22
Alignment explanation
Indices: 63373560--63373607 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
63373550 TTTTAAAAAA
*
63373560 TTTAAAAAATATAAAAACTATT
1 TTTAAAAAATAAAAAAACTATT
*
63373582 TTT-AAAAATAAAAAAAGTATT
1 TTTAAAAAATAAAAAAACTATT
63373603 TTTAA
1 TTTAA
63373608 TATTTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
TTTAAAAAATAAAAAAACTATT
Found at i:63373597 original size:30 final size:30
Alignment explanation
Indices: 63373549--63373626 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 30
63373539 TTAATTAATT
**
63373549 TTTTTAAAAAATTTAAAAAATA-TAAAAACTA
1 TTTTT-AAAAATAAAAAAAATATTAAAAA-TA
* ***
63373580 TTTTTAAAAATAAAAAAAGTATTTTTAATA
1 TTTTTAAAAATAAAAAAAATATTAAAAATA
63373610 TTTTTAAAAATAAAAAA
1 TTTTTAAAAATAAAAAA
63373627 TTAATTAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 32 0.80
31 8 0.20
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (30 bp):
TTTTTAAAAATAAAAAAAATATTAAAAATA
Found at i:63390893 original size:25 final size:24
Alignment explanation
Indices: 63390865--63390942 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 24
63390855 CTATTCCAAA
63390865 ATTAATATTATTTTAATAGTTTAAT
1 ATTAATATTATTTTAATA-TTTAAT
* *
63390890 ATTAA-ATTTAATTTAATACTT-AT
1 ATTAATA-TTATTTTAATATTTAAT
* *
63390913 ATTAATAGTATTTTAGTAATTTAAT
1 ATTAATATTATTTTAAT-ATTTAAT
63390938 ATTAA
1 ATTAA
63390943 AGTGATTATC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
23 14 0.33
24 7 0.16
25 22 0.51
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (24 bp):
ATTAATATTATTTTAATATTTAAT
Found at i:63391080 original size:62 final size:62
Alignment explanation
Indices: 63390882--63391081 Score: 147
Period size: 62 Copynumber: 3.1 Consensus size: 62
63390872 TTATTTTAAT
* *
63390882 AGTTTAATATTAAATTTAATTTAATACTTATATTAATAGTATTTTAGTAATTTAATATTAAAGTG
1 AGTTTAATATTAAATTTAATTTAATA-TTA-ATCAAT--TA---TATTAATTTAATATTAAAGTG
63390947 ATT-
59 ATTA
* * * * * * * * ** * *
63390950 A-TCTTAATATAAAATTTAATTTAATATTTATCTATAAGATAAACATT-CTATT-ATTTTAATA
1 AGT-TTAATATTAAATTTAATTTAATATTAATCAATTATATTAA-TTTAATATTAAAGTGATTA
*
63391011 AGATTTAATATTAAATTTAATGTAATATTAATCAATTATATTAATTTAATATTAAAGTGATTA
1 AG-TTTAATATTAAATTTAATTTAATATTAATCAATTATATTAATTTAATATTAAAGTGATTA
63391074 AGTTTAAT
1 AGTTTAAT
63391082 CATAGTTGAA
Statistics
Matches: 98, Mismatches: 27, Indels: 20
0.68 0.19 0.14
Matches are distributed among these distances:
60 4 0.04
61 10 0.10
62 45 0.46
63 8 0.08
64 1 0.01
66 4 0.04
67 3 0.03
68 23 0.23
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (62 bp):
AGTTTAATATTAAATTTAATTTAATATTAATCAATTATATTAATTTAATATTAAAGTGATTA
Found at i:63403268 original size:16 final size:17
Alignment explanation
Indices: 63403247--63403280 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
63403237 AAATATTATG
63403247 AAATAAA-AACAAACAA
1 AAATAAATAACAAACAA
*
63403263 AAATAAATATCAAACAA
1 AAATAAATAACAAACAA
63403280 A
1 A
63403281 CACCATCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATAAATAACAAACAA
Found at i:63404127 original size:12 final size:12
Alignment explanation
Indices: 63404110--63404134 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63404100 AGCCCAAGTG
63404110 TGAATATTTATA
1 TGAATATTTATA
63404122 TGAATATTTATA
1 TGAATATTTATA
63404134 T
1 T
63404135 TTTTCCCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAATATTTATA
Found at i:63419553 original size:20 final size:20
Alignment explanation
Indices: 63419524--63419569 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
63419514 TAAATAGAAC
63419524 AAGACACAATTAATTAAGTT
1 AAGACACAATTAATTAAGTT
* **
63419544 AAGACCCAATTAATTCGGTT
1 AAGACACAATTAATTAAGTT
63419564 AAGACA
1 AAGACA
63419570 AGACACATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (20 bp):
AAGACACAATTAATTAAGTT
Found at i:63421523 original size:26 final size:25
Alignment explanation
Indices: 63421489--63421539 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
63421479 CAATTGTATA
**
63421489 GAAATAATATAAATAGTAAATAAAC
1 GAAATAATATAAATAAAAAATAAAC
63421514 GAAATTAATATAAATAAAAAATAAAC
1 GAAA-TAATATAAATAAAAAATAAAC
63421540 AATGACAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.24
Consensus pattern (25 bp):
GAAATAATATAAATAAAAAATAAAC
Found at i:63421647 original size:9 final size:9
Alignment explanation
Indices: 63421619--63421658 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
63421609 AACATAAATC
63421619 AAATAAAC-
1 AAATAAACG
* *
63421627 AAATGAAGG
1 AAATAAACG
63421636 AAATAAACG
1 AAATAAACG
63421645 AAATAAACG
1 AAATAAACG
63421654 AAATA
1 AAATA
63421659 TATAGAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
8 6 0.22
9 21 0.78
ACGTcount: A:0.68, C:0.07, G:0.12, T:0.12
Consensus pattern (9 bp):
AAATAAACG
Found at i:63423467 original size:44 final size:44
Alignment explanation
Indices: 63423415--63423524 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 44
63423405 TCTGCTCTCT
*
63423415 GCAACTTCAGAGAGATAAGATCTA-TCACTTTAATCCGCTCCACC
1 GCAACTTCAGGGAGATAAGAT-TATTCACTTTAATCCGCTCCACC
* ** * * *
63423459 GCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCTACT
1 GCAACTTCAGGGAGATAAGATTATTCACTTTAATCCGCTCCACC
63423503 GCAACTTCAGGGAGATAAGATT
1 GCAACTTCAGGGAGATAAGATT
63423525 TGTCATCTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 2 0.04
44 55 0.96
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
GCAACTTCAGGGAGATAAGATTATTCACTTTAATCCGCTCCACC
Found at i:63423708 original size:50 final size:50
Alignment explanation
Indices: 63423653--63423811 Score: 115
Period size: 50 Copynumber: 3.2 Consensus size: 50
63423643 TCGGGGAAAC
*
63423653 AAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTATACCACCAAGGAAGT
1 AAGATTCGCCGTCGTAGCTTCAATCTGTTCCAATATACCACCAAGGAAGT
* * * ** ** * * ** * **
63423703 AAGATTTGCTGTTGCGGCTTCAATCT-TTTTAAT-TGCAATGTTAGGGAAAC
1 AAGATTCGCCGTCGTAGCTTCAATCTGTTCCAATATACCA--CCAAGGAAGT
* * * *
63423753 AAGATTCGCCGTCGTAGCTTCAATCTGTTCCATTACACCGCCAAGAAAGT
1 AAGATTCGCCGTCGTAGCTTCAATCTGTTCCAATATACCACCAAGGAAGT
63423803 AAGATTCGC
1 AAGATTCGC
63423812 TGTTGCGGCT
Statistics
Matches: 72, Mismatches: 33, Indels: 8
0.64 0.29 0.07
Matches are distributed among these distances:
48 3 0.04
49 4 0.06
50 60 0.83
51 4 0.06
52 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (50 bp):
AAGATTCGCCGTCGTAGCTTCAATCTGTTCCAATATACCACCAAGGAAGT
Found at i:63423797 original size:100 final size:100
Alignment explanation
Indices: 63423620--63423927 Score: 465
Period size: 100 Copynumber: 3.1 Consensus size: 100
63423610 GACCTGATAT
* * *
63423620 CTTCAATCTATTTAATTGGAATGTCGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
* * *
63423685 CTATACCACCAAGGAAGTAAGATTTGCTGTTGCGG
66 CTACACCGCCAAGGAAGTAAGATTCGCTGTTGCGG
*
63423720 CTTCAATCTTTTTAATTGCAATGTTAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
* *
63423785 TTACACCGCCAAGAAAGTAAGATTCGCTGTTGCGG
66 CTACACCGCCAAGGAAGTAAGATTCGCTGTTGCGG
* *
63423820 CTTCAAT-ATTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
* * * * *
63423884 CTACACTGCCAGGGGAGTAAGATTCGCCGTTGCAG
66 CTACACCGCCAAGGAAGTAAGATTCGCTGTTGCGG
63423919 CTTCAATCT
1 CTTCAATCT
63423928 GCTCCACTAT
Statistics
Matches: 187, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
99 89 0.48
100 98 0.52
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
CTACACCGCCAAGGAAGTAAGATTCGCTGTTGCGG
Found at i:63423823 original size:50 final size:50
Alignment explanation
Indices: 63423669--63423826 Score: 129
Period size: 50 Copynumber: 3.2 Consensus size: 50
63423659 CGCCGTCGTA
* * * * *
63423669 GCTTCAATCTGTTCCACTATACCACCAAGGAAGTAAGATTTGCTGTTGCG
1 GCTTCAATCTGTTCCATTACACCGCCAAGAAAGTAAGATTCGCTGTTGCG
* ** * ** ** * * * * **
63423719 GCTTCAATCTTTTTAATTGCAATGTTAGGGAAA-CAAGATTCGCCGTCGTA
1 GCTTCAATCTGTTCCATTACACCGCCA-AGAAAGTAAGATTCGCTGTTGCG
63423769 GCTTCAATCTGTTCCATTACACCGCCAAGAAAGTAAGATTCGCTGTTGCG
1 GCTTCAATCTGTTCCATTACACCGCCAAGAAAGTAAGATTCGCTGTTGCG
63423819 GCTTCAAT
1 GCTTCAAT
63423827 ATTTTAATTG
Statistics
Matches: 73, Mismatches: 33, Indels: 4
0.66 0.30 0.04
Matches are distributed among these distances:
49 4 0.05
50 66 0.90
51 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (50 bp):
GCTTCAATCTGTTCCATTACACCGCCAAGAAAGTAAGATTCGCTGTTGCG
Found at i:63423958 original size:50 final size:51
Alignment explanation
Indices: 63423867--63423986 Score: 120
Period size: 50 Copynumber: 2.4 Consensus size: 51
63423857 TCGCCATCGT
* * * * * *
63423867 AGCTTCAATCTGTTCCACTACACTGCCAGGGGAGTAAGATTCGCCG-TTGC
1 AGCTTCAATCTGCTCCACTACAATGCCAAGAGAGTAAGATTCGCCGCCTAC
* * *
63423917 AGCTTCAATCTGCTCCACTATAATGCCAA-AGAGATAGGATTCGCTGCCTAC
1 AGCTTCAATCTGCTCCACTACAATGCCAAGAGAG-TAAGATTCGCCGCCTAC
63423968 AGCTTCAAT-TCGCTCCACT
1 AGCTTCAATCT-GCTCCACT
63423987 TCAGCTAATC
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
49 3 0.05
50 36 0.62
51 19 0.33
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (51 bp):
AGCTTCAATCTGCTCCACTACAATGCCAAGAGAGTAAGATTCGCCGCCTAC
Found at i:63424227 original size:267 final size:266
Alignment explanation
Indices: 63423753--63424364 Score: 981
Period size: 267 Copynumber: 2.3 Consensus size: 266
63423743 TTAGGGAAAC
* * * * * *
63423753 AAGATTCGCCGTCGTAGCTTCAATCTGTTCCATTACACCGCCAAGAAAGTAAGATTCGCTGTTGC
1 AAGATTCGCCGTCGTGGCTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCGCCGTTGC
*
63423818 GGCTTCAATATTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCC
66 GGCTTCAATCTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCC
* * *
63423883 ACTACACTGCCAGGGGAGTAAGATTCGCCGTTGCAGCTTCAATCTGCTCCACTATAATGCCAAAG
131 ACTACACCGCCAGGGGAGTAAGATTCGCCATTACAGCTTCAATCTGCTCCACTATAATGCCAAAG
* *
63423948 AGATAGGATTCGCTGCCTACAGCTTCAATTCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAG
196 AGATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAG
63424013 GGAGAT
261 GGAGAT
*
63424019 AAGATTCGCCTTCGTGGCTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCGCCGTTGC
1 AAGATTCGCCGTCGTGGCTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCGCCGTTGC
* * * *
63424084 GGCTTCAATCTTTTAAATTGCAATGTTGGGGAAACGAGATTTGCCGTCGTAGCTTTAATCTGTTC
66 GGCTTCAATCTTTT-AATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTC
* * * *
63424149 CACTACACCGCCAGGGGAGTAAGATTTGCCATTACGGCTTTAATCTGCTCCACTGTAATGCCAAA
130 CACTACACCGCCAGGGGAGTAAGATTCGCCATTACAGCTTCAATCTGCTCCACTATAATGCCAAA
63424214 GAGATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCA
195 GAGATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCA
63424279 GGGAGAT
260 GGGAGAT
* * * * *
63424286 AAGATTCGCCGTCGTGGCTTCAGTCTGCTCCACTACAACGCCGGGGAAATAAGATTCGCCGTTGT
1 AAGATTCGCCGTCGTGGCTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCGCCGTTGC
63424351 GGCTTCAATCTTTT
66 GGCTTCAATCTTTT
63424365 CCTTTGCAAC
Statistics
Matches: 318, Mismatches: 27, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
266 71 0.22
267 247 0.78
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (266 bp):
AAGATTCGCCGTCGTGGCTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCGCCGTTGC
GGCTTCAATCTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCC
ACTACACCGCCAGGGGAGTAAGATTCGCCATTACAGCTTCAATCTGCTCCACTATAATGCCAAAG
AGATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAG
GGAGAT
Found at i:63436425 original size:25 final size:25
Alignment explanation
Indices: 63436396--63436445 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
63436386 ACAATTGTAT
*
63436396 AGAAA-TAATATAAATAGTAAATAAA
1 AGAAATTAATATAAATAAT-AATAAA
63436421 AGAAATTAATATAAATAATAATAAA
1 AGAAATTAATATAAATAATAATAAA
63436446 CAATGACCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (25 bp):
AGAAATTAATATAAATAATAATAAA
Found at i:63436711 original size:21 final size:18
Alignment explanation
Indices: 63436681--63436721 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 18
63436671 AATATTCGTT
63436681 TAAAAAAATAAATATGTACA
1 TAAAAAAAT-AA-ATGTACA
63436701 TAAAAACAATAAATGTACA
1 TAAAAA-AATAAATGTACA
63436720 TA
1 TA
63436722 TATATAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.45
20 8 0.40
21 3 0.15
ACGTcount: A:0.63, C:0.07, G:0.05, T:0.24
Consensus pattern (18 bp):
TAAAAAAATAAATGTACA
Found at i:63436746 original size:22 final size:20
Alignment explanation
Indices: 63436721--63436762 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 20
63436711 AAATGTACAT
63436721 ATATATAAATTAAAATAATTAC
1 ATATATAAA--AAAATAATTAC
63436743 --ATATAAAAAAATAATTAC
1 ATATATAAAAAAATAATTAC
63436761 AT
1 AT
63436763 TATTTAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 6
0.75 0.00 0.25
Matches are distributed among these distances:
18 11 0.61
20 7 0.39
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
ATATATAAAAAAATAATTAC
Found at i:63442287 original size:19 final size:19
Alignment explanation
Indices: 63442242--63442289 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
63442232 CACTTTCTTT
*
63442242 TTTTTTGTTTTTTAATTCAC
1 TTTTTT-TTTTTCAATTCAC
***
63442262 GAATTTTTTTTCAATTCAC
1 TTTTTTTTTTTCAATTCAC
63442281 TTTTTTTTT
1 TTTTTTTTT
63442290 AAATTTCGTA
Statistics
Matches: 21, Mismatches: 7, Indels: 1
0.72 0.24 0.03
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.17, C:0.10, G:0.04, T:0.69
Consensus pattern (19 bp):
TTTTTTTTTTTCAATTCAC
Done.