Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 192 of 210
Found at i:63698153 original size:42 final size:42
Alignment explanation
Indices: 63698104--63698757 Score: 818
Period size: 42 Copynumber: 15.4 Consensus size: 42
63698094 CACATGGCAG
* * *
63698104 CATCGGCACCTT-GTGGCTAGGATGTGCGGAAGCCTCGTGCAC
1 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAC
* *
63698146 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* * * *
63698188 CATCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGGAG
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* * *
63698230 CATCGGCACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAGCAC
*
63698273 CATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTA-CAC
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCG-AGCAC
* *
63698315 CATCGACACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCCAC
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CAC
*
63698357 CATCGGCATCCTTGGTGCTTGG-TGTGCGGGAGCCTCGAGCAGAA
1 CATCGGCA-CCTTGGTGCTTGGATGTGCGGGAGCCTCGAGC--AC
*
63698401 CATCGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCG-GACAC
1 CATCGGCACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAG-CAC
** * **
63698443 TGTCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGAGCAC
1 CATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
*
63698486 CACCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* *
63698528 CATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* *
63698570 AACCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAC
1 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAC
* * *
63698613 CATCGGCACCTTGGTGCTGGGATGTACGGGAGCCTCGTGCAC
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* * *
63698655 CATCCGCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCCAT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CAC
*
63698697 CATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAG
1 CATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
**
63698740 CATCGATACCTTGGTGCT
1 CATCGGCACCTTGGTGCT
63698758 AGTGTCACGG
Statistics
Matches: 540, Mismatches: 53, Indels: 38
0.86 0.08 0.06
Matches are distributed among these distances:
41 1 0.00
42 340 0.63
43 171 0.32
44 28 0.05
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (42 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
Found at i:63698284 original size:85 final size:84
Alignment explanation
Indices: 63698104--63698757 Score: 825
Period size: 85 Copynumber: 7.7 Consensus size: 84
63698094 CACATGGCAG
* * * *
63698104 CATCGGCACCTT-GTGGCTAGGATGTGCGGAAGCCTCGTGCACCATCGGCACCTTGGTGCTGGGA
1 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGA
*
63698168 TGTGCGGGAGCCTCGAGCAG
65 TGTGCGGGAGCCTCGAGCAC
* * * *
63698188 CATCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGGAGCATCGGCACCTTGGTGCCTCGGA
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CTCGGA
* *
63698253 TGTGTGGGAGCCTCGAGCAG
65 TGTGCGGGAGCCTCGAGCAC
* *
63698273 CATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTA-CACCATCGACACCTTGGTGCTCGGA
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCG-AGCACCATCGGCACCTTGGTGCTCGGA
63698337 TGTGCGGGAGCCTCG-GCCAC
65 TGTGCGGGAGCCTCGAG-CAC
* * **
63698357 CATCGGCATCCTTGGTGCTTGG-TGTGCGGGAGCCTCGAGCAGAACATCGGCACCTCGGTGCTAT
1 CATCGGCA-CCTTGGTGCTTGGATGTGCGGGAGCCTCGAGC--ACCATCGGCACCTTGGTGCTCG
63698421 GATGTGCGGGAGCCTCG-GACAC
63 GATGTGCGGGAGCCTCGAG-CAC
** * ** * *
63698443 TGTCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGAGCACCACCGGCACCTTGGTGCTTGGA
1 CATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGA
63698508 TGTGCGGGAGCCTCGAGCAC
65 TGTGCGGGAGCCTCGAGCAC
* ** * *
63698528 CATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGCAGAACCGGCACCTTGGTGGCTTGGA
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGA
63698593 TGTGCGGGAGCCTCGAGCAC
65 TGTGCGGGAGCCTCGAGCAC
* * * *
63698613 CATCGGCACCTTGGTGCTGGGATGTACGGGAGCCTCGTGCACCATCCGCACCTTGGTGCTCGGAT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
*
63698678 GTGCGGGAGCCTCG-GCCAT
66 GTGCGGGAGCCTCGAG-CAC
* **
63698697 CATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGATACCTTGGTGCT
1 CATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
63698758 AGTGTCACGG
Statistics
Matches: 500, Mismatches: 56, Indels: 27
0.86 0.10 0.05
Matches are distributed among these distances:
83 3 0.01
84 168 0.34
85 255 0.51
86 55 0.11
87 19 0.04
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (84 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
GTGCGGGAGCCTCGAGCAC
Found at i:63698296 original size:127 final size:126
Alignment explanation
Indices: 63698104--63698757 Score: 820
Period size: 127 Copynumber: 5.1 Consensus size: 126
63698094 CACATGGCAG
* * * *
63698104 CATCGGCACCTT-GTGGCTAGGATGTGCGGAAGCCTCGTGCACCATCGGCACCTTGGTGCTGGGA
1 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
* * * *
63698168 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGGAG
65 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* * *
63698230 CATCGGCACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
* * * *
63698295 TGTGGGGGAGCCTCGTA-CACCATCGACACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCCAC
65 TGTGCGGGAGCCTCG-AGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CAC
* *
63698357 CATCGGCATCCTTGGTGCTTGG-TGTGCGGGAGCCTCGAGCAGAACATCGGCACCTCGGTGCTAT
1 CATCGGCA-CCTTGGTGCTTGGATGTGCGGGAGCCTCGAGC--ACCATCGGCACCTTGGTGCT-T
* * **
63698421 -GATGTGCGGGAGCCTCG-GACA-CTGTCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGAG
62 GGATGTGCGGGAGCCTCGAG-CAGC-ATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG
63698483 CAC
124 CAC
*
63698486 CACCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
* * *
63698551 GTACGGGAGCCTCGAGCAGAACCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAC
66 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAC
* * * * *
63698613 CATCGGCACCTTGGTGCTGGGATGTACGGGAGCCTCGTGCACCATCCGCACCTTGGTGCTCGGAT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
* *
63698678 GTGCGGGAGCCTCG-GCCATCATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAG
66 GTGCGGGAGCCTCGAG-CAGCATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
**
63698740 CATCGATACCTTGGTGCT
1 CATCGGCACCTTGGTGCT
63698758 AGTGTCACGG
Statistics
Matches: 461, Mismatches: 47, Indels: 39
0.84 0.09 0.07
Matches are distributed among these distances:
126 39 0.08
127 295 0.64
128 71 0.15
129 55 0.12
130 1 0.00
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (126 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
Found at i:63705856 original size:24 final size:24
Alignment explanation
Indices: 63705824--63705902 Score: 131
Period size: 24 Copynumber: 3.3 Consensus size: 24
63705814 CCGGTTAGGT
* *
63705824 TCCCGGCGGTGCTCCAGCGATCTA
1 TCCCGGCGGTGCTCCGGCGATCCA
*
63705848 TCCCGGCGGCGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
63705872 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
63705896 TCCCGGC
1 TCCCGGC
63705903 ATATAGAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.09, C:0.43, G:0.32, T:0.16
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGATCCA
Found at i:63705879 original size:13 final size:13
Alignment explanation
Indices: 63705861--63705902 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
63705851 CGGCGGCGCT
63705861 CCGGCGATCCATC
1 CCGGCGATCCATC
* *
63705874 CCGGCGGTGC-T-
1 CCGGCGATCCATC
63705885 CCGGCGATCCATC
1 CCGGCGATCCATC
63705898 CCGGC
1 CCGGC
63705903 ATATAGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
11 8 0.35
12 2 0.09
13 13 0.57
ACGTcount: A:0.10, C:0.45, G:0.31, T:0.14
Consensus pattern (13 bp):
CCGGCGATCCATC
Found at i:63706118 original size:85 final size:84
Alignment explanation
Indices: 63706001--63707689 Score: 1949
Period size: 85 Copynumber: 19.9 Consensus size: 84
63705991 CACATGGCAG
*
63706001 CATCGGCACCTTGGTGGCTCGGATTTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
* *
63706066 TGTGCGGGAGCCGCGACCA
66 TGTGCGGGAGCCTCGAGCA
* * * * *
63706085 CTATCGGCACCTTAGTGGCTCGGATATGCGGGAGACTCGAGCAGCATCGGCACCTTGCTGCTTGG
1 C-ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
*
63706150 ATGTGCGGGAGCCTCGAACA
65 ATGTGCGGGAGCCTCGAGCA
* * * *
63706170 GAATCGGCACCTTGGTGGCTCAGATGTGC-GGAGCCTTGAGC-CGCATCGGCACCTTGGTGCTGG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGCTTG
* * *
63706233 GATGTGCGAGAGCCCCGAGTCG
64 GATGTGCGGGAGCCTCGAG-CA
* * * *
63706255 TATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCATCGGCACCTTGCTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
63706320 TGTGCGGGAGCCTCGAGCA
66 TGTGCGGGAGCCTCGAGCA
* * * * * *
63706339 GAACCGGCACCTTGGTGGCTCCGATGTGCGGGAGCCTCGAGC-CGTATTGGCACCTTGGTGCTGG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGCTTG
*
63706403 GATGTGCGGGAGCCCCGAGC-
64 GATGTGCGGGAGCCTCGAGCA
* * * * *
63706423 CGTATCGGTACCTTGGTGGCTCGGATGTGCTGCA-CACTAGAGCAGCATCGGCACCTTGGTGCTT
1 C--ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGC-CTCGAGCACCATCGGCACCTTGGTGCTT
* *
63706487 GGATGTGCGGGAACCTTGAGCA
63 GGATGTGCGGGAGCCTCGAGCA
** * * * * *
63706509 CCATCGGCACCTTGGTGGCTCGGATGTGTAGGAGCCCCGAGGAGCATCGGCACCTTGGTCCTGGG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
* *
63706574 ATGTGCGAGAGCCTCGAGCCG
65 ATGTGCGGGAGCCTCGAG-CA
* * * ** * *
63706595 CATCGACACCTTGGTGGGTCAGATGTGCGGGAGCCTCGAGCACCGCCGGCAGCTTGGTGCTGGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
* * * *
63706660 TGTCCGAGAGACTCAAGCA
66 TGTGCGGGAGCCTCGAGCA
* *
63706679 GCATCGGGACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCATCGGCA-CTGTGGTGCTTG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCT-TGGTGCTTG
*
63706743 GATGTACGGGAGCCTCGAGCA
64 GATGTGCGGGAGCCTCGAGCA
* * * * * *
63706764 GCAGCGACACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCAGCGACACCTTGGTGCTTGG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
* *
63706829 ATGTGCGGAAGCC-CTGAGCCG
65 ATGTGCGGGAGCCTC-GAG-CA
* * **
63706850 CATCAGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGTATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
* *
63706915 TGTACGGGAACCTCGAGCA
66 TGTGCGGGAGCCTCGAGCA
* * * * * *
63706934 CCATCGGCACCTTGGTGGCACGGATGTGCGGGAGCCCCGAGGAGCATCGGTACCTTGGTGCTGGG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
* * *
63706999 ATGTGCGAGAGCCTCAAGCCG
65 ATGTGCGGGAGCCTCGAG-CA
* * ** * *
63707020 CATTGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCACTGTCGGCAGCTTGGTGCTGGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
* *
63707085 TGTGCGAGAGACTCGAGCA
66 TGTGCGGGAGCCTCGAGCA
63707104 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
*
63707169 ATGTGCGGGAGCCTCGAGGA
65 ATGTGCGGGAGCCTCGAGCA
*
63707189 GCAGCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
*
63707254 ATGTGTGGGAGCCTCGAGCA
65 ATGTGCGGGAGCCTCGAGCA
* * * * * * *
63707274 GAACTGGGAACTTAGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTGGG
1 CATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
*
63707339 ATGTGCGGGAGCCTCGAGCTG
65 ATGTGCGGGAGCCTCGAGC-A
* * *
63707360 CATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
*
63707425 TGTGGGGGAGCCTCGTA-CA
66 TGTGCGGGAGCCTCG-AGCA
* * ** * * *
63707444 CCATTGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAGCGGCATTGGCACCTTAGTGCTGGG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
*
63707509 ATGTGCGGGAGCCTCGACCA
65 ATGTGCGGGAGCCTCGAGCA
* * * * *
63707529 GCATTGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGGGGCTCG
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTT-GGTGCTTG
**
63707594 GATGTGCCAGAGCCTCG-GACA
64 GATGTGCGGGAGCCTCGAG-CA
* * *
63707615 CCATCGGCAACCTTGGT-GCTTGGATGTGCGGGAGCCTCAAGCACCATCGGCACCTTGGTGCCTA
1 -CATCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CTT
63707679 GGATGTGCGGG
63 GGATGTGCGGG
63707690 CTAAAGGAAA
Statistics
Matches: 1366, Mismatches: 205, Indels: 66
0.83 0.13 0.04
Matches are distributed among these distances:
84 82 0.06
85 1191 0.87
86 84 0.06
87 9 0.01
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (84 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
TGTGCGGGAGCCTCGAGCA
Found at i:63715461 original size:42 final size:42
Alignment explanation
Indices: 63715385--63715931 Score: 675
Period size: 42 Copynumber: 12.9 Consensus size: 42
63715375 AGAGACTCAA
*
63715385 GCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * ** *
63715428 GCACCTTGGTGCTTGGATGTGCAGGAGCCTCGAGCAGAACCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * *
63715470 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGTGCAGCATTG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * * *
63715513 GCACCTTGGTG-TTGGATGTGGGGGAGCCTCGTGCCCCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
*
63715554 GCACCTTGATGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * **
63715596 GTACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* *
63715638 GTACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * * *
63715681 GTACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCACCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* *
63715723 GCACCTTGGTGCCTCGGATGTTCGGGAGCCTCGAGCAGCATCG
1 GCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * * *
63715766 GCACATTGGTGCTTGGATGTGGGGGAGCCTCGTGCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
*
63715808 GCACCTTGGTGCTCGGATGTGCGGGAGCCTC-AGCCACTATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCG
* * * *
63715850 GTAACCTTGGTGCTCGAAAGTGCAGGAGCCTCGAGCACCATCG
1 G-CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * * *
63715893 ACAACTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
63715932 AAGCTAAAGT
Statistics
Matches: 434, Mismatches: 63, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
41 36 0.08
42 241 0.56
43 155 0.36
44 2 0.00
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:63715679 original size:85 final size:85
Alignment explanation
Indices: 63715385--63715931 Score: 708
Period size: 85 Copynumber: 6.5 Consensus size: 85
63715375 AGAGACTCAA
*
63715385 GCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGC
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGC
* ** *
63715450 AGGAGCCTCGAGCAGAACCG
66 GGGAGCCTCGAGCACCATCG
* * * *
63715470 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGTGCAGCATTGGCACCTTGGTG-TTGGATGTGG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGC
* *
63715534 GGGAGCCTCGTGCCCCATCG
66 GGGAGCCTCGAGCACCATCG
* *
63715554 GCACCTTGAT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGATGTGC
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGC
**
63715618 GGGAGCCTCGAGCAGAATCG
66 GGGAGCCTCGAGCACCATCG
* * * *
63715638 GTACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCACCATCGGTACCTTGGTGCTGGGATGTGC
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGC
* *
63715703 GGGAGCCTCGAGCAGCACCG
66 GGGAGCCTCGAGCACCATCG
* * * * *
63715723 GCACCTTGGTGCCTCGGATGTTCGGGAGCCTCGAGCAGCATCGGCACATTGGTGCTTGGATGTGG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGC
*
63715788 GGGAGCCTCGTGCACCATCG
66 GGGAGCCTCGAGCACCATCG
* * * * *
63715808 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTC-AGCCACTATCGGTAACCTTGGTGCTCGAAAGT
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGG-CACCTTGGTGCTTGGATGT
*
63715871 GCAGGAGCCTCGAGCACCATCG
64 GCGGGAGCCTCGAGCACCATCG
* * * *
63715893 ACAACTTGGT-GCTAGGATGTGCGGAAGCCTCGAGCACCA
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCA
63715932 AAGCTAAAGT
Statistics
Matches: 401, Mismatches: 56, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
83 41 0.10
84 91 0.23
85 267 0.67
86 2 0.00
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (85 bp):
GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGC
GGGAGCCTCGAGCACCATCG
Found at i:63715699 original size:127 final size:126
Alignment explanation
Indices: 63715385--63715931 Score: 693
Period size: 127 Copynumber: 4.3 Consensus size: 126
63715375 AGAGACTCAA
* *
63715385 GCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGC
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGC
* ** * *
63715450 AGGAGCCTCGAGCAGAACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGTGCAGCATTG
65 GGGAGCCTCGAGCACCACCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* * * * *
63715513 GCACCTTGGTG-TTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGATGCTCGGATGTGCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCG
* * * *
63715577 GGAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAATCG
66 GGAGCCTCGAGCACCACCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* * * *
63715638 GTACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCACCATCGGTACCTTGGTGCTGGGATGTGC
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGC
* *
63715703 GGGAGCCTCGAGCAGCACCGGCACCTTGGTGCCTCGGATGTTCGGGAGCCTCGAGCAGCATCG
65 GGGAGCCTCGAGCACCACCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* * * *
63715766 GCACATTGGTGCTTGGATGTGGGGGAGCCTCGTGCACCATCGGCACCTTGGTGCTCGGATGTGCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCG
* * * * * * *
63715831 GGAGCCTC-AGCCACTATCGGTAACCTTGGTGCTCGAAAGTGCAGGAGCCTCGAGCACCATCG
66 GGAGCCTCGAG-CACCACCGG-CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* * * *
63715893 ACAACTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
63715932 AAGCTAAAGT
Statistics
Matches: 359, Mismatches: 55, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
125 37 0.10
126 73 0.20
127 194 0.54
128 55 0.15
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (126 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCG
GGAGCCTCGAGCACCACCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
Found at i:63723535 original size:21 final size:21
Alignment explanation
Indices: 63723509--63723553 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
63723499 ATATAGACTC
63723509 CAAGGTTAGACTGGATGACAA
1 CAAGGTTAGACTGGATGACAA
63723530 CAAGGTTAGACTGGATGACAA
1 CAAGGTTAGACTGGATGACAA
63723551 CAA
1 CAA
63723554 AACCATTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.16, G:0.27, T:0.18
Consensus pattern (21 bp):
CAAGGTTAGACTGGATGACAA
Found at i:63724774 original size:42 final size:41
Alignment explanation
Indices: 63724713--63725005 Score: 300
Period size: 43 Copynumber: 6.9 Consensus size: 41
63724703 CCTAAAATTA
* *
63724713 GAGCACCATCGGCATCTTGGTGCTGCGATGCGCGGGAGCCTC
1 GAGCACCATCGGCACCTTGGTGCT-CGATGTGCGGGAGCCTC
* * *
63724755 GAGCAGCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTC
1 GAGCACCATCGGCACCTTGGTGC-TCGATGTGCGGGAGCCTC
* * *
63724797 GTGCACCATCGGCACTTTGGTGGCTCAGATGTGCGGGAGGCTC
1 GAGCACCATCGGCACCTTGGT-GCTC-GATGTGCGGGAGCCTC
**
63724840 GAGCGGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC
1 GAGCACCATCGGCACCTTGGT-GCTC-GATGTGCGGGAGCCTC
* *
63724883 GACCAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTC
1 GAGCACCATCGGCACCTTGGT-GCTCG-ATGTGCGGGAGCCTC
* * *
63724926 G-GACACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGTCTC
1 GAG-CACCATCGG-CACCTTGGTGC-TCGATGTGCGGGAGCCTC
* * *
63724969 CACCACCATCGGCACCTTGGTGCCTAGGATGTGCGGG
1 GAGCACCATCGGCACCTTGGTG-CT-CGATGTGCGGG
63725006 CTAAAGGAAA
Statistics
Matches: 214, Mismatches: 27, Indels: 19
0.82 0.10 0.07
Matches are distributed among these distances:
42 65 0.30
43 139 0.65
44 10 0.05
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (41 bp):
GAGCACCATCGGCACCTTGGTGCTCGATGTGCGGGAGCCTC
Found at i:63724903 original size:86 final size:84
Alignment explanation
Indices: 63724716--63725005 Score: 359
Period size: 86 Copynumber: 3.4 Consensus size: 84
63724706 AAAATTAGAG
* *
63724716 CACCATCGGCATCTTGGT-GCTGCGATGCGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
1 CACCATCGGCACCTTGGTGGCT-CGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
* **
63724780 GGATGTGGGGGAGCCTCGTG
65 GGATGTGCGGGAGCCTCGAC
* * *
63724800 CACCATCGGCACTTTGGTGGCTCAGATGTGCGGGAGGCTCGAGCGGCATCGGCACCTTGGTGGCT
1 CACCATCGGCACCTTGGTGGCTC-GATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
*
63724865 CGGATGTGCGGGAGCCTCGAC
64 TGGATGTGCGGGAGCCTCGAC
* * *
63724886 CAGCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCG-GACACCATCGGTAACCTTGGTGC
1 CACCATCGGCACCTTGGTGGCTCG-ATGTGCGGGAGCCTCGAG-CAGCATCGG-CACCTTGGTGC
* *
63724950 TTGGATGTGCGGGAGTCTCCAC
63 TTGGATGTGCGGGAGCCTCGAC
* *
63724972 CACCATCGGCACCTTGGTGCCTAGGATGTGCGGG
1 CACCATCGGCACCTTGGTGGCT-CGATGTGCGGG
63725006 CTAAAGGAAA
Statistics
Matches: 178, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
84 17 0.10
85 39 0.22
86 113 0.63
87 9 0.05
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.21
Consensus pattern (84 bp):
CACCATCGGCACCTTGGTGGCTCGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTG
GATGTGCGGGAGCCTCGAC
Found at i:63724960 original size:129 final size:127
Alignment explanation
Indices: 63724716--63725005 Score: 361
Period size: 129 Copynumber: 2.3 Consensus size: 127
63724706 AAAATTAGAG
* * * *
63724716 CACCATCGGCATCTTGGT-GCTGCGATGCGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
1 CACCATCGGCACCTTGGTGGCTG-GATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGCTC
* * * * * *
63724780 GGATGTGGGGGAGCCTCGTGCACCATCGGCACTTTGGTGGCTCAGATGTGCGGGAGGCTCGAG
65 GAATGTGCGGGAGCCTCGTGCACCATCGGAACCTTGGTGGCTCAGATGTGCGGGAGGCTCCAC
**
63724843 CGGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCT
1 CACCATCGGCACCTTGGTGGCT-GGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGT-GCT
** *
63724908 CGAATGTGCGGGAGCCTCG-GACACCATCGGTAACCTTGGT-GCTTGGATGTGCGGGAGTCTCCA
64 CGAATGTGCGGGAGCCTCGTG-CACCATCGG-AACCTTGGTGGCTCAGATGTGCGGGAGGCTCCA
63724971 C
127 C
*
63724972 CACCATCGGCACCTTGGTGCCTAGGATGTGCGGG
1 CACCATCGGCACCTTGGTGGCT-GGATGTGCGGG
63725006 CTAAAGGAAA
Statistics
Matches: 139, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
127 15 0.11
128 39 0.28
129 78 0.56
130 7 0.05
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.21
Consensus pattern (127 bp):
CACCATCGGCACCTTGGTGGCTGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGCTCG
AATGTGCGGGAGCCTCGTGCACCATCGGAACCTTGGTGGCTCAGATGTGCGGGAGGCTCCAC
Found at i:63729739 original size:43 final size:43
Alignment explanation
Indices: 63729692--63729797 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 43
63729682 GCACAACACA
* *
63729692 GGCACCTTGGTGGCTGGGATGCACCGGAGCCCCGAGCAGCATC
1 GGCACCTTGGTGGCTCGGATGCACCGGAGCCCCGAGCACCATC
* * ** *
63729735 GGCACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAGCACCATC
1 GGCACCTTGGTGGCTCGGATGCACCGGAGCCCCGAGCACCATC
** *
63729777 CACACCTTGGTGCCTCGGATG
1 GGCACCTTGGTGGCTCGGATG
63729798 TACATGACCC
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 32 0.64
43 18 0.36
ACGTcount: A:0.17, C:0.32, G:0.35, T:0.16
Consensus pattern (43 bp):
GGCACCTTGGTGGCTCGGATGCACCGGAGCCCCGAGCACCATC
Found at i:63730388 original size:43 final size:42
Alignment explanation
Indices: 63730282--63730406 Score: 180
Period size: 43 Copynumber: 2.9 Consensus size: 42
63730272 AGAGCCTCAA
* * * *
63730282 GCACCTTAGTGGCTTGGATATGTGGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
63730325 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCG
63730367 GCAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
1 GC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
63730407 AAGCTGAAGT
Statistics
Matches: 75, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
41 1 0.01
42 29 0.39
43 44 0.59
44 1 0.01
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:63731225 original size:42 final size:42
Alignment explanation
Indices: 63731154--63731320 Score: 228
Period size: 42 Copynumber: 3.9 Consensus size: 42
63731144 AGAGCCTCAA
* * *
63731154 GCACCATGGTGGCTCAGATATGCGGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
63731197 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCG
* *
63731239 GCAACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACTATCG
1 GC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * *
63731282 ACACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
63731321 AAGCTGAAGT
Statistics
Matches: 111, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
41 1 0.01
42 63 0.57
43 47 0.42
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:63731580 original size:23 final size:23
Alignment explanation
Indices: 63731549--63731603 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
63731539 GTGCTCCGAC
63731549 GATCCATCCGGTGGCACTCTGGT
1 GATCCATCCGGTGGCACTCTGGT
*
63731572 GATTCATCCGGTGGCACTCTGGT
1 GATCCATCCGGTGGCACTCTGGT
63731595 GATCCATCC
1 GATCCATCC
63731604 CGGTATATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.15, C:0.31, G:0.27, T:0.27
Consensus pattern (23 bp):
GATCCATCCGGTGGCACTCTGGT
Found at i:63731782 original size:42 final size:42
Alignment explanation
Indices: 63731707--63733529 Score: 982
Period size: 42 Copynumber: 42.3 Consensus size: 42
63731697 ACATGGCAGT
* *
63731707 ATCGGCACCTTGGTGGCTCGTATGTGCGAGAGCCTCGAGCACC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
63731750 ATCGGTACCTTGGTACCCGGATGTGCGAGAGCCTCGACCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
*
63731792 ATCGGCACCTTGGAGCTTC-GATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCACC
* * *
63731834 ATCGACACCTTGGTGGCTCGGGT-TGGCGGGGGCCTCGAG-ACC
1 ATCGGCACCTTGGT-GCTCGGATGT-GCGGGAGCCTCGAGCACC
* **********
63731876 --CAGG-GCNNNNNNNNNNGGATGTGCGGGAGCCTCGAGCACC
1 ATC-GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63731916 ATCGGCACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACC
63731959 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * **
63732001 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTTGAGCAGA
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* ** *
63732043 ACCGGCACCTTGGTGGCTCGGATGTATGGGAGCCTCGAGGACC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
*
63732086 ATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63732128 ATCGGTACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63732170 ATCGGCACCTTGGTGCCTCGGATGTGTGAGAACCTCGAGCAGC
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
63732213 ATAGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
*
63732255 GTCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCTACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC-ACC
* *
63732297 ATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACC
1 ATCGG-CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * * * *
63732340 ATCGACAACTTGGTGCTAGGATGCGCGGAAGCCTCAAACACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
** ** * ** ** * **
63732382 A-AAGCTAAAGTTGG-GCCCCTGTTTGTGCGGGAGTGTCGGGCTAAAA
1 ATCGGC--ACCTTGGTG-CTC-GGATGTGCGGGAGCCTCGAGC--ACC
** * *** * * *
63732428 AAAGTGTCCCCGTTTCAGACACATGAATGT-C----GCCTCGTAGC-GC
1 ATCG-G-CACC-TTGGTG-CTC--GGATGTGCGGGAGCCTCG-AGCACC
* * ** ** ** * ** * *
63732471 ATTGACCAAGTTTTTTTAGCTC-TTTAG-GGGGGAAGTGATATTGAGCAAGC
1 ATCG-GC-A-CCTTGGT-GCTCGGAT-GTGCGGG-A--G-CCTCGAGC-ACC
** ** ** * * * * *
63732521 AGGGGTTGTCCAGGGCACTGCTC--ATTCTCCGGGGATCCATCACAGCA-T
1 ATCGG--CACCTTGG---TGCTCGGA-TGTGC-GGGAGCC-TC-GAGCACC
* ** * * * * * * **
63732569 ATAGAAAAC--GATGCAGCGAGTTGTCCCGGTCCCTC---C-CC
1 ATCGGCACCTTGGTGC-TCG-GATGTGCGGGAGCCTCGAGCACC
* * * ** * * * * *
63732607 TTACAG-AACAAGAG-CCTCCAGCACCTTGGGCCCTTGGTCATGCC-GGAGCACATGGCAGC
1 AT-CGGCACCTTG-GTGCT-C-GGA---TGTG--C--GG-GA-GCCTCGAG--CA---C--C
* * *
63732666 ATCGGCACCTTGGTGGGTCAGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63732709 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * **
63732751 ATCGGCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAGT
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * **
63732794 ATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGA
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63732836 ACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAAC-CGC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC-C
* * *
63732879 ATCGGCACCTTGGTGCTGGGATGTGCGGGAACCCCGAGC-CGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-C
* * *
63732921 ATCGGCACCTTTGTGGCTCGGATGTGCGGGAGACTCGAGCAGC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63732964 ATCGGCACCTTGGTGCTTGAATGTGCGGGAGACTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63733006 ATCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCAAGC-CGC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC-C
* * *
63733049 ATCGGCACCTTGGTGTTGGGATGTGCGGGAGCCCCGAGC-CGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-C
* * *
63733091 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCAAGCAGC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63733134 ATCGGTACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63733176 ATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCCCGAGGAGC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63733219 ATCGGCACCTTGGTGCTGGGATGTCCAGGAGCCTCGAGC-CTC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-C
* * * *
63733261 ATCGGTACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * **
63733303 ATCGACACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCTGC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63733346 ATCGACACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63733388 ATCAGG-ACCTTGGTGGCTCGGATGTACGGGAGCCTCGACCAGC
1 ATC-GGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63733431 ATCGGCACCTTGGGGGCTGGGATGTGCGGGAGCCTCG-GACACC
1 ATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CACC
** ** *
63733474 ATCGGCAACCTTACTGCTTAGATGTGCGGGAGCCTCGACCACC
1 ATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
63733517 ATCGGCACCTTGG
1 ATCGGCACCTTGG
63733530 GGCCTAGTAT
Statistics
Matches: 1359, Mismatches: 312, Indels: 219
0.72 0.17 0.12
Matches are distributed among these distances:
38 5 0.00
39 16 0.01
40 10 0.01
41 11 0.01
42 657 0.48
43 551 0.41
44 27 0.02
45 5 0.00
46 5 0.00
47 2 0.00
48 11 0.01
49 14 0.01
50 16 0.01
51 8 0.01
52 4 0.00
53 2 0.00
55 3 0.00
57 1 0.00
58 4 0.00
59 6 0.00
60 1 0.00
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.20
Consensus pattern (42 bp):
ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
Found at i:63732001 original size:85 final size:85
Alignment explanation
Indices: 63731702--63733529 Score: 926
Period size: 85 Copynumber: 21.2 Consensus size: 85
63731692 AGAGCACATG
* * * * *
63731702 GCAGTATCGGCACCTTGGTGGCTCGTATGTGCGAGAGCCTCGAGCACCATCGGTACCTTGGTACC
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCC
*
63731767 -CGGATGTGCGAGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * *
63731787 CCACCATCGGCACCTTGGAGCTTC-GATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCC
* *
63731851 TCGGGT-TGGCGGGGGCCTCGA
65 TCGGATGT-GCGGGAGCCTCGA
* * **********
63731872 G-A-C-CCAGG-GCNNNNNNNNNNGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCC
1 GCAGCATC-GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCC
*
63731933 TCGGATGTGCAGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
63731954 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCT
* *
63732018 TGGATGTGCGGGAGCCTTGA
66 CGGATGTGCGGGAGCCTCGA
* * ** *
63732038 GCAGAACCGGCACCTTGGTGGCTCGGATGTATGGGAGCCTCGAGGACCATCGGCACCTTGGTG-C
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCC
*
63732102 TAGGATGTGCGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * *
63732123 GCACCATCGGTACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCT
* * *
63732188 CGGATGTGTGAGAACCTCGA
66 CGGATGTGCGGGAGCCTCGA
* * * * * *
63732208 GCAGCATAGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCGTCGGCACCTTGGTG-CT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCT
63732272 CGGATGTGCGGGAGCCTCG-
66 CGGATGTGCGGGAGCCTCGA
* * * * *
63732291 GCTACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGACAACTTGGTG-
1 GC-AGCATCGG-CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC
* * * *
63732355 CTAGGATGCGCGGAAGCCTCAA
64 CTCGGATGTGCGGGAGCCTCGA
* * ** ** * ** ** * ** ** *
63732377 ACACCA-AAGCTAAAGTTGG-GCCCCTGTTTGTGCGGGAGTGTCGGGCTAAAAAAAGTGTCCCCG
1 GCAGCATCGGC--ACCTTGGTG-CTC-GGATGTGCGGGAGCCTCGAGC--ACCATCG-G-CACC-
*** *
63732440 TTTCAGACACAT-GAATGT-C----GCCTCGTA
57 TTGGTG-C-C-TCGGATGTGCGGGAGCCTCG-A
* * ** ** ** * ** * * ** *
63732467 GC-GCATTGACCAAGTTTTTTTAGCTC-TTTAG-GGGGGAAGTGATATTGAGCAAGCAGGGGTTG
1 GCAGCATCG-GC-A-CCTTGGT-GCTCGGAT-GTGCGGG-A--G-CCTCGAGC-ACCATCGG--C
* * ** * * *
63732529 TCC-AGG-GCACTGCTCATTCTCCGGGGATCCATC-A
54 ACCTTGGTGC-CT-CGGA-TGTGC-GGGAGCC-TCGA
* ** * * * * * * ** * * * **
63732563 -CAGCATATAGAAAAC--GATGCAGCGAGTTGTCCCGGTCCCTC---C-CCTTACAG-AAC-AAG
1 GCAGC--ATCGGCACCTTGGTGC-TCG-GATGTGCGGGAGCCTCGAGCACCAT-CGGCACCTTGG
* * * * *
63732619 AGCCTCCAGCACCTTGGGCCCTTGGTCATGCC-GGA
61 TGCCT-C-GGA---TGTG--C--GG-GA-GCCTCGA
* * *
63732654 GCACATGGCAGCATCGGCACCTTGGTGGGTCAGATGTGCGGGAGCCTCGAGCAGCATCGGCACCT
1 G--CA--GC---ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCT
*
63732719 TGGTG-CTTGGATGTGCGGGAGCCTCGA
58 TGGTGCCTCGGATGTGCGGGAGCCTCGA
* * * * ** *
63732746 CCACCATCGGCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAGTATTGGCACCTTGGTG-C
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCC
*
63732810 TTGGATGTGCGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * *
63732831 GCAGAACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAAC-CGCATCGGCACCTTGGTG-
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGC
* * *
63732894 CTGGGATGTGCGGGAACCCCGA
64 CTCGGATGTGCGGGAGCCTCGA
* * * *
63732916 GCCGCATCGGCACCTTTGTGGCTCGGATGTGCGGGAGACTCGAGCAGCATCGGCACCTTGGTG-C
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCC
* * *
63732980 TTGAATGTGCGGGAGACTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * *
63733001 GCACCATCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCAAGC-CGCATCGGCACCTTGGTG-
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGC
* * *
63733064 TTGGGATGTGCGGGAGCCCCGA
64 CTCGGATGTGCGGGAGCCTCGA
* * * * *
63733086 GCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCAAGCAGCATCGGTACCTTGGTG-C
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCC
* *
63733150 TTGGATGTGTGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * *
63733171 GCACCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCCCGAGGAGCATCGGCACCTTGGTG-C
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCC
* * *
63733235 TGGGATGTCCAGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
** * * * * * *
63733256 GCCTCATCGGTACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCACCATCGACACCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCT
*
63733321 CGGATATGCGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* * * * * *
63733341 GCTGCATCGACACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAGCATCAGG-ACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATC-GGCACCTTGGTGCC
*
63733405 TCGGATGTACGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * **
63733426 CCAGCATCGGCACCTTGGGGGCTGGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCTTACTG
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTG
**
63733490 -CTTAGATGTGCGGGAGCCTCGA
63 CCTCGGATGTGCGGGAGCCTCGA
* *
63733512 CCACCATCGGCACCTTGG
1 GCAGCATCGGCACCTTGG
63733530 GGCCTAGTAT
Statistics
Matches: 1338, Mismatches: 311, Indels: 188
0.73 0.17 0.10
Matches are distributed among these distances:
82 57 0.04
83 7 0.01
84 183 0.14
85 852 0.64
86 83 0.06
87 10 0.01
88 6 0.00
89 11 0.01
90 19 0.01
91 16 0.01
92 11 0.01
93 14 0.01
94 13 0.01
95 7 0.01
96 6 0.00
97 10 0.01
98 16 0.01
99 3 0.00
100 3 0.00
101 3 0.00
102 6 0.00
103 2 0.00
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.20
Consensus pattern (85 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCT
CGGATGTGCGGGAGCCTCGA
Found at i:63732063 original size:127 final size:127
Alignment explanation
Indices: 63731707--63733529 Score: 1021
Period size: 127 Copynumber: 14.1 Consensus size: 127
63731697 ACATGGCAGT
* * * * *
63731707 ATCGGCACCTTGGTGGCTCGTATGTGCGAGAGCCTCGAGCACCATCGGTACCTTGGTACCCGGAT
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
* * *
63731772 GTGCGAGAGCCTCGACCACCATCGGCACCTTGG-AGCTTC-GATGTGCGGGAGCCTCGAGCACC
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC-TCGGATGTGCGGGAGCCTCGAGCACC
* * * * **********
63731834 ATCGACACCTTGGTGGCTCGGGT-TGGCGGGGGCCTCGAG-ACC--CAGG-GCNNNNNNNNNNGG
1 ATCGGCACCTTGGT-GCTCGGATGT-GCGGGAGCCTCGAGCACCATC-GGCACCTTGGTGCTCGG
* * *
63731894 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGCAGC
63 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
*
63731959 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATG
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATG
* ** * ** *
63732024 TGCGGGAGCCTTGAGCAGAACCGGCACCTTGGTGGCTCGGATGTATGGGAGCCTCGAGGACC
66 TGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63732086 ATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTGGGATG
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATG
* * * * * *
63732151 TGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGTGAGAACCTCGAGCAGC
66 TGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * * *
63732213 ATAGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCGTCGGCACCTTGGTGCTCGGATG
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATG
* *
63732278 TGCGGGAGCCTCG-GCTACCATCGGTAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACC
66 TGCGGGAGCCTCGAGC-ACCATCGG-CACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * * * * ** ** *
63732340 ATCGACAACTTGGTGCTAGGATGCGCGGAAGCCTCAAACACCA-AAGCTAAAGTTGG-GCCCCTG
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGC--ACCTTGGTG-CTC-G
** ** * ** ** * *** * * *
63732403 TTTGTGCGGGAGTGTCGGGCTAAAAAAAGTGTCCCCGTTTCAGACACATGAATGT-C----GCCT
62 GATGTGCGGGAGCCTCGAGC--ACCATCG-G-CACC-TTGGTGGCTC--GGATGTGCGGGAGCCT
*
63732463 CGTAGC-GC
120 CG-AGCACC
* * ** ** ** * ** * * ** ** **
63732471 ATTGACCAAGTTTTTTTAGCTC-TTTAG-GGGGGAAGTGATATTGAGCAAGCAGGGGTTGTCCAG
1 ATCG-GC-A-CCTTGGT-GCTCGGAT-GTGCGGG-A--G-CCTCGAGC-ACCATCGG--CACCTT
* * * * * * ** * * * *
63732534 GGCACTGCTC--ATTCTCCGGGGATCCATCACAGCA-TATAGAAAAC--GAT-GCAGCGAGTTGT
54 GG---TGCTCGGA-TGTGC-GGGAGCC-TC-GAGCACCATCGGCACCTTGGTGGC-TCG-GATGT
* *** *
63732593 CCCGGTCCCTCCCCTTACAGAACAAGAGCC
110 -GCGG----GAGCC-T-C-GAGC---A-CC
* * * * * *
63732623 -TCCAGCACCTTGG-GCCCTTGG-TCATGCCGGAGCACAT-G-GCAGCATCGGCACCTTGGTGGG
1 AT-CGGCACCTTGGTG--CTCGGAT-GTGCGGGAGC-C-TCGAGCACCATCGGCACCTTGGT-GC
* * * *
63732683 TCAGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAC
59 TCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
63732747 CACC
124 CACC
* * ** * *
63732751 ATCGGCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAGTATTGGCACCTTGGTGCTTGGAT
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
** * * *
63732816 GTGCGGGAGCCTCGAGCAGAACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAAC-CGC
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-C
* * * *
63732879 ATCGGCACCTTGGTGCTGGGATGTGCGGGAACCCCGAGC-CGCATCGGCACCTTTGTGGCTCGGA
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCTCGGA
* * * * *
63732943 TGTGCGGGAGACTCGAGCAGCATCGGCACCTTGGT-GCTTGAATGTGCGGGAGACTCGAGCACC
64 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63733006 ATCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCAAGC-CGCATCGGCACCTTGGTGTTGGGA
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGCTCGGA
* * * *
63733070 TGTGCGGGAGCCCCGAGC-CGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCAAGCAGC
64 TGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63733134 ATCGGTACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCATCGGTACCTTGGTGGCTCGGAT
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGAT
* * * * * *
63733199 GTGCGGGAGCCCCGAGGAGCATCGGCACCTTGGT-GCTGGGATGTCCAGGAGCCTCGAGC-CTC
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-C
* * * * *
63733261 ATCGGTACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCACCATCGACACCTTGGTGGCTCGGAT
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGAT
* ** * * * *
63733326 ATGCGGGAGCCTCGAGCTGCATCGACACCTTGGT-GCTGGGATGTGCGGGAGCCTCGACCAGC
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
63733388 ATCAGG-ACCTTGGTGGCTCGGATGTACGGGAGCCTCGACCAGCATCGGCACCTTGGGGGCTGGG
1 ATC-GGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTT-GGTGCTCGG
** ** *
63733452 ATGTGCGGGAGCCTCG-GACACCATCGGCAACCTTACT-GCTTAGATGTGCGGGAGCCTCGACCA
63 ATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCA
63733515 CC
126 CC
63733517 ATCGGCACCTTGG
1 ATCGGCACCTTGG
63733530 GGCCTAGTAT
Statistics
Matches: 1300, Mismatches: 294, Indels: 202
0.72 0.16 0.11
Matches are distributed among these distances:
124 59 0.05
125 41 0.03
126 11 0.01
127 661 0.51
128 306 0.24
129 60 0.05
130 3 0.00
131 13 0.01
132 11 0.01
133 4 0.00
134 10 0.01
135 12 0.01
136 6 0.00
137 2 0.00
138 3 0.00
139 11 0.01
140 15 0.01
141 16 0.01
142 12 0.01
143 9 0.01
144 3 0.00
145 8 0.01
146 3 0.00
147 6 0.00
148 2 0.00
149 6 0.00
150 4 0.00
151 2 0.00
152 1 0.00
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.20
Consensus pattern (127 bp):
ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATG
TGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
Found at i:63732951 original size:170 final size:170
Alignment explanation
Indices: 63732665--63733546 Score: 1105
Period size: 170 Copynumber: 5.2 Consensus size: 170
63732655 CACATGGCAG
* * * * *
63732665 CATCGGCACCTTGGTGGGTCAGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGCTGGGA
* * *
63732730 TGTGCGGGAGCCTCGA-CCACCATCGGCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAGT
66 TGTGCGGGAGCCTCGAGCC-GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGC
* *
63732794 ATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAG
130 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* * *
63732835 AACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAACCGCATCGGCACCTTGGTGCTGGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGCTGGGA
* * *
63732900 TGTGCGGGAACCCCGAGCCGCATCGGCACCTTTGTGGCTCGGATGTGCGGGAGACTCGAGCAGCA
66 TGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCA
* *
63732965 TCGGCACCTTGGTGCTTGAATGTGCGGGAGACTCGAGCAC
131 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* *
63733005 CATCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGTTGGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGCTGGGA
* *
63733070 TGTGCGGGAGCCCCGAGCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCAAGCAGCA
66 TGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCA
* *
63733135 TCGGTACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCAC
131 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* * * **
63733175 CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCCCGAGGAGCATCGGCACCTTGGTGCTGGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGCTGGGA
* * * * * * * * *
63733240 TGTCCAGGAGCCTCGAGCCTCATCGGTACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCACCA
66 TGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCA
* * * **
63733304 TCGACACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCTG
131 TCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAC
* * * *
63733345 CATCGACACCTTGGT-GCTGGGATGTGCGGGAGCCTCGA-CCAGCATCAGG-ACCTTGGTGGCTC
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAGCC-GCATC-GGCACCTTGGT-GCTG
* * * *
63733407 GGATGTACGGGAGCCTCGA-CCAGCATCGGCACCTTGGGGGCTGGGATGTGCGGGAGCCTCG-GA
63 GGATGTGCGGGAGCCTCGAGCC-GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAG-
* ** * *
63733470 CACCATCGGCAACCTTACTGCTTAGATGTGCGGGAGCCTCGACCAC
126 CAGCATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
* *
63733516 CATCGGCACCTTGG-GGCCTAGTATGTGCGGG
1 CATCGGCACCTTGGTGG-CTCGGATGTGCGGG
63733547 CTAAAGGAAA
Statistics
Matches: 620, Mismatches: 81, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
169 70 0.11
170 466 0.75
171 66 0.11
172 18 0.03
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (170 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAAGCCGCATCGGCACCTTGGTGCTGGGA
TGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCA
TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
Found at i:63733115 original size:255 final size:253
Alignment explanation
Indices: 63732664--63733546 Score: 1066
Period size: 255 Copynumber: 3.5 Consensus size: 253
63732654 GCACATGGCA
* * *
63732664 GCATCGGCACCTTGGTGGGTCAGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGA
* * * *
63732729 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAGT
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGC
* * *
63732794 ATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCGGCACCTTGGTGGCTCGGAT
131 ATCGGCACCTTGGTG-TTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGAT
* * *
63732859 GTGCGGGAGCCTCAAACCGCATCGGCACCTTGGTGCTGGGATGTGCGGGAACCCCGAGCC
195 GTGCGGGAGCCTCAAACCGCATCGG-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCC
* *
63732919 GCATCGGCACCTTTGTGGCTCGGATGTGCGGGAGACTCGAGCAGCATCGGCACCTTGGTGCTTGA
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGA
* * * *
63732984 ATGTGCGGGAGACTCGAGCACCATCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCAAGCCGC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGC
* *
63733049 ATCGGCACCTTGGTGTTGGGATGTGCGGGAGCCCCGAGCCGCATCGGCACCTTGGTGGCTCGGAT
131 ATCGGCACCTTGGTGTT-GGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGAT
* * * * *
63733114 GTGCGGGAGACTCAAGCAGCATCGGTACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCAC
195 GTGCGGGAGCCTCAAACCGCATCGG-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC-C
* * * * *
63733175 -CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCCCGAGGAGCATCGGCACCTTGGTGCTGGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGA
* * * * * * *
63733239 ATGTCCAGGAGCCTCGAGCC-TCATCGGTACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCAC
66 ATGTGCGGGAGCCTCGA-CCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-C
* * * * * *
63733302 -CATCGACACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCTGCATCGACACCTTGGT-GCTGG
129 GCATCGGCACCTTGGT-G-TTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCG
* *
63733365 GATGTGCGGGAGCCTC-GACCAGCATCAGGACCTTGGTGGCTCGGATGTACGGGAGCCTCGA-CC
192 GATGTGCGGGAGCCTCAAACC-GCATC-GGACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCC
* * * **
63733428 AGCATCGGCACCTTGGGGGCTGGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCTTACTGCT
1 -GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CAGCATCGGC-ACCTTGGTGCT
* *
63733492 T-AGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGG-GGCCTAGTATGTGCGGG
63 TGA-ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGG-CTCGGATGTGCGGG
63733547 CTAAAGGAAA
Statistics
Matches: 536, Mismatches: 75, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
253 2 0.00
254 71 0.13
255 411 0.77
256 41 0.08
257 11 0.02
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (253 bp):
GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGA
ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGC
ATCGGCACCTTGGTGTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATG
TGCGGGAGCCTCAAACCGCATCGGACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCC
Found at i:63738163 original size:48 final size:48
Alignment explanation
Indices: 63738092--63738186 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
63738082 TTCTTTGCTC
* **
63738092 AAAAACGCCTAAGTCAGCCTAACTTGCAGTAATAAAGGATTCAACAGT
1 AAAAACGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAGT
*
63738140 AAAAACGCCTAAGTCAGCTTAACTCGCAACAATAAAGGATTCAACAG
1 AAAAACGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAG
63738187 AATTCCCTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (48 bp):
AAAAACGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAGT
Found at i:63738523 original size:35 final size:36
Alignment explanation
Indices: 63738484--63738555 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
63738474 TCTAGGATCA
*
63738484 CATATC-TCAAAAGGTCACCTTCCATATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
* *
63738519 CATATCTTCAAAAGATCACTTTCCTTATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
63738555 C
1 C
63738556 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 6 0.18
36 27 0.82
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.32
Consensus pattern (36 bp):
CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
Found at i:63743625 original size:35 final size:36
Alignment explanation
Indices: 63743585--63743656 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 36
63743575 TCTAGGATCA
63743585 CATATC-TCAAAAGATCACCTTT-CATATTTGCCAAG
1 CATATCTTCAAAAGATCA-CTTTCCATATTTGCCAAG
*
63743620 CATATCTTCAAAAGATCACTTTCCTTATTTGCCAAG
1 CATATCTTCAAAAGATCACTTTCCATATTTGCCAAG
63743656 C
1 C
63743657 TCCGGAGATG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 10 0.29
36 24 0.71
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.33
Consensus pattern (36 bp):
CATATCTTCAAAAGATCACTTTCCATATTTGCCAAG
Found at i:63746707 original size:42 final size:43
Alignment explanation
Indices: 63746590--63746714 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
63746580 CTCCCCACAG
* * * *
63746590 TCGGCACCTTGGTGGTTCGGATGCGCGGGAGCCTCGCGTAGCA
1 TCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
* * *
63746633 CCGGCACCTTGGTGGCTGGGATGCGCCGGAGCCCCGAGCAGCA
1 TCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
* * *
63746676 TCGGCACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAGCA
1 TCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCA
63746715 CCGTCCACAC
Statistics
Matches: 69, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 21 0.30
43 48 0.70
ACGTcount: A:0.14, C:0.30, G:0.39, T:0.16
Consensus pattern (43 bp):
TCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
Found at i:63747305 original size:42 final size:42
Alignment explanation
Indices: 63747231--63747398 Score: 230
Period size: 42 Copynumber: 4.0 Consensus size: 42
63747221 AAGAGCCTCA
* * *
63747231 GGCACCTTGGTGGCGCAGATATGCGGGAGCCTCGAGCACCATC
1 GGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATC
63747274 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCCACCATC
1 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATC
* *
63747316 GGCAACCTTGGTGCTCGGATGTGCGGGAGCCTCTATCACCATC
1 GGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATC
* * *
63747359 GACACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
63747399 AAGCTGAAGT
Statistics
Matches: 112, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
41 1 0.01
42 62 0.55
43 49 0.44
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.19
Consensus pattern (42 bp):
GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATC
Found at i:63747398 original size:85 final size:86
Alignment explanation
Indices: 63747234--63747391 Score: 237
Period size: 85 Copynumber: 1.8 Consensus size: 86
63747224 AGCCTCAGGC
* *
63747234 ACCTTGGTGGCGCAGATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCGG
1 ACCTTGGTGGCGCAGATATGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTAGGATGTGCGG
*
63747299 GAGCCTCGGCCACCATCGGCA
66 AAGCCTCGGCCACCATCGGCA
* * * * *
63747320 ACCTTGGT-GCTCGGATGTGCGGGAGCCTCTATCACCATCGACACCTTGGTGCTAGGATGTGCGG
1 ACCTTGGTGGCGCAGATATGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTAGGATGTGCGG
63747384 AAGCCTCG
66 AAGCCTCG
63747392 AGCACCAAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 56 0.88
86 8 0.12
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (86 bp):
ACCTTGGTGGCGCAGATATGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTAGGATGTGCGG
AAGCCTCGGCCACCATCGGCA
Found at i:63747645 original size:24 final size:24
Alignment explanation
Indices: 63747611--63747688 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
63747601 CCGGTTAGGT
* *
63747611 TCCCGGTGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGATGATCCA
*
63747635 TCCCGGCGGTGCT-CTAGTGATCCA
1 TCCCGGCGGTGCTCCGA-TGATCCA
* *
63747659 T-CCGACGGTGCTCCGGTGATCCA
1 TCCCGGCGGTGCTCCGATGATCCA
63747682 TCCCGGC
1 TCCCGGC
63747689 ATATAGAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
23 20 0.45
24 24 0.55
ACGTcount: A:0.12, C:0.37, G:0.29, T:0.22
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGATGATCCA
Found at i:63747671 original size:23 final size:23
Alignment explanation
Indices: 63747629--63747684 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
63747619 GTGCTCCGAC
* *
63747629 GATCCATCCCGGCGGTGCTCTAGT
1 GATCCAT-CCGACGGTGCTCCAGT
*
63747653 GATCCATCCGACGGTGCTCCGGT
1 GATCCATCCGACGGTGCTCCAGT
63747676 GATCCATCC
1 GATCCATCC
63747685 CGGCATATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 22 0.76
24 7 0.24
ACGTcount: A:0.14, C:0.36, G:0.27, T:0.23
Consensus pattern (23 bp):
GATCCATCCGACGGTGCTCCAGT
Found at i:63747854 original size:42 final size:42
Alignment explanation
Indices: 63747788--63748457 Score: 876
Period size: 42 Copynumber: 16.0 Consensus size: 42
63747778 ACATGGCAGT
* * *
63747788 ATCGTCACCTTGGTGGCTCGGATGTACAGGAGCCTCGAGCACC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63747831 ATCGGCACCTTGGTGCTCGGATGTGCGAGTGCCTCGACCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* **
63747873 ATCGGCACCTTGGAGCTTTGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
63747915 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63747958 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
*
63748000 ATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63748043 ATCGGCACCTTGGTGCTTGGATGTG-GGAGAGCCTCGTGCCCC
1 ATCGGCACCTTGGTGCTCGGATGTGCGG-GAGCCTCGAGCACC
63748085 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * **
63748127 ATCGTCACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCAGA
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63748169 ACCGTCACCTTGGTGGCTCAGATGTGCGAGAGCCTCGAGCACC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63748212 ATCGGCACCTTGGTCCTGGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
*
63748254 ATCGGCA-CTTGGTG--C-----TG-GGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63748287 ATCGGCACCTTAGTGCCTCGGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACC
*
63748330 ATCGGCACCTTGGTGCTCAGATGTGCGGGAGCCTCG-GCTACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC-ACC
*
63748372 ATCGGCAACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACC
1 ATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63748415 ATCGACAACTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
63748457 A
1 A
63748458 AAGCTAATGT
Statistics
Matches: 552, Mismatches: 57, Indels: 37
0.85 0.09 0.06
Matches are distributed among these distances:
33 22 0.04
34 8 0.01
37 1 0.00
41 10 0.02
42 313 0.57
43 196 0.36
44 2 0.00
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.20
Consensus pattern (42 bp):
ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
Found at i:63747958 original size:85 final size:84
Alignment explanation
Indices: 63747788--63748457 Score: 876
Period size: 85 Copynumber: 8.0 Consensus size: 84
63747778 ACATGGCAGT
* * * *
63747788 ATCGTCACCTTGGTGGCTCGGATGTACAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
1 ATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
* * *
63747853 GTGCGAGTGCCTCGACCACC
65 GTGCGGGAGCCTCGAGCACC
* *
63747873 ATCGGCACCTTGGAGCTTTGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGAT
63747938 GTGCGGGAGCCTCGAGCACC
65 GTGCGGGAGCCTCGAGCACC
* *
63747958 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CTCGGAT
*
63748023 GTGCGGGAGCCTCGAGCAGC
65 GTGCGGGAGCCTCGAGCACC
* *
63748043 ATCGGCACCTTGGTGCTTGGATGTG-GGAGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGG-GAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
63748107 GTGCGGGAGCCTCGAGCACC
65 GTGCGGGAGCCTCGAGCACC
* * ** * * *
63748127 ATCGTCACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCAGAACCGTCACCTTGGTGGCTCAGAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGAT
*
63748192 GTGCGAGAGCCTCGAGCACC
65 GTGCGGGAGCCTCGAGCACC
* *
63748212 ATCGGCACCTTGGTCCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCA-CTTGGTG--C-----
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATG
*
63748269 TG-GGGAGCCTCGAGCAGC
66 TGCGGGAGCCTCGAGCACC
* * * *
63748287 ATCGGCACCTTAGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCAGAT
1 ATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
63748352 GTGCGGGAGCCTCG-GCTACC
65 GTGCGGGAGCCTCGAGC-ACC
* * * * *
63748372 ATCGGCAACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCGACAACTTGGTGCTAGGAT
1 ATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
*
63748437 GTGCGGAAGCCTCGAGCACC
65 GTGCGGGAGCCTCGAGCACC
63748457 A
1 A
63748458 AAGCTAATGT
Statistics
Matches: 516, Mismatches: 51, Indels: 36
0.86 0.08 0.06
Matches are distributed among these distances:
75 27 0.05
76 34 0.07
77 7 0.01
79 1 0.00
81 1 0.00
83 1 0.00
84 123 0.24
85 312 0.60
86 10 0.02
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.20
Consensus pattern (84 bp):
ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATG
TGCGGGAGCCTCGAGCACC
Found at i:63748065 original size:127 final size:127
Alignment explanation
Indices: 63747783--63748457 Score: 899
Period size: 127 Copynumber: 5.4 Consensus size: 127
63747773 AGAGTACATG
* * * *
63747783 GCAGTATCGTCACCTTGGTGGCTCGGATGTACAGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * * * **
63747848 CGGATGTGCGAGTGCCTCGACCACCATCGGCACCTTGGAGCTTTGATGTGCGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
63747910 GCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
63747975 GGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGA
* * *
63748038 GCAGCATCGGCACCTTGGT-GCTTGGATGTG-GGAGAGCCTCGTGCCCCATCGGCACCTTGGTGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGG-GAGCCTCGAGCACCATCGGCACCTTGGTGC
* * *
63748101 TCGGATGTGCGGGAGCCTCGAGCACCATCGTCACCTTGGTGCTTGGATGTGTGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * * *
63748164 GCAGAACCGTCACCTTGGTGGCTCAGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTCCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
63748229 GGGATGTGCGGGAGCCTCGAGCACCATCGGCA-CTTGGTG--C-----TG-GGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
63748282 GCAGCATCGGCACCTTAGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
63748347 CAGATGTGCGGGAGCCTCG-GCTACCATCGGCAACCTTGGTGCTCGGATGTGCAGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGAGC-ACCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
63748410 GCACCATCGACAACTTGGT-GCTAGGATGTGCGGAAGCCTCGAGCACCA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCA
63748458 AAGCTAATGT
Statistics
Matches: 479, Mismatches: 54, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
117 2 0.00
118 93 0.19
119 3 0.01
120 7 0.01
122 1 0.00
126 45 0.09
127 264 0.55
128 64 0.13
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (127 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
CGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
Found at i:63748550 original size:14 final size:14
Alignment explanation
Indices: 63748531--63748557 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63748521 ACACATGAAT
63748531 GTCGCCTGGTAGCA
1 GTCGCCTGGTAGCA
63748545 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
63748558 GCGTTTCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.30, G:0.37, T:0.22
Consensus pattern (14 bp):
GTCGCCTGGTAGCA
Found at i:63759819 original size:21 final size:22
Alignment explanation
Indices: 63759777--63759817 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
63759767 TTTCTCATGT
*
63759777 TGTTATTTATCTTTTCGATTTG
1 TGTTATTTATCTTTACGATTTG
63759799 TGTTA-TTATC-TTACGATTT
1 TGTTATTTATCTTTACGATTT
63759818 TGGTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 5 0.28
22 5 0.28
ACGTcount: A:0.17, C:0.10, G:0.12, T:0.61
Consensus pattern (22 bp):
TGTTATTTATCTTTACGATTTG
Found at i:63764558 original size:25 final size:24
Alignment explanation
Indices: 63764515--63764562 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
63764505 TTTCGTTTCG
**
63764515 TTTGTTTTCTGGGTTTTGTGGGGT
1 TTTGTTTTCTGGGAGTTGTGGGGT
63764539 TTTGTTTTTCTGGGAGTTGTGGGG
1 TTTG-TTTTCTGGGAGTTGTGGGG
63764563 GGTCTTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.02, C:0.04, G:0.40, T:0.54
Consensus pattern (24 bp):
TTTGTTTTCTGGGAGTTGTGGGGT
Found at i:63765184 original size:21 final size:21
Alignment explanation
Indices: 63765158--63765202 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
63765148 ATATAGACTC
63765158 CAAGGTTAGACTGGATGACAA
1 CAAGGTTAGACTGGATGACAA
63765179 CAAGGTTAGACTGGATGACAA
1 CAAGGTTAGACTGGATGACAA
63765200 CAA
1 CAA
63765203 AACCATTCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.16, G:0.27, T:0.18
Consensus pattern (21 bp):
CAAGGTTAGACTGGATGACAA
Found at i:63774713 original size:48 final size:48
Alignment explanation
Indices: 63774642--63774736 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
63774632 TTTCTTTCTC
* **
63774642 AAAAATGCCTAAGTCAGCCTAACTTGCAGTAATAAAGGATTCAACAGT
1 AAAAATGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAGT
*
63774690 AAAAATGCCTAAGTCAGCTTAACTCGCAACAATAAAGGATTCAACAG
1 AAAAATGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAG
63774737 AATTCCCTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (48 bp):
AAAAATGCCTAAGTCAGCCTAACTCGCAACAATAAAGGATTCAACAGT
Found at i:63775074 original size:35 final size:36
Alignment explanation
Indices: 63775034--63775105 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
63775024 TCTAGGATCA
63775034 CATATC-TCAAAAGATCACCTTCCATATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
* *
63775069 CATATCTTCAAAAGATCACTTTCCTTATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
63775105 C
1 C
63775106 TCCGGAGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 6 0.18
36 28 0.82
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (36 bp):
CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
Found at i:63784162 original size:43 final size:42
Alignment explanation
Indices: 63784094--63784262 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
63784084 GCTCCCCACA
* * *
63784094 ACCGGCACTTTCGTGGCTCGAATGCGCAGGAGCCTCGCGCAGC
1 ACCGGCAC-TTGGTGGCTCGGATGCGCAGGAGCCTCGAGCAGC
* * * *
63784137 ACCGGTATCTTGGTGGTTCGGATGCGTC-GGAGCCCCGAGCAGT
1 ACCGGCA-CTTGGTGGCTCGGATGCG-CAGGAGCCTCGAGCAGC
* * * * *
63784180 ATCGGCACTTAGGAGG-TCGGATGTGCTGGAGCCTCGAGCACC
1 ACCGGCACTT-GGTGGCTCGGATGCGCAGGAGCCTCGAGCAGC
* *
63784222 ATCC-GCAACTTGGTGCCTCGGATGGGCAGGAGCCTCGAGCA
1 A-CCGGC-ACTTGGTGGCTCGGATGCGCAGGAGCCTCGAGCA
63784263 CCATCCGTAA
Statistics
Matches: 100, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 29 0.29
43 68 0.68
44 2 0.02
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.19
Consensus pattern (42 bp):
ACCGGCACTTGGTGGCTCGGATGCGCAGGAGCCTCGAGCAGC
Found at i:63784809 original size:42 final size:42
Alignment explanation
Indices: 63784738--63784903 Score: 226
Period size: 42 Copynumber: 3.9 Consensus size: 42
63784728 GAGCCTCAAG
* * *
63784738 CACCTTGGTGGCTCAGATATGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGA
63784781 CACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCCACCATCGA
1 CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGA
* *
63784823 CAACCTTGGTGCTCGGATGTGTGGGAGCCTCGACCACCATCGA
1 C-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGA
* * *
63784866 CACCTTGGTGCTAGGATGTGCGGAAGCCTTGAGCACCA
1 CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
63784904 AAGCTGAAGT
Statistics
Matches: 110, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
41 1 0.01
42 61 0.55
43 48 0.44
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGA
Found at i:63785147 original size:23 final size:23
Alignment explanation
Indices: 63785117--63785164 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
63785107 AGTTAGGTTC
*
63785117 CCGGTGGTGCTTCGGCGATCCAT
1 CCGGTGGTGCTCCGGCGATCCAT
*
63785140 CCGGTGGTGCTCCGGGGATCCAT
1 CCGGTGGTGCTCCGGCGATCCAT
63785163 CC
1 CC
63785165 CGGCATATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.08, C:0.33, G:0.35, T:0.23
Consensus pattern (23 bp):
CCGGTGGTGCTCCGGCGATCCAT
Found at i:63785299 original size:42 final size:42
Alignment explanation
Indices: 63785222--63785816 Score: 710
Period size: 42 Copynumber: 14.0 Consensus size: 42
63785212 ACATGGCAGT
* * *
63785222 ATCGGCACCTTGGTGGCTCGGATATGCGAGAGCCTCGACCACC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
** * * *
63785265 ATAAGCACCTTTGAGCTTC-GATGTGCGGGAGCCTCGACCACC
1 ATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCACC
* *
63785307 ATCGGCACATTGGTGGCTCGGATGTGCGAGAGCCTCGAGCACC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63785350 ATCGACACCTTGGTGCTGGGATGTGCAGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63785392 ATCGGCACCTTGGTTCCTCAGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
63785435 ATTGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
63785477 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * **
63785519 ATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAAA
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63785561 ACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACT
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63785604 ATCGGCACCTTGGTGCTGGGGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTGCT-CGGATGTGCGGGAGCCTCGAGCACC
* * * *
63785647 ATCGGCACCTTAGTGC-CTGGATGTGGGGGAGCCTCGTGCCCC
1 ATCGGCACCTTGGTGCTC-GGATGTGCGGGAGCCTCGAGCACC
*
63785689 ATCGACACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCTACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC-ACC
*
63785731 ATAGGCAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
** * * * *
63785774 ATCGATAACTTGGTGCTAGGATATGCGGAAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
63785816 A
1 A
63785817 AAGCTAAAGT
Statistics
Matches: 472, Mismatches: 69, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.00
42 272 0.58
43 196 0.42
44 2 0.00
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (42 bp):
ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
Found at i:63785373 original size:85 final size:85
Alignment explanation
Indices: 63785222--63785816 Score: 732
Period size: 85 Copynumber: 7.0 Consensus size: 85
63785212 ACATGGCAGT
* * * * * * *
63785222 ATCGGCACCTTGGTGGCTCGGATATGCGAGAGCCTCGACCACCAT-AAGCACCTTTGAGCTTCGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGA-CACCTTGGTGCTTGGA
*
63785286 TGTGCGGGAGCCTCGACCACC
65 TGTGCGGGAGCCTCGAGCACC
* * *
63785307 ATCGGCACATTGGTGGCTCGGATGTGCGAGAGCCTCGAGCACCATCGACACCTTGGTGCTGGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGAT
* *
63785372 GTGCAGGAGCCTCGAGCAGC
66 GTGCGGGAGCCTCGAGCACC
** * * * *
63785392 ATCGGCACCTTGGTTCCTCAGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGAT
* * *
63785457 GTGGGGGAGCCTCGTGCCCC
66 GTGCGGGAGCCTCGAGCACC
**
63785477 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGAT
**
63785541 GTGCGGGAGCCTCGAGCAAA
66 GTGCGGGAGCCTCGAGCACC
* * * *
63785561 ACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACTATCGGCACCTTGGTGCTGGGGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCT-TGGA
*
63785626 TGTGCGGGAGCCTCGAGCAGC
65 TGTGCGGGAGCCTCGAGCACC
* * * * * *
63785647 ATCGGCACCTTAGTGCCT-GGATGTGGGGGAGCCTCGTGCCCCATCGACACCTTGGTGCTCGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGAT
63785711 GTGCGGGAGCCTCG-GCTACC
66 GTGCGGGAGCCTCGAGC-ACC
* * * *
63785731 ATAGGCAACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGATAACTTGGTGCTAGGA
1 ATCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGA
* *
63785795 TATGCGGAAGCCTCGAGCACC
65 TGTGCGGGAGCCTCGAGCACC
63785816 A
1 A
63785817 AAGCTAAAGT
Statistics
Matches: 441, Mismatches: 62, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
83 2 0.00
84 100 0.23
85 299 0.68
86 40 0.09
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (85 bp):
ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGAT
GTGCGGGAGCCTCGAGCACC
Found at i:63785814 original size:212 final size:208
Alignment explanation
Indices: 63785284--63785814 Score: 749
Period size: 212 Copynumber: 2.5 Consensus size: 208
63785274 TTTGAGCTTC
* * *
63785284 GATGTGCGGGAGCCTCGACCACCATCGGCACATTGGTGGCTCGGATGTGCGAGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
*
63785349 CATCGACACCTTGGTGCTGGGATGTGCAGGAGCCTCGAGCAGCATCGGCACCTTGGTTCCTCAGA
64 CATCGACACCTTGGTGCTAGGATGTGC-GGAGCCTCGAGCA-CATCGGCACCTTGGTTCCTCAGA
* * *
63785414 TGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCAT
127 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTGGATGTGGGGGAGCCTCGTGCCCCAT
*
63785479 CGGCACCTTGGTGCTCG
192 CGACACCTTGGTGCTCG
* * **
63785496 GATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAAA
1 GATGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * **
63785561 ACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACTATCGGCACCTTGG-TGCTGGGG
65 ATCGACACCTTGGT-GCTAGGATGTGC-GGAGCCTCGAGCAC-ATCGGCACCTTGGTTCCT-CAG
63785625 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTGGATGTGGGGGAGCCTCGTGCCCCA
126 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTGGATGTGGGGGAGCCTCGTGCCCCA
63785690 TCGACACCTTGGTGCTCG
191 TCGACACCTTGGTGCTCG
*
63785708 GATGTGCGGGAGCCTCGGCTACCATAGGCAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCGGC-ACCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
63785773 CATCGATAACTTGGTGCTAGGATATGCGGAAGCCTCGAGCAC
64 CATCGACACCTTGGTGCTAGGATGTGCGG-AGCCTCGAGCAC
63785815 CAAAGCTAAA
Statistics
Matches: 284, Mismatches: 29, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
211 44 0.15
212 197 0.69
213 43 0.15
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.20
Consensus pattern (208 bp):
GATGTGCGGGAGCCTCGGCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
TCGACACCTTGGTGCTAGGATGTGCGGAGCCTCGAGCACATCGGCACCTTGGTTCCTCAGATGTG
CGGGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTGGATGTGGGGGAGCCTCGTGCCCCATCGAC
ACCTTGGTGCTCG
Found at i:63785908 original size:13 final size:13
Alignment explanation
Indices: 63785890--63785915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63785880 ACACATGAAT
63785890 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
63785903 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
63785916 CTGGTAGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (13 bp):
GTCGCCTGGTAGC
Found at i:63786102 original size:21 final size:22
Alignment explanation
Indices: 63786060--63786100 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
63786050 TTTCTCATGT
*
63786060 TGTTATTTATCTTTTCGATTTG
1 TGTTATTTATCTTTACGATTTG
63786082 TGTTA-TTATC-TTACGATTT
1 TGTTATTTATCTTTACGATTT
63786101 TGGTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 5 0.28
22 5 0.28
ACGTcount: A:0.17, C:0.10, G:0.12, T:0.61
Consensus pattern (22 bp):
TGTTATTTATCTTTACGATTTG
Found at i:63791221 original size:24 final size:23
Alignment explanation
Indices: 63791193--63791240 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
63791183 GGTTCCTGGC
* *
63791193 GGTGCTCTGGCGATCCATCTCGGT
1 GGTGCTCCGACGATCCATC-CGGT
63791217 GGTGCTCCGACGATCCATCCGGT
1 GGTGCTCCGACGATCCATCCGGT
63791240 G
1 G
63791241 ACGCTCCGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.10, C:0.31, G:0.33, T:0.25
Consensus pattern (23 bp):
GGTGCTCCGACGATCCATCCGGT
Found at i:63791246 original size:23 final size:24
Alignment explanation
Indices: 63791203--63791248 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
63791193 GGTGCTCTGG
**
63791203 CGATCCATCTCGGTGGTGCTCCGA
1 CGATCCATCTCGGTGACGCTCCGA
63791227 CGATCCATC-CGGTGACGCTCCG
1 CGATCCATCTCGGTGACGCTCCG
63791249 GTGATTTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.13, C:0.37, G:0.28, T:0.22
Consensus pattern (24 bp):
CGATCCATCTCGGTGACGCTCCGA
Found at i:63791400 original size:43 final size:42
Alignment explanation
Indices: 63791311--63791762 Score: 514
Period size: 43 Copynumber: 10.6 Consensus size: 42
63791301 CCCCTTGAGA
* *
63791311 CTCGAGCAGAATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGC
* * * *
63791353 CTCGAGCAGAACCGACACCTTGGTGGCTCGGATGTGCGGGACC
1 CTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGC
* * * *
63791396 CTCGAGCCGCATCGGCACCTTAGTGGCTCGGATGTGCGAGAGA
1 CTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGC
* *
63791439 GTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGC
* * * * *
63791481 CTCGAGCACCATC-TCTACCTTGGTGGCTCGGATGTACAGCAGC
1 CTCGAGCAGCATCGGC-ACCTTGGT-GCTCGGATGTGCGGGAGC
* * * * *
63791524 CCCGAGGAGCATCGGCACCTTGGTGCTGGGATTTGTGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGC
* * * *
63791566 CTCGAGCACCGTCGGCAGCTTGGTGCT-GGCATGTGCGGGAGA
1 CTCGAGCAGCATCGGCACCTTGGTGCTCGG-ATGTGCGGGAGC
* * *
63791608 CTCGATCAGCATCGTCACCTTGGTGGGTCGGATGTGCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGC
* * *
63791651 GTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGC
*
63791693 CTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTCCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGC
63791736 CTCGAGCA-CTATCGGCACCTTGGTGCT
1 CTCGAGCAGC-ATCGGCACCTTGGTGCT
63791763 TGGGTGGGGG
Statistics
Matches: 341, Mismatches: 60, Indels: 18
0.81 0.14 0.04
Matches are distributed among these distances:
41 3 0.01
42 160 0.47
43 175 0.51
44 3 0.01
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (42 bp):
CTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGC
Found at i:63791689 original size:212 final size:213
Alignment explanation
Indices: 63791321--63791762 Score: 595
Period size: 212 Copynumber: 2.1 Consensus size: 213
63791311 CTCGAGCAGA
* *
63791321 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCGACACCTTGGTGGCTCGGAT
1 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACAACCGACACCTTGGTGGCTCGGAT
* * *
63791386 GTGCGGGACCCTCGAGCCGCATCGGCACCTTAGTGGCTCGGATGTGCGAGAGAGTCGAGCAGCAT
66 GTGCGGGACACTCGAGCAGCATCGGCACCTTAGTGGCTCGGATGTGCGAGAGAGTCGAGCACCAT
*
63791451 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATC-TCTACCTTGGTGGCTCGGATG
131 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGGCTCGGATG
*
63791515 TACAGCAGCCCCGAGGAGC-
195 TACAGCAGCCCCGAGCA-CT
* * *** * *
63791534 ATCGGCACCTTGGTGCTGGGATTTGTGGGAGCCTCGAGCACCGTCGGCAGCTTGGT-GCT-GGCA
1 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACAACCGACACCTTGGTGGCTCGG-A
* * * * * * *
63791597 TGTGCGGGAGACTCGATCAGCATCGTCACCTTGGTGGGTCGGATGTGCGGGAGCGTCGAGCACCA
65 TGTGCGGGACACTCGAGCAGCATCGGCACCTTAGTGGCTCGGATGTGCGAGAGAGTCGAGCACCA
*
63791662 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATG
130 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATG
* * * *
63791727 TCCGGGAGCCTCGAGCACT
195 TACAGCAGCCCCGAGCACT
63791746 ATCGGCACCTTGGTGCT
1 ATCGGCACCTTGGTGCT
63791763 TGGGTGGGGG
Statistics
Matches: 200, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
211 3 0.01
212 149 0.75
213 48 0.24
ACGTcount: A:0.15, C:0.27, G:0.36, T:0.21
Consensus pattern (213 bp):
ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACAACCGACACCTTGGTGGCTCGGAT
GTGCGGGACACTCGAGCAGCATCGGCACCTTAGTGGCTCGGATGTGCGAGAGAGTCGAGCACCAT
CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGT
ACAGCAGCCCCGAGCACT
Found at i:63791763 original size:85 final size:85
Alignment explanation
Indices: 63791311--63791788 Score: 552
Period size: 85 Copynumber: 5.6 Consensus size: 85
63791301 CCCCTTGAGA
** * * *
63791311 CTCGAGCAGAATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCGACACCTTGG
1 CTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG
*
63791376 TGGCTCGGATGTGCGGGACC
66 TGGCTCGGATGTGCGGGAGC
* * * **
63791396 CTCGAGC-CGCATCGGCACCTTAGTGGCTCGGATGTGCGAGAGAGTCGAGCAGCATCGGCACCTT
1 CTCGAGCAC-CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT
*
63791460 GGT-GCTTGGATGTGCGGGAGC
64 GGTGGCTCGGATGTGCGGGAGC
* * * * * * *
63791481 CTCGAGCACCATC-TCTACCTTGGTGGCTCGGATGTACAGCAGCCCCGAGGAGCATCGGCACCTT
1 CTCGAGCACCATCGGC-ACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT
* * *
63791545 GGT-GCTGGGATTTGTGGGAGC
64 GGTGGCTCGGATGTGCGGGAGC
* * * * *
63791566 CTCGAGCACCGTCGGCAGCTTGGTGC-TGGCATGTGCGGGAGACTCGATCAGCATCGTCACCTTG
1 CTCGAGCACCATCGGCACCTTGGTGCTTGG-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTG
*
63791630 GTGGGTCGGATGTGCGGGAGC
65 GTGGCTCGGATGTGCGGGAGC
*
63791651 GTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG
1 CTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG
*
63791716 TGGCTCGGATGTCCGGGAGC
66 TGGCTCGGATGTGCGGGAGC
* * * * * *
63791736 CTCGAGCACTATCGGCACCTTGGTGCTTGGGTGGGGGGGGGCCTCGGGCAGCA
1 CTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCA
63791789 CCCGCACCNN
Statistics
Matches: 329, Mismatches: 56, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
83 2 0.01
84 31 0.09
85 256 0.78
86 40 0.12
ACGTcount: A:0.15, C:0.27, G:0.37, T:0.20
Consensus pattern (85 bp):
CTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG
TGGCTCGGATGTGCGGGAGC
Found at i:63791796 original size:42 final size:42
Alignment explanation
Indices: 63791311--63791788 Score: 503
Period size: 42 Copynumber: 11.3 Consensus size: 42
63791301 CCCCTTGAGA
*
63791311 CTCGAGCAGAATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
* * * * *
63791353 CTCGAGCAGAACCGACACCTTGGTGGCTCGGATGTGCGGGACC
1 CTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGC
* * * * *
63791396 CTCGAGCCGCATCGGCACCTTAGTGGCTCGGATGTGCGAGAGA
1 CTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGC
*
63791439 GTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
* * * * * *
63791481 CTCGAGCACCATC-TCTACCTTGGTGGCTCGGATGTACAGCAGC
1 CTCGAGCAGCATCGGC-ACCTTGGT-GCTTGGATGTGCGGGAGC
* * * * *
63791524 CCCGAGGAGCATCGGCACCTTGGTGCTGGGATTTGTGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
* * * *
63791566 CTCGAGCACCGTCGGCAGCTTGGTGC-TGGCATGTGCGGGAGA
1 CTCGAGCAGCATCGGCACCTTGGTGCTTGG-ATGTGCGGGAGC
* * * *
63791608 CTCGATCAGCATCGTCACCTTGGTGGGTCGGATGTGCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGC
* *
63791651 GTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
* *
63791693 CTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTCCGGGAGC
1 CTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGC
* * * *
63791736 CTCGAGCA-CTATCGGCACCTTGGTGCTTGGGTGGGGGGGGGC
1 CTCGAGCAGC-ATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
*
63791778 CTCGGGCAGCA
1 CTCGAGCAGCA
63791789 CCCGCACCNN
Statistics
Matches: 357, Mismatches: 69, Indels: 20
0.80 0.15 0.04
Matches are distributed among these distances:
41 3 0.01
42 176 0.49
43 175 0.49
44 3 0.01
ACGTcount: A:0.15, C:0.27, G:0.37, T:0.20
Consensus pattern (42 bp):
CTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
Found at i:63792197 original size:85 final size:85
Alignment explanation
Indices: 63792045--63793122 Score: 1306
Period size: 85 Copynumber: 12.7 Consensus size: 85
63792035 NNNNNNNNCC
* * ** * * *
63792045 CCATCGGCACCTTGGTGGCACGGATATGCTTGAGACTCGAGCAGAATCGGCACCTTGGT-GCTTG
1 CCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCG
63792109 GATGTGCGGGAGCCTCGAGCA
65 GATGTGCGGGAGCCTCGAGCA
** * * * * * *
63792130 GAACCGACACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAACAGCATCGGTACCTTGGT-GCTGG
1 CCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCG
*
63792194 GATGTGTGGGAGCCTCGAGCA
65 GATGTGCGGGAGCCTCGAGCA
* * * * * *
63792215 CCATCGGCACCTTAGTGCTTGGATGTACGGGAGCCTCGACCACCATCGGCACCTTGGTGGCACGG
1 CCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGG
* ** *
63792280 ATATGCTTGAGACTCGAGCA
66 ATGTGCGGGAGCCTCGAGCA
** * * * *
63792300 GAATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCGACACCTTGGTGGCTCGG
1 CCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGG
*
63792365 ATATGCGGGAGCCTCGAGC-
66 ATGTGCGGGAGCCTCGAGCA
* * *
63792384 CGCATCGGCACCTTAGTGGCTCGGATGTG-GGAGAGACTCGAGTAGCATCGGCACCTTGGT-GCT
1 C-CATCGGCACCTTGGT-GCTCGGATGTGCGG-GAGCCTCGAGCAGCATCGGCACCTTGGTGGCT
*
63792447 TGGATGTGCGGGAGCCTCGAGCA
63 CGGATGTGCGGGAGCCTCGAGCA
* * * * * * *
63792470 CCATCGGCACCTTGGTGGCTCGGATGTACAGCAGCCCCGAGGAGCATCGGTACCTTGGT-GCTGG
1 CCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCG
* *
63792534 GATTTGTGGGAGCCTCGAGCA
65 GATGTGCGGGAGCCTCGAGCA
* * * *
63792555 CCGTCGGCAGCTTGGTGCT-GGCATGTGCGGGAGACTCGAGCAGCATCGTCACCTTGGTGGCTCG
1 CCATCGGCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCG
*
63792619 GATGTGCGGGAGCGTCGAGCA
65 GATGTGCGGGAGCCTCGAGCA
* * *
63792640 CCATCGGCACCTTGGTGCTTGGATGTGTGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGG
1 CCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGG
* *
63792705 ATGTCCGGGAGCCTCAAGCA
66 ATGTGCGGGAGCCTCGAGCA
* * * *
63792725 CTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCGGCACCTTGGTGGCTCGG
1 CCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGG
63792790 ATGTGCGGGAGCCTCGAGCA
66 ATGTGCGGGAGCCTCGAGCA
* * * *
63792810 CCATCGGCACCTTGGTGTTGGGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCCTCGG
1 CCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGG
*
63792875 ATGTGTGGGAGCCTCGAGCA
66 ATGTGCGGGAGCCTCGAGCA
* * * * * *
63792895 GCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTTGTGCACCATCGGCACCTTGGTGGCTCGG
1 CCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGG
*
63792960 ATGTGCGGGAGCCTCGAGCT
66 ATGTGCGGGAGCCTCGAGCA
* * * *
63792980 GCATTGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGG
1 CCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGG
* *
63793045 ATGTGCGGGAGCTTCGACCA
66 ATGTGCGGGAGCCTCGAGCA
* * *
63793065 GCATCGGCACCTTGGGGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG
1 CCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG
63793123 AGCCTTGGAT
Statistics
Matches: 851, Mismatches: 132, Indels: 19
0.85 0.13 0.02
Matches are distributed among these distances:
83 2 0.00
84 67 0.08
85 705 0.83
86 77 0.09
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (85 bp):
CCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGG
ATGTGCGGGAGCCTCGAGCA
Found at i:63792666 original size:340 final size:339
Alignment explanation
Indices: 63792046--63793139 Score: 1489
Period size: 340 Copynumber: 3.2 Consensus size: 339
63792036 NNNNNNNCCC
* * **
63792046 CATCGGCACCTTGGTGGCACGGATATGCTTGAGACTCGAGCAGAATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGAATCGGCACCTTGGTGCTTGGA
** * * * *
63792111 TGTGCGGGAGCCTCGAGCAGAACCGACACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAACAGCA
66 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
*
63792176 TCGGTACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTAGTGCTTGGATGT
131 TCGGTACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
* * * * ** *
63792241 ACGGGAGCCTCGACCACCATCGGCACCTTGGTGGCACGGATATGCTTGAGACTCGAGCAGAATCG
196 GCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG-CTCGAGCAGCATCG
* * * * *
63792306 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCGACACCTTGGTGGCTCGGATATGC
260 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGTGC
63792371 GGGAGCCTCGAGCCG
325 GGGAGCCTCGAGCCG
* * *
63792386 CATCGGCACCTTAGTGGCTCGGATGTG-GGAGAGACTCGAGTAGCATCGGCACCTTGGTGCTTGG
1 CATCGGCACCTTGGTGGCTCGGATGTGCGG-GAGACTCGAGCAGAATCGGCACCTTGGTGCTTGG
* * * * *
63792450 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTACAGCAGCCCCGAGGAGC
65 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGC
* * *
63792515 ATCGGTACCTTGGTGCTGGGATTTGTGGGAGCCTCGAGCACCGTCGGCAGCTTGGTGC-TGGCAT
130 ATCGGTACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG-AT
* * * *
63792579 GTGCGGGAGACTCGAGCAGCATCGTCACCTTGGTGGCTCGGATGTGCGGGAGCGTCGAGCACCAT
194 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGC-TCGAGCAGCAT
*
63792644 CGGCACCTTGGTGCTTGGATGTGTGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGT
258 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGT
* *
63792709 CCGGGAGCCTCAAGCAC-
323 GCGGGAGCCTCGAGC-CG
* * * * *
63792726 TATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGAACCGGCACCTTGGTGGCTCGG
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGAATCGGCACCTTGGT-GCTTGG
* *
63792790 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GTTGGGATGTGCGGGAGCCTCGAGCAGC
65 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGC
* *
63792854 ATCGGTACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
130 ATCGGTACCTTGGTG-CTGGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
* * * *
63792919 GTGGGGGAGCCTTGTGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCTGCAT
194 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG-CTCGAGCAGCAT
* *
63792984 TGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGT
258 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGT
*
63793049 GCGGGAGCTTCGA-CCAG
323 GCGGGAGCCTCGAGCC-G
* * ** *
63793066 CATCGGCACCTTGGGGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGAGCCTTGG
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGAATCGGCACCTTGGTG-CTTGG
*
63793131 ATGTACGGG
65 ATGTGCGGG
63793140 CTAAAGGAAA
Statistics
Matches: 657, Mismatches: 84, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
338 1 0.00
339 75 0.11
340 527 0.80
341 54 0.08
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (339 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGAATCGGCACCTTGGTGCTTGGA
TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
TCGGTACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGT
GCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCTCGAGCAGCATCGG
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGTGCG
GGAGCCTCGAGCCG
Found at i:63793719 original size:43 final size:43
Alignment explanation
Indices: 63793653--63793820 Score: 117
Period size: 43 Copynumber: 3.9 Consensus size: 43
63793643 CTCCCCACAG
* ** * *
63793653 CCGGCACATTGGTGGCTGGGATGCG-AGGAAGCCTCGCGCAGCA
1 CCGGCACCTTGGTGGCTCAGATGCGCAGG-AGCCCCGAGCAGCA
*
63793696 CCGGCACCTTGGTGGCTCAGATGCGCCGGAGCCCCGAGCAGCA
1 CCGGCACCTTGGTGGCTCAGATGCGCAGGAGCCCCGAGCAGCA
* * * * * * * * *
63793739 TCGGCACCTCGGAGG-TCGGATGTGCCGGAGTCTCGAGCACCA
1 CCGGCACCTTGGTGGCTCAGATGCGCAGGAGCCCCGAGCAGCA
* * * * *
63793781 TCC-ACACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGCA
1 -CCGGCACCTTGGTGGCTCAGATGCGCAGGAGCCCCGAGCA
63793821 CCATCCGCAA
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 30 0.30
43 69 0.68
44 2 0.02
ACGTcount: A:0.17, C:0.32, G:0.35, T:0.15
Consensus pattern (43 bp):
CCGGCACCTTGGTGGCTCAGATGCGCAGGAGCCCCGAGCAGCA
Found at i:63793789 original size:42 final size:43
Alignment explanation
Indices: 63793715--63793826 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
63793705 TGGTGGCTCA
* * * ** *
63793715 GATGCGCCGGAGCCCCGAGCAGCATCGGCACCTCGGAG-GTCG
1 GATGTGCCGGAGCCTCGAGCACCATCCACACCTCGGAGCCTCG
* * *
63793757 GATGTGCCGGAGTCTCGAGCACCATCCACACCTTGGTGCCTCG
1 GATGTGCCGGAGCCTCGAGCACCATCCACACCTCGGAGCCTCG
*
63793800 GATGTGCAGGAGCCTCGAGCACCATCC
1 GATGTGCCGGAGCCTCGAGCACCATCC
63793827 GCAACTTTAG
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 30 0.52
43 28 0.48
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (43 bp):
GATGTGCCGGAGCCTCGAGCACCATCCACACCTCGGAGCCTCG
Found at i:63793821 original size:43 final size:42
Alignment explanation
Indices: 63793700--63793826 Score: 137
Period size: 43 Copynumber: 3.0 Consensus size: 42
63793690 GCAGCACCGG
* * * * **
63793700 CACCTTGGTGGCTCAGATGCGCCGGAGCCCCGAGCAGCATCGG
1 CACCTTGGT-GCTCGGATGTGCCGGAGCCTCGAGCACCATCCA
* * * *
63793743 CACCTCGGAGGTCGGATGTGCCGGAGTCTCGAGCACCATCCA
1 CACCTTGGTGCTCGGATGTGCCGGAGCCTCGAGCACCATCCA
*
63793785 CACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGCACCATCC
1 CACCTTGGTG-CTCGGATGTGCCGGAGCCTCGAGCACCATCC
63793827 GCAACTTTAG
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 33 0.49
43 35 0.51
ACGTcount: A:0.17, C:0.35, G:0.31, T:0.17
Consensus pattern (42 bp):
CACCTTGGTGCTCGGATGTGCCGGAGCCTCGAGCACCATCCA
Found at i:63794360 original size:42 final size:42
Alignment explanation
Indices: 63794294--63794460 Score: 228
Period size: 42 Copynumber: 3.9 Consensus size: 42
63794284 AGAGCCTCAA
*
63794294 GCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
63794337 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCG
* * *
63794379 GCAACCTTAGTGCTCAGATGTGCGGGAGCCTCGACCACCATCG
1 GC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * * *
63794422 ACACCTTGGTGCTAGGATGTCCGGAAGCCTCGAGCACCA
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
63794461 AAGCTGAAGT
Statistics
Matches: 110, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.01
42 62 0.56
43 47 0.43
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:63794460 original size:85 final size:86
Alignment explanation
Indices: 63794296--63794453 Score: 237
Period size: 85 Copynumber: 1.8 Consensus size: 86
63794286 AGCCTCAAGC
* * * * * *
63794296 ACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCGG
1 ACCTTAGTGGCTCAGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCGG
*
63794361 GAGCCTCGGCCACCATCGGCA
66 AAGCCTCGGCCACCATCGGCA
*
63794382 ACCTTAGT-GCTCAGATGTGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCGG
1 ACCTTAGTGGCTCAGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCGG
63794446 AAGCCTCG
66 AAGCCTCG
63794454 AGCACCAAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 57 0.89
86 7 0.11
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (86 bp):
ACCTTAGTGGCTCAGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCGG
AAGCCTCGGCCACCATCGGCA
Found at i:63796254 original size:42 final size:43
Alignment explanation
Indices: 63796177--63796329 Score: 238
Period size: 43 Copynumber: 3.6 Consensus size: 43
63796167 CACATGGCAG
63796177 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
63796220 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGACCAC
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
63796262 CATCGTCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAC
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
*
63796305 CATCGGCACCTTGGT-GCTTGGATGT
1 CATCGGCACCTTGGTGGCTCGGATGT
63796330 ACCGNNNNNN
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
42 47 0.47
43 52 0.53
ACGTcount: A:0.15, C:0.29, G:0.34, T:0.22
Consensus pattern (43 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
Found at i:63797891 original size:42 final size:43
Alignment explanation
Indices: 63797769--63797940 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 43
63797759 TCCCCACAGC
* * * *
63797769 CGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTTGCGCAGCAC
1 CGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAT
*
63797812 CGGCACCTTGGTGGCTCGGATGCGCCGGAGCCCCGAGCAGCAT
1 CGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAT
* * * * *
63797855 CGGCACCTCGGAGG-TCGGATGTGCCGGAGTCTCGAGCACCAT
1 CGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAT
** * * * * *
63797897 CCACACCCTGG-GCCCTCGGATGTGCAGGAGCCTCGAGCACCAT
1 CGGCACCTTGGTG-GCTCGGATGCGCCGGAGCCTCGAGCAGCAT
63797940 C
1 C
63797941 CGCAACTTTA
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
41 1 0.01
42 31 0.28
43 77 0.71
ACGTcount: A:0.15, C:0.35, G:0.35, T:0.15
Consensus pattern (43 bp):
CGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAT
Found at i:63798476 original size:42 final size:42
Alignment explanation
Indices: 63798409--63798575 Score: 228
Period size: 42 Copynumber: 3.9 Consensus size: 42
63798399 AGAGCCTCAA
* *
63798409 GCACCTTGGTGGCTCGAATATGCGGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
63798452 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCG
* *
63798494 GCAACCTTGGTGCTCAGATGTGCGGGAGCCTCGACCACCATCG
1 GC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * * *
63798537 ACACCTTGGTGCTAGGATGTCCGGAAGCCTCGAGCACCA
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
63798576 AAGCTGAAGT
Statistics
Matches: 111, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
41 1 0.01
42 62 0.56
43 48 0.43
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:63798575 original size:85 final size:86
Alignment explanation
Indices: 63798411--63798568 Score: 239
Period size: 85 Copynumber: 1.8 Consensus size: 86
63798401 AGCCTCAAGC
* * * *
63798411 ACCTTGGTGGCTCGAATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGCGG
1 ACCTTGGTGGCTCGAATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCGG
*
63798476 GAGCCTCGGCCACCATCGGCA
66 AAGCCTCGGCCACCATCGGCA
*
63798497 ACCTTGGT-GCTC-AGATGTGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCG
1 ACCTTGGTGGCTCGA-ATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCG
63798560 GAAGCCTCG
65 GAAGCCTCG
63798569 AGCACCAAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
84 1 0.02
85 56 0.86
86 8 0.12
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (86 bp):
ACCTTGGTGGCTCGAATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTCCGG
AAGCCTCGGCCACCATCGGCA
Found at i:63803903 original size:24 final size:24
Alignment explanation
Indices: 63803871--63803921 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
63803861 CCGGTTAGGT
*
63803871 TCCCCGCGGTGCTCCGACAATCCA
1 TCCCAGCGGTGCTCCGACAATCCA
* *
63803895 TCCCAGCGGTGCTCCGGCGATCCA
1 TCCCAGCGGTGCTCCGACAATCCA
63803919 TCC
1 TCC
63803922 GGCGGCGTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.14, C:0.45, G:0.24, T:0.18
Consensus pattern (24 bp):
TCCCAGCGGTGCTCCGACAATCCA
Found at i:63804127 original size:42 final size:42
Alignment explanation
Indices: 63804048--63804726 Score: 822
Period size: 42 Copynumber: 16.0 Consensus size: 42
63804038 ACATGGCAAT
63804048 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63804091 ATCGGCACCTTGGTGCTCGGATGTGCGAGTGTCTCGACCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63804133 ATCGGCACCTTGGAGCTTC-GATGTGCGGGAGCCTCGACCACC
1 ATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCACC
* **
63804175 ATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTATAGCACC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63804218 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCAAGCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63804260 ATCGGTACCTTGGTACCTCGGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
63804303 ATCGGTACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63804345 ATCGGCACCTTAGTGGTCGGATGTACGGGAGCCTCGAGCACT
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* **
63804387 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGA
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63804429 ACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGATCACT
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63804472 ATCGGCACCTTGGTGCTAGGATGTACGGGAGACTCGAGCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
63804514 ATCGGCACCTTGGTGCCTCGGATGTCCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
63804557 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
63804599 ATCGGCACCTTGGTGCTCGAATGGGTGGGAGCCTC-AGCTACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC-ACC
* *
63804641 ATCGGCAACCTTGGTGCTCGGATGTGCGGGAGCCGCGATCACC
1 ATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
63804684 ATCGACAACTTGGTGCTAGGATGTGCGGAAGCGTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
63804726 A
1 A
63804727 AAGCTAAAGT
Statistics
Matches: 545, Mismatches: 82, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
41 2 0.00
42 342 0.63
43 199 0.37
44 2 0.00
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (42 bp):
ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
Found at i:63804218 original size:85 final size:85
Alignment explanation
Indices: 63804048--63804726 Score: 837
Period size: 85 Copynumber: 8.0 Consensus size: 85
63804038 ACATGGCAAT
*
63804048 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGA
1 ATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGA
* * * *
63804112 TGTGCGAGTGTCTCGACCACC
65 TGTGCGGGAGCCTCGAGCACC
* * * *
63804133 ATCGGCACCTTGGAGCTTCGATGTGCGGGAGCCTCGACCACCATCAGCACCTTGGTGGCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
**
63804198 GTGCGGGAGCCTATAGCACC
66 GTGCGGGAGCCTCGAGCACC
* * * * **
63804218 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCAAGCAGCATCGGTACCTTGGTACCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
*
63804283 GTGCGGGAGCCTCGAGCAGC
66 GTGCGGGAGCCTCGAGCACC
* * * * *
63804303 ATCGGTACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTAGTGG-TCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
* *
63804367 GTACGGGAGCCTCGAGCACT
66 GTGCGGGAGCCTCGAGCACC
** *
63804387 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCGGCACCTTGGTGGCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
* *
63804452 GTGCGGGAGCCTCGATCACT
66 GTGCGGGAGCCTCGAGCACC
* * * * *
63804472 ATCGGCACCTTGGTGCTAGGATGTACGGGAGACTCGAGCAGCATCGGCACCTTGGTGCCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
* *
63804537 GTCCGGGAGCCTCGAGCAGC
66 GTGCGGGAGCCTCGAGCACC
* * * *
63804557 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGT-GCTCGAAT
1 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
* *
63804621 GGGTGGGAGCCTC-AGCTACC
66 GTGCGGGAGCCTCGAGC-ACC
* * * * * *
63804641 ATCGGCAACCTTGGTGCTCGGATGTGCGGGAGCCGCGATCACCATCGACAACTTGGT-GCTAGGA
1 ATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGA
* *
63804705 TGTGCGGAAGCGTCGAGCACC
65 TGTGCGGGAGCCTCGAGCACC
63804726 A
1 A
63804727 AAGCTAAAGT
Statistics
Matches: 504, Mismatches: 85, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
83 3 0.01
84 135 0.27
85 363 0.72
86 3 0.01
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (85 bp):
ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
GTGCGGGAGCCTCGAGCACC
Found at i:63804325 original size:127 final size:127
Alignment explanation
Indices: 63804048--63804726 Score: 787
Period size: 127 Copynumber: 5.3 Consensus size: 127
63804038 ACATGGCAAT
*
63804048 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCTAGCACCATCGGCACCTTGGTGCTCGGAT
* * * * * * * *
63804113 GTGCGAGTGTCTCGACCACCATCGGCACCTTGGAGCTTC-GATGTGCGGGAGCCTCGACCACC
66 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TCCTCGGATGTGCGGGAGCCTCGAGCAGC
* * *
63804175 ATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTATAGCACCATCGGCACCTTGGTGCTGGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCTAGCACCATCGGCACCTTGGTGCTCGGAT
* * *
63804240 GTGCGGGAGCCTCAAGCAGCATCGGTACCTTGGTACCTCGGATGTGCGGGAGCCTCGAGCAGC
66 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-CCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * * *
63804303 ATCGGTACCTTGGT-GCTTGGATGTGGGGGAGCCTCGT-GCCCCATCGGCACCTTAGTGGTCGGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC-TAGCACCATCGGCACCTTGGTGCTCGGA
* * * * *
63804366 TGTACGGGAGCCTCGAGCACTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGA
65 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * *
63804429 ACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGATCACTATCGGCACCTTGGTGCTAGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCTAGCACCATCGGCACCTTGGTGCTCGGAT
* * * *
63804494 GTACGGGAGACTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTCCGGGAGCCTCGAGCAGC
66 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-CCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * *
63804557 ATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGT-GCCCCATCGGCACCTTGGTGCTCGAA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC-TAGCACCATCGGCACCTTGGTGCTCGGA
* * * * * *
63804620 TGGGTGGGAGCCTC-AGCTACCATCGGCAACCTTGGTGCTCGGATGTGCGGGAGCCGCGATCACC
65 TGTGCGGGAGCCTCGAGC-ACCATCGGC-ACCTTGGTCCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * * *
63804684 ATCGACAACTTGGT-GCTAGGATGTGCGGAAGCGTCGAGCACCA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCTAGCACCA
63804727 AAGCTAAAGT
Statistics
Matches: 465, Mismatches: 77, Indels: 20
0.83 0.14 0.04
Matches are distributed among these distances:
126 40 0.09
127 346 0.74
128 79 0.17
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (127 bp):
ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCTAGCACCATCGGCACCTTGGTGCTCGGAT
GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCTCGGATGTGCGGGAGCCTCGAGCAGC
Found at i:63804516 original size:254 final size:254
Alignment explanation
Indices: 63804048--63808738 Score: 1226
Period size: 255 Copynumber: 18.2 Consensus size: 254
63804038 ACATGGCAAT
* * * *
63804048 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
1 ATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGGAT
* * * * * * * *
63804113 GTGCGAGTGTCTCGACCACCATCGGCACCTTGGAGCTTCGATGTGCGGGAGCCTCGACCACCATC
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACAACC
* * *
63804178 AGCACCTTGGTGGCTCGGATGTGCGGGAGCCTATAGCACCATCGGCACCTTGGTGCTGGGATGTG
130 AGCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGTGCTAGGATGTA
* * *
63804243 CGGGAGCCTCAAGCAGCATCGGTACCTTGGTACCTCGGATGTGCGGGAGCCTCGAGCAGC
195 CGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAGC
* * *
63804303 ATCGGTACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTAGTGGTCGGATG
1 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGGATG
* * * * *
63804368 TACGGGAGCCTCGAGCACTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAACCG
66 TGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACAACCA
* * *
63804433 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGATCACTATCGGCACCTTGGTGCTAGGATGTAC
131 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGTGCTAGGATGTAC
* *
63804498 GGGAGACTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTCCGGGAGCCTCGAGCAGC
196 GGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAGC
*
63804557 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGAATG
1 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGGATG
* * * * * * *
63804622 GGTGGGAGCCTC-AGCTACCATCGGCAACCTTGGTGCTCGGATGTGCGGGAGCCGCGATCACCAT
66 TGCGGGAGCCTCGAGC-ACCATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACAAC
* * * * * * *
63804686 C-GACAACTTGGT-GCTAGGATGTGCGGAAGCGTCGAGCACCAAAGCTAAAGTTGGGCCCCTGTT
129 CAG-CACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCA-C----C---A--TCGGCACC--TT
* * ** ** * *** * *
63804749 GGTGC-AGGAGCGT-C-GG-G-CTAAAAAAAGTGTC-CCTGTTTCAG-ACACAT-GAATGTCGTC
181 GGTGCTAGGA-TGTACGGGAGACT-CAAGCAGCATCGGCACCTT-GGTAC-C-TCGGATGTC--C
* * * *
63804806 TGGTAGCGCATTGACCAAGTTTT
239 -GGGAGC-C-TCGAGC-AG---C
* ** * * * * * * * * * *
63804829 TTTAGCTCTTTAGGGGGGAAGTGATATTGAGCGAGCAGGGGTTGTCTAGGGCACTGCCCA-C-GC
1 ATCGGCACCTT------G--GTGCT-TGGA-TGTG--GGGG-AGCCTCGTG--C--CCCATCGGC
** * * * * * * ** * *
63804892 -CCATCTCATGCTCGGACGT-CGGG-GCCCCCTACCACCGGTTAGGTTCCTGGTTGTGCTCCGGT
49 ACC-T-TGGTGCTCGGATGTGCGGGAG-CCTCGAGCACC--ATCGGCACCT--TGGTGCT--TG-
* * * * ** * * * * * *
63804954 GATCCATCCCGGCGGTGCTCTGGTGA-TTCATCCGGCGGCGCTCCGGTGATCCATCCTGG-TAT-
104 GAT--GT-GC-G-GGAGC-CT--CGACCACAACCAGC-AC-CT-TGGTG--GC-T-C-GGATGTG
*** *** * * * * *** * * * *
63805016 ATAGAAAATA-ATGCAGCGAGTTGTC-CC--GGTCCCT-CCCTTTTC---AGA-ACAAG-AGCCT
153 CGGGAGCCTAGA-GCA-CCA-TCGGCACCTTGGT-GCTAGGATGTACGGGAGACTCAAGCAGCAT
* * * *
63805071 CCAGCACCTAGG-GCTCTTGGTCATG-CC-GGAGCACAT-GA-CAGC
214 -CGGCACCTTGGTAC-CTCGG--ATGTCCGGGAGC-C-TCGAGCAGC
** ** ** *
63805113 ATCGGCACCTTGGTGGCTCAGATGTATGGGAGCCTCGTGTACCATCGGCACCTTGGTGCTTGGAT
1 ATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGGAT
* * * * * * *
63805178 GTGCGGGAGCTTCGACCACCATCGGTACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAGC-A
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGACCA-CAA
* * * ** * * *
63805242 TCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCTAGCA-GAACAGGCACCTTGGTGGCTTGGA
128 CCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATC-GGCACCTTGGT-GCTAGGA
* ** * * ** * ** *
63805305 TGTGCGGGACCCTCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCACC
191 TGTACGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAGC
* * * * * * *
63805369 ATCGGTACCTTGGTG-TTGGGATGTGGAGGATCCTCGAGTCACATCGGCACCTTGGTGGGTCGGA
1 ATCGGCACCTTGGTGCTT-GGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGT-GCTCGGA
* * * * * * * * * * * * *
63805433 CGTCCAGGAGACTCGAACAACATCCGCACCTTGGGGCTCGGAGGTTCGGGAGCCTCGAGCACCA-
64 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACAAC
* * * * ** ** *
63805497 TAGGCACTTTGGTGGCTCGGATGTGCGGGAGCCTCGAGTAGTATCGGCACCTCAGTGCTGGGATG
129 CA-GCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGTGCTAGGATG
* * * * * * * *
63805562 TGCGGGAGCCTCGAGCAGTATCGGCACCTTGGTGGCC-CGGATGTGCGGGAGCCTCGAACGGC
193 TACGGGAGACTCAAGCAGCATCGGCACCTTGGT-ACCTCGGATGTCCGGGAGCCTCGAGCAGC
* * * * * * * *
63805624 ATAGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATTGGTACCTTGGTGGCTCAGAT
1 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGT-GCTCGGAT
* * * * * * * *
63805689 GTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGTTTGGATGTCCGGTAGTCTCGAGCCTC-AT
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA-CCACAAC
* * * * * * * * * *
63805753 CGGCACCTTGGTTGTTCAGATGTACAGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTTGGATGT
129 CAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGTGCTAGGATGT
* * ** * * * * ** * * * * *
63805818 GCGGCACCCTCGAGCACCATTGGCACCATGGTGGCTCAGACGTGCGGAAGCCTCGAGCTGC
194 ACGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAGC
* * ** * *
63805879 ATCGGTACCTTGGTGCTGGGATGTACGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGT-GCTCGGAT
* * * * ** *
63805944 GCT-CGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTGGGATTTGCGGGAGACTCGAGTACTA-
65 G-TGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACAAC
** * * * * *** * *
63806007 TTGTCAACTTTGTTGCTCGGATGTGCGGGAGCCTCGAGCTGTATTGGCACCTTGGTGCTTGGATG
129 CAG-CACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGTGCTAGGATG
* * * * * * * ** *
63806072 TGCGGGAGGCTCGAGCAGCACCGGCACCTTGAT-GCTGGGATGTGTGGGAGCCTTGAGCCA-C
193 TACGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAG-CAGC
* * *** ** * * *
63806133 ATCGGCACATTGGTGGCTCGGATGTACAGGAGCCTCCAGCACCATCGGGACCTTGGTGCTTGGAT
1 ATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGGAT
* ** ** **
63806198 GTGCGGTAGCCTCGAGCACCATC-GCTACCTTGGTTG-TTCGGATGTGTAGGAGCCTCGAGTAGT
65 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGG-TGCTT-GGATGTGCGGGAGCCTCGACCACA
* * * *
63806261 ATCAGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGC-CGCATCAGCACCTTGGTGACT-GA
127 ACCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCAC-CATCGGCACCTTGGTG-CTAG-
* * * * * * * ** * * * *
63806323 GATATGCGGGAGCCTCGAGCACCATCGGTACCTTGGT-GCGGGGATGTGCGGGAACCTTGAGCCG
189 GATGTACGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAG
63806387 C
254 C
* **** * ** ** * *
63806388 ATCGGTACCTTGGTTGC-TGAGATGACCTGGAGACTCGAACATCATCGACACCATTGG-ACTCGG
1 ATCGGCACCTTGG-TGCTTG-GATGTGGGGGAGCCTCGTGCCCCATCGGCACC-TTGGTGCTCGG
* * * *
63806451 -TGGTGCGGGAGCCTCGTGCACCATCGGCACCTTGGGGGCTCGGATGTGCGGGAGCCTCGAGCA-
63 AT-GTGCGGGAGCCTCGAGCACCATCGGCACCTT-GGTGCTTGGATGTGCGGGAGCCTCGACCAC
* * * * * * * * * **
63806514 ACATCGGTACCTTGGT-GCTGGGATGTGCAGTAGCCTCGAGTAGCATCGGCACCTTGGTGGCCCG
126 A-ACCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGT-GCTAG
* * * * * * * * *
63806578 GATGTGCGGGAGCCTCGAGCAGCATAGGCACTTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCCG
189 GATGTACGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAG
63806642 C
254 C
* * * * ** ** * *
63806643 ATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCTTCAACTTGGTGAAT-GGA
1 ATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTG-CTCGGA
* * ** ** * * *
63806707 TGTGCAGTAGCCTCGAGCAGTATCAGG-ACCTTGGTAATTGGATGTGC-GGAGACTCGAGCACCA
64 TGTGCGGGAGCCTCGAGCACCATC-GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACAA
* * * * * * * * * * *
63806770 TCGGTAGCTTGGCTAG-TCGGATGTGCTGGAGCCTGGAGCAGCATCCGCACCTCGGTGCTGGGAT
128 CCAGCACCTTGG-TGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGTGCTAGGAT
* * * * * * * * *
63806834 GTGCGGGAGCCTCGAGCAGCATCGCCACCTTGAT-GCTGGGATGTGTCGGGGAGCCTCGAGCACC
192 GTACGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGA--TGTCCGGGAGCCTCGAGCAGC
** * * * * *
63806898 ATCAGG-ACCTTGGTGCTTGGATGTTCGGTAGCCTCGAGCACCATCGGTACCTTGGTTGTTCGGA
1 ATC-GGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGG-TGCTCGGA
* * ** * * * * *
63806962 TGTGTGGGAGCCTCGAGTAGTATCAGCACCTTGCTGGTAGGATGTGCGGGAGCCTCGAGCCGC-A
64 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA-CCACAA
* * * **
63807026 TCAGCACCTTGGTGGCT-GAGATGTGCGGGAGGCTCA-AGCACCATCGGTACCTTGGTGCGGGGA
128 CCAGCACCTTGGTGGCTCG-GATGTGCGGGAGCCT-AGAGCACCATCGGCACCTTGGTGCTAGGA
** * ** * ** * * ** * * * *
63807089 TGTGGGGGAGCCTTGAGCCA-CATCGGTACCTTGGTGGCTCAGATGACCTCGAGACTCAAACATC
191 TGTACGGGAGACTCAAG-CAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAGC
** * * * * * * *
63807153 ATCAACACCATAGG-ACTCGGAGGTGCGGGAGCCTTGAT-CGCCATCGGCACCTTGGTGGCTCGG
1 ATCGGCACC-TTGGTGCTTGGATGTGGGGGAGCCTCG-TGCCCCATCGGCACCTTGGT-GCTCGG
** * * * * **
63807216 ATGTGCGGGAGCCTCGAGCAATACCGGCACCTTGGTGCTGGGATATGCAGGAGCCTCGAGTAGC-
63 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCA-CA
* * * * * * *
63807280 ATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGAT
127 ACCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGTGCTAGGAT
* * * * * * ** ** *
63807345 ATGCAGGAGCCTCGAGCCGCATCAACACCTTGGTGGCTCGGATGT-GGGGAGCCTCGAGCAGC
192 GTACGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAGC
** * * * ** * * ** ** *
63807407 ATCTTCAACTTGGTGCATGGATGCGCAGTAGCCTCGAGCAGCATCAGG-ACCTTGGTAATTGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATC-GGCACCTTGGTGCTCGGAT
* * * * *
63807471 GTGCGGGAGACTCGAGTACCATCGGCACCTTGGCTGGC-CGGATGTGCTGGAGCCTCGAGCAGC-
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-T-GCTTGGATGTGCGGGAGCCTCGACCA-CA
* * * * ** * *
63807534 ATCTGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGTATCGGCACCTTGGTTGTTCGGA
127 ACCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGG-TGCTAGGA
* ** * * * * * * * * *
63807598 TGTCCAAGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTGGGATGTGCAGGAGCCTCGACCCGT
191 TGTACGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAGC
*********************** * *** * **
63807661 ATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCGGGGAGCCGTATCGGCA
1 ATCG----------------GCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCA
* * * * * *
63807726 CCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAACATCGGAACCTTGGT-CCTGGTATGTGCGG
50 CCTT-GGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG-ATGTGCGG
* * * * * * * * * *
63807789 GAGCCTCGAGCCGC-ATCGGCACCTTGGTGTCTCGAATGCGCGGAAGCCTCGAGCACTATCGGTA
113 GAGCCTCGA-CCACAACCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCA
* * * * * * * * * *
63807853 CCTTGGTGATGGGATCTACGGGAGCCTCAAGCACCATCGGTAACTTAGTTGA-AT-GGATGT-AG
177 CCTTGGTGCTAGGATGTACGGGAGACTCAAGCAGCATCGGCACCTT-GGT-ACCTCGGATGTCCG
* *
63807915 GAGAGCCCCGAGTAGC
240 G-GAGCCTCGAGCAGC
* * * * ** *
63807931 ATCGGTACCTTGGTGCTTGGATGTGCGTGAGCCTCGAGCAACATCGGTACCTTGGTGGCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGT-GCTCGGAT
* * * * *
63807996 GTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGC-TGGAATGTGCAGGAGCCGCGAGCCGC-A
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG-ATGTGCGGGAGCCTCGA-CCACAA
* * * * * * ** * *
63808059 TCGGCACCTTGGTGGCTCAGATGTGCAGGAGACTCA-AGCACCATTGGTTCCTTGGTACTCGGAT
128 CCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCT-AGAGCACCATCGGCACCTTGGTGCTAGGAT
** * * * * ** * * *
63808123 GTGGGGGAGCCTCTAGCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCACC
192 GTACGGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAGC
* * * ** * * * *
63808186 ATCGGTACCTCGCTGCTCAGATCTGAGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT
1 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGT-GCTCGGAT
* ** * * * *
63808251 GAGC-GGAGCCTCGAGCGGCTTCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGC-AT
65 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCA-CAAC
* * * * * *
63808314 CAACACCTTGGT-GCTGGGATGTGTGGGAGCCTCGAGC-CACATCGGAACCTTGGTGGCTCGGAT
129 CAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCAC-CATCGGCACCTTGGT-GCTAGGAT
* * * * * ** * * * ** *
63808377 TTGCGGTAGCCTCGAGCA-CTATTTGTATCTTGG--CGCTTGGATGTGTGGGAGCCTCGAGCACC
192 GTACGGGAGACTCAAGCAGC-ATCGGCACCTTGGTAC-CTCGGATGTCCGGGAGCCTCGAGCAGC
* * * * ** * ** * *
63808439 GTCGGTACCATGGTGGCTCGGATGTACGGGAGCCTCGAGCAGCATCGGCACCCTGGTGGTTC-GA
1 ATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGT-GCTCGGA
*** * * * * * * * * *
63808503 TGTGTAAGAGCCTCGAGTAGCATCCGTACTTTAGTGCTGGGATGTGCGGGAGCCTC-CCCACAGC
64 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACAAC
* * * * * * * * *
63808567 C-GACACCTTGGTGGCGCAGATGCGCGGGAGCCTCGTGCAGCACCGGCACCTCGGTGGCTCGGAT
129 CAG-CACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGT-GCTAGGAT
* * * * * ** *
63808631 GTGCTGGA-ACCCCGAGCAGCATCGGCACCTAGG-AGGTCGGATGTGCC-GGAGCCTCGAGCACC
192 GTACGGGAGA-CTCAAGCAGCATCGGCACCTTGGTACCTCGGATGT-CCGGGAGCCTCGAGCAGC
** * ** * *
63808693 ATCAACACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGCTCCATC
1 ATCGGCACCTTGGTG-CTTGGATGTGGGGGAGCCTCGTGCCCCATC
63808739 CGCAACTTTG
Statistics
Matches: 3320, Mismatches: 879, Indels: 475
0.71 0.19 0.10
Matches are distributed among these distances:
248 6 0.00
249 4 0.00
250 7 0.00
251 7 0.00
252 5 0.00
253 240 0.07
254 968 0.29
255 1390 0.42
256 215 0.06
257 19 0.01
258 3 0.00
259 3 0.00
260 1 0.00
261 1 0.00
262 9 0.00
263 14 0.00
264 12 0.00
265 7 0.00
266 17 0.01
267 5 0.00
268 16 0.00
269 77 0.02
270 103 0.03
271 21 0.01
272 11 0.00
273 3 0.00
275 1 0.00
276 4 0.00
277 2 0.00
278 2 0.00
280 4 0.00
281 3 0.00
282 2 0.00
284 10 0.00
285 5 0.00
286 3 0.00
287 15 0.00
288 16 0.00
289 9 0.00
290 13 0.00
292 6 0.00
293 10 0.00
294 8 0.00
295 6 0.00
296 1 0.00
297 1 0.00
298 6 0.00
299 4 0.00
300 4 0.00
301 3 0.00
302 2 0.00
303 3 0.00
306 2 0.00
307 7 0.00
308 2 0.00
309 2 0.00
ACGTcount: A:0.17, C:0.26, G:0.34, T:0.22
Consensus pattern (254 bp):
ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGGATG
TGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACAACCA
GCACCTTGGTGGCTCGGATGTGCGGGAGCCTAGAGCACCATCGGCACCTTGGTGCTAGGATGTAC
GGGAGACTCAAGCAGCATCGGCACCTTGGTACCTCGGATGTCCGGGAGCCTCGAGCAGC
Found at i:63804972 original size:24 final size:24
Alignment explanation
Indices: 63804944--63805009 Score: 98
Period size: 23 Copynumber: 2.8 Consensus size: 24
63804934 GTTCCTGGTT
63804944 GTGCTCCGGTGATCCATCCCGGCG
1 GTGCTCCGGTGATCCATCCCGGCG
* *
63804968 GTGCTCTGGTGATTCAT-CCGGCG
1 GTGCTCCGGTGATCCATCCCGGCG
*
63804991 GCGCTCCGGTGATCCATCC
1 GTGCTCCGGTGATCCATCC
63805010 TGGTATATAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 20 0.56
24 16 0.44
ACGTcount: A:0.09, C:0.35, G:0.32, T:0.24
Consensus pattern (24 bp):
GTGCTCCGGTGATCCATCCCGGCG
Found at i:63805145 original size:43 final size:43
Alignment explanation
Indices: 63805109--63808732 Score: 2248
Period size: 42 Copynumber: 85.0 Consensus size: 43
63805099 GAGCACATGA
* ** *
63805109 CAGCATCGGCACCTTGGTGGCTCAGATGTATGGGAGCCTCGTG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * *
63805152 TACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCTTCGAC
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63805194 CACCATCGGTACCTTGGTGGCTCGGATATGCGGGAGACTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* *
63805237 CAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCTAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63805279 CAG-AACAGGCACCTTGGTGGCTTGGATGTGCGGGACCCTCGAG
1 CAGCATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63805322 CCGCATCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * *
63805365 CACCATCGGTACCTTGGT-GTTGGGATGTG-GAGGATCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCG-GGAGCCTCGAG
* * * * * *
63805407 TCA-CATCGGCACCTTGGTGGGTCGGACGTCCAGGAGACTCGAA
1 -CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63805450 CAACATCCGCACCTTGG-GGCTCGGAGGTTCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63805492 CACCATAGGCACTTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * ** *
63805535 TAGTATCGGCACCTCAGT-GCTGGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63805577 CAGTATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAA
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63805620 CGGCATAGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63805662 CCGCATTGGTACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * * *
63805705 CAGCATCGGTACCTTGGT-GTTTGGATGTCCGGTAGTCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
** * * * * *
63805747 CCTCATCGGCACCTTGGTTGTTCAGATGTACAGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63805790 CAGCATCGGTACCTTGGT-GCTTGGATGTGCGGCACCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * * *
63805832 CACCATTGGCACCATGGTGGCTCAGACGTGCGGAAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63805875 CTGCATCGGTACCTTGGT-GCTGGGATGTACGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
*
63805917 CCGCATCGGCACCTTGGTGGCTCGGATGCT-CGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATG-TGCGGGAGCCTCGAG
* * * * *
63805960 CACCATCGGTACCTTGGT-GCTGGGATTTGCGGGAGACTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * * *
63806002 TA-CTATTGTCAACTTTGTTGCTCGGATGTGCGGGAGCCTCGAG
1 CAGC-ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * *
63806045 CTGTATTGGCACCTTGGT-GCTTGGATGTGCGGGAGGCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * *
63806087 CAGCACCGGCACCTTGAT-GCTGGGATGTGTGGGAGCCTTGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63806129 CCA-CATCGGCACATTGGTGGCTCGGATGTACAGGAGCCTCCAG
1 -CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63806172 CACCATCGGGACCTTGGT-GCTTGGATGTGCGGTAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * **
63806214 CACCATC-GCTACCTTGGTTGTTCGGATGTGTAGGAGCCTCGAG
1 CAGCATCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63806257 TAGTATCAGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63806299 CCGCATCAGCACCTTGGTGACT-GAGATATGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCG-GATGTGCGGGAGCCTCGAG
* * ** * *
63806342 CACCATCGGTACCTTGGT-GCGGGGATGTGCGGGAACCTTGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * ** * * *
63806384 CCGCATCGGTACCTTGGTTGCT-GAGATGACCTGGAGACTCGAA
1 CAGCATCGGCACCTTGGTGGCTCG-GATGTGCGGGAGCCTCGAG
* * * *
63806427 CATCATCGACACCATT-G-GACTCGG-TGGTGCGGGAGCCTCGTG
1 CAGCATCGGCACC-TTGGTGGCTCGGAT-GTGCGGGAGCCTCGAG
* *
63806469 CACCATCGGCACCTTGGGGGCTCGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * *
63806512 CAACATCGGTACCTTGGT-GCTGGGATGTGCAGTAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* *
63806554 TAGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63806597 CAGCATAGGCACTTTGGT-GCTGGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* *
63806639 CCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
** * ** * *
63806682 CAGCATCTTCAACTTGGTGAAT-GGATGTGCAGTAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* ** * *
63806724 CAGTATCAGG-ACCTTGGT-AATTGGATGTGC-GGAGACTCGAG
1 CAGCATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * * *
63806765 CACCATCGGTAGCTTGGCTAG-TCGGATGTGCTGGAGCCTGGAG
1 CAGCATCGGCACCTTGG-TGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63806808 CAGCATCCGCACCTCGGT-GCTGGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63806850 CAGCATCGCCACCTTGAT-GCTGGGATGTGTCGGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTG-C-GGGAGCCTCGAG
* * * *
63806894 CACCATCAGG-ACCTTGGT-GCTTGGATGTTCGGTAGCCTCGAG
1 CAGCATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * *
63806936 CACCATCGGTACCTTGGTTGTTCGGATGTGTGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * *
63806979 TAGTATCAGCACCTTGCTGG-TAGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63807021 CCGCATCAGCACCTTGGTGGCT-GAGATGTGCGGGAGGCTCAAG
1 CAGCATCGGCACCTTGGTGGCTCG-GATGTGCGGGAGCCTCGAG
* * ** * *
63807064 CACCATCGGTACCTTGGT-GCGGGGATGTGGGGGAGCCTTGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * ** ** * * *
63807106 CCA-CATCGGTACCTTGGTGGCTCAGATGACCTCGAGACTCAAA
1 -CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* ** * * * * * *
63807149 CATCATCAACACCATAG-GACTCGGAGGTGCGGGAGCCTTGAT
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
63807191 C-GCCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
1 CAG-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
** * * * *
63807234 CAATACCGGCACCTTGGT-GCTGGGATATGCAGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* *
63807276 TAGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * *
63807319 CAGCATAGGCACCTTGGT-GCTGGGATATGCAGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* **
63807361 CCGCATCAACACCTTGGTGGCTCGGATGTG-GGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
** * * * *
63807403 CAGCATCTTCAACTTGGT-GCAT-GGATGCGCAGTAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGC-TCGGATGTGCGGGAGCCTCGAG
** * *
63807445 CAGCATCAGG-ACCTTGGT-AATTGGATGTGCGGGAGACTCGAG
1 CAGCATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63807487 TACCATCGGCACCTTGGCTGGC-CGGATGTGCTGGAGCCTCGAG
1 CAGCATCGGCACCTTGG-TGGCTCGGATGTGCGGGAGCCTCGAG
* *
63807530 CAGCATCTGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * **
63807572 CAGTATCGGCACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63807615 CAGCATCGGCACCTTGGT-GCTGGGATGTGCAGGAGCCTCGAC
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * ***********************************
63807657 CCGTATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CAGCATCG---GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
** * * * * * *
63807703 NGGC-GCGGGGAGCCGT-ATCGGCAC--CT-TG-GGG-G-CTCG-G
1 CAGCATC-GGCA-CCTTGGT-GGCTCGGATGTGCGGGAGCCTCGAG
** * * *** * *
63807740 -ATGTGT-GGGAGCCTTAGCAACATCGGAACCTTGGTCCTGGTATG--TGCG-G
1 CA-GCATCGGCA-CCTTGGTGGC-TCGG-A---T-GTGC-GGGA-GCCT-CGAG
* * * *** * * * *
63807789 GAGCCTCGAGC-CGCATCGGCACCTTGG-TGT-CTCGAATGCGC-GGAAG
1 CAGCATCG-GCAC-C-TTGGTGGCTCGGATGTGC-GGGA-GC-CTCG-AG
* * * * * *
63807835 CCTCGAGCACTATCGGTACCTTGGT-GATGGGATCTACGGGAGCCTCAAG
1 ---C-AG--C-ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * ** * *
63807884 CACCATCGGTAACTTAGTTGAAT-GGATGTAG-GAGAGCCCCGAG
1 CAGCATCGGCACCTT-GGTGGCTCGGATGT-GCGGGAGCCTCGAG
* * * *
63807927 TAGCATCGGTACCTTGGT-GCTTGGATGTGCGTGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* *
63807969 CAACATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63808012 CAGCATCGACACCTTGGT-GCT-GGAATGTGCAGGAGCCGCGAG
1 CAGCATCGGCACCTTGGTGGCTCGG-ATGTGCGGGAGCCTCGAG
* * * * *
63808054 CCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGACTCAAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * ** * * *
63808097 CACCATTGGTTCCTTGGT-ACTCGGATGTGGGGGAGCCTCTAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63808139 CCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGACTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * * * *
63808182 CACCATCGGTACCTCGCT-GCTCAGATCTGAGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* *
63808224 CACCATCGGCACCTTGGTGGCTCGGATGAGC-GGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63808266 CGGCTTCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
** * *
63808308 CAGCATCAACACCTTGGT-GCTGGGATGTGTGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63808350 CCA-CATCGGAACCTTGGTGGCTCGGATTTGCGGTAGCCTCGAG
1 -CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
** * * * * *
63808393 CA-CTATTTGTATCTTGG-CGCTTGGATGTGTGGGAGCCTCGAG
1 CAGC-ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * *
63808435 CACCGTCGGTACCATGGTGGCTCGGATGTACGGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * ***
63808478 CAGCATCGGCACCCTGGTGGTTC-GATGTGTAAGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * * * *
63808520 TAGCATCCGTACTTTAGT-GCTGGGATGTGCGGGAGCCTCCCCA-
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCT--CGAG
* * * * *
63808563 CAGC--CGACACCTTGGTGGCGCAGATGCGCGGGAGCCTCGTG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * *
63808604 CAGCACCGGCACCTCGGTGGCTCGGATGTGCTGGAACCCCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* * *
63808647 CAGCATCGGCACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
* ** * *
63808689 CACCATCAACACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAG
1 CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
63808732 C
1 C
63808733 TCCATCCGCA
Statistics
Matches: 2747, Mismatches: 693, Indels: 282
0.74 0.19 0.08
Matches are distributed among these distances:
36 9 0.00
37 2 0.00
40 3 0.00
41 75 0.03
42 1380 0.50
43 1172 0.43
44 50 0.02
45 5 0.00
46 4 0.00
47 2 0.00
48 1 0.00
49 10 0.00
50 13 0.00
51 13 0.00
52 4 0.00
53 4 0.00
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.21
Consensus pattern (43 bp):
CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
Found at i:63805229 original size:85 final size:84
Alignment explanation
Indices: 63805109--63808738 Score: 2136
Period size: 85 Copynumber: 42.6 Consensus size: 84
63805099 GAGCACATGA
* ** * * *
63805109 CAGCATCGGCACCTTGGTGGCTCAGATGTATGGGAGCCTCGTGTACCATCGGCACCTTGGTGCTT
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
* *
63805174 GGATGTGCGGGAGCTTCGAC
65 GGATGTGCGGGAGCCTCGAG
* * * * * *
63805194 CACCATCGGTACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAGCATCGGCACCTTGGTGCTT
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
*
63805259 GGATGTGCGGGAGCCTCTAG
65 GGATGTGCGGGAGCCTCGAG
* * *
63805279 CAG-AACAGGCACCTTGGTGGCTTGGATGTGCGGGACCCTCGAGC-CGCATCGGCACCTTGGTGG
1 CAGCATC-GGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-G
* *
63805342 CTCAGATGTGTGGGAGCCTCGAG
62 CTCGGATGTGCGGGAGCCTCGAG
* * * * * *
63805365 CACCATCGGTACCTTGGTGTTGGGATGTG-GAGGATCCTCGAGTCA-CATCGGCACCTTGGTGGG
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCG-GGAGCCTCGAG-CACCATCGGCACCTTGGT-GC
* * * * *
63805428 TCGGACGTCCAGGAGACTCGAA
63 TCGGATGTGCGGGAGCCTCGAG
* * * * * * *
63805450 CAACATCCGCACCTTGGGGCTCGGAGGTTCGGGAGCCTCGAGCACCATAGGCACTTTGGTGGCTC
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTC
63805515 GGATGTGCGGGAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAG
* * ** * ** *
63805535 TAGTATCGGCACCTCAGTGCTGGGATGTGCGGGAGCCTCGAGCAGTATCGGCACCTTGGTGGCCC
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTC
*
63805600 GGATGTGCGGGAGCCTCGAA
65 GGATGTGCGGGAGCCTCGAG
* * * * *
63805620 CGGCATAGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGC-CGCATTGGTACCTTGGTGGCT
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCT
*
63805684 CAGATGTGCGGGAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * * * * * *
63805705 CAGCATCGGTACCTTGGTGTTTGGATGTCCGGTAGTCTCGAGC-CTCATCGGCACCTTGGTTGTT
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGG-TGCT
* * *
63805769 CAGATGTACAGGAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * * * * *
63805790 CAGCATCGGTACCTTGGTGCTTGGATGTGCGGCACCCTCGAGCACCATTGGCACCATGGTGGCTC
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTC
* * *
63805855 AGACGTGCGGAAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAG
* * * *
63805875 CTGCATCGGTACCTTGGTGCTGGGATGTACGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGGCT
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCT
63805939 CGGATGCT-CGGGAGCCTCGAG
64 CGGATG-TGCGGGAGCCTCGAG
* * * * * * * * * * *
63805960 CACCATCGGTACCTTGGTGCTGGGATTTGCGGGAGACTCGAGTACTATTGTCAACTTTGTTGCTC
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTC
63806025 GGATGTGCGGGAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAG
* * * * * * * * *
63806045 CTGTATTGGCACCTTGGTGCTTGGATGTGCGGGAGGCTCGAGCAGCACCGGCACCTTGATGCTGG
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCG
* *
63806110 GATGTGTGGGAGCCTTGAG
66 GATGTGCGGGAGCCTCGAG
* * * * *
63806129 CCA-CATCGGCACATTGGTGGCTCGGATGTACAGGAGCCTCCAGCACCATCGGGACCTTGGTGCT
1 -CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
63806193 TGGATGTGCGGTAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * ** * ** *
63806214 CACCATC-GCTACCTTGGTTGTTCGGATGTGTAGGAGCCTCGAGTAGTATCAGCACCTTGGTGCT
1 CAGCATCGGC-ACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
63806278 GGGATGTGCGGGAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * * * *
63806299 CCGCATCAGCACCTTGGTGACT-GAGATATGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCG
1 CAGCATCGGCACCTTGGTG-CTCG-GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * *
63806363 GGGATGTGCGGGAACCTTGAG
64 CGGATGTGCGGGAGCCTCGAG
* * ** * * * * * *
63806384 CCGCATCGGTACCTTGGTTGCT-GAGATGACCTGGAGACTCGAACATCATCGACACCATTGG-AC
1 CAGCATCGGCACCTTGG-TGCTCG-GATGTGCGGGAGCCTCGAGCACCATCGGCACC-TTGGTGC
*
63806447 TCGG-TGGTGCGGGAGCCTCGTG
63 TCGGAT-GTGCGGGAGCCTCGAG
* * * * *
63806469 CACCATCGGCACCTTGGGGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGTACCTTGGTGCTG
1 CAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
* *
63806534 GGATGTGCAGTAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAG
* * * * * *
63806554 TAGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACTTTGGTGCTG
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
63806619 GGATGTGCGGGAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAG
* * * ** * *
63806639 CCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCTTCAACTTGGTGAAT
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CT
* *
63806704 -GGATGTGCAGTAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* ** * * * *
63806724 CAGTATCAGG-ACCTTGGTAATTGGATGTGC-GGAGACTCGAGCACCATCGGTAGCTTGGCTAG-
1 CAGCATC-GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-T-GC
* *
63806786 TCGGATGTGCTGGAGCCTGGAG
63 TCGGATGTGCGGGAGCCTCGAG
* * * * * * *
63806808 CAGCATCCGCACCTCGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGCCACCTTGATGCTGG
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCG
63806873 GATGTGTCGGGGAGCCTCGAG
66 GATGTG-C-GGGAGCCTCGAG
* * * * * *
63806894 CACCATCAGG-ACCTTGGTGCTTGGATGTTCGGTAGCCTCGAGCACCATCGGTACCTTGGTTGTT
1 CAGCATC-GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TGCT
*
63806958 CGGATGTGTGGGAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * * * * * *
63806979 TAGTATCAGCACCTTGCTGGTAGGATGTGCGGGAGCCTCGAGC-CGCATCAGCACCTTGGTGGCT
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCT
* *
63807043 -GAGATGTGCGGGAGGCTCAAG
64 CG-GATGTGCGGGAGCCTCGAG
* * ** * * *
63807064 CACCATCGGTACCTTGGTGCGGGGATGTGGGGGAGCCTTGAGC-CACATCGGTACCTTGGTGGCT
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCT
* ** ** * * *
63807128 CAGATGACCTCGAGACTCAAA
64 CGGATGTGCGGGAGCCTCGAG
* ** * * * * * *
63807149 CATCATCAACACCATAGG-ACTCGGAGGTGCGGGAGCCTTGATCGCCATCGGCACCTTGGTGGCT
1 CAGCATCGGCACC-TTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCT
63807213 CGGATGTGCGGGAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
** * * * * * * *
63807234 CAATACCGGCACCTTGGTGCTGGGATATGCAGGAGCCTCGAGTAGCATCGGCACCTTGGTGGCCC
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTC
63807299 GGATGTGCGGGAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAG
* * * * **
63807319 CAGCATAGGCACCTTGGTGCTGGGATATGCAGGAGCCTCGAGC-CGCATCAACACCTTGGTGGCT
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCT
63807383 CGGATGTG-GGGAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
** * * * * * **
63807403 CAGCATCTTCAACTTGGTGCAT-GGATGCGCAGTAGCCTCGAGCAGCATCAGG-ACCTTGGTAAT
1 CAGCATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCACCATC-GGCACCTTGGTGCT
* *
63807466 TGGATGTGCGGGAGACTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * * * *
63807487 TACCATCGGCACCTTGGCTGGC-CGGATGTGCTGGAGCCTCGAGCAGCATCTGCACCTTGGTGCT
1 CAGCATCGGCACCTTGG-T-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
63807551 GGGATGTGCGGGAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * * ** * *
63807572 CAGTATCGGCACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
1 CAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
* *
63807637 GGATGTGCAGGAGCCTCGAC
65 GGATGTGCGGGAGCCTCGAG
* * *************************************** * ** *
63807657 CCGTATC-G-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGC-GCGGGGAGCCGT
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-C--
63807719 ATCGGCACCT-TG-GGG-G-CTCG-G
63 -TCGG-A--TGTGCGGGAGCCTCGAG
** * *** * * *
63807740 -ATGTGT-GGGAGCCTTAGCAACATCGGAACCTTGGTCCTGGTATG--TGCG-GGAGCC-TCGAG
1 CA-GCATCGGCA-CCTT-GGTGC-TCGG-A---T-GTGC-GGGA-GCCT-CGAGCA-CCATCG-G
* ** * * * *
63807799 C-CGCATCGGCACCTTGG-TGT-CTCGAATG-CGCG-G
52 CAC-C-TTGG-TGCTCGGATGTGC-GGGA-GCCTCGAG
* * * * * * * * *
63807832 AAGCCTCGAGCACTATCGGTACCTTGGTGATGGGATCTACGGGAGCCTCAAGCACCATCGGTAAC
1 CAGCATCG-G------C---ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACC
* * * *
63807897 TTAGTTGAAT-GGATGTAG-GAGAGCCCCGAG
56 TT-GGTG-CTCGGATGT-GCGGGAGCCTCGAG
* * * * * *
63807927 TAGCATCGGTACCTTGGTGCTTGGATGTGCGTGAGCCTCGAGCAACATCGGTACCTTGGTGGCTC
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTC
63807992 GGATGTGCGGGAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAG
* * *
63808012 CAGCATCGACACCTTGGTGCT-GGAATGTGCAGGAGCCGCGAGC-CGCATCGGCACCTTGGTGGC
1 CAGCATCGGCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GC
* * * *
63808075 TCAGATGTGCAGGAGACTCAAG
63 TCGGATGTGCGGGAGCCTCGAG
* * ** * * * *
63808097 CACCATTGGTTCCTTGGTACTCGGATGTGGGGGAGCCTCTAGC-CGCATCGACACCTTGGTGGCT
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCT
*
63808161 CGGATGTGCGGGAGACTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * * * * * *
63808182 CACCATCGGTACCTCGCTGCTCAGATCTGAGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTC
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTC
*
63808247 GGATGAGC-GGAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAG
* * * * ** *
63808266 CGGCTTCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCAACACCTTGGTGCTGG
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCG
*
63808331 GATGTGTGGGAGCCTCGAG
66 GATGTGCGGGAGCCTCGAG
* * * * ** * * *
63808350 CCA-CATCGGAACCTTGGTGGCTCGGATTTGCGGTAGCCTCGAGCACTATTTGTATCTTGGCGCT
1 -CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
63808414 TGGATGTGTGGGAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * * * * * * *
63808435 CACCGTCGGTACCATGGTGGCTCGGATGTACGGGAGCCTCGAGCAGCATCGGCACCCTGGTGGTT
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCT
***
63808500 C-GATGTGTAAGAGCCTCGAG
64 CGGATGTGCGGGAGCCTCGAG
* * * * * * ** * * *
63808520 TAGCATCCGTACTTTAGTGCTGGGATGTGCGGGAGCCTC-CCCA-CAGCCGACACCTTGGTGGCG
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA-TCGGCACCTTGGT-GCT
* * *
63808583 CAGATGCGCGGGAGCCTCGTG
64 CGGATGTGCGGGAGCCTCGAG
* * * * * * * * *
63808604 CAGCACCGGCACCTCGGTGGCTCGGATGTGCTGGAACCCCGAGCAGCATCGGCACCTAGGAGGTC
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
*
63808669 GGATGTGCCGGAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAG
* ** * *
63808689 CACCATCAACACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGCTCCATC
1 CAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCATC
63808739 CGCAACTTTG
Statistics
Matches: 2723, Mismatches: 685, Indels: 274
0.74 0.19 0.07
Matches are distributed among these distances:
81 4 0.00
82 6 0.00
83 61 0.02
84 348 0.13
85 2072 0.76
86 141 0.05
87 17 0.01
88 2 0.00
89 1 0.00
90 1 0.00
92 11 0.00
93 9 0.00
94 20 0.01
95 18 0.01
96 2 0.00
99 1 0.00
100 3 0.00
101 1 0.00
102 4 0.00
103 1 0.00
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.21
Consensus pattern (84 bp):
CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCG
GATGTGCGGGAGCCTCGAG
Found at i:63805416 original size:170 final size:169
Alignment explanation
Indices: 63805113--63808732 Score: 2357
Period size: 170 Copynumber: 21.2 Consensus size: 169
63805103 ACATGACAGC
* ** * * *
63805113 ATCGGCACCTTGGTGGCTCAGATGTATGGGAGCCTCGTGTAC-CATCGGCACCTTGGT-GCTTGG
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CCGCATCGGCACCTTGGTGGCTCGG
* * * * * *
63805176 ATGTGCGGGAGCTTCGACCACCATCGGTACCTTGGTGGCTCGGATATGCG-GGAGACTCGAGCAG
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGT-GCTGGGATGTG-GAGGAGCCTCGAGCAG
* *
63805240 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCTAGCAG
128 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAG
* * * *
63805282 AACAGGCACCTTGGTGGCTTGGATGTGCGGGACCCTCGAGCCGCATCGGCACCTTGGTGGCTCAG
1 ATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGG
* * * *
63805347 ATGTGTGGGAGCCTCGAGCACCATCGGTACCTTGGTGTTGGGATGTGGAGGATCCTCGAGTCA-C
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTGGAGGAGCCTCGAG-CAGC
* * * * * * *
63805411 ATCGGCACCTTGGTGGGTCGGACGTCCAGGAGACTCGAACAAC
129 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC-AG
* * * * *
63805454 ATCCGCACCTTGG-GGCTCGGAGGTTCGGGAGCCTCGAGCAC-CATAGGCACTTTGGTGGCTCGG
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGGCTCGG
* * * ** *
63805517 ATGTGCGGGAGCCTCGAGTAGTATCGGCACCTCAGTGCTGGGATGTGCG-GGAGCCTCGAGCAGT
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTG-GAGGAGCCTCGAGCAGC
* * *
63805581 ATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAACGG
129 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAG
* * * * *
63805623 CATAGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCCGCATTGGTACCTTGGTGGCTCAG
1 -ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGG
* * * * * **
63805687 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGTTTGGATGTCCG-GTAGTCTCGAGCCTC
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGT-GGAGGAGCCTCGAGCAGC
* * * *
63805751 ATCGGCACCTTGGTTGTTCAGATGTACAGGAGCCTCGAGCAG
129 ATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAG
* * * * * * *
63805793 CATCGGTACCTTGGT-GCTTGGATGTGCGGCACCCTCGAGCAC-CATTGGCACCATGGTGGCTCA
1 -ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGGCTCG
* * * * *
63805856 GACGTGCGGAAGCCTCGAGCTGCATCGGTACCTTGGTGCTGGGATGTACG-GGAGCCTCGAGCCG
64 GATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGT-GGAGGAGCCTCGAGCAG
*
63805920 CATCGGCACCTTGGTGGCTCGGATGCT-CGGGAGCCTCGAGCACC
128 CATCGGCACCTTGGT-GCTCGGATG-TGCGGGAGCCTCGAGCA-G
* * * * * * * * * * *
63805964 ATCGGTACCTTGGT-GCTGGGATTTGCGGGAGACTCGAGTAC-TATTGTCAACTTTGTTGCTCGG
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CCGCATCGGCACCTTGGTGGCTCGG
* * * * * *
63806027 ATGTGCGGGAGCCTCGAGCTGTATTGGCACCTTGGTGCTTGGATGTGCG-GGAGGCTCGAGCAGC
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTG-GAGGAGCCTCGAGCAGC
* * * * * *
63806091 ACCGGCACCTTGATGCTGGGATGTGTGGGAGCCTTGAGCCAC
129 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CAG
* * * * * *
63806133 ATCGGCACATTGGTGGCTCGGATGTACAGGAGCCTCCAGCAC-CATCGGGACCTTGGT-GCTTGG
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGGCTCGG
* * * * * * * *
63806196 ATGTGCGGTAGCCTCGAGCACCATCGCTACCTTGGTTGTTCGGATGTGTAGGAGCCTCGAGTAGT
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGG-TGCTGGGATGTGGAGGAGCCTCGAGCAGC
* * *
63806261 ATCAGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCG
129 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAG
* * * * **
63806302 CATCAGCACCTTGGTGACT-GAGATATGCGGGAGCCTCGAGCAC-CATCGGTACCTTGGT-GCGG
1 -ATCGGCACCTTGGTGGCTCG-GATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGGCTC
* * * * **** * *
63806364 GGATGTGCGGGAACCTTGAGCCGCATCGGTACCTTGGTTGCTGAGATGACCTGGAGACTCGAACA
63 GGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGG-TGCTGGGATGTGGAGGAGCCTCGAGCA
* * * * *
63806429 TCATCGACACCATTGG-ACTCGG-TGGTGCGGGAGCCTCGTGCACC
127 GCATCGGCACC-TTGGTGCTCGGAT-GTGCGGGAGCCTCGAGCA-G
* ** * *
63806473 ATCGGCACCTTGGGGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGTACCTTGGT-GCTGGGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGA
* * * * **
63806537 TGTGCAGTAGCCTCGAGTAGCATCGGCACCTTGGTGGCCCGGATGTGCG-GGAGCCTCGAGCAGC
66 TGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGT-GCTGGGATGTG-GAGGAGCCTCGAGCAGC
* * * *
63806601 ATAGGCACTTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCG
129 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAG
* * ** * **
63806642 CATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCTTCAACTTGGTGAAT-GG
1 -ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGG
* * * ** * * * *
63806706 ATGTGCAGTAGCCTCGAGCAGTATCAGG-ACCTTGGTAATTGGATGT-GCGGAGACTCGAGCACC
65 ATGTGCGGGAGCCTCGAGCAGCATC-GGTACCTTGGTGCTGGGATGTGGAGGAGCCTCGAGCAGC
* * * *
63806769 ATCGGTAGCTTGGCTAG-TCGGATGTGCTGGAGCCTGGAGCAG
129 ATCGGCACCTTGG-T-GCTCGGATGTGCGGGAGCCTCGAGCAG
* * * * * * *
63806811 CATCCGCACCTCGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCATCGCCACCTTGAT-GCTGGG
1 -ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGG
* * * *
63806874 ATGTGTCGGGGAGCCTCGAGCACCATCAGG-ACCTTGGTGCTTGGATGTTCG-GTAGCCTCGAGC
65 ATGTG-C-GGGAGCCTCGAGCAGCATC-GGTACCTTGGTGCTGGGATG-TGGAGGAGCCTCGAGC
* * * * *
63806937 ACCATCGGTACCTTGGTTGTTCGGATGTGTGGGAGCCTCGAGTAG
126 AGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAG
* * * *
63806982 TATCAGCACCTTGCTGG-TAGGATGTGCGGGAGCCTCGAGCCGCATCAGCACCTTGGTGGCT-GA
1 -ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCG-
* * * * * *
63807045 GATGTGCGGGAGGCTCAAGCACCATCGGTACCTTGGTGCGGGGATGTGGGGGAGCCTTGAGCCA-
64 GATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTGGAGGAGCCTCGAG-CAG
* * ** ** * * * *
63807109 CATCGGTACCTTGGTGGCTCAGATGACCTCGAGACTCAAACATC
128 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA-G
** * * * * * *
63807153 ATCAACACCATAG-GACTCGGAGGTGCGGGAGCCTTGA-TCGCCATCGGCACCTTGGTGGCTCGG
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCG-CATCGGCACCTTGGTGGCTCGG
** * * * * *
63807216 ATGTGCGGGAGCCTCGAGCAATACCGGCACCTTGGTGCTGGGATATGCAGGAGCCTCGAGTAGCA
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTGGAGGAGCCTCGAGCAGCA
*
63807281 TCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAG
130 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAG
* * * * **
63807322 CATAGGCACCTTGGT-GCTGGGATATGCAGGAGCCTCGAGCCGCATCAACACCTTGGTGGCTCGG
1 -ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGG
* * * * *
63807386 ATGTG-GGGAGCCTCGAGCAGCATC-TTCAACTTGGTGCAT-GGATGCGCAGTAGCCTCGAGCAG
65 ATGTGCGGGAGCCTCGAGCAGCATCGGT-ACCTTGGTGC-TGGGATGTGGAGGAGCCTCGAGCAG
** * * * *
63807448 CATCAGG-ACCTTGGTAATTGGATGTGCGGGAGACTCGAGTACC
128 CATC-GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA-G
* * * *
63807491 ATCGGCACCTTGGCTGGC-CGGATGTGCTGGAGCCTCGAGCAGCATCTGCACCTTGGT-GCTGGG
1 ATCGGCACCTTGG-TGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGG
* * * * ** *
63807554 ATGTGCGGGAGCCTCGAGCAGTATCGGCACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGC
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGG-TGCTGGGATGTGGAGGAGCCTCGAGCAGC
* * * *
63807619 ATCGGCACCTTGGTGCTGGGATGTGCAGGAGCCTCGACCCG
129 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAG
************************ * *** *
63807660 TATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCGGGGAGCCGTATCGGC
1 -ATCG---------------GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGC
* * * * * * *
63807725 ACCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAACATCGGAACCTTGGTCCTGGTATGTGCG-
50 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTG-GA
* * * * *
63807788 GGAGCCTCGAGCCGCATCGGCACCTTGGTGTCTCGAATGCGCGGAAGCCTCGAGCACT
114 GGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCA-G
* * * * * * * * * **
63807846 ATCGGTACCTTGGT-GATGGGATCTACGGGAGCCTCAAGCAC-CATCGGTAACTTAGTTGAAT-G
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTT-GGTGGCTCG
* * * * *
63807908 GATGTAG-GAGAGCCCCGAGTAGCATCGGTACCTTGGTGCTTGGATGTGCG-TGAGCCTCGAGCA
64 GATGT-GCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTG-GAGGAGCCTCGAGCA
* *
63807971 ACATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAG
127 GCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAG
* * * *
63808015 CATCGACACCTTGGT-GCT-GGAATGTGCAGGAGCCGCGAGCCGCATCGGCACCTTGGTGGCTCA
1 -ATCGGCACCTTGGTGGCTCGG-ATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCG
* * * * * * * * * * *
63808078 GATGTGCAGGAGACTCAAGCACCATTGGTTCCTTGGTACTCGGATGTGGGGGAGCCTCTAGCCGC
64 GATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTGGAGGAGCCTCGAGCAGC
* * *
63808143 ATCGACACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCACC
129 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA-G
* * * * * *
63808186 ATCGGTACCTCGCT-GCTCAGATCTGAGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGG
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGGCTCGG
* * * *
63808249 ATGAGC-GGAGCCTCGAGCGGCTTCGGCACCTTGGTGCTGGGATGTGCG-GGAGCCTCGAGCAGC
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTG-GAGGAGCCTCGAGCAGC
** * * *
63808312 ATCAACACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCCAC
129 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CAG
* * * * ** * * * *
63808354 ATCGGAACCTTGGTGGCTCGGATTTGCGGTAGCCTCGAGCAC-TATTTGTATCTTGG-CGCTTGG
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGGCTCGG
* * * * * *
63808417 ATGTGTGGGAGCCTCGAGCACCGTCGGTACCATGGTGGCTCGGATGTACG-GGAGCCTCGAGCAG
65 ATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGT-GCTGGGATGT-GGAGGAGCCTCGAGCAG
* * *** *
63808481 CATCGGCACCCTGGTGGTTC-GATGTGTAAGAGCCTCGAGTAG
128 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAG
* * * * * * * * * * *
63808523 CATCCGTACTTTAGT-GCTGGGATGTGCGGGAGCCTC--CCCACAGCCGACACCTTGGTGGCGCA
1 -ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCA-TCGGCACCTTGGTGGCTCG
* * * * * * ** * *
63808585 GATGCGCGGGAGCCTCGTGCAGCACCGGCACCTCGGTGGCTCGGATGTGCTGGAACCCCGAGCAG
64 GATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGT-GCTGGGATGTGGAGGAGCCTCGAGCAG
* * * * *
63808650 CATCGGCACCTAGGAGGTCGGATGTGCCGGAGCCTCGAGCACC
128 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA-G
** * *
63808693 ATCAACACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC
63808733 TCCATCCGCA
Statistics
Matches: 2678, Mismatches: 645, Indels: 253
0.75 0.18 0.07
Matches are distributed among these distances:
166 1 0.00
167 4 0.00
168 160 0.06
169 509 0.19
170 1692 0.63
171 185 0.07
172 15 0.01
184 35 0.01
185 59 0.02
186 18 0.01
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.21
Consensus pattern (169 bp):
ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGA
TGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTGGAGGAGCCTCGAGCAGCAT
CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAG
Found at i:63806509 original size:722 final size:720
Alignment explanation
Indices: 63805110--63807655 Score: 2902
Period size: 722 Copynumber: 3.5 Consensus size: 720
63805100 AGCACATGAC
* * ** * * * * *
63805110 AGCATCGGCACCTTGGTGGCTCAGATGTATGGGAGCCTCGTGTACCATCGGCACCTTGGTGCTTG
1 AGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGG
* * ** * *
63805175 GATGTGCGGGAGCTTCGA-CCACCATCGGTACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCA
66 GATGTGCGGGAGCCTCGAGCC-GCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCA
* * * * * * **
63805239 GCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCTAGCAGA--ACAGGCACCTTGGTGGCTT
130 GCATCGTCAACTTGGTGC-TGGATGTGCAGGAGCCTCGAGCACATGTCA-G-ACCTTGGT-AATT
** * *
63805302 GGATGTGCGGGACCCTCGAGC-CGCATCGGCACCTTGG-TGGCTCAGATGTGTGGGAGCCTCGAG
191 GGATGTGCGGGAGACTCGAGCTC-CATCGGCACCTTGGCTGGCTCGGATGTGCGGGAGCCTCGAG
* * * * * *
63805365 CACCATCGGTACCTTGGTGTTGGGATGTG-GAGGATCCTCGAGTCA-CATCGGCACCTTGGTGGG
255 CAGCACCGGCACCTTGGTGCTGGGATGTGCG-GGAGCCTCGAG-CAGCATCGGCACCTTGGTGGC
* * * * * * * * * *
63805428 TCGGACGTCCAGGAGACTCGAACAACATCCGCACCTTGGGGCTCGGAGGTTCGGGAGCCTCGAGC
318 TCGGATGTCCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGTAGCCTCGAGC
* * * * * * **
63805493 ACCATAGGC-ACTTTGGTGGCTCGGATGTGCGGGAGCCTCGAGTAGTATCGGCACCTCAGTGCTG
383 ACCAT-CGCTACCTTGGTTGTTCGGATGTGTGGGAGCCTCGAGTAGTATCAGCACCTTGGTGCTG
* * * * * *
63805557 GGATGTGCGGGAGCCTCGAGCAGTATCGGCACCTTGGTGGCCCG-GATGTGCGGGAGCCTCGAAC
447 GGATGTGCGGGAGCCTCGAGCCGCATCAGCACCTTGGT-GACTGAGATGTGCGGGAGCCTCGAGC
** * * * * *
63805621 GGCATAGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATTGGTACCTTGGTGGCTCA
511 ACCATCGGTACCTTGGTGCGGGGATGTGCGGGAGCCTTGAGCCGCATCGGTACCTTGGTGGCTCA
** * * * * ** ** * * * * *
63805686 GATGTGCGGGAGCCTCGAGCAGCATCGGTACC-TTGGTGTTTGGAT-GTCCGGTAGTCTCGAGCC
576 GATGACCTGGAGACTCGAACATCATCGACACCATTGG-ACTCGG-TGGTGCGGGAGCCTCGTGCC
* * * * * * *
63805749 TCATCGGCACCTTGGTTGTTCAGATGTACAGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTTGG
639 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGTACCTTGGTGCTGGG
* *
63805814 ATGTGCGGCACCCTCGAGC
703 ATGTGCGG-AGCCTCGAGT
* * * * * * * * * *
63805833 ACCATTGGCACCATGGTGGCTCAGACGTGCGGAAGCCTCGAGCTGCATCGGTACCTTGGTGCTGG
1 AGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGG
* *
63805898 GATGTACGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGATGCT-CGGGAGCCTCGAGCA
66 GATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGGCTCGGATG-TGCGGGAGCCTCGAGCA
* * * * * * * * ** *
63805962 CCATCGGT-ACCTTGGTGCTGGGATTTGCGGGAGACTCGAGTACTATTGTCA-ACTTTGTTGCTC
130 GCATC-GTCAACTTGGTGCT-GGATGTGCAGGAGCCTCGAGCAC-A-TGTCAGACCTTGGTAATT
* ** * * *
63806025 GGATGTGCGGGAGCCTCGAGCTGTATTGGCACCTTGG-T-GCTTGGATGTGCGGGAGGCTCGAGC
191 GGATGTGCGGGAGACTCGAGCTCCATCGGCACCTTGGCTGGCTCGGATGTGCGGGAGCCTCGAGC
* * * *
63806088 AGCACCGGCACCTTGATGCTGGGATGTGTGGGAGCCTTGAGCCA-CATCGGCACATTGGTGGCTC
256 AGCACCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAG-CAGCATCGGCACCTTGGTGGCTC
* * *
63806152 GGATGTACAGGAGCCTCCAGCACCATCGGGACCTTGGTGCTTGGATGTGCGGTAGCCTCGAGCAC
320 GGATGTCCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGTAGCCTCGAGCAC
*
63806217 CATCGCTACCTTGGTTGTTCGGATGTGTAGGAGCCTCGAGTAGTATCAGCACCTTGGTGCTGGGA
385 CATCGCTACCTTGGTTGTTCGGATGTGTGGGAGCCTCGAGTAGTATCAGCACCTTGGTGCTGGGA
*
63806282 TGTGCGGGAGCCTCGAGCCGCATCAGCACCTTGGTGACTGAGATATGCGGGAGCCTCGAGCACCA
450 TGTGCGGGAGCCTCGAGCCGCATCAGCACCTTGGTGACTGAGATGTGCGGGAGCCTCGAGCACCA
* * *
63806347 TCGGTACCTTGGTGCGGGGATGTGCGGGAACCTTGAGCCGCATCGGTACCTTGGTTGCTGAGATG
515 TCGGTACCTTGGTGCGGGGATGTGCGGGAGCCTTGAGCCGCATCGGTACCTTGGTGGCTCAGATG
63806412 ACCTGGAGACTCGAACATCATCGACACCATTGGACTCGGTGGTGCGGGAGCCTCGTGCACCATCG
580 ACCTGGAGACTCGAACATCATCGACACCATTGGACTCGGTGGTGCGGGAGCCTCGTGC-CCATCG
*
63806477 GCACCTTGGGGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGTACCTTGGTGCTGGGATGTGC
644 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGTACCTTGGTGCTGGGATGTGC
*
63806542 AGTAGCCTCGAGT
709 -GGAGCCTCGAGT
*
63806555 AGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACTTTGGTGCTGG
1 AGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGG
63806620 GATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAG
66 GATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAG
* * * * *
63806685 CATCTTCAACTTGGTGAATGGATGTGCAGTAGCCTCGAGCA-GTATCAGGACCTTGGTAATTGGA
131 CATCGTCAACTTGGTG-CTGGATGTGCAGGAGCCTCGAGCACATGTCA-GACCTTGGTAATTGGA
* * * * * *
63806749 TGTGC-GGAGACTCGAGCACCATCGGTAGCTTGGCTAG-TCGGATGTGCTGGAGCCTGGAGCAGC
194 TGTGCGGGAGACTCGAGCTCCATCGGCACCTTGGCTGGCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * *
63806812 ATCC-GCACCTCGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGCCACCTTGAT-GCTGGGA
259 A-CCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGA
** *
63806875 TGTGTCGGGGAGCCTCGAGCACCATCAGG-ACCTTGGTGCTTGGATGTTCGGTAGCCTCGAGCAC
323 --TGTCCAGGAGCCTCGAGCACCATC-GGCACCTTGGTGCTTGGATGTGCGGTAGCCTCGAGCAC
* * * *
63806939 CATCGGTACCTTGGTTGTTCGGATGTGTGGGAGCCTCGAGTAGTATCAGCACCTTGCTGGTAGGA
385 CATCGCTACCTTGGTTGTTCGGATGTGTGGGAGCCTCGAGTAGTATCAGCACCTTGGTGCTGGGA
* * *
63807004 TGTGCGGGAGCCTCGAGCCGCATCAGCACCTTGGTGGCTGAGATGTGCGGGAGGCTCAAGCACCA
450 TGTGCGGGAGCCTCGAGCCGCATCAGCACCTTGGTGACTGAGATGTGCGGGAGCCTCGAGCACCA
* *
63807069 TCGGTACCTTGGTGCGGGGATGTGGGGGAGCCTTGAGCCACATCGGTACCTTGGTGGCTCAGATG
515 TCGGTACCTTGGTGCGGGGATGTGCGGGAGCCTTGAGCCGCATCGGTACCTTGGTGGCTCAGATG
* * * * * *
63807134 ACCTCGAGACTCAAACATCATCAACACCATAGGACTCGGAGGTGCGGGAGCCTTGAT-CGCCATC
580 ACCTGGAGACTCGAACATCATCGACACCATTGGACTCGGTGGTGCGGGAGCCTCG-TGC-CCATC
* * * *
63807198 GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAATACCGGCACCTTGGTGCTGGGATATG
643 GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGTACCTTGGTGCTGGGATGTG
63807263 CAGGAGCCTCGAGT
708 C-GGAGCCTCGAGT
63807277 AGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGG
1 AGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGG
* * *
63807342 GATATGCAGGAGCCTCGAGCCGCATCAACACCTTGGTGGCTCGGATGTG-GGGAGCCTCGAGCAG
66 GATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAG
* * *
63807406 CATCTTCAACTTGGTGCATGGATGCGCAGTAGCCTCGAGCAGCA--TCAGGACCTTGGTAATTGG
131 CATCGTCAACTTGGTGC-TGGATGTGCAGGAGCCTCGAGCA-CATGTCA-GACCTTGGTAATTGG
*
63807469 ATGTGCGGGAGACTCGAG-TACCATCGGCACCTTGGCTGGC-CGGATGTGCTGGAGCCTCGAGCA
193 ATGTGCGGGAGACTCGAGCT-CCATCGGCACCTTGGCTGGCTCGGATGTGCGGGAGCCTCGAGCA
* * * * *
63807532 GCATCTGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGTATCGGCACCTTGGTTGTTCGG
257 GCACCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGG
* * *
63807597 ATGTCCAAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCAGG-AGCCTCGA
322 ATGTCCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGC-GGTAGCCTCGA
63807656 CCCGTATCGN
Statistics
Matches: 1566, Mismatches: 218, Indels: 80
0.84 0.12 0.04
Matches are distributed among these distances:
719 4 0.00
720 31 0.02
721 214 0.14
722 1115 0.71
723 189 0.12
724 11 0.01
727 2 0.00
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.22
Consensus pattern (720 bp):
AGCATCGGCACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGG
GATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAG
CATCGTCAACTTGGTGCTGGATGTGCAGGAGCCTCGAGCACATGTCAGACCTTGGTAATTGGATG
TGCGGGAGACTCGAGCTCCATCGGCACCTTGGCTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAC
CGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGT
CCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGTAGCCTCGAGCACCATCGC
TACCTTGGTTGTTCGGATGTGTGGGAGCCTCGAGTAGTATCAGCACCTTGGTGCTGGGATGTGCG
GGAGCCTCGAGCCGCATCAGCACCTTGGTGACTGAGATGTGCGGGAGCCTCGAGCACCATCGGTA
CCTTGGTGCGGGGATGTGCGGGAGCCTTGAGCCGCATCGGTACCTTGGTGGCTCAGATGACCTGG
AGACTCGAACATCATCGACACCATTGGACTCGGTGGTGCGGGAGCCTCGTGCCCATCGGCACCTT
GGTGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGTACCTTGGTGCTGGGATGTGCGGAGCCT
CGAGT
Found at i:63809282 original size:42 final size:42
Alignment explanation
Indices: 63809206--63809541 Score: 246
Period size: 42 Copynumber: 7.9 Consensus size: 42
63809196 AGAGCCTCAA
* * *
63809206 GCACCTTGGTGGCTCGGATATGCGGGAGCGTCGAGCACCATCG
1 GCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCG
63809249 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGC-CGCATCG
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC-CATCG
* * * * * *
63809291 ACACCTTAGTGGCTCGGGTGTGCGGGAGCCTCGAGCAGCATCT
1 GCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCG
* * * * * * * * *
63809334 TCAACTTGGTGCATAGATGTACAGTAGCCTCAAGCAGCATCAG
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATC-G
** * * *
63809377 G-ACCTTGGTAATTGGATGTGCGGTAGACTCGAGCACCATCA
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
* * * * * * *
63809418 GCAGCTTGGCTGGTCGGATGTGCTGGAGCCTGGAGCAGCATCC
1 GCACCTTGG-TGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
* * * **
63809461 GCCCCTCGGTGCTGGGATGTGCGGGAGCCTCGAGCAGTATC-
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
* * * *
63809502 GCACCTTGATGCCATGGATGAGCGGGAGCCTTGAGCACCA
1 GCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAGCACCA
63809542 AAGCTAAAGT
Statistics
Matches: 226, Mismatches: 60, Indels: 15
0.75 0.20 0.05
Matches are distributed among these distances:
41 10 0.04
42 142 0.63
43 74 0.33
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (42 bp):
GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:63809382 original size:85 final size:85
Alignment explanation
Indices: 63809207--63809374 Score: 201
Period size: 85 Copynumber: 2.0 Consensus size: 85
63809197 GAGCCTCAAG
* * * * * * *
63809207 CACCTTGGTGGCTCGGATATGCGGGAGCGTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCG
1 CACCTTAGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGCAACTTGGTGCATAGATGTACA
* *
63809272 GGAGCCTCGAGCCGCATCGA
66 GGAGCCTCAAGCAGCATCGA
* * * **
63809292 CACCTTAGTGGCTCGGGTGTGCGGGAGCCTCGAGCAGCATCTTCAACTTGGTGCATAGATGTACA
1 CACCTTAGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGCAACTTGGTGCATAGATGTACA
*
63809357 GTAGCCTCAAGCAGCATC
66 GGAGCCTCAAGCAGCATC
63809375 AGGACCTTGG
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
85 68 1.00
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.21
Consensus pattern (85 bp):
CACCTTAGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGCAACTTGGTGCATAGATGTACA
GGAGCCTCAAGCAGCATCGA
Found at i:63810154 original size:42 final size:42
Alignment explanation
Indices: 63810060--63811879 Score: 1296
Period size: 42 Copynumber: 42.4 Consensus size: 42
63810050 NNNNNNGGGG
* ** * * *
63810060 GGGAGCCCCGAGCATTATCCGCACCTTGGTTGTTCGGATGTCC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGC
** *
63810103 AAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTAGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
** * * * *
63810145 ACGAGCCTCGAGCCGTATCGGCACCTTGGGGGCTCGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTCGGATGTGC
** * *
63810188 GGGAGCCTCGAGCAGCATCTTCAACTTGGTGCAT-GGATGCGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGATGTGC
* * * ** *
63810230 AGTAGCCTCGAGCAGCATTAGG-ACCTTGGTAATTGGATGTGC
1 GGGAGCCTCGAGCAGCA-TCGGCACCTTGGTGCTCGGATGTGC
* * * **
63810272 GGGAGACTCGAGCACCATCGGTACCTTACCTGGC-CGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTT-GGT-GCTCGGATGTGC
* * * * *
63810315 TGGAGCCTAGAGCAGCATCCGCACCTTGGTGCTGGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * * *
63810357 AGGAGCCTCGAGCCGTATCGGCACCTTGGGGGCTCGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTCGGATGTGC
* * *
63810400 GGGAGCCT-TAGCAGCATCGGAACCTTGGTCCT-GGTATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-ATGTGC
* * * *
63810441 GGGAGCCTCGAGCCGCATCGGCACCTTGGTGTCTCGAATGCGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGC
* * * * * *
63810484 GGAAGCCTCGAGCA-CTATCGGTACCTTGGTGATGGGATCTGT
1 GGGAGCCTCGAGCAGC-ATCGGCACCTTGGTGCTCGGATGTGC
* * * * * * *
63810526 GGGAGCCTCAAGCACCATCGGTAACTTAGTTGATTGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTCGGATGTGC
* * * * *
63810569 GAGAGCCCCGAGTAGCATCGGTACCTTGGTGCTTGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* *
63810611 GGGAGCCTCGAGCAACATCGGCACCTTAGTGGCTCGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* *
63810654 GGGAGCCTCGAGCAGCATCGACACCTTGGTGCTGGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * *
63810696 AGGAGCCGCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * * * * ** * *
63810739 AGGAGACTCAAGCACCATTGGTTCCTTGGTACTCGGATGTGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* *
63810781 GGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * * * * *
63810824 GGGAGACTCGAGCACCATCGGTAGCTTGGCTGGTCGGCTGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGC
* * * * *
63810867 TGGAGCCTGGAGCAGCATCCGCACCTCGGTGCTGGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * *
63810909 GGGAGCCTCGAGCAGCATCGCCACCTTGATGCTGGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * **
63810951 GGGAGCGTCGAGCCA-CATCGGCACCTTGATGGCTCGGGTGTAT
1 GGGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * *
63810994 GGGAGCGTCGAGCACCATCAGG-ACCTTGGTGCTTGGATGTGC
1 GGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGGATGTGC
* * *
63811036 GGGAGCCTCG-GCCACCATCGGCAACCTTGGTGGCCCGGATATGC
1 GGGAGCCTCGAG-CAGCATCGGC-ACCTTGGT-GCTCGGATGTGC
* *
63811080 GGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* ** *
63811122 GGGAGCCTCGAGCCGCATCTTCAACTTGGTGCAT-GGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGATGTGC
* * ** *
63811164 AGTAGCCTCGAGCAGCATCAGG-ACCTTGGTAATTGGATGTGC
1 GGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGGATGTGC
* * * * *
63811206 GGTAGACTCGAGCACCATCGGCAGCTTGGCTGGTCGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGC
* * * * * *
63811249 TGGAGCCTGGAGCAGCATCCGCACCTCGGTACTGGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* ** *
63811291 GGGAGCCTCTCAGATGTGCGGGAGGC-TCAAGCACCATCGGTACCTTGGTGCGGGGATGTGG
1 GGGAG-C-CTC-GA---GC---A-GCATC-GGCA---------CCTTGGTGCTCGGATGTGC
* * * * **
63811352 GGGAGCCTTGAGCCGCATCGGTACCTTGGTGGCTCAGATGACC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * * * * ** * *
63811395 TGGAGACTCAAACATCATCAACACCATGG-GACTCGGAGGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGC
* *
63811437 GGGAGCCTTGAGCACCATCGGCACCTTGGTGGCTCGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * * * *
63811480 GGGAGCCTCGAGCAACACCGGCACCTTAGTGCTGGGATATGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * *
63811522 AGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* * *
63811565 GGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATATGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * * *
63811607 GGGAGCCTCGAGCCGCATCGACACCTTGGTCACTTGGATGTGT
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGC
* ** * *
63811650 GGGAGCCTCGAGCAACATCTTCAACTTGGTGCAT-GGATGCGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGATGTGC
* * ** *
63811692 AGTAGCCTCGAGCAGCATCAGG-ACCTTGGTAATTGGATGTGC
1 GGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGGATGTGC
* * * *
63811734 GGGAGACTCGAGTACCATCGGCACCTTGGCTAGC-CGGATATGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-T-GCTCGGATGTGC
* * * * *
63811777 TGGAGCCTCGGGCAGCATCCGCACCTTGGTACTTGGATGTGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
* * * *
63811819 GGGAGCCTCGAGCAGTATCCGCACCTTGGTTGTTCGGATGTCC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGC
**
63811862 AAGAGCCTCGAGCAGCAT
1 GGGAGCCTCGAGCAGCAT
63811880 NAGCGTATAT
Statistics
Matches: 1381, Mismatches: 327, Indels: 138
0.75 0.18 0.07
Matches are distributed among these distances:
40 2 0.00
41 34 0.02
42 691 0.50
43 574 0.42
44 34 0.02
45 3 0.00
48 2 0.00
51 7 0.01
52 7 0.01
55 2 0.00
58 2 0.00
59 2 0.00
60 1 0.00
61 20 0.01
ACGTcount: A:0.18, C:0.26, G:0.35, T:0.21
Consensus pattern (42 bp):
GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC
Found at i:63810205 original size:85 final size:84
Alignment explanation
Indices: 63810061--63811879 Score: 1264
Period size: 85 Copynumber: 21.2 Consensus size: 84
63810051 NNNNNGGGGG
* ** * * **
63810061 GGAGCCCCGAGCATTATCCGCACCTTGGTTG-TTCGGATGTCCAAGAGCCTCGAGCAGCATCGGC
1 GGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTT-GGATGTGCGGGAGCCTCGAGCAGCATCGGC
*
63810125 ACCTTGGTGCTAGGATGTGCA
64 ACCTTGGTGCTCGGATGTGCA
* * * * * * **
63810146 CGAGCCTCGAGCCGTATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTCGAGCAGCATCTTCA
1 GGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* *
63810211 ACTTGGTGCAT-GGATGCGCA
65 CCTTGGTGC-TCGGATGTGCA
* * ** * * *
63810231 GTAGCCTCGAGCAGCATTAGG-ACCTTGGTAATTGGATGTGCGGGAGACTCGAGCACCATCGGTA
1 GGAGCCTCGAGCAGCA-TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
** *
63810295 CCTTACCTGGC-CGGATGTGCT
65 CCTT-GGT-GCTCGGATGTGCA
* * * ** * *
63810316 GGAGCCTAGAGCAGCATCCGCACCTTGGTGCTGGGATGTGTAGGAGCCTCGAGCCGTATCGGCAC
1 GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* **
63810381 CTTGGGGGCTCGGATGTGTG
66 CTT-GGTGCTCGGATGTGCA
* * * *
63810401 GGAGCCT-TAGCAGCATCGGAACCTTGGT-CCTGGTATGTGCGGGAGCCTCGAGCCGCATCGGCA
1 GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGG-ATGTGCGGGAGCCTCGAGCAGCATCGGCA
* * *
63810464 CCTTGGTGTCTCGAATGCG-T
65 CCTTGGTG-CTCGGATGTGCA
* * * * * * * *
63810484 GGAAGCCTCGAGCA-CTATCGGTACCTTGGTGATGGGATCTGTGGGAGCCTCAAGCACCATCGGT
1 GG-AGCCTCGAGCAGC-ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGC
* * * *
63810548 AACTTAGTTGATTGGATGTGC-
64 ACCTT-GGTGCTCGGATGTGCA
* * * *
63810569 GAGAGCCCCGAGTAGCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAACATCGGCA
1 G-GAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* *
63810634 CCTTAGTGGCTCGGATGTGCG
65 CCTTGGT-GCTCGGATGTGCA
* * * * *
63810655 GGAGCCTCGAGCAGCATCGACACCTTGGTGCTGGGATGTGCAGGAGCCGCGAGCCGCATCGGCAC
1 GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
63810720 CTTGGTGGCTCAGATGTGCA
66 CTTGGT-GCTCGGATGTGCA
* * * * ** * * * * *
63810740 GGAGACTCAAGCACCATTGGTTCCTTGGTACTCGGATGTGGGGGAGCCTCTAGCCGCATCGGCAC
1 GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
63810805 CTTGGTGGCTCGGATGTGCG
66 CTTGGT-GCTCGGATGTGCA
* * * * * * * * * *
63810825 GGAGACTCGAGCACCATCGGTAGCTTGGCTGGTCGGCTGTGCTGGAGCCTGGAGCAGCATCCGCA
1 GGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* * *
63810890 CCTCGGTGCTGGGATGTGCG
65 CCTTGGTGCTCGGATGTGCA
* * * * *
63810910 GGAGCCTCGAGCAGCATCGCCACCTTGATGCTGGGATGTGTGGGAGCGTCGAGCCA-CATCGGCA
1 GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CAGCATCGGCA
* * ***
63810974 CCTTGATGGCTCGGGTGTATG
65 CCTTGGT-GCTCGGATGTGCA
* * *
63810995 GGAGCGTCGAGCACCATCAGG-ACCTTGGTGCTTGGATGTGCGGGAGCCTCG-GCCACCATCGGC
1 GGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CAGCATCGGC
* * *
63811058 AACCTTGGTGGCCCGGATATGCG
64 -ACCTTGGT-GCTCGGATGTGCA
* * * ** *
63811081 GGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCTTCAA
1 GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
63811146 CTTGGTGCAT-GGATGTGCA
66 CTTGGTGC-TCGGATGTGCA
* ** * * *
63811165 GTAGCCTCGAGCAGCATCAGG-ACCTTGGTAATTGGATGTGCGGTAGACTCGAGCACCATCGGCA
1 GGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* * *
63811229 GCTTGGCTGGTCGGATGTGCT
65 CCTTGG-TGCTCGGATGTGCA
* * * * *
63811250 GGAGCCTGGAGCAGCATCCGCACCTCGGTACTGGGATGTGCGGGAGCCTCTCAGATGTGCGGGAG
1 GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAG-C-CTC-GA---GC---A-
* ** **
63811315 GC-TCAAGCACCATCGGTACCTTGGTGCGGGGATGTGGG
56 GCATC-GGCA---------CCTTGGTGCTCGGATGTGCA
* * * ** ** * * * * * **
63811353 GGAGCCTTGAGCCGCATCGGTACCTTGGTGGCTCAGATGACCTGGAGACTCAAACATCATCAACA
1 GGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* * *
63811418 CCATGG-GACTCGGAGGTGCG
65 CCTTGGTG-CTCGGATGTGCA
* * * * *
63811438 GGAGCCTTGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACACCGGCA
1 GGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* * *
63811503 CCTTAGTGCTGGGATATGCA
65 CCTTGGTGCTCGGATGTGCA
** * *
63811523 GGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAATGTGCGGGAGCCTCGAGCAGCATAGGCA
1 GGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* * *
63811588 CCTTGGTGCTGGGATATGCG
65 CCTTGGTGCTCGGATGTGCA
* * * * * **
63811608 GGAGCCTCGAGCCGCATCGACACCTTGGTCACTTGGATGTGTGGGAGCCTCGAGCAACATCTTCA
1 GGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* *
63811673 ACTTGGTGCAT-GGATGCGCA
65 CCTTGGTGC-TCGGATGTGCA
* ** * * *
63811693 GTAGCCTCGAGCAGCATCAGG-ACCTTGGTAATTGGATGTGCGGGAGACTCGAGTACCATCGGCA
1 GGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* *
63811757 CCTTGGCTAGC-CGGATATGCT
65 CCTTGG-T-GCTCGGATGTGCA
* * * * *
63811778 GGAGCCTCGGGCAGCATCCGCACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCAGTATCCGCAC
1 GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
63811843 CTTGGTTGTTCGGATGTCCA
66 CTTGG-TGCTCGGATGTGCA
*
63811863 AGAGCCTCGAGCAGCAT
1 GGAGCCTCGAGCAGCAT
63811880 NAGCGTATAT
Statistics
Matches: 1358, Mismatches: 311, Indels: 130
0.75 0.17 0.07
Matches are distributed among these distances:
83 8 0.01
84 234 0.17
85 918 0.68
86 122 0.09
87 4 0.00
88 2 0.00
91 2 0.00
94 7 0.01
95 7 0.01
98 1 0.00
101 1 0.00
102 3 0.00
103 33 0.02
104 16 0.01
ACGTcount: A:0.18, C:0.26, G:0.35, T:0.21
Consensus pattern (84 bp):
GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
CTTGGTGCTCGGATGTGCA
Found at i:63810292 original size:127 final size:127
Alignment explanation
Indices: 63810060--63811299 Score: 887
Period size: 127 Copynumber: 9.7 Consensus size: 127
63810050 NNNNNNGGGG
* ** * * * *
63810060 GGGAGCCCCGAGCATTATCCGCACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGCA-TCGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCAGGAGCCTCGAGCAGCATTCGG
* ** * * *
63810124 CACCTTGGTGCTAGGATGTGCACGAGCCTCGAGC-CGTATCGGCACCTTGGGGGCTCGGATGTGT
65 CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTT-GTGGCTCGGATGTGC
** * * * *
63810188 GGGAGCCTCGAGCAGCATCTTCAACTTGGTGCAT-GGATGCGCAGTAGCCTCGAGCAGCATTAGG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGATGTGCAGGAGCCTCGAGCAGCATTCGG
** * * * *
63810252 -ACCTTGGTAATTGGATGTGCGGGAGACTCGAGCACCATCGGTACCTTACCTGGC-CGGATGTGC
65 CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTT--GTGGCTCGGATGTGC
* * * * * * *
63810315 TGGAGCCTAGAGCAGCATCCGCACCTTGGTGCTGGGATGTGTAGGAGCCTCGAGCCGTA-TCGGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCAGCATTCGGC
* * * * * *
63810379 ACCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAGCATCGGAACCTTG-GTC-CTGGTATGTGC
66 ACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGTGGCTC-GG-ATGTGC
* * * *
63810441 GGGAGCCTCGAGCCGCATCGGCACCTTGGTGTCTCGAATGCG-TGGAAGCCTCGAGCA-C-TATC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCAGG-AGCCTCGAGCAGCAT-TC
* * * * * * * * * * *
63810503 GGTACCTTGGTGATGGGATCTGTGGGAGCCTCAAGCACCATCGGTAACTTAGTTGATTGGATGTG
63 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTT-GTGGCTCGGATGTG
63810568 C
127 C
* * * * * * *
63810569 GAGAGCCCCGAGTAGCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAACA-TCGGC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCAGCATTCGGC
* * * *
63810633 ACCTTAGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTG-GTGCTGGGATGTGC
66 ACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGTG-GCTCGGATGTGC
* * * * * * *
63810696 AGGAGCCGCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGACTCAAGCACCATT-GG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCAGCATTCGG
** * * *
63810760 TTCCTTGGTACTCGGATGTGGGGGAGCCTCTAGC-CGCATCGGCACCTTGGTGGCTCGGATGTGC
65 CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTT-GTGGCTCGGATGTGC
* * * * * * * * *
63810824 GGGAGACTCGAGCACCATCGGTAGCTTGGCTGGTCGGCTGTGCTGGAGCCTGGAGCAGCA-TCCG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCAGGAGCCTCGAGCAGCATTCGG
* * * * * *
63810888 CACCTCGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGCCACCTTGAT-GCTGGGATGTGT
65 CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTG-TGGCTCGGATGTGC
* * * *** * *
63810951 GGGAGCGTCGAGCCA-CATCGGCACCTTGATGGCTCGGGTGTATGGGAGCGTCGAGCACCA-TCA
1 GGGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCAGCATTC-
* * *
63811014 GG-ACCTTGGTGCTTGGATGTGCGGGAGCCTCG-GCCACCATCGGCAACCTTGGTGGCCCGGATA
63 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTT-GTGGCTCGGATG
63811077 TGC
125 TGC
* * * * **
63811080 GGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCA-TCTTC
1 GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCAGCATTCGGC
* * * * ** *
63811144 AACTTGGTGCAT-GGATGTGCAGTAGCCTCGAGCAGCATCAGG-ACCTTG-GTAATTGGATGTGC
66 ACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCACCATC-GGCACCTTGTG-GCTCGGATGTGC
* * * * * * * *
63811206 GGTAGACTCGAGCACCATCGGCAGCTTGGCTGGTCGGATGTGCTGGAGCCTGGAGCAGCA-TCCG
1 GGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCAGGAGCCTCGAGCAGCATTCGG
* * *
63811270 CACCTCGGTACTGGGATGTGCGGGAGCCTC
65 CACCTTGGTGCTCGGATGTGCGGGAGCCTC
63811300 TCAGATGTGC
Statistics
Matches: 866, Mismatches: 200, Indels: 93
0.75 0.17 0.08
Matches are distributed among these distances:
124 3 0.00
125 3 0.00
126 93 0.11
127 419 0.48
128 306 0.35
129 42 0.05
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.21
Consensus pattern (127 bp):
GGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCAGCATTCGGC
ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGTGGCTCGGATGTGC
Found at i:63811782 original size:127 final size:125
Alignment explanation
Indices: 63811433--63811848 Score: 360
Period size: 127 Copynumber: 3.3 Consensus size: 125
63811423 GGACTCGGAG
* * ** * *
63811433 GTGCGGGAGCCTTGAGCACCATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACA
1 GTGCGGGAGCCTCGAGCAGCATCAGG-ACCTTGGT-AATGGGATGTGCGGGAGCCTCGAG-ACCA
* * * ** *
63811497 CCGGCACCTTAGTGCT-G-GGATATGCAGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAA
63 TCGGCACCTT-G-GCTAGCGGATATGCTGGAGCCTCGAGCAGCATCCGCACCTTGGT-GCATGGA
63811560 T
125 T
** * *
63811561 GTGCGGGAGCCTCGAGCAGCAT-AGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCCGCAT
1 GTGCGGGAGCCTCGAGCAGCATCAGG-ACCTTGGTAATGGGATGTGCGGGAGCCTCGAGAC-CAT
* * * ** *
63811625 CGACACCTTGG-TCA-CTTGGATGTG-TGGGAGCCTCGAGCAACATCTTCAACTTGGTGCATGGA
64 CGGCACCTTGGCT-AGC--GGATATGCT-GGAGCCTCGAGCAGCATCCGCACCTTGGTGCATGGA
63811687 T
125 T
* * * * *
63811688 GCGCAGTAGCCTCGAGCAGCATCAGGACCTTGGTAATTGGATGTGCGGGAGACTCGAGTACCATC
1 GTGCGGGAGCCTCGAGCAGCATCAGGACCTTGGTAATGGGATGTGCGGGAGCCTCGAG-ACCATC
* * *
63811753 GGCACCTTGGCTAGCCGGATATGCTGGAGCCTCGGGCAGCATCCGCACCTTGGTACTTGGAT
65 GGCACCTTGGCTAG-CGGATATGCTGGAGCCTCGAGCAGCATCCGCACCTTGGTGCATGGAT
* * *
63811815 GTGCGGGAGCCTCGAGCAGTATCCGCACCTTGGT
1 GTGCGGGAGCCTCGAGCAGCATCAGGACCTTGGT
63811849 TGTTCGGATG
Statistics
Matches: 233, Mismatches: 41, Indels: 29
0.77 0.14 0.10
Matches are distributed among these distances:
124 1 0.00
125 1 0.00
126 1 0.00
127 161 0.69
128 68 0.29
129 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.34, T:0.20
Consensus pattern (125 bp):
GTGCGGGAGCCTCGAGCAGCATCAGGACCTTGGTAATGGGATGTGCGGGAGCCTCGAGACCATCG
GCACCTTGGCTAGCGGATATGCTGGAGCCTCGAGCAGCATCCGCACCTTGGTGCATGGAT
Found at i:63822118 original size:33 final size:33
Alignment explanation
Indices: 63822076--63822140 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
63822066 ATGAATGGAT
*
63822076 TAACGAGATTCCCACTGTCCCTGTCTACTATCC
1 TAACGAGATTCCCACTGTCCCTATCTACTATCC
63822109 TAACGAGATTCCCACTGTCCCTATCTACTATC
1 TAACGAGATTCCCACTGTCCCTATCTACTATC
63822141 TAGCGAAACC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.23, C:0.35, G:0.11, T:0.31
Consensus pattern (33 bp):
TAACGAGATTCCCACTGTCCCTATCTACTATCC
Found at i:63823925 original size:7 final size:7
Alignment explanation
Indices: 63823905--63823954 Score: 93
Period size: 7 Copynumber: 7.3 Consensus size: 7
63823895 AAGTAAGCAT
63823905 TATCAAA
1 TATCAAA
63823912 T-TCAAA
1 TATCAAA
63823918 TATCAAA
1 TATCAAA
63823925 TATCAAA
1 TATCAAA
63823932 TATCAAA
1 TATCAAA
63823939 TATCAAA
1 TATCAAA
63823946 TATCAAA
1 TATCAAA
63823953 TA
1 TA
63823955 ATAATAATTG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 6 0.14
7 36 0.86
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (7 bp):
TATCAAA
Found at i:63824527 original size:20 final size:20
Alignment explanation
Indices: 63824502--63824544 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
63824492 TATGGCTTAA
63824502 CAAGAATTCTCTAGTTTTTC
1 CAAGAATTCTCTAGTTTTTC
63824522 CAAGAATTCTCTAGTTTTTC
1 CAAGAATTCTCTAGTTTTTC
63824542 CAA
1 CAA
63824545 AGGCTCAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (20 bp):
CAAGAATTCTCTAGTTTTTC
Found at i:63831362 original size:42 final size:41
Alignment explanation
Indices: 63831173--63831367 Score: 151
Period size: 42 Copynumber: 4.6 Consensus size: 41
63831163 CGGTAGCATA
* *
63831173 GGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCACCTT
1 GGCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-T
** * * ** * *
63831215 GGTACTAGGAT-GTACGGGAGCCTCGAACACCACCGACAACCT
1 GGCCCTCGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCT
* * * *
63831257 AGGCCCTCGGTCGTGCAGGAGCCCCGGGCACCATCGGCATACA
1 -GGCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCT
* *
63831300 GGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCT
1 GGCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
**
63831341 GTGTGCTCGGATC-TGCGGGAGCCTCGG
1 G-GCCCTCGG-TCGTGCGGGAGCCTCGG
63831368 TGCTTGGATG
Statistics
Matches: 117, Mismatches: 29, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
41 2 0.02
42 83 0.71
43 32 0.27
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (41 bp):
GGCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
Found at i:63831526 original size:85 final size:85
Alignment explanation
Indices: 63831393--63837564 Score: 3028
Period size: 85 Copynumber: 72.6 Consensus size: 85
63831383 AAGCGACGGG
* ** * * * * *
63831393 CACCATCGTCAAAATAGGCTCTTGGTCGTGTGAGACCCTCGGCCACCATCGACACCTAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
**
63831458 ATATGTGCAGGAGCCTCAGA
66 GGATGTGCAGGAGCCTCAGA
** * * * *
63831478 CACTGTCGAG-AACCTAGGCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCT
1 CACCATCG-GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* *
63831542 TGGATGTGC-GAGAACCACAGA
65 TGGATGTGCAG-GAGCCTCAGA
* * * * * *
63831563 CACCAACGACAACCTAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGTACCTAGGCGCTC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* *
63831628 GGATGTGCGGGAGCCCCAGA
66 GGATGTGCAGGAGCCTCAGA
* * * * * *
63831648 CACCATCGGCAAACTAAGTCCTTGGTCATGCGAGAGCCTCGGGCGCTATCGGCACCTCA-GTGCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-AGGTGCT
* * ** *
63831712 TCGATGTGCGGGAGCCTTGGG
65 TGGATGTGCAGGAGCCTCAGA
* * * * * *
63831733 CACCATCGGCAACCTAGGCTCTTGGTCGTGCGTGAGCCTCGGGCACCATCGGTAGCTGGGTGCTC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* *
63831798 GGATGTGCAGAAGACTCAGA
66 GGATGTGCAGGAGCCTCAGA
* * * * * * **
63831818 CACCATCGGCAAACAAGGCCCTTGGTCTTGCGGGAGACTCGGGCATCATCGGCTACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
**
63831883 TGG-TCGTGCAAAAGCCTC-GA
65 TGGAT-GTGCAGGAGCCTCAGA
* *** ** * *
63831903 GCACCACCGGC-ACCT-GTGTGTTTGGAT-GCACG-GAGCCTCGGACACCATCGGCAAACTAGG-
1 -CACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGT
* * * * *
63831963 CCTTCGG-TCTTGCGGGAGCCTCGGG
62 GCTT-GGAT-GTGCAGGAGCCTCAGA
* * ** * * * * ** **
63831988 CACCATCGG-TACCTCGGTGCTTCGACGTGGGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* * *
63832052 TGG-TCGTACTA-GAGCCTCGGG
65 TGGAT-GTGC-AGGAGCCTCAGA
* ** * * * * * **
63832073 CACCATCAGC-ACCTAGGTACTTCGAT-GTGCGGGAGCCTCGGACACCATCAGCAAACTAGGCCC
1 CACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* * * ** *
63832136 GTGG-TCTTGCGGGAGCCTTGGG
64 TTGGAT-GTGCAGGAGCCTCAGA
* * * * * * ** * **
63832158 CACCATAGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGTAAAATAAGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTAGGTGCT
*
63832223 TGG-TCGTGC-GAGAGCCTCAGC
65 TGGAT-GTGCAG-GAGCCTCAGA
** * * * * * **
63832244 CACCATCGGC--CTCTAGGTGCTTGGAT-GTGCGGGAGCCTTGGACACCATTGGCAGACTAGGCC
1 CACCATCGGCAAC-CTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCA-CCTAGGTG
* * ** *
63832306 CTTGG-TCCTGCTGGAGCCTTGGG
63 CTTGGAT-GTGCAGGAGCCTCAGA
* ** ** * * *
63832329 CACCATCAGCAAAATAGGCCCTTGGTTTTGCTAGAGCCTCGGGCACCATCGACACCTAGGAGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* *
63832394 GGATGTACGGGAGCCTCAGA
66 GGATGTGCAGGAGCCTCAGA
* * * * * * * ** **
63832414 CACCAGCGGCAAACTAGGCCCGTGGTCTTGTGGGAGCCTCAGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* *
63832479 TGG-TCGTACTA-GAGCCTCGGA
65 TGGAT-GTGC-AGGAGCCTCAGA
** * * * * **
63832500 CACCATCGGC-ACCTAGGTGCTTCGAT-GTGCGGGAGCCTCGGACACCATCAGCAACCTAGGCCC
1 CACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* * * * *
63832563 GTGG-TCTTGCGGGAGCCTCGGG
64 TTGGAT-GTGCAGGAGCCTCAGA
* * ** * * * *
63832585 CACCATTGGTAAAATAAGCCCTTGGTCGTGCGAGAGCCTCAGCCACCATCGGCCCCTAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* * *
63832650 GGATGTGCGGGAGCCCCGGA
66 GGATGTGCAGGAGCCTCAGA
* * * * * ** * **
63832670 CACCATTGGCAAACTAGGCCCTTGGTCCTGCGGGAGCCTCGGGCACCATCAGCAAAATGGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* *
63832735 TGGTTGTGCTA-GAGCCTCAGG
65 TGGATGTGC-AGGAGCCTCAGA
* ** * * * * *
63832756 CACCATCGG-TACCTAGGAGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGCACAT-GTGTGC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAG-GTGC
* * *
63832818 TCGGATGTGCCGGAGCCTCAGG
64 TTGGATGTGCAGGAGCCTCAGA
* * * ** * * * ** **
63832840 GATCATCGGC-ACCTTGGTGCTATGAT-GTGTCG-GAGCCTCAGACACTGTCGGCAACCTAGGCC
1 CACCATCGGCAACCTAGGCCCT-TGGTCGTG-CGAGAGCCTCGGGCACCATCGGC-ACCTAGGTG
* * * *
63832902 CTTGG-TCATACGGGAGCCTC-GTG
63 CTTGGAT-GTGCAGGAGCCTCAG-A
* * ** ** * * * * **
63832925 CACCACCGAC-ACCTTCGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCAGCAACCTAGGCCC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* * *
63832988 TTGGACGTAC-GAGAGCCTCAGG
64 TTGGATGTGCAG-GAGCCTCAGA
* * * * * * ** * **
63833010 CACCATCGACAAACTAAGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGTAAAATTGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTAGGTGCT
63833075 TGG-TCGTGC-GAGAGCCTC-GA
65 TGGAT-GTGCAG-GAGCCTCAGA
** * * * *
63833095 CCACCATCGGC-ACCTAGGTGCTTGGAT-GTGC-AGGAGCCACGGACACCATCGGCAAACTAGGC
1 -CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAGCCTCGGGCACCATCGGC-ACCTAGGT
* * * * *
63833157 CCTTGG-TCTTGCGGGAGCCTCGGG
62 GCTTGGAT-GTGCAGGAGCCTCAGA
* * * * *
63833181 CACCATTGGCAACCTAGACCCTTGGTCGTGCTAGAGCCTCGGGCACTATCGGCACCAAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* *
63833246 GGATGTGCGGGAGCCTCGGA
66 GGATGTGCAGGAGCCTCAGA
* * * * * * **
63833266 CACCATCGACAAACTAGGGCTTTGGTCTTGCG-GAGCCTCGGGCACTATCGGCTACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* * ** *
63833330 AGG-TCGTGC-GAAAGCCTTGGG
65 TGGAT-GTGCAG-GAGCCTCAGA
* * * * * * * * ** *
63833351 CACCATCGG-TACAT-GTGCGCTCGGAT-GTCCGGGAGCCTCAGGCACCATCGACAAAATAGG-C
1 CACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTG
* * *
63833412 CATTGGTTGTGCTA-GAGCCTCGGG
63 C-TTGGATGTGC-AGGAGCCTCAGA
* * * * * * * **
63833436 CACCATCGGC-ACCTAGGAGCTTTGATGCGTG-G-GAGCCTCAGACACCATCGACAAACTAGGCA
1 CACCATCGGCAACCTAGG-CCCTTGGT-CGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTG
* * * * * *
63833498 CGTGG-TCTTGCGGGAGTCTCGGG
63 CTTGGAT-GTGCAGGAGCCTCAGA
** * * * *
63833521 CACCATCGGCAGA--T-GTGTGCTCGGAT-GTGCGGGAGCCTCAGGCACCATCGGCACCTTGGTG
1 CACCATCGGCA-ACCTAG-GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTG
*
63833582 CTAT-GATGTGCCGGAGCCTCAGA
63 CT-TGGATGTGCAGGAGCCTCAGA
** * * * * **
63833605 CACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGTGCACCATCGACACCTTCGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* *
63833670 GGATGTGC-GGAAACCTCGGA
66 GGATGTGCAGG-AGCCTCAGA
* ** * *
63833690 CACCATCGGCAACCTAGGCCCTTTGTCGTATGAGAGCCTCGGGCACCATCGGCAAACTAAGG-CC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCT-AGGTGC
* * *
63833754 TTGG-TCATGC-GGAAGCCTCGGG
64 TTGGAT-GTGCAGG-AGCCTCAGA
** ** * * *
63833776 CACCATCAGTAAAAATTGGCCCTTGGTCGTGTGAGAGCCTCGGCCACCATCGGCACCTAGGTGCT
1 CACCATC-GGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* *
63833841 TGGATGTGCAGGAGCCACGGA
65 TGGATGTGCAGGAGCCTCAGA
* * * * *
63833862 CACCATCGACAAACC-AGGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATCGGCATC-ACGGTGC
1 CACCATCGGC-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTA-GGTGC
* * *
63833925 TTGGATATACGGGAGCCTC-GAA
64 TTGGATGTGCAGGAGCCTCAG-A
* * * * * ** * **
63833947 CACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCATTATCGGTTACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTAGGTGCT
* * ** *
63834012 AGG-TCGTGC-GAAAGCCTTGGG
65 TGGAT-GTGCAG-GAGCCTCAGA
* * * * * * *
63834033 CACCATCGG-TACAT-GTGCGCTCGGAT-GTCCGGGAGCCTCGGGCACCATCGGTACCTCA-GTG
1 CACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCT-AGGTG
* * *
63834094 CTAT-GATGTCCGGGAGCCTCGGA
63 CT-TGGATGTGCAGGAGCCTCAGA
* ** ** * * ** *
63834117 CACTATCACCAACCTAGGCAATTGGTCGTGCCAAAGCCTCGGGCACCATCGGCAAAATAGG-CCA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGC-
* * *
63834181 TTGGTTGTGCTA-GAGCCTCGGG
64 TTGGATGTGC-AGGAGCCTCAGA
* ** * * * * * * *
63834203 CACCATCGGC-GCCTAGGAGCTTGGAT-GCGCGGGAGCATCAGACACCATCGACAAACTAGGCCT
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGG--T
* * * * *
63834266 GTCCT--CT-TGCGGGAGCCTCGGG
62 G-CTTGGATGTGCAGGAGCCTCAGA
* ** * * * *
63834288 CACCATCGGC-ACAT-GTGTGCTCGGAT-GTGCGGGAGCCTCAGGCACCATCGGCACCTCGGTGC
1 CACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGC
* *
63834350 TAT-GATGTGCCGGAGCCTCGGA
64 T-TGGATGTGCAGGAGCCTCAGA
** * * ** * **
63834372 CACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCAAGCACCATCGACACCTTTGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* * *
63834437 GGATGTGCGGGAACCTCGGA
66 GGATGTGCAGGAGCCTCAGA
* * * *
63834457 CACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
*
63834522 GGATGTGCGGGAGCCTC-GA
66 GGATGTGCAGGAGCCTCAGA
* * *
63834541 CCACCATTGGCAACCTAAG-CC-----C-T---AGAGCCTCGGCCACCATCGGCACCTAGGTGCT
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* *
63834596 TGGATGTGCGGGAGCCACAGA
65 TGGATGTGCAGGAGCCTCAGA
* * * * ** *
63834617 CACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGGGTGCTATCGGCACCTAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* * *
63834682 CGATGTACGGGAGCCTCA-A
66 GGATGTGCAGGAGCCTCAGA
* * * * *
63834701 GCACCATCGGTAACGTAGGCCCTTAGTCGTGCTAGAGCCTGGGGCACCATCGGCACCTAGGTGCT
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* *
63834766 TGGATGTACGGGAGCCTCAGA
65 TGGATGTGCAGGAGCCTCAGA
* * * * ** * **
63834787 CACCATCGGCAAACTAGGCCTTTGGTCCTGCGGGAGCCTCGGGCACCATTTGCTATCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* * *
63834852 TGG-TCGTGC-GAAAGCCTCGGG
65 TGGAT-GTGCAG-GAGCCTCAGA
* * * * * * * * **
63834873 CACCATCGGC-ACAT-GTGCGCTCAGAT-GTCCGGGAGCCTCGGACACTATCGGCAACCTAGGCC
1 CACCATCGGCAACCTAG-GCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTG
63834935 CTTGG-TCGTG-ACGGAGCCTC-GA
63 CTTGGAT-GTGCA-GGAGCCTCAGA
* * ** * ** * * * **
63834957 GCACCATCGACAACCTTGGCCCTCAGTCGTACGAGAGCCTTAGGCACCATCGACAAACTAAGCCC
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* * *
63835022 TTGG-TCGAGCGGGAGCCTC-GTG
64 TTGGAT-GTGCAGGAGCCTCAG-A
** * * * *
63835044 CACCATCGGCAAAATAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
*
63835109 GGATGTGCGGGAGCCTC-GAA
66 GGATGTGCAGGAGCCTCAG-A
* * * * *
63835129 CACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
*
63835194 GGATGTGCGGGAGCCTC-GAA
66 GGATGTGCAGGAGCCTCAG-A
* * * * *
63835214 CACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
*
63835279 GGATGTGCGGGAGCCTC-GAA
66 GGATGTGCAGGAGCCTCAG-A
* * * * *
63835299 CACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
*
63835364 GGATGTGCGGGAGCCTC-GAA
66 GGATGTGCAGGAGCCTCAG-A
* * * * *
63835384 CACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
*
63835449 GGATGTGCGGGAGCCTC-GAA
66 GGATGTGCAGGAGCCTCAG-A
* * * * *
63835469 CACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* * *
63835534 GGATGTGCGGGAGCCTCGGG
66 GGATGTGCAGGAGCCTCAGA
* ** ** *
63835554 CACCATCGGTAAAATAGGCCCTTGGTCGTGCGAGAGCCTCGACCACCATCGGCACCTAAGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
*
63835619 GGATGTGCGGGA-CCGTTCA-A
66 GGATGTGCAGGAGCC--TCAGA
* * * *** * * * **
63835639 CACCATCGGTAACCTTGGCCCTTGGTCGTGCGGGAGCCTCAAACCCCATTGGCAACCTTGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* *
63835704 TGG-TCGTGC-GAGAGCCTCGGG
65 TGGAT-GTGCAG-GAGCCTCAGA
* * ** * * *
63835725 CTCCATCGGAAAAATAGACCCTTGGTCGTGAGAGAGCCTCGGCCACCATCGGCACCTAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
*
63835790 GGATGTGCGGGAGCCTC-GAA
66 GGATGTGCAGGAGCCTCAG-A
* * * * *
63835810 CACCATCGGCAAACTAGGCCCTTGGTCCTGCAAGTGCCTCGGGCACCATCGGCACCTCGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* * * *
63835875 TGATGTGCGGGAGCCTCGGG
66 GGATGTGCAGGAGCCTCAGA
* ** * *
63835895 CACCATTGGCAAAATAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGGAGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* * *
63835960 GGATGTACGGGAGACTCAGA
66 GGATGTGCAGGAGCCTCAGA
* * * ** * * * * *
63835980 AACCATCGGCAAACTAGGCCCGTGGTATTGC-AGGAGCGTCAGGCACCATCGGTACAT-GTGCGC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGCACCTAG-GTGC
* ** * *
63836043 TCGGATGTGTGGGAGCCTGAGG
64 TTGGATGTGCAGGAGCCTCAGA
* ** * **
63836065 CACCATCGGC-ACCTCAGTG---TTGTGAT-GTGCG-GCAGCCTCGGACACTGTCGACAACCTTC
1 CACCATCGGCAACCT-AG-GCCCTTG-G-TCGTGCGAG-AGCCTCGGGCACCATCGGC-ACCTAG
* *
63836124 GTGCTTGGATGTGCAGGAACCTCGGA
60 GTGCTTGGATGTGCAGGAGCCTCAGA
* * * **
63836150 CACCATCGGAAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
** ** *
63836215 TGG-TCGTGTGGGAGCCTTGGG
65 TGGAT-GTGCAGGAGCCTCAGA
** * * * ** *
63836236 CACCATCGGCAAAATTGGCCCTTGTTCGTGCTAGAGCCTCGACCACCATCGGCACCGAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* *
63836301 GGATGTGC-GCGAGCCACGGA
66 GGATGTGCAG-GAGCCTCAGA
* * * * * * *
63836321 CACTATCGGTAACCTAGGCCTTTGGTCATGCTAGAGCCTGGGGCACCATCGGCACCTAGCTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* * *
63836386 GGATGTACGGGAGACTCAGA
66 GGATGTGCAGGAGCCTCAGA
* * * * * ** * **
63836406 CACCATCGGTAAACTAGGCCTTTGGTCTTGCGGGAGCCTCAAGCACCATCGACACCTTTGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* * *
63836471 GGATGTGCGGGAACCTCGGA
66 GGATGTGCAGGAGCCTCAGA
* * * * *
63836491 CACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGACACCATCGGCAAACTAAG-CCA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGC-
* *
63836555 TTGG-TCGTGCGGGAGCCTC-GTG
64 TTGGAT-GTGCAGGAGCCTCAG-A
** * * *
63836577 CACCATCGGCAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
*
63836642 GGATGTGC-GAGAGCCACAGA
66 GGATGTGCAG-GAGCCTCAGA
* * * * *
63836662 CACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCGCTATCGGCACCTAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
* **
63836727 CGATGTGTGGGAGCCTCA-A
66 GGATGTGCAGGAGCCTCAGA
* * * * *
63836746 GCACCATCGGTAACGTAGGCCCTTAGTCGTGCTAGAGCCTGGGGCACCATCGGCACCTAGGTGCT
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* *
63836811 TGGATGTACGGGAGCCTCAGA
65 TGGATGTGCAGGAGCCTCAGA
* * * * * *
63836832 CACCATCGGCAAACTAGGCCTTTGGTCCTGCGGGAGCCTCGGGCACCATCGGCACAT-GTGCGCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAG-GTGCT
** * *
63836896 CAGATGTCCGGGAGCCTCAGA
65 TGGATGTGCAGGAGCCTCAGA
* * * * * * **
63836917 CACTATCGGCAACCTAGGCCATTGGTCGTGACG-GAGCATCGAGCACCATCGACAACCTTGGCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTG-CGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
** * * *
63836981 TCAG-TCGTAC-GAGAGCCTTAGG
64 TTGGAT-GTGCAG-GAGCCTCAGA
* * * * * ** **
63837003 CACCATCGGCAAACTAAGCCCTTGGTCGAGCGGGAGCCTCGTGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* * *
63837068 TGG-TCGTAC-GAGAGCCTCGGC
65 TGGAT-GTGCAG-GAGCCTCAGA
* ** * * * * *
63837089 CACCATCAGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGACAAACTAGG-GC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTG-
* * * * * *
63837151 CTCGG-TCTTACGGGAGCCTCGGG
63 CTTGGAT-GTGCAGGAGCCTCAGA
* ** * *
63837174 CACCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT
1 CACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* ** *
63837237 TTGATGTGTGGGAGCCTCGGA
65 TGGATGTGCAGGAGCCTCAGA
** * * * **
63837258 CACCATCGGCAAATTAGGCCTTTGGTCTTGCGAGAGCCTCGGGCACTATCGGCTACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* * * *
63837323 TGG-TCGTG-TGAAAGCCTCGGG
65 TGGAT-GTGCAG-GAGCCTCAGA
* * * **** ** * * ** *
63837344 CACCATTGG-TACAT-GGCTAGCGGAGGTTCGAGAGCCCCGGG-ATTTATCGGCACCTCGGTGCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA-CCATCGGCACCTAGGTGCT
* * *
63837406 AT-AATGTGCGGGAGCCTCGGA
65 -TGGATGTGCAGGAGCCTCAGA
* ** * * * **
63837427 CACTATCGGCAACCTAGGCCCTTGGTCGTGCCG-GAGCCTCAAGCACCATTGACAACCTTGGCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTG-CGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* * *
63837491 TTTG-TCGTGC-GAGAGCCTCGGG
64 TTGGAT-GTGCAG-GAGCCTCAGA
* * * *
63837513 CACCATCGGCAAACTAAGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
63837565 TAAAATAGGC
Statistics
Matches: 4808, Mismatches: 1028, Indels: 501
0.76 0.16 0.08
Matches are distributed among these distances:
75 60 0.01
76 4 0.00
78 1 0.00
79 1 0.00
81 2 0.00
82 4 0.00
83 41 0.01
84 356 0.07
85 3285 0.68
86 996 0.21
87 56 0.01
88 1 0.00
89 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (85 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTT
GGATGTGCAGGAGCCTCAGA
Found at i:63832202 original size:128 final size:127
Alignment explanation
Indices: 63831389--63838256 Score: 2772
Period size: 128 Copynumber: 53.9 Consensus size: 127
63831379 ACGGAAGCGA
* * * * * * * * ** *
63831389 CGGGCACCATCGTCAAAATAGGCTCTTGGTCGTGTGAGACCCTCGGCCACCATCGACACCTAGGT
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* ** * ** *
63831454 GCTTATATGTGC-AGGAGCCTCAGACACTGTCGAG-AACCTAGGCCCTCGGTCGTGCGGGAGCCT
66 CCTTGGATGTGCGA-GAGCCTCGGACACCATCG-GCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * ** * * * * * * * *
63831517 CGGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGAGAACCACAGACACCAACGACAACCTAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAA-ATAG
* * * * *
63831580 GCCCTTAG-TCGTGCGAGAGCCTCGGGCACCATCGG-TACCTAGGCGCTCGGATGTGCGGGAGCC
64 GCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCC
*
63831643 C
127 T
* * * * * * * * **
63831644 CAGACACCATCGGCAAACTAAGTCCTTGGTCATGCGAGAGCCTCGGGCGCTATCGGCACCTCAGT
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAT-AG-
* * * * * *
63831709 G--CTTCGATGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCTCTTGGTCGTGCGTGAGCCT
64 GCCCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * ** * * * * * * *
63831772 CGGGCACCATCGG-TAGCTGGGTGCTCGGAT-GTGCAGAAGACTCAGACACCATCGGCAAACAAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAG
* * * * * * ***
63831835 GCCCTTGG-TCTTGCGGGAGACTCGGGCATCATCGGCTACCTAGGCCCTTGGTCGTGCAAAAGCC
64 GCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCC
63831899 T
127 T
* * * *** * * *
63831900 CGAGCACCACCGGC-ACCT-GTGTGTTTGG--ATGCACGGAGCCTCGGACACCATCGGCAAACTA
1 CGGGCACCATCGGCAAACTAG-GCCCTTGGTCGTGC-GGGAGCCTCGGGCACCATCGGCAAA-TA
* * * * * ** ** *
63831961 GG-CCTTCGG-TCTTGCGGGAGCCTCGGGCACCATCGG-TACCTCGGTGCTTCGACGTGGGGGAG
63 GGCCCTT-GGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTT-GGTGTGCGGGAG
63832023 CCT
125 CCT
* * ** * ** *
63832026 CGGGCACCATCGGCAAAATAGGCCCTTGGTCGTACTAGAGCCTCGGGCACCATCAGCACCTAGGT
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* * * * * * *
63832091 ACTTCGATGTGCGGGAGCCTCGGACACCATCAGCAAACTAGGCCCGTGGTCTTGCGGGAGCCT
66 CCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * * * *
63832154 TGGGCACCATAGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGTAAAATAAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CAAATAGG
* * **
63832219 CCCTTGG-TCGTGCGAGAGCCTCAGCCACCATCGGC--CTCTAGGTGCTTGGATGTGCGGGAGCC
65 CCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAAC-CTAGGCCCTTGG-TGTGCGGGAGCC
63832281 T
127 T
* * * * * * * *
63832282 TGGACACCATTGGCAGACTAGGCCCTTGGTCCTGCTGGAGCCTTGGGCACCATCAGCAAAATAGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AAATAGG
* * * * * ** *
63832347 CCCTTGGTTTTGCTAGAGCCTCGGGCACCATCGAC-ACCTAGGAGCTTGGATGTACGGGAGCCT
65 CCCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCCT
* * * * * * *
63832410 CAGACACCAGCGGCAAACTAGGCCCGTGGTCTTGTGGGAGCCTCAGGCACCATCGGCAAAATAGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AAATAGG
* * ** *
63832475 CCCTTGG-TCGTACTAGAGCCTCGGACACCATCGGC-ACCTAGGTGCTTCGATGTGCGGGAGCCT
65 CCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTT-GGTGTGCGGGAGCCT
* * * * * * * *
63832538 CGGACACCATCAGCAACCTAGGCCCGTGGTCTTGCGGGAGCCTCGGGCACCATTGGTAAAATAAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CAAATAGG
* * * ** *
63832603 CCCTTGG-TCGTGCGAGAGCCTCAGCCACCATCGGC-CCCTAGGTGCTTGGATGTGCGGGAGCCC
65 CCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCCT
* * * * *
63832666 CGGACACCATTGGCAAACTAGGCCCTTGGTCCTGCGGGAGCCTCGGGCACCATCAGCAAAATGGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AAATAGG
* * * ** *
63832731 CCCTTGGTTGTGCTAGAGCCTCAGG-CACCATCGG-TACCTAGGAGCTTGGATGTACGGGAGCCT
65 CCCTTGGATGTGCGAGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCCT
* * * ** * * * ** *
63832794 CAGACACCATCGGCACA-T-GTGTGCTCGGAT-GTGCCGGAGCCTCAGGG-ATCATCGGCACCTT
1 CGGGCACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGGGAGCCTC-GGGCACCATCGGCAAATA
** * ** * *
63832855 GGTGCTAT-GATGTGTCG-GAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTCATACGGGAG
63 GGCCCT-TGGATGTG-CGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAG
63832918 CCT
125 CCT
* * * * ** ** * * * *
63832921 CGTGCACCACCGAC-ACCTTCGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCAGCAACCTAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAA-ATAG
* * * * * *
63832984 GCCCTTGGACGTACGAGAGCCTCAGG-CACCATCGACAAACTAAGCCCTTGGTCGTGCGGGAACC
64 GCCCTTGGATGTGCGAGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCC
63833048 T
127 T
* * * * ** ** *
63833049 CGGGCACCATCGGTAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGACCACCATCGGCACCTAGGT
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* * * *
63833114 GCTTGGATGTGC-AGGAGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCT
66 CCTTGGATGTGCGA-GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * ** * *
63833177 CGGGCACCATTGGCAACCTAGACCCTTGGTCGTGCTAGAGCCTCGGGCACTATCGGCACCA-AGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-AATAGG
** * * * * * *
63833241 TGCTTGGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGGCTTTGGTCTTGC-GGAGCCT
65 CCCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * * ** * * *
63833304 CGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGCGAAAGCCTTGGGCACCATCGGTACAT-GTG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAG-G
* * * * * ** * **
63833368 CGCTCGGATGTCCGGGAGCCTCAGG-CACCATCGACAAAATAGGCCATTGGTTGTGCTAGAGCCT
65 CCCTTGGATGTGCGAGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCCT
* * * * * * *
63833432 CGGGCACCATCGGC-ACCTAGGAGCTTTGATGCGT--GGGAGCCTCAGACACCATCGACAAACTA
1 CGGGCACCATCGGCAAACTAGG-CCCTTGGT-CGTGCGGGAGCCTCGGGCACCATCGGCAAA-TA
* * * * * * ** *
63833494 GGCACGTGG-TCTTGCGGGAGTCTCGGGCACCATCGGCAGA--T-GTGTGCTCGGATGTGCGGGA
63 GGCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCA-ACCTAG-GCCCTTGG-TGTGCGGGA
63833555 GCCT
124 GCCT
* * * ** * * * * ** *
63833559 CAGGCACCATCGGC-ACCTTGGTGCTATGAT-GTGCCGGAGCCTCAGACACTGTCGGCAACCTAG
1 CGGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA-ATAG
* * * ** ** * *
63833622 GCCCTTGG-TCATGCGGGAGCCTCGTG-CACCATCGAC-ACCTTCGTGCTTGGATGTGCGGAAAC
64 GCCCTTGGAT-GTGCGAGAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGC
63833684 CT
126 CT
* * * ** *
63833686 CGGACACCATCGGCAACCTAGGCCCTTTGTCGTATGAGAGCCTCGGGCACCATCGGCAAACTAAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA-T-AG
* * ** ** * * *
63833751 G-CCTTGG-TCATGCG-GAAGCCTCGGGCACCATCAGTAAAAATTGGCCCTTGGTCGTGTGAGAG
64 GCCCTTGGAT-GTGCGAG-AGCCTCGGACACCATC-GGCAACCTAGGCCCTTGGT-GTGCGGGAG
63833813 CCT
125 CCT
* * ** * * * * *
63833816 CGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCAGGAGCCACGGACACCATCGACAAACCAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAG
* * * * * ** * *
63833879 GCCCTTAG-TCTTGCGGGAGCCTCGGGCACCATCGGC-ATC-ACGGTGCTTGGATATACGGGAGC
64 GCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTA-GGCCCTTGG-TGTGCGGGAGC
63833941 CT
126 CT
** * * * ** * **
63833943 CGAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCATTATCGGTTACCTAGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CAAATAGG
* * * * * * * * *
63834008 CCCTAGG-TCGTGCGAAAGCCTTGGGCACCATCGG-TACAT-GTGCGCTCGGATGTCCGGGAGCC
65 CCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAG-GCCCTTGG-TGTGCGGGAGCC
63834070 T
127 T
* * * * * * ** *
63834071 CGGGCACCATCGG-TACCTCAGTG--CTATGAT-GTCCGGGAGCCTCGGACACTATCACCAACCT
1 CGGGCACCATCGGCAAACT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA-AT
** * * * ** * **
63834132 AGGCAATTGG-TCGTGCCAAAGCCTCGGGCACCATCGGCAAAATAGGCCATTGGTTGTGCTAGAG
62 AGGCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAG
63834196 CCT
125 CCT
** ** * * * * *
63834199 CGGGCACCATCGGC-GCCTAGGAGCTTGGAT-GCGCGGGAGCATCAGACACCATCGACAAACTAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAG
** * * * * ** *
63834262 G-CC-TGTCCTCTTGCGGGAGCCTCGGGCACCATCGGC-ACAT-GTGTGCTCGGATGTGCGGGAG
64 GCCCTTG-GAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAG-GCCCTTGG-TGTGCGGGAG
63834323 CCT
125 CCT
* * * ** * * * ** *
63834326 CAGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCCGGAGCCTCGGACACTGTCGGCAACCTAG
1 CGGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA-ATAG
* * * * ** ** *
63834389 GCCCTTGG-TCATGCGGGAGCCTC-AAGCACCATCGAC-ACCTTTGTGCTTGGATGTGCGGGAAC
64 GCCCTTGGAT-GTGCGAGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGC
63834451 CT
126 CT
* * * * ** *
63834453 CGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGC
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* * * * * *
63834518 GCTCGGATGTGCGGGAGCCTC-GACCACCATTGGCAACCTAAGCCC------T---AGAGCCT
66 CCTTGGATGTGCGAGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTGTGCGGGAGCCT
* * ** * * *
63834571 CGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCACAGACACCATCGGCAAACTAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAG
* *** * ** * *
63834634 GCCCTTGGTCTTGTG-G-GAGCCTCGGGTGCTATCGGC-ACCTAGGTGCTTCGATGTACGGGAGC
64 GCCCTTGG--ATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTT-GGTGTGCGGGAGC
63834696 CT
126 CT
** * * ** * **
63834698 CAAGCACCATCGG-TAACGTAGGCCCTTAGTCGTGCTAGAGCCTGGGGCACCATCGGCACCTAGG
1 CGGGCACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGG
** * * * * * *
63834762 TGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCCTGCGGGAGCCT
65 CCCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
** * * ** *
63834826 CGGGCACCATTTGCTATCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGCACAT-GTG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAG-G
* ** * * *
63834890 CGCTCAGATGTCCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCGTGAC-GGAGCCT
65 CCCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTG-CGGGAGCCT
* * * * ** * * ** * *
63834954 CGAGCACCATCGACAACCTTGGCCCTCAGTCGTACGAGAGCCTTAGGCACCATCGACAAACTAAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAGG
* * ** * *
63835019 CCCTTGG-TCGAGCGGGAGCCTCGTG-CACCATCGGCAAAATAGGCCCTTGGTCGTACGAGAGCC
65 CCCTTGGAT-GTGCGAGAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCC
63835082 T
127 T
* * * ** **
63835083 CGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAACTAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAG
* * * **
63835146 GCCCTTGG-TCGTACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGATGTGCGGGAGCC
64 GCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCC
63835209 T
127 T
** * * * * ** *
63835210 CGAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* * * * * *
63835275 GCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCT
66 CCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * ** **
63835338 CGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAACTAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAG
* * * **
63835401 GCCCTTGG-TCGTACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGATGTGCGGGAGCC
64 GCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCC
63835464 T
127 T
** * * * * ** *
63835465 CGAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* * * * ** *
63835530 GCTTGGATGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGAGAGCCT
66 CCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
** * * ** ** * *
63835593 CGACCACCATCGGC-ACCTAAGTGCTTGGAT-GTGCGGGA-CCGTTC-AACACCATCGGTAACCT
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCC--TCGGGCACCATCGGCAA-AT
* * ** * * * *
63835654 TGGCCCTTGG-TCGTGCGGGAGCCTCAAACCCCATTGGCAACCTTGGCCCTTGGTCGTGCGAGAG
62 AGGCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAG
63835718 CCT
125 CCT
* * * * * * * ** *
63835721 CGGGCTCCATCGGAAAAATAGACCCTTGGTCGTGAGAGAGCCTCGGCCACCATCGGCACCTAGGT
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* * * * * ** *
63835786 GCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCCTGCAAGTGCCT
66 CCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * * * *
63835849 CGGGCACCATCGGC-ACCTCGGTGCTTTGAT-GTGCGGGAGCCTCGGGCACCATTGGCAAAATAG
1 CGGGCACCATCGGCAAACTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AAATAG
* * ** * *
63835912 GCCCTTGG-TCGTGCAAGAGCCTCGGGCACCATCGGC-ACCTAGGAGCTTGGATGTACGGGAGAC
64 GCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCC
63835975 T
127 T
* ** * ** * * * * *
63835976 CAGAAACCATCGGCAAACTAGGCCCGTGGTATTGCAGGAGCGTCAGGCACCATCGGTACAT-GTG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAG-G
* * * * * *
63836040 CGCTCGGATGTGTGGGAGCCT-GAGGCACCATCGGC-ACCTCAGTG---TTGTGATGTGCGGCAG
65 CCCTTGGATGTGCGAGAGCCTCG-GACACCATCGGCAACCT-AG-GCCCTTG-G-TGTGCGGGAG
63836100 CCT
125 CCT
* ** * * ** ** * * *
63836103 CGGACACTGTCGACAACCTTCGTGCTTGGAT-GTGCAGGAACCTCGGACACCATCGG-AAACCTA
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA--TA
* * * *
63836166 GGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGTGGGAGC
63 GGCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGC
63836230 CT
126 CT
* * * * ** ** *** *
63836232 TGGGCACCATCGGCAAAATTGGCCCTTGTTCGTGCTAGAGCCTCGACCACCATCGGCACCGAGGT
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* * * * * * * **
63836297 GCTTGGATGTGCGCGAGCCACGGACACTATCGGTAACCTAGGCCTTTGGTCATGCTAGAGCCT
66 CCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * * * * * *
63836360 GGGGCACCATCGGC-ACCTA-GCTGCTTGGAT-GTACGGGAGACTCAGACACCATCGGTAAACTA
1 CGGGCACCATCGGCAAACTAGGC-CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TA
* * * * * ** ** *
63836422 GGCCTTTGG-TCTTGCGGGAGCCTC-AAGCACCATCGAC-ACCTTTGTGCTTGGATGTGCGGGAA
63 GGCCCTTGGAT-GTGCGAGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAG
63836484 CCT
125 CCT
* * * * * *
63836487 CGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGACACCATCGGCAAACTAAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAGG
* * ** * *
63836552 CCATTGG-TCGTGCGGGAGCCTCGTG-CACCATCGGCAAAATTGGCCCTTGGTCGTGCGAGAGCC
65 CCCTTGGAT-GTGCGAGAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCC
63836615 T
127 T
* ** * * * *
63836616 CGGCCACCATCGGC-AACTAGGTGCTTGGAT-GTGCGAGAGCCACAGACACCATCGGCAAACTAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAG
* * * * * ** * *
63836679 GCCCTTGG-TCTTGCGGGAGCCTCGGGCGCTATCGGC-ACCTAGGTGCTTCGATGTGTGGGAGCC
64 GCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTT-GGTGTGCGGGAGCC
63836742 T
127 T
** * * ** * **
63836743 CAAGCACCATCGG-TAACGTAGGCCCTTAGTCGTGCTAGAGCCTGGGGCACCATCGGCACCTAGG
1 CGGGCACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGG
** * * * * * *
63836807 TGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCCTGCGGGAGCCT
65 CCCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * * * * * * *
63836871 CGGGCACCATCGGCACA-T-GTGCGCTCAGAT-GTCCGGGAGCCTCAGACACTATCGGCAACCTA
1 CGGGCACCATCGGCAAACTAG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA-ATA
* * * * ** * *
63836933 GGCCATTGG-TCGTGACG-GAGCATC-GAGCACCATCGACAACCTTGGCCCTCAGTCGTACGAGA
63 GGCCCTTGGAT-GTG-CGAGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGA
63836995 GCCT
124 GCCT
** * * *
63836999 TAGGCACCATCGGCAAACTAAGCCCTTGGTCGAGCGGGAGCCTCGTGCACCATCGGCAAAATAGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AAATAGG
* * * **
63837064 CCCTTGG-TCGTACGAGAGCCTCGGCCACCATCAGC-ACCTAGGTGCTTGGATGTGCGGGAGCCT
65 CCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCCT
* * * * * * * ** * *
63837127 CAGACACCATCGACAAACTAGGGCCTCGGTCTTACGGGAGCCTCGGGCACCATCGGCACCTCGGT
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* * * * * * * *
63837192 GCTTCGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTTGATGTGTGGGAGCCT
66 CCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTGTGCGGGAGCCT
* * * * * * **
63837254 CGGACACCATCGGCAAATTAGGCCTTTGGTCTTGCGAGAGCCTCGGGCACTATCGGCTACCTAGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AAATAGG
* * * * * * **** * * * *
63837319 CCCTTGG-TCGTGTGAAAGCCTCGGGCACCATTGG-TACAT-GGCTAGCGGAGGTTCGAGAGCCC
65 CCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCCT
** * * ** ** * * *
63837381 CGGG-ATTTATCGGC-ACCTCGGTGCTATAAT-GTGCGGGAGCCTCGGACACTATCGGCAACCTA
1 CGGGCA-CCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA-ATA
* * * * * *
63837443 GGCCCTTGG-TCGTGCCG-GAGCCTC-AAGCACCATTGACAACCTTGGCCCTTTGTCGTGCGAGA
63 GGCCCTTGGAT-GTG-CGAGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGA
63837505 GCCT
124 GCCT
* * *
63837509 CGGGCACCATCGGCAAACTAAGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CAAATAGG
* * ***
63837574 CCCTTGG-TCGTGCGAGAGCCTC-GACCAGCATCGGC-ACCTAAGTGGTTGGATGTGCGGGA-CC
65 CCCTTGGAT-GTGCGAGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TGTGCGGGAGCC
63837635 GTT
127 --T
** * * *** * * *
63837638 C-AACACCGTCGGCAAACTTGGCCCTTGGTCGTGCGGGAGCCTCAAAC-CCTATTGGCAACCTTG
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC-ATCGGCAA-ATAG
* * * * ** * * *
63837701 GCCCTTAG-TCGTGCGAGAGCCTCGGGCTCCATCGGAAAAATAGACCCTTGGTCGTGAGAGAGCC
64 GCCCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCC
63837765 T
127 T
* * * ** * *
63837766 CGGCCACCATCGG-TACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATTGGCAAACTAG
1 CGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA-TAG
* * * * * * *
63837829 GCCCTTGG-TCCTGC-ACGTGCCTCGGGCACCATCGGC-ACCTCGGTGCTTTGATGTGCGGGAGC
64 GCCCTTGGAT-GTGCGA-GAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTGTGCGGGAGC
63837891 CT
126 CT
* * ** ** *
63837893 CGGGCACCATTGGCAAAATAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGGA
1 CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
* * * * * * * * * * *
63837958 GCTTGGATGTACGGGAGACTCAGAAACCATCGGCAAACTAGGCCCGTGGTATTGCAGGAGCAT
66 CCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGCGGGAGCCT
* * * * * * **
63838021 CAGGCACCATCGGTACA-T-GTGCGCTCGGAT-GTGTGGGAGCCT-GAGGCACCATCGGCACCTC
1 CGGGCACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGGGAGCCTCG-GGCACCATCGGCAAAT-
** * ** ** *
63838082 AGTG---TTGTGATGTGCG-GCAGCCTCGGACACTGTCGACAACCTTCGTGCTTGGATGTGCAGG
62 AG-GCCCTTG-GATGTGCGAG-AGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGCGGG
*
63838143 AACCT
123 AGCCT
* * ** ** *
63838148 CGGACACCATCGG-AAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGACCACCATCGGCACCTAAG
1 CGGGCACCATCGGCAAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGG
** * * ** *
63838212 TGCTTGGATGTGCGGGACCCTCCAACACCATCGGCAACCTTGGCC
65 CCCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCC
63838257 NNNNNNNNNN
Statistics
Matches: 5104, Mismatches: 1329, Indels: 614
0.72 0.19 0.09
Matches are distributed among these distances:
117 41 0.01
118 40 0.01
119 2 0.00
120 4 0.00
121 1 0.00
124 1 0.00
125 8 0.00
126 160 0.03
127 1606 0.31
128 2713 0.53
129 482 0.09
130 46 0.01
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (127 bp):
CGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGC
CCTTGGATGTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTGTGCGGGAGCCT
Found at i:63832280 original size:256 final size:254
Alignment explanation
Indices: 63831934--63838256 Score: 2046
Period size: 255 Copynumber: 24.8 Consensus size: 254
63831924 TTGGATGCAC
* * * * *
63831934 GGAGCCTCGGACACCATCGGCAAACTAGG-CCTTCGGTCTTGCGGGAGCCTCGGGCACCATCGGT
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTT-GGTCGTGCGAGAGCCTCAGGCACCATCGG-
* * * * * * * **
63831998 ACCTCGGTGCTTCGACGTGGGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTACTA
64 CCCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGG
* * * *
63832063 GAGCCTCGGGCACCATCAGCACCTAGGTACTTCGATGTGCGGGAGCCTCGGACACCATCAGCAAA
129 GAGCCTCGGGCACCATCGGCACCTAGGTCCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAAC
* * * *
63832128 CTAGGCCCGTGGTCTTGCGGGAGCCTTGGGCACCATAGGCAAACTAAGCCCTTGGTCGTGCG
193 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCG
* * * *
63832190 GGAGCCTCGGGCACCATTGGTAAAATAAGCCCTTGGTCGTGCGAGAGCCTCAGCCACCATCGGCC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCC
* * * * * *
63832255 TCTAGGTGCTTGGATGTGCGGGAGCCTTGGACACCATTGGCAGACTAGGCCCTTGGTCCTGCTGG
66 -CTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGGG
* * ** * * * ** * *
63832320 AGCCTTGGGCACCATCAGCAAAATAGGCCCTTGGTTTTGCTAGAGCCTCGGGCACCATCGAC-AC
130 AGCCTCGGGCACCATCGGC-ACCTAGGTCCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAAC
** * * * * * * * *
63832384 CTAGGAGCTTGGAT-GTACGGGAGCCTCAGACACCAGCGGCAAACTAGGCCCGTGGTCTTGTG
193 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCG
* * *
63832446 GGAGCCTCAGGCACCATCGGCAAAATAGGCCCTTGGTCGTACTAGAGCCTC-GGACACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAGG-CACCATCGGC
* * ** * *
63832510 ACCTAGGTGCTTCGATGTGCGGGAGCCTCGGACACCATCAGCAACCTAGGCCCGTGGTCTTGCGG
65 -CCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGG
* * ** * * * * * * *
63832575 GAGCCTCGGGCACCATTGGTAAAATAAGCCCTTGGTCGTGCGAGAGCCTCAGCCACCATCGGC-C
129 GAGCCTCGGGCACCATCGG-CACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGACACCATCGGCAA
** * * * * *
63832639 CCTAGGTGCTTGGAT-GTGCGGGAGCCCCGGACACCATTGGCAAACTAGGCCCTTGGTCCTGCG
192 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCG
* * * * *
63832702 GGAGCCTCGGGCACCATCAGCAAAATGGGCCCTTGGTTGTGCTAGAGCCTCAGGCACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGG-C
* * * * ** * *
63832767 CCTAGGAGCTTGGATGTACGGGAGCCTCAGACACCATCGGC-ACAT-GTGTGCTCGGAT-GTGCC
65 CCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAAATAG-GCCCTTGG-TCGTGCG
* * * * **
63832829 GGAGCCTCAGGG-ATCATCGGCACCTTGGTGCTATGATGTGTC-GGAGCCTCAGACACTGTCGGC
128 GGAGCCTC-GGGCACCATCGGCACCTAGGTCCT-TGATGTG-CGGGAGCCTCGGACACCATCGGC
* * * * * * ** **
63832892 AACCTAGGCCCTTGGTCATACGGGAGCCTCGTGCACCACCGAC-ACCTTCGTGCTTGGAT-GTGC
190 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGC
63832955 G
254 G
* * * ** * * *
63832956 GGAACCTCGGACACCATCAGCAACCTAGGCCCTTGGACGTACGAGAGCCTCAGGCACCATCGACA
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGC-
* * ** * * * *
63833021 AACTAAGCCCTTGG-TCGTGCGGGAACCTCGGGCACCATCGGTAAAATTGGCCCTTGGTCGTGCG
65 -CCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCG
* ** * * *
63833085 AGAGCCTCGACCACCATCGGCACCTAGGTGCTTGGATGTGCAGGAGCCACGGACACCATCGGCAA
128 GGAGCCTCGGGCACCATCGGCACCTAGGTCCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAA
* * * * *
63833150 ACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGCAACCT-AGACCCTTGGTCGTGCT
192 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAG-CCCTTGGTCGTGCG
* * ** ** * *
63833213 AGAGCCTCGGGCACTATCGGCACCA-AGGTGCTTGGAT-GTGCGGGAGCCTC-GGACACCATCGA
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCAGG-CACCATCGG
* * * * * ** *
63833275 CAAACTAGG-GCTTTGG-TCTTGC-GGAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGGTCGT
64 C--CCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGT
** * * * * *
63833337 GCGAAAGCCTTGGGCACCATCGGTA-C-ATGTGCGCTCGGATGTCCGGGAGCCTCAGG-CACCAT
125 GCGGGAGCCTCGGGCACCATCGGCACCTAGGT-C-CT-TGATGTGCGGGAGCCTC-GGACACCAT
* ** * * ** * * *
63833399 CGACAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGAG-CTTTGAT
186 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTA--AGCCCTTGGT
63833462 GCGT--G
249 -CGTGCG
* * * * * * * * * *
63833467 GGAGCCTCAGACACCATCGACAAACTAGGCACGTGGTCTTGCGGGAGTCTCGGGCACCATCGG-C
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCC
** * ** * ** *
63833531 AGATGTGTGCTCGGATGTGCGGGAGCCTCAGG-CACCATCGGC-ACCTTGGTGCTATGAT-GTGC
66 CTA-G-GTGCTTGGATGTGCGGGAGCCTC-GGACACCATCGGCAAAATAGGCCCT-TGGTCGTGC
* * * ** * * * *
63833593 CGGAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGTG-CACCATCGA
127 GGGAGCCTCGGGCACCATCGGC-ACCTAGGTCCTTGAT-GTGCGGGAGCCTCG-GACACCATCGG
** ** * * * * * * *
63833657 C-ACCTTCGTGCTTGGAT-GTGCGGAAACCTCGGACACCATCGGCAACCTAGGCCCTTTGTCGTA
189 CAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTG
*
63833720 TG
253 CG
* * * *
63833722 AGAGCCTCGGGCACCATCGGCAAACTAAGG-CCTTGGTCATGCG-GAAGCCTCGGGCACCATCAG
1 GGAGCCTCGGGCACCATCGGCAAAAT-AGGCCCTTGGTCGTGCGAG-AGCCTCAGGCACCATC-G
**** * ** * * * ** **
63833785 TAAAAATTGGCCCTTGG-TCGTGTGAGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-G
63 --GCCCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGG-TCG
* * * * * * *
63833847 TGCAGGAGCCACGGACACCATCGACAAACC-AGGCCCTT-AGTCTTGCGGGAGCCTCGGGCACCA
124 TGCGGGAGCCTCGGGCACCATCGGC--ACCTAGGTCCTTGA-T-GTGCGGGAGCCTCGGACACCA
* ** * * ** * * *
63833910 TCGGC-ATC-ACGGTGCTTGGAT-ATACGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGG
185 TCGGCAACCTA-GGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGG
*
63833972 TCTTGCG
248 TCGTGCG
** ** ** * * ** **
63833979 GGAGCCTCGGGCATTATCGGTTACCTAGGCCCTAGGTCGTGCGAAAGCCTTGGGCACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCC
* * * * * ** * *
63834044 C-ATGTGCGCTCGGATGTCCGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-GTC
66 CTA-G-GTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAAAT-AG-GCCCT-TGGTCGTG
* * ** * * *** *
63834104 CGGGAGCCTCGGACACTATCACCAACCTAGG-CAATTGGTCGTGCCAAAGCCTCGGGCACCATCG
126 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGTC-CTTGAT-GTGCGGGAGCCTCGGACACCATCG
** * * ** ** * ** *
63834168 GCAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-GCCTAGGAGCTTGGAT-GC
188 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGT
63834231 GCG
252 GCG
* * * * * ** * * *
63834234 GGAGCATCAGACACCATCGACAAACTAGG-CCTGTCCTCTTGCGGGAGCCTCGGGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCT-TGGTCGTGCGAGAGCCTCAGGCACCATCGGC
* * ** * ** *
63834298 AC-ATGTGTGCTCGGATGTGCGGGAGCCTCAGG-CACCATCGGC-ACCTCGGTGCTATGAT-GTG
65 CCTA-G-GTGCTTGGATGTGCGGGAGCCTC-GGACACCATCGGCAAAATAGGCCCT-TGGTCGTG
* * ** * * * *
63834359 CCGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTC-AAGCACCATCG
126 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGA-CACCATCG
* ** ** * * * *
63834423 AC-ACCTTTGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGT
188 GCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGT
*
63834486 ACG
252 GCG
* ** * * * * * *
63834489 AGAGCCTCGGGCACCATCGGC-ACCTGGGCGCTCGGAT-GTGCGGGAGCCTC-GACCACCATTGG
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCAG-GCACCATCGG
* * * * ** **
63834551 CAACCTAAG-CCCT--A-------GAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTG
64 C--CCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGG-TCGTG
* * * * * * * * *** *
63834604 CGGGAGCCACAGACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGGGTGCTATCGG
126 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGACACCATCGG
** * * ** * * *
63834669 C-ACCTAGGTGCTTCGAT-GTACGGGAGCCTCAAGCACCATCGG-TAACGTAGGCCCTTAGTCGT
189 CAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAAGCCCTTGGTCGT
*
63834731 GCT
252 GCG
* * ** ** * * *
63834734 AGAGCCTGGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCAGGCACCATCGGC
* * * * ** * **
63834797 AAACTAGG-CCTTTGG-TCCTGCGGGAGCCTCGGGCACCATTTGCTATCTAGGCCCTTGGTCGTG
65 --CCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTG
** * * * *
63834860 CGAAAGCCTCGGGCACCATCGGCA-C-ATGTGCGCTCAGATGTCCGGGAGCCTCGGACACTATCG
126 CGGGAGCCTCGGGCACCATCGGCACCTAGGT-C-CT-TGATGTGCGGGAGCCTCGGACACCATCG
* * * ** **
63834923 GCAACCTAGGCCCTTGGTCGTGAC-GGAGCCTCGAGCACCATCGACAACCTTGGCCCTCAGTCGT
188 GCAACCTAGGCCCTTGGTCGTG-CGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGT
*
63834987 ACG
252 GCG
* ** * * * * *
63834990 AGAGCCTTAGGCACCATCGACAAACTAAGCCCTTGGTCGAGCGGGAGCCTC-GTGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAG-GCACCATCGGC
** ** * * * * ** **
63835054 AAAATAGGCCCTTGG-TCGTACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTG
65 --CCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGG-TCGTG
** * * * * * * *
63835116 CGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAG
126 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGACACCATCGG
** ** * *
63835181 C-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTA
189 CAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTG
63835244 CG
253 CG
* * * ** ** * *
63835246 AGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTC-GAACACCATCGG
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCAG-GCACCATCGG
* ** * * * * ** **
63835308 CAAACTAGGCCCTTGG-TCGTACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GT
64 C--CCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGG-TCGT
** * * * * * * *
63835370 GCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCA
125 GCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGACACCATCG
** ** *
63835435 GC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGT
188 GCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGT
*
63835498 ACG
252 GCG
* * * ** ** * *
63835501 AGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGT
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCAGGCACCATCGG-
*** ** * ** * **
63835564 AAAATAGGCCCTTGG-TCGTGCGAGAGCCTC-GACCACCATCGGC-ACCTAAGTGCTTGGAT-GT
64 -CCCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAAAATAGGCCCTTGG-TCGT
** * * * * ** *
63835625 GCGGGA-CCGTTC-AACACCATCGGTAACCTTGGCCCTTGGTCGTGCGGGAGCCTCAAACCCCAT
125 GCGGGAGCC--TCGGGCACCATCGG-CACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGACACCAT
* * * * * *
63835688 TGGCAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGGGCTCCATCGGAAAAAT-AGACCCTTGGTC
186 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAG-CCCTTGGTC
*
63835752 GTGAG
250 GTGCG
* * ** ** * *
63835757 AGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTC-GAACACCATCGG
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCAG-GCACCATCGG
* ** * ** * * ** * * * *
63835819 CAAACTAGGCCCTTGG-TCCTGCAAGTGCCTCGGGCACCATCGGC-ACCTCGGTGCTTTGAT-GT
64 C--CCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAGG-CCCTTGGTCGT
* ** * * ** *
63835881 GCGGGAGCCTCGGGCACCATTGGCAAAATAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCG
125 GCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGACACCATCG
** * * * ** * * **
63835946 GC-ACCTAGGAGCTTGGAT-GTACGGGAGACTCAGAAACCATCGGCAAACTAGGCCCGTGGTATT
188 GCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGT
*
63836009 GCA
252 GCG
* * * * * * * * *
63836012 GGAGCGTCAGGCACCATCGG-TACAT-GTGCGCTCGGAT-GTGTGGGAGCCTGAGGCACCATCGG
1 GGAGCCTCGGGCACCATCGGCAAAATAG-GCCCTTGG-TCGTGCGAGAGCCTCAGGCACCATCGG
* ** * ** ** **
63836074 CACCTCA-GTG-TTGTGATGTGCGGCAGCCTCGGACACTGTCGACAACCTTCGTGCTTGGAT-GT
64 C-CCT-AGGTGCTTG-GATGTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGG-TCGT
* * * * * * * *
63836136 GCAGGAACCTCGGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
125 GCGGGAGCCTCGGGCACCATCGG-CACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGACACCATCG
* * * * * ** *
63836201 GCAAACTAAGCCCTTGGTCGTGTGGGAGCCTTGGGCACCATCGGCAAAATTGGCCCTTGTTCGTG
188 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTG
*
63836266 CT
253 CG
* ** *** ** * * *
63836268 AGAGCCTCGACCACCATCGGC-ACCGAGGTGCTTGGAT-GTGCGCGAGCCAC-GGACACTATCGG
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCAGG-CACCATCGG
* * * ** * * ** *
63836330 TAACCTAGG-CCTTTGG-TCATGCTAGAGCCTGGGGCACCATCGGC-ACCTA-GCTGCTTGGAT-
64 --CCCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAGGC-CCTTGG-TC
* * * * * * * * *
63836390 GTACGGGAGACTCAGACACCATCGGTAAACTAGG-CCTTTGGTCTTGCGGGAGCCTC-AAGCACC
123 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGTCC-TTGAT-GTGCGGGAGCCTCGGA-CACC
* ** ** * * * *
63836453 ATCGAC-ACCTTTGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGG
184 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGG
*
63836516 TCGTACG
248 TCGTGCG
* * * * * *
63836523 AGAGCCTCGGACACCATCGGCAAACTAAGCCATTGGTCGTGCGGGAGCCTC-GTGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAG-GCACCATCGGC
** * ** * * * **
63836587 AAAATTGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGGC-AACTAGGTGCTTGGAT-GTG
65 --CCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGG-TCGTG
* * * * * * * * * * *
63836649 CGAGAGCCACAGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCGCTATCGG
126 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGACACCATCGG
** * * ** * * *
63836714 C-ACCTAGGTGCTTCGAT-GTGTGGGAGCCTCAAGCACCATCGG-TAACGTAGGCCCTTAGTCGT
189 CAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAAGCCCTTGGTCGT
*
63836776 GCT
252 GCG
* * ** ** * * *
63836779 AGAGCCTGGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCAGGCACCATCGGC
* * * * * * * *
63836842 AAACTAGG-CCTTTGG-TCCTGCGGGAGCCTCGGGCACCATCGGC-ACAT-GTGCGCTCAGAT-G
65 --CCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAATAG-GCCCT-TGGTCG
* * * * * *
63836902 TCCGGGAGCCTCAGACACTATCGGCAACCTAGG-CCATTGGTCGTGAC-GGAGCATC-GAGCACC
124 TGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTCC-TTGAT-GTG-CGGGAGCCTCGGA-CACC
* * ** * * **
63836964 ATCGACAACCTTGGCCCTCAGTCGTACGAGAGCCTTAGGCACCATCGGCAAACTAAGCCCTTGGT
184 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGT
*
63837029 CGAGCG
249 CGTGCG
* * *
63837035 GGAGCCTCGTGCACCATCGGCAAAATAGGCCCTTGGTCGTACGAGAGCCTC-GGCCACCATCAGC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAGG-CACCATCGGC
* * * * * * *
63837099 ACCTAGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGACAAACTAGGGCCTCGGTCTTACGG
65 -CCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGG
* * *
63837164 GAGCCTCGGGCACCATCGGCACCTCGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGGC-AC
129 GAGCCTCGGGCACCATCGGCACCTAGGTCCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAAC
* * * * * * * * *
63837228 CTAGGTGCTTTGAT-GTGTGGGAGCCTCGGACACCATCGGCAAATTAGGCCTTTGGTCTTGCG
193 CTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCG
* * * ** * * * * **
63837290 AGAGCCTCGGGCACTATCGGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATTGGTA
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCC
* * * * *** ** * ** **
63837355 C-ATGGCTAGC--GGAGGTTCGAGAGCCCCGGGA-TTTATCGGC-ACCTCGGTGCTATAAT-GTG
66 CTA-GG-T-GCTTGGATGTGCGGGAGCCTC-GGACACCATCGGCAAAATAGGCCCT-TGGTCGTG
* * * * * * *
63837414 CGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCGTGCCGGAGCCTC-AAGCACCATTG
126 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGTCCTTGAT-GTGCGGGAGCCTCGGA-CACCATCG
* * * * *
63837478 ACAACCTTGGCCCTTTGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCTTTGGTCGTG
188 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTG
63837543 CG
253 CG
* * *
63837545 GGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGAGAGCCTC-GACCAGCATCGGC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAG-GCACCATCGGC
* * * * * *
63837609 ACCTAAGTGGTTGGATGTGCGGGA-CCGTTC-AACACCGTCGGCAAACTTGGCCCTTGGTCGTGC
65 -CCTAGGTGCTTGGATGTGCGGGAGCC--TCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGC
*** * * * * * *
63837672 GGGAGCCTCAAAC-CCTATTGGCAACCTTGGCCCTT-AGTCGTGCGAGAGCCTCGGGCTCCATCG
127 GGGAGCCTCGGGCACC-ATCGGC-ACCTAGGTCCTTGA-T-GTGCGGGAGCCTCGGACACCATCG
* ** * * * * * * * **
63837735 GAAAAATAGACCCTTGGTCGTGAGAGAGCCTCGGCCACCATCGG-TACCTAGGTGCTTGGAT-GT
188 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGT
63837798 GCG
252 GCG
* * * * * *
63837801 GGAGCCTCGGACACCATTGGCAAACTAGGCCCTTGGTCCTGC-ACGTGCCTCGGGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGA-GAGCCTCAGGCACCATCGGC
* * * * **
63837865 ACCTCGGTGCTTTGATGTGCGGGAGCCTCGGGCACCATTGGCAAAATAGGCCCTTGGTCGTGCAA
65 -CCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGG
** * * * * *
63837930 GAGCCTCGGGCACCATCGGCACCTAGGAGCTTGGATGTACGGGAGACTCAGAAACCATCGGCAAA
129 GAGCCTCGGGCACCATCGGCACCTAGGTCCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAAC
* ** * * * * * ** * * *
63837995 CTAGGCCCGTGGTATTGCAGGAGCATCAGGCACCATCGGTACA-TGTGCGCTCGGAT-GTGTG
193 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGCG
** *
63838056 GGAGCCT-GAGGCACCATCGGC-ACCTCAGTG---TTGTGAT-GTGCG-GCAGCCTC-GGACACT
1 GGAGCCTCG-GGCACCATCGGCAAAAT-AG-GCCCTTG-G-TCGTGCGAG-AGCCTCAGG-CACC
* * ** * * *
63838113 GTCGACAACCTTCGTGCTTGGATGTGCAGGAACCTCGGACACCATCGG-AAACCTAGGCCCTTGG
59 ATCGGC--CCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAA-ATAGGCCCTTGG
* ** * * * **
63838177 TCGTGCGAGAGCCTCGACCACCATCGGCACCTAAGTGCTTGGATGTGCGGGACCCTCCAACACCA
121 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTCCTT-GATGTGCGGGAGCCTCGGACACCA
*
63838242 TCGGCAACCTTGGCC
185 TCGGCAACCTAGGCC
63838257 NNNNNNNNNN
Statistics
Matches: 4710, Mismatches: 1090, Indels: 535
0.74 0.17 0.08
Matches are distributed among these distances:
244 6 0.00
245 190 0.04
246 3 0.00
252 2 0.00
253 53 0.01
254 370 0.08
255 1811 0.38
256 1702 0.36
257 557 0.12
258 13 0.00
259 3 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (254 bp):
GGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCC
CTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGA
GCCTCGGGCACCATCGGCACCTAGGTCCTTGATGTGCGGGAGCCTCGGACACCATCGGCAACCTA
GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCG
Found at i:63832984 original size:596 final size:592
Alignment explanation
Indices: 63831812--63833911 Score: 1705
Period size: 596 Copynumber: 3.5 Consensus size: 592
63831802 GTGCAGAAGA
* * * * * * **
63831812 CTCAGACACCATCGGCAAACAAGGCCCTTGGTCTTGCGGGAGACTCGGGCATCATCGGCTACCTA
1 CTCAGACACCAGCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTC-GGCACCATCGGCAAAATA
* * * * **
63831877 GGCCCTTGGTCGTGCAAAAGCCTC-GAGCACCACCGGCACCT-GTGTGTTTGGATGCAC-GGAGC
65 GGCCCTTGGTCGTGC-AGAGCCTCGGA-CACCATCGGCACCTAG-GTGCTTCGATGTGCGGGAGC
* **
63831939 CTCGGACACCATCGGCAAACTAGG-CCTTCGGTCTTGCGGGAGCCTCGGGCACCATCGGT-ACCT
127 CTCGGACACCATCGGCAAACTAGGCCCTT-GGTCTTGCGGGAGCCTCGGGCACCATTGGTAAAAT
* ** * * * * * ** ** * **
63832002 CGGTGCTTCGACGTGGGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTACTAGAG
191 -AGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAG
* * * ** * * *
63832066 CCTCGGGCACCATC-AGC-ACCTAGGTACTTCGAT-GTGCGGGAGCCTCGGACACCATCAGCAAA
253 CCACGGACACCATCGA-CAAACTAGGCCCTT-GGTCTTGCGGGAGCCTCGGGCACCATCAGCAAA
* * ** ** * * ** * * *
63832128 CTAGGCCCGT-GGTCTTGCGGGAGCCTTGGGCACCATAGGCA-AACTAAGCCCTTGG-TCGTGCG
316 ATAGGCCC-TAGGTCGTGCGAAAGCCTCAGGCACCATCGGTACATGTGAG--CTCGGAT-GTACG
* * * ** * * * * * *
63832190 GGAGCCTCGGGCACCATTGGTAAAATAAGCCCTTGG-TCGTGCGAGAGCCTCAGCCACCATCGGC
377 GGAGCCTCAGACACCATCGACAAAATAGGCCATCGGAT-GTGCCAGAGCCTCGGGCACCATCGGC
* * ** * * * * * * *
63832254 -CTCTAGGTGCT-TGGATGTG-CGGGAGCCTTGGACACCATTGGCAGACTAGGCCCTTGGTCCTG
441 AC-CTAGGAGCTAT-GATGCGTC-GGAGCCTCAGACACCATCGACAAACTAGGCACGTGGTCATA
* * * * ** * * * ** *
63832316 CTGGAGCCTTGGGCACCATC-AGCAAAATAG-GCCCTTGGTTTTGCTAGAGCCTCGGGCACCATC
503 CGGGAGCCTCGGGCACCACCGA-C-ACAT-GTGTGCTCGGATGTGCGGGAACCTC-GGCACCATC
63832379 G-ACACCTAGGAGCTTGGATGTACGGGAGC
564 GCA-ACCTAGGAGCTTGGATGTACGGGAGC
* * *
63832408 CTCAGACACCAGCGGCAAACTAGGCCCGTGGTCTTGTGGGAGCCTCAGGCACCATCGGCAAAATA
1 CTCAGACACCAGCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTC-GGCACCATCGGCAAAATA
*
63832473 GGCCCTTGGTCGTACTAGAGCCTCGGACACCATCGGCACCTAGGTGCTTCGATGTGCGGGAGCCT
65 GGCCCTTGGTCGTGC-AGAGCCTCGGACACCATCGGCACCTAGGTGCTTCGATGTGCGGGAGCCT
* * *
63832538 CGGACACCATCAGCAACCTAGGCCCGTGGTCTTGCGGGAGCCTCGGGCACCATTGGTAAAATAAG
129 CGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGTAAAAT-AG
* * *
63832603 CCCTTGGTCGTGCGAGAGCCTCAGCCACCATCGGCCCCTAGGTGCTTGGATGTGCGGGAGCCCCG
193 CCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCACG
* * * *
63832668 GACACCATTGGCAAACTAGGCCCTTGGTCCTGCGGGAGCCTCGGGCACCATCAGCAAAATGGGCC
258 GACACCATCGACAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCAGCAAAATAGGCC
* * * * * *
63832733 CTTGGTTGTGCTAGAGCCTCAGGCACCATCGGTACCTAG-GAGCTTGGATGTACGGGAGCCTCAG
323 CTAGGTCGTGCGAAAGCCTCAGGCACCATCGGTACAT-GTGAGCTCGGATGTACGGGAGCCTCAG
* * * * * * *
63832797 ACACCATCGGC-ACAT-GTGTGC-TCGGATGTGCCGGAGCCTCAGGG-ATCATCGGCACCTTGGT
387 ACACCATCGACAAAATAG-G-CCATCGGATGTGCCAGAGCCTC-GGGCACCATCGGCACCTAGGA
* ** * * * *
63832858 GCTATGATGTGTCGGAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTCATACGGGAGCCTCG
449 GCTATGATGCGTCGGAGCCTCAGACACCATCGACAAACTAGGCACGTGGTCATACGGGAGCCTCG
* * * **
63832923 TGCACCACCGACACCT-TCGTGCTTGGATGTGCGGGAACCTCGGACACCATCAGCAACCTAGGCC
514 GGCACCACCGACACATGT-GTGCTCGGATGTGCGGGAACCTCGG-CACCATC-GCAACCTAGGAG
* *
63832987 CTTGGACGTACGAGAGC
576 CTTGGATGTACGGGAGC
* * * * * * * *
63833004 CTCAGGCACCATCGACAAACTAAGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGTAAAATT
1 CTCAGACACCAGCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTC-GGCACCATCGGCAAAATA
* *
63833069 GGCCCTTGGTCGTGCGAGAGCCTC-GACCACCATCGGCACCTAGGTGCTTGGATGTGCAGGAGCC
65 GGCCCTTGGTCGTGC-AGAGCCTCGGA-CACCATCGGCACCTAGGTGCTTCGATGTGCGGGAGCC
* * **
63833133 ACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGCAACCTAG
128 TCGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGTAAAATAG
* * * * *
63833198 ACCCTTGGTCGTGCTAGAGCCTCGGGCACTATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTC
193 -CCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCAC
* * * * * **
63833263 GGACACCATCGACAAACTAGGGCTTTGGTCTTGC-GGAGCCTCGGGCACTATCGGCTACCTAGGC
257 GGACACCATCGACAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCAGCAAAATAGGC
** * *
63833327 CCTAGGTCGTGCGAAAGCCTTGGGCACCATCGGTACATGTGCGCTCGGATGTCCGGGAGCCTCAG
322 CCTAGGTCGTGCGAAAGCCTCAGGCACCATCGGTACATGTGAGCTCGGATGTACGGGAGCCTCAG
* * * *
63833392 GCACCATCGACAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCACCTAGGAGCT
387 ACACCATCGACAAAATAGGCCATCGGATGTGCCAGAGCCTCGGGCACCATCGGCACCTAGGAGCT
* * * * *
63833457 TTGATGCGTGGGAGCCTCAGACACCATCGACAAACTAGGCACGTGGTCTTGCGGGAGTCTCGGGC
452 ATGATGCGTCGGAGCCTCAGACACCATCGACAAACTAGGCACGTGGTCATACGGGAGCCTCGGGC
* * * * * *
63833522 ACCATCGGCAGATGTGTGCTCGGATGTGCGGGAGCCTCAGGCACCATCGGC-ACCTTGGTGCTAT
517 ACCACCGACACATGTGTGCTCGGATGTGCGGGAACCTC-GGCACCATC-GCAACCTAGGAGCT-T
* *
63833586 -GATGTGCCGGAGC
579 GGATGTACGGGAGC
* * * ***
63833599 CTCAGACA-CTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGTGCACCATCGACACCTT
1 CTCAGACACCAG-CGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCG-GCACCATCGGCAAAAT
* * * ** * ** *
63833663 CGTG--CTTGGAT-GTGCGGAAACCTCGGACACCATCGGCAACCTAGGCCCTTTG-TCGTATGAG
64 AG-GCCCTTGG-TCGTGCAG-AGCCTCGGACACCATCGGC-ACCTAGGTGCTTCGAT-GTGCGGG
* * * **
63833724 AGCCTCGGGCACCATCGGCAAACTAAGG-CCTTGGTCATGCGGAAGCCTCGGGCACCATCAGTAA
124 AGCCTCGGACACCATCGGCAAACT-AGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGT-A
* * *
63833788 AAATTGGCCCTTGGTCGTGTGAGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCAGG
187 AAA-TAGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGG
* *
63833853 AGCCACGGACACCATCGACAAACCAGGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATC
251 AGCCACGGACACCATCGACAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATC
63833912 GGCATCACGG
Statistics
Matches: 1216, Mismatches: 240, Indels: 95
0.78 0.15 0.06
Matches are distributed among these distances:
593 1 0.00
594 30 0.02
595 252 0.21
596 685 0.56
597 146 0.12
598 100 0.08
599 2 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (592 bp):
CTCAGACACCAGCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGCACCATCGGCAAAATAG
GCCCTTGGTCGTGCAGAGCCTCGGACACCATCGGCACCTAGGTGCTTCGATGTGCGGGAGCCTCG
GACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGTAAAATAGCCC
TTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCACGGAC
ACCATCGACAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCAGCAAAATAGGCCCTA
GGTCGTGCGAAAGCCTCAGGCACCATCGGTACATGTGAGCTCGGATGTACGGGAGCCTCAGACAC
CATCGACAAAATAGGCCATCGGATGTGCCAGAGCCTCGGGCACCATCGGCACCTAGGAGCTATGA
TGCGTCGGAGCCTCAGACACCATCGACAAACTAGGCACGTGGTCATACGGGAGCCTCGGGCACCA
CCGACACATGTGTGCTCGGATGTGCGGGAACCTCGGCACCATCGCAACCTAGGAGCTTGGATGTA
CGGGAGC
Found at i:63833386 original size:468 final size:467
Alignment explanation
Indices: 63832405--63833654 Score: 1238
Period size: 468 Copynumber: 2.7 Consensus size: 467
63832395 GATGTACGGG
* * ** * *
63832405 AGCCTCAGACACCAGCGGCAA-ACTAGGCCCGT-GGTCTTGTGGGAGCCTCAGGCACCATCGGCA
1 AGCCTCAGACACCATCGGCAACA-TAGGCCC-TCGGTCATACGGGAGCCTCAGGCACCACCGACA
* * * * * *
63832468 AAATAGGCCCTTGG-TCGTACTAGAGCCTCGGACACCATCGGCACCTAGGTGCTTCGATGTGCGG
64 AAATAGGCCATTGGAT-GTGCGAGAACCTCGGACACCATCGGCACCTAGGAGCTTCGACGT-CGG
* *
63832532 GAGCCTC-GGACACCATC-AGCAACCTAGGCCCGTGGTCTTGCGGGAGCCTCGGGCACCATTGGT
127 GAGCCTCAGG-CACCATCGA-CAAACTAGGCCCGTGGTCTTGCGGGAGCCTCGGGCACCATCGGT
** * *
63832595 AAAATAAGCCCTTGGTCGTGCGAGAGCCTCAGCCACCATCGGCCCCTAGGTGCTTGGATGTGCGG
190 AAAATTGGCCCTTGGTCGTGCGAGAGCCTCAGCCACCATCGGCACCTAGGTGCTTGGATGTGCAG
* * *
63832660 GAGCCCCGGACACCATTGGCAAACTAGGCCCTTGGTCCTGCGGGAGCCTCGGGCACCATCAGCAA
255 GAGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCAGCAA
* * * * *
63832725 AATGGGCCCTTGGTTGTGCTAGAGCCTCAGGCACCATCGGTACCTAGGAGCTTGGATGTACGGGA
320 AATAGACCCTTGGTCGTGCTAGAGCCTCAGGCACCATCGGCACCAAGGAGCTTGGATGTACGGGA
* * *
63832790 GCCTCAGACACCATCGGCACATGTGTGCTCGGATGTGCCGGAGCCTCAGGGATCATCGGCACCTT
385 GCCTCAGACACCATCGACAAATGTGTGCTCGGATGTGCCGGAGCCTCAGGGATCATCGGCACCTA
** *
63832855 GGTGCTATGATGTGTCGG
450 GGCCCTATGATGTGTCGA
** * * *
63832873 AGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTCATACGGGAGCCTC-GTGCACCACCGACAC
1 AGCCTCAGACACCATCGGCAACATAGGCCCTCGGTCATACGGGAGCCTCAG-GCACCACCGACAA
** * * * ** * *
63832937 CTTCGTG-C-TTGGATGTGCGGGAACCTCGGACACCATCAGCAACCTAGGCCCTTGGACGTACGA
65 AATAG-GCCATTGGATGTGCGAGAACCTCGGACACCATCGGC-ACCTAGGAGCTTCGACGT-CGG
* * * *
63833000 GAGCCTCAGGCACCATCGACAAACTAAGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGTAA
127 GAGCCTCAGGCACCATCGACAAACTAGGCCCGTGGTCTTGCGGGAGCCTCGGGCACCATCGGTAA
63833065 AATTGGCCCTTGGTCGTGCGAGAGCCTC-GACCACCATCGGCACCTAGGTGCTTGGATGTGCAGG
192 AATTGGCCCTTGGTCGTGCGAGAGCCTCAG-CCACCATCGGCACCTAGGTGCTTGGATGTGCAGG
* ** *
63833129 AGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGCAAC
256 AGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCAGCAAA
* * * * *
63833194 CTAGACCCTTGGTCGTGCTAGAGCCTCGGGCACTATCGGCACCAAGGTGCTTGGATGTGCGGGAG
321 ATAGACCCTTGGTCGTGCTAGAGCCTCAGGCACCATCGGCACCAAGGAGCTTGGATGTACGGGAG
* * *
63833259 CCTCGGACACCATCGACAAACTAG-G-GCTTTGG-TCTTG-CGGAGCCTC-GGGCA-CTATCGGC
386 CCTCAGACACCATCGACAAA-T-GTGTGC-TCGGAT-GTGCCGGAGCCTCAGGG-ATC-ATCGGC
*
63833318 TACCTAGGCCCTA-GGTCGTG-CGAA
445 -ACCTAGGCCCTATGAT-GTGTCG-A
** * * * * * *
63833342 AGCCTTGGGCACCATCGG-TACAT-GTGCGCTCGGAT-GTCCGGGAGCCTCAGGCACCATCGACA
1 AGCCTCAGACACCATCGGCAACATAG-GCCCTCGG-TCATACGGGAGCCTCAGGCACCACCGACA
* * * * *
63833404 AAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCACCTAGGAGCTTTGATGCGT-GG
64 AAATAGGCCATTGGATGTGCGAGAACCTCGGACACCATCGGCACCTAGGAGCTTCGA--CGTCGG
* * * *
63833468 GAGCCTCAGACACCATCGACAAACTAGGCACGTGGTCTTGCGGGAGTCTCGGGCACCATCGG-CA
127 GAGCCTCAGGCACCATCGACAAACTAGGCCCGTGGTCTTGCGGGAGCCTCGGGCACCATCGGTAA
* * * * *
63833532 GATGTGTG--CTCGGAT-GTGCGGGAGCCTCAGGCACCATCGGCACCTTGGTGCTAT-GATGTGC
192 AAT-TG-GCCCTTGG-TCGTGCGAGAGCCTCAGCCACCATCGGCACCTAGGTGCT-TGGATGTGC
* * * ** * *
63833593 CGGAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGTGCACCATC
253 AGGAGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATC
63833655 GACACCTTCG
Statistics
Matches: 644, Mismatches: 108, Indels: 61
0.79 0.13 0.08
Matches are distributed among these distances:
467 133 0.21
468 442 0.69
469 65 0.10
470 4 0.01
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (467 bp):
AGCCTCAGACACCATCGGCAACATAGGCCCTCGGTCATACGGGAGCCTCAGGCACCACCGACAAA
ATAGGCCATTGGATGTGCGAGAACCTCGGACACCATCGGCACCTAGGAGCTTCGACGTCGGGAGC
CTCAGGCACCATCGACAAACTAGGCCCGTGGTCTTGCGGGAGCCTCGGGCACCATCGGTAAAATT
GGCCCTTGGTCGTGCGAGAGCCTCAGCCACCATCGGCACCTAGGTGCTTGGATGTGCAGGAGCCA
CGGACACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCAGCAAAATAGA
CCCTTGGTCGTGCTAGAGCCTCAGGCACCATCGGCACCAAGGAGCTTGGATGTACGGGAGCCTCA
GACACCATCGACAAATGTGTGCTCGGATGTGCCGGAGCCTCAGGGATCATCGGCACCTAGGCCCT
ATGATGTGTCGA
Found at i:63833600 original size:212 final size:212
Alignment explanation
Indices: 63833168--63833782 Score: 492
Period size: 212 Copynumber: 2.9 Consensus size: 212
63833158 CTTGGTCTTG
* * * ** * *
63833168 CGGGAGCCTCGGGCACCATTGGCAACCTAGACCCTTGGTCGTGCTAGAGCCTCGGGCACTATCGG
1 CGGGAGCCTCAGGCACCATCGACAAAATAGACCATTGGTCGTGCTAGAGCCTCGGGCACCATCGG
* * * **
63833233 CACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGGCTTTGGTCTTGCG
66 CACCAAGGAGCTTGGATGCGCGGGAGCCTCAGACACCATCGACAAACTAGGGCCGTGGTCTTGCG
* * ** *
63833298 GAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGCGAAAGCCTTGGGCACCATCGGTAC
131 GAGCCTCGGGCACCATCGGCTACATAGGCCCTAGGTCGTGCGAAAGCCTCAGGCACCATCGGCAC
*
63833363 ATGTGCGCTCGGATGTC
196 ATGTGCGCTAGGATGTC
* *
63833380 CGGGAGCCTCAGGCACCATCGACAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGG
1 CGGGAGCCTCAGGCACCATCGACAAAATAGACCATTGGTCGTGCTAGAGCCTCGGGCACCATCGG
* * *
63833445 CACCTAGGAGCTTTGATGCGTGGGAGCCTCAGACACCATCGACAAACTA-GGCACGTGGTCTTGC
66 CACCAAGGAGCTTGGATGCGCGGGAGCCTCAGACACCATCGACAAACTAGGGC-CGTGGTCTTGC
* * ** * **
63833509 GGGAGTCTCGGGCACCATCGGC-AGAT-GTGTGCTCGGAT-GTGCGGGAGCCTCAGGCACCATCG
130 -GGAGCCTCGGGCACCATCGGCTACATAG-GCCCTAGG-TCGTGCGAAAGCCTCAGGCACCATCG
* * *
63833571 GCACCT-TGGTGCTATGATGTGC
192 GCACATGT-GCGCTAGGATGT-C
* ** * ** * * * ** * *
63833593 C-GGAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGTGCACCATCGA
1 CGGGAGCCTCAGGCACCATCGACAAAATAGACCATTGGTCGTGCTAGAGCCTCGGGCACCATCGG
*** * * * * * * * * * *
63833657 CACCTTCGTGCTTGGATGTGCGGAAACCTCGGACACCATCGGCAACCTAGGCCCTTTGTCGTATG
66 CACCAAGGAGCTTGGATGCGCGGGAGCCTCAGACACCATCGACAAACTAGGGCCGTGGTC-T-TG
* * * * * *
63833722 -AGAGCCTCGGGCACCATCGGC-AAACTAAGG-CCTTGGTCATGCGGAAGCCTCGGGCACCATC
129 CGGAGCCTCGGGCACCATCGGCTACA-T-AGGCCCTAGGTCGTGCGAAAGCCTCAGGCACCATC
63833783 AGTAAAAATT
Statistics
Matches: 322, Mismatches: 68, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
211 5 0.02
212 263 0.82
213 50 0.16
214 3 0.01
215 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (212 bp):
CGGGAGCCTCAGGCACCATCGACAAAATAGACCATTGGTCGTGCTAGAGCCTCGGGCACCATCGG
CACCAAGGAGCTTGGATGCGCGGGAGCCTCAGACACCATCGACAAACTAGGGCCGTGGTCTTGCG
GAGCCTCGGGCACCATCGGCTACATAGGCCCTAGGTCGTGCGAAAGCCTCAGGCACCATCGGCAC
ATGTGCGCTAGGATGTC
Found at i:63833729 original size:170 final size:169
Alignment explanation
Indices: 63831366--63837564 Score: 3512
Period size: 170 Copynumber: 36.5 Consensus size: 169
63831356 CGGGAGCCTC
* * ** * * * * * * *
63831366 GGTGCTTGGATGTACGGAAGCGACGGGCACCATCGTCAAAATAGGCTCTTGGTCGTGTGAGACCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* * * ** * * **
63831431 TCGGCCACCATCGACACCTAGGTGCTTATATGTGCAGGAGCCTCAGACACTGTCGAG-AACCTAG
66 TCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCG-GCAACCTAG
* * * *
63831495 GCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTT
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * * * *
63831536 GGTGCTTGGATGTGCGAGAACCACAGACACCAACGACAACCTAGGCCCTTAGTCGTGCGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* * * * * *
63831601 TCGGGCACCATCGGTACCTAGGCGCTCGGATGTGCGGGAGCCCCAGACACCATCGGCAAACTAAG
66 TCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
* * * *
63831666 TCCTTGGTCATGCGAGAGCCTCGGGCGCTATCGGCACCTCA
131 CCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACCT-A
* ** * * * *
63831707 -GTGCTTCGATGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCTCTTGGTCGTGCGTGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* * * * * * * * * * *
63831771 TCGGGCACCATCGGTAGCTGGGTGCTCGGATGTGCAGAAGACTCAGACACCATCGGCAAACAAGG
66 TCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
* * * *
63831836 CCCTTGGTCTTGCGGGAGACTCGGGCATCATCGGCTACCTA
131 CCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
** *** * * *** **
63831877 GGCCCTTGG-TCGTGCAAAAGCCTC-GAGCACCACCGGC-ACCT-GTGTGTTTGGAT-GCACG-G
1 GGTGCTTGGAT-GTGCGGGAGCCTCAGA-CACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGAG
* * * * *
63831936 AGCCTCGGACACCATCGGCAAACTAGGC-CTTCGG-TCTTGCGGGAGCCTCGGGCACCATCGG-T
62 AGCCTCGGGCACCATCGGC-ACCTAGGCGCTT-GGAT-GTGCGGGAGCCTCGGACACCATCGGCA
* ** * * * * **
63831998 ACCTCGGTGCTTCGACGTGGGGGAGCCTCGGGCACCATCGGCAAAATA
124 ACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
** * ** * * * * ** * *
63832046 GGCCCTTGG-TCGTACTAGAGCCTCGGGCACCATCAGC-ACCTAGGTACTTCGAT-GTGCGGGAG
1 GGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTT-GGTCGTGCGAGAG
* * * * * * * * * *
63832108 CCTCGGACACCATCAGCAAACTAGGCCCGTGG-TCTTGCGGGAGCCTTGGGCACCATAGGCAAAC
64 CCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * **
63832172 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGTAAAATA
127 TAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGG-CACCTA
* ** * * ** ** *
63832217 AGCCCTTGG-TCGTGCGAGAGCCTCAGCCACCATCGGC-CTCTAGGTGCTTGGAT-GTGCGGGAG
1 GGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAG
* * * * * * * * * * **
63832279 CCTTGGACACCATTGGCAGACTAGGCCCTTGG-TCCTGCTGGAGCCTTGGGCACCATCAGCAAAA
64 CCTCGGGCACCATCGGCA-CCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACC
** * *
63832343 TAGGCCCTTGGTTTTGCTAGAGCCTCGGGCACCATCGACACCTA
127 TAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * * * *
63832387 GGAGCTTGGATGTACGGGAGCCTCAGACACCAGCGGCAAACTAGGCCCGTGGTCTTGTGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* ** * * **
63832452 TCAGGCACCATCGGCAAAATAGGCCCTTGG-TCGTACTAGAGCCTCGGACACCATCGGC-ACCTA
66 TCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTA
** * * *
63832515 GGTGCTTCGAT-GTGCGGGAGCCTCGGACACCATCAGCAACCTA
129 GGCCCTT-GGTCGTGCGAGAGCCTCGG-CACCATCGGC-ACCTA
** * * * * * * * *
63832558 GGCCCGTGG-TCTTGCGGGAGCCTCGGGCACCATTGGTAAAATAAGCCCTTGGTCGTGCGAGAGC
1 GGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
* * * * * * *
63832622 CTCAGCCACCATCGGCCCCTAGGTGCTTGGATGTGCGGGAGCCCCGGACACCATTGGCAAACTAG
65 CTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
* * * ** *
63832687 GCCCTTGGTCCTGCGGGAGCCTCGGGCACCATCAGCAAAATG
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
** * ** * * * ** * *
63832729 GGCCCTTGGTTGTGCTAGAGCCTCAGGCACCATCGG-TACCTAGGAGCTTGGAT-GTACGGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGC
* * * * * * * *
63832792 CTCAGACACCATCGGCACAT-GTGTGCTCGGATGTGCCGGAGCCTCAGG-GATCATCGGC-ACCT
65 CTCGGGCACCATCGGCACCTAG-GCGCTTGGATGTGCGGGAGCCTC-GGACACCATCGGCAACCT
* ** * * **
63832854 TGGTGCTATGAT-GTGTCG-GAGCCTCAGACACTGTCGGCAACCTA
128 AGGCCCT-TGGTCGTG-CGAGAGCCTC-GGCACCATCGGC-ACCTA
** * * * * * * ** ** *
63832898 GGCCCTTGG-TCATACGGGAGCCTC-GTGCACCACCGAC-ACCTTCGTGCTTGGAT-GTGCGGGA
1 GGTGCTTGGAT-GTGCGGGAGCCTCAG-ACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGA
* * * * * * * * *
63832959 ACCTCGGACACCATCAGCAACCTAGGCCCTTGGACGTACGAGAGCCTCAGG-CACCATCGACAAA
63 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGATGTGCGGGAGCCTC-GGACACCATCGGCAAC
* * * * ** *
63833023 CTAAGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGTAAAATT
126 CTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGG-CACCTA
** * * **
63833069 GGCCCTTGG-TCGTGCGAGAGCCTC-GACCACCATCGGC-ACCTAGGTGCTTGGAT-GTGC-AGG
1 GGTGCTTGGAT-GTGCGGGAGCCTCAGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGA-G
* * * * * * *
63833129 AGCCACGGACACCATCGGCAAACTAGGCCCTTGG-TCTTGCGGGAGCCTCGGGCACCATTGGCAA
62 AGCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAA
* * * *
63833193 CCTAGACCCTTGGTCGTGCTAGAGCCTCGGGCACTATCGGCACCAA
125 CCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * *
63833239 GGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGGCTTTGGTCTTGCG-GAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* * * ** * * * *
63833303 TCGGGCACTATCGGCTACCTAGGCCCTAGG-TCGTGCGAAAGCCTTGGGCACCATCGG-TACAT-
66 TCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * * * **
63833365 GTGCGCTCGGAT-GTCCGGGAGCCTCAGGCACCATCGACAAAATA
129 G-GCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
* * ** * * * * * *
63833409 GG-CCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGAGCTTTGATGCGTG-G-GA
1 GGTGC-TTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGG-CCCTTGGT-CGTGCGAGA
* * * * * * * * *
63833470 GCCTCAGACACCATCGACAAACTAGGCACGTGG-TCTTGCGGGAGTCTCGGGCACCATCGGCAGA
63 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCA-A
** * * *
63833534 --T-GTGTGCTCGGAT-GTGCGGGAGCCTCAGGCACCATCGGCACCTT
125 CCTAG-GCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* ** * * *
63833578 GGTGCTAT-GATGTGCCGGAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGC
1 GGTGCT-TGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
* * ** * * *
63833642 CTCGTGCACCATCGACACCTTCGTGCTTGGATGTGCGGAAACCTCGGACACCATCGGCAACCTAG
65 CTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
* ** *
63833707 GCCCTTTGTCGTATGAGAGCCTCGGGCACCATCGGCAAACTAA
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC-ACCT-A
* * * * * ** * * *
63833750 GG-CCTTGG-TCATGCGGAAGCCTCGGGCACCATCAGTAAAAATTGGCCCTTGGTCGTGTGAGAG
1 GGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATC-GGCAAACTAGGCCCTTGGTCGTGCGAGAG
* * * * *
63833813 CCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCAGGAGCCACGGACACCATCGACAAACC-
64 CCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGC-AACCT
* * * *
63833877 AGGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATCGGCATC-A
128 AGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * * *
63833919 CGGTGCTTGGATATACGGGAGCCTC-GAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAG
1 -GGTGCTTGGATGTGCGGGAGCCTCAG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAG
** * * * ** * * * *
63833983 CCTCGGGCATTATCGGTTACCTAGGCCCTAGG-TCGTGCGAAAGCCTTGGGCACCATCGG-TACA
64 CCTCGGGCACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * *
63834046 T-GTGCGCTCGGAT-GTCCGGGAGCCTCGGGCACCATCGGTACCTCA
127 TAG-GCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGGCACCT-A
* * * ** * ** * *
63834091 -GTGCTAT-GATGTCCGGGAGCCTCGGACACTATCACCAACCTAGGCAATTGGTCGTGCCAAAGC
1 GGTGCT-TGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
** * ** * *
63834154 CTCGGGCACCATCGGCAAAATAGGC-CATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-GCCT
65 CTCGGGCACCATCGGC-ACCTAGGCGC-TTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCT
** * * * * * *
63834217 AGGAGCTTGGAT-GCGCGGGAGCATCAGACACCATCGACAAACTA
128 AGGCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
* * * * * ** * *
63834261 GGCCTGTCCT--CT-TGCGGGAGCCTCGGGCACCATCGGCACA-T-GTGTGCTCGGAT-GTGCGG
1 GG--TG-CTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGA
* * * * **
63834320 GAGCCTCAGGCACCATCGGCACCTCGGTGCTAT-GATGTGCCGGAGCCTCGGACACTGTCGGCAA
61 GAGCCTCGGGCACCATCGGCACCTAGGCGCT-TGGATGTGCGGGAGCCTCGGACACCATCGGCAA
* * * * *
63834384 CCTAGGCCCTTGGTCATGCGGGAGCCTCAAGCACCATCGACACCTT
125 CCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * *
63834430 TGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* * * *
63834495 TCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGCCTC-GACCACCATTGGCAACCTAA
66 TCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAG
63834559 G-CC-----C-T---AGAGCCTCGGCCACCATCGGCACCTA
130 GCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCACCTA
* * * *
63834590 GGTGCTTGGATGTGCGGGAGCCACAGACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
** * * * * * * *
63834655 TCGGGTGCTATCGGCACCTAGGTGCTTCGATGTACGGGAGCCTC-AAGCACCATCGGTAACGTAG
66 TCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAG
* * *
63834719 GCCCTTAGTCGTGCTAGAGCCTGGGGCACCATCGGCACCTA
130 GCCCTTGGTCGTGCGAGAGCCT-CGGCACCATCGGCACCTA
* * * *
63834760 GGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCCTGCGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
** * * ** * *
63834825 TCGGGCACCATTTGCTATCTAGGCCCTTGG-TCGTGCGAAAGCCTCGGGCACCATCGGC-ACAT-
66 TCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * * * *
63834887 GTGCGCTCAGAT-GTCCGGGAGCCTCGGACACTATCGGCAACCTA
129 G-GCCCT-TGGTCGTGCGAGAGCCTCGG-CACCATCGGC-ACCTA
** * * * ** *
63834931 GGCCCTTGG-TCGTGAC-GGAGCCTC-GAGCACCATCGACAACCTTGGCCCTCAGTCGTACGAGA
1 GGTGCTTGGAT-GTG-CGGGAGCCTCAGA-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGA
** * * * * *
63834993 GCCTTAGGCACCATCGACAAACTAAGCCCTTGG-TCGAGCGGGAGCCTCGTG-CACCATCGGCAA
63 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCG-GACACCATCGGCAA
** * *
63835056 AATAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTA
125 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCACCTA
* *
63835102 GGGGCTTGGATGTGCGGGAGCCTC-GAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCAG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
* * * * *
63835166 CTCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAG
65 CTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
* *
63835231 GCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTA
130 GCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCACCTA
* *
63835272 GGGGCTTGGATGTGCGGGAGCCTC-GAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCAG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
* * * * *
63835336 CTCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAG
65 CTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
* *
63835401 GCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTA
130 GCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCACCTA
* *
63835442 GGGGCTTGGATGTGCGGGAGCCTC-GAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCAG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
* * * * * **
63835506 CTCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGTAAAATAG
65 CTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
*
63835571 GCCCTTGGTCGTGCGAGAGCCTCGACCACCATCGGCACCTA
130 GCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCACCTA
* * * * *
63835612 AGTGCTTGGATGTGCGGGA-CCGTTCA-ACACCATCGGTAACCTTGGCCCTTGGTCGTGCGGGAG
1 GGTGCTTGGATGTGCGGGAGCC--TCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAG
*** * * * * * * * * **
63835675 CCTCAAACCCCATTGGCAACCTTGGCCCTTGG-TCGTGCGAGAGCCTCGGGCTCCATCGGAAAAA
64 CCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACC
* *
63835739 TAGACCCTTGGTCGTGAGAGAGCCTCGGCCACCATCGGCACCTA
127 TAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCACCTA
* * *
63835783 GGTGCTTGGATGTGCGGGAGCCTC-GAACACCATCGGCAAACTAGGCCCTTGGTCCTGCAAGTGC
1 GGTGCTTGGATGTGCGGGAGCCTCAG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
* * * * * **
63835847 CTCGGGCACCATCGGCACCTCGGTGCTTTGATGTGCGGGAGCCTCGGGCACCATTGGCAAAATAG
65 CTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
*
63835912 GCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTA
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * * **
63835953 GGAGCTTGGATGTACGGGAGACTCAGAAACCATCGGCAAACTAGGCCCGTGGTATTGC-AGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA-GAGC
* * * * * * *
63836017 GTCAGGCACCATCGGTACAT-GTGCGCTCGGATGTGTGGGAGCCT-GAGGCACCATCGGC-ACCT
65 CTCGGGCACCATCGGCACCTAG-GCGCTTGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCT
** * *
63836079 CAGTG---TTGTGAT-GTGCG-GCAGCCTCGGACACTGTCGACAACCTT
128 -AG-GCCCTTG-G-TCGTGCGAG-AGCCTCGG-CACCATCGGC-ACCTA
* * * *
63836123 CGTGCTTGGATGTGCAGGAACCTCGGACACCATCGG-AAACCTAGGCCCTTGGTCGTGCGAGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAA-CTAGGCCCTTGGTCGTGCGAGAGC
* * * * * * **
63836187 CTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGTGGGAGCCTTGGGCACCATCGGCAAAAT
65 CTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCT
* * * * *
63836251 TGGCCCTTGTTCGTGCTAGAGCCTCGACCACCATCGGCACCGA
128 AGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCACCTA
* * * * * * * * *
63836294 GGTGCTTGGATGTGCGCGAGCCACGGACACTATCGGTAACCTAGGCCTTTGGTCATGCTAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* * * * * *
63836359 TGGGGCACCATCGGCACCTA-GCTGCTTGGATGTACGGGAGACTCAGACACCATCGGTAAACTAG
66 TCGGGCACCATCGGCACCTAGGC-GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
* * * * * *
63836423 GCCTTTGGTCTTGCGGGAGCCTCAAGCACCATCGACACCTT
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * *
63836464 TGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* * * **
63836529 TCGGACACCATCGGCAAACTAAGC-CATTGG-TCGTGCGGGAGCCTCGTG-CACCATCGGCAAAA
66 TCGGGCACCATCGGC-ACCTAGGCGC-TTGGAT-GTGCGGGAGCCTCG-GACACCATCGGCAACC
* *
63836591 TTGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTA
127 TAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCACCTA
* * * *
63836635 GGTGCTTGGATGTGCGAGAGCCACAGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* * * * * * * *
63836700 TCGGGCGCTATCGGCACCTAGGTGCTTCGATGTGTGGGAGCCTC-AAGCACCATCGGTAACGTAG
66 TCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAG
* * *
63836764 GCCCTTAGTCGTGCTAGAGCCTGGGGCACCATCGGCACCTA
130 GCCCTTGGTCGTGCGAGAGCCT-CGGCACCATCGGCACCTA
* * * *
63836805 GGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCCTGCGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
* ** * * *
63836870 TCGGGCACCATCGGCACAT-GTGCGCTCAGATGTCCGGGAGCCTCAGACACTATCGGCAACCTAG
66 TCGGGCACCATCGGCACCTAG-GCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
* * * *
63836934 GCCATTGGTCGTGACG-GAGCATCGAGCACCATCGACAACCTT
130 GCCCTTGGTCGTG-CGAGAGCCTCG-GCACCATCGGC-ACCTA
** ** * * * * * * *
63836976 GGCCCTCAG-TCGTACGAGAGCCTTAGGCACCATCGGCAAACTAAGCCCTTGGTCGAGCGGGAGC
1 GGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
* ** * * * * *
63837040 CTCGTGCACCATCGGCAAAATAGGCCCTTGG-TCGTACGAGAGCCTCGGCCACCATCAGC-ACCT
65 CTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCT
** * * * *
63837103 AGGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGACAAACTA
128 AGGCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
* * * * * * * ** * *
63837147 GG-GCCTCGG-TCTTACGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 GGTG-CTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTT-GGTCGTGCGAGA
* * * **
63837208 GCCTCGGGCACCATCGGCACCTAGGTGCTTTGATGTGTGGGAGCCTCGGACACCATCGGCAAATT
63 GCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCT
* * *
63837273 AGGCCTTTGGTCTTGCGAGAGCCTCGGGCACTATCGGCTACCTA
128 AGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
** * ** * * * * * **** ** *
63837317 GGCCCTTGG-TCGTGTGAAAGCCTCGGGCACCATTGGTACA-T-GGCTAGCGGAGGTTCGAGAGC
1 GGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
* ** * * * *
63837379 CCCGGG-ATTTATCGGCACCTCGGTGCTAT-AATGTGCGGGAGCCTCGGACACTATCGGCAACCT
65 CTCGGGCA-CCATCGGCACCTAGGCGCT-TGGATGTGCGGGAGCCTCGGACACCATCGGCAACCT
* * * *
63837442 AGGCCCTTGGTCGTGCCG-GAGCCTCAAGCACCATTGACAACCTT
128 AGGCCCTTGGTCGTG-CGAGAGCCTC-GGCACCATCGGC-ACCTA
** * * * * * * *
63837486 GGCCCTTTG-TCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCTTTGGTCGTGCGGGAGC
1 GGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGC
63837550 CTCGGGCACCATCGG
65 CTCGGGCACCATCGG
63837565 TAAAATAGGC
Statistics
Matches: 4763, Mismatches: 1041, Indels: 449
0.76 0.17 0.07
Matches are distributed among these distances:
159 1 0.00
160 127 0.03
161 2 0.00
163 1 0.00
164 1 0.00
166 3 0.00
167 3 0.00
168 16 0.00
169 548 0.12
170 2412 0.51
171 1431 0.30
172 204 0.04
173 13 0.00
174 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (169 bp):
GGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC
TCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
CCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCACCTA
Found at i:63833815 original size:44 final size:43
Alignment explanation
Indices: 63833683--63833826 Score: 132
Period size: 43 Copynumber: 3.3 Consensus size: 43
63833673 TGTGCGGAAA
* * * * * *
63833683 CCTCGGACACCATCGGCAACCTAGGCCCTTTGTCGTATGAGAG
1 CCTCGGGCACCATCAGCAAACAAGGCCCTTGGTCGTGTGAGAG
* * *
63833726 CCTCGGGCACCATCGGCAAACTAAGG-CCTTGGTCATGCG-GAAG
1 CCTCGGGCACCATCAGCAAAC-AAGGCCCTTGGTCGTGTGAG-AG
*
63833769 CCTCGGGCACCATCAGTAAA-AATTGGCCCTTGGTCGTGTGAGAG
1 CCTCGGGCACCATCAGCAAACAA--GGCCCTTGGTCGTGTGAGAG
*
63833813 CCTCGGCCACCATC
1 CCTCGGGCACCATC
63833827 GGCACCTAGG
Statistics
Matches: 83, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 50 0.60
44 29 0.35
45 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (43 bp):
CCTCGGGCACCATCAGCAAACAAGGCCCTTGGTCGTGTGAGAG
Found at i:63834621 original size:75 final size:75
Alignment explanation
Indices: 63834489--63834638 Score: 212
Period size: 75 Copynumber: 2.0 Consensus size: 75
63834479 TGGTCGTACG
* * * *
63834489 AGAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGCCTCGACCACCATTGGCAA
1 AGAGCCTCGGCCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCACGACCACCATCGGCAA
*
63834554 CCTAAGCCCT
66 ACTAAGCCCT
* *
63834564 AGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCACAGA-CACCATCGGCA
1 AGAGCCTCGGCCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCAC-GACCACCATCGGCA
*
63834628 AACTAGGCCCT
65 AACTAAGCCCT
63834639 TGGTCTTGTG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
75 64 0.97
76 2 0.03
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.15
Consensus pattern (75 bp):
AGAGCCTCGGCCACCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCACGACCACCATCGGCAA
ACTAAGCCCT
Found at i:63836996 original size:341 final size:335
Alignment explanation
Indices: 63831366--63837564 Score: 3136
Period size: 341 Copynumber: 18.2 Consensus size: 335
63831356 CGGGAGCCTC
* * ** * * * * ** *
63831366 GGTGCTTGGATGTACGGAAGCGACGGGCACCATCGTCAAAATAGGCTCTTGGTCGTGTGAGACCC
1 GGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
* * * * * * * ** **
63831431 TCGGCCACCATCGACACCTAGGTGCTTATATGTGCAGGAGCCTCAGACACTGTCGAG-AACCTAG
65 TCGGGCACCATCGGCACCTAGGCGCTT-GATGTGCGGGAGCCTCGGGCACCATCG-GCAAAATAG
* * * * * * *
63831495 GCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGAGAACCAC
128 GCCCTTGGTCGTGC-GGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTC
* * * * * * *
63831560 AGACACCAACGACAACCTAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGTACCTAGGCG
192 AGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTG
* * * * * *
63831625 CTCGGATGTGCGGGAGCC-CCAGACACCATCGGCAAACTAAGTCCTTGGTCATGCGAGAGCCTCG
257 CT-TGATGTGCGGGAGCCTCAAG-CACCATCGG-TAACTAGGCCCTTGGTCGTGCGAGAGCCTCG
* *
63831689 GGCGCTATCGGCACCTCA
319 GGCACCATCGGCACCT-A
* * * * * * *
63831707 -GTGCTTCGATGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCTCTTGGTCGTGCGTGAGCC
1 GGTGCTTGGATGTGCGGGAGCC-TCGACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
* * * * * * * * * *
63831771 TCGGGCACCATCGGTAGCTGGGTGCTCGGATGTGCAGAAGACTCAGACACCATCGGCAAACA-AG
65 TCGGGCACCATCGGCACCTAGGCGCT-TGATGTGCGGGAGCCTCGGGCACCATCGGCAAA-ATAG
* * * * ** ***
63831835 GCCCTTGGTCTTGCGGGAGACTCGGGCATCATCGGCTACCTAGGCCCTTGG-TCGTGCAAAAGCC
128 GCCCTTGGTCGTGC-GGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCC
* * *** * * * *
63831899 TC-GAGCACCACCGGC-ACCT-GTGTGTTTGG--ATGCACGGAGCCTCGGACACCATCGGCAAAC
190 TCAGA-CACCATCGGCAAACTAG-GCCCTTGGTCGTGC-GGGAGCCTCGGGCACCATCGGC-ACC
* * * ** * * ** * * * *
63831959 TAGG-CCTTCGGTCTTGCGGGAGCCTCGGGCACCATCGGTACCTCGGTGCTTCGACGTGGGGGAG
251 TAGGTGCTT-GAT-GTGCGGGAGCCTCAAGCACCATCGGTAACTAGGCCCTTGGTCGTGCGAGAG
**
63832023 CCTCGGGCACCATCGGCAAAATA
314 CCTCGGGCACCATCGGC-ACCTA
** * ** * * * ** * * *
63832046 GGCCCTTGG-TCGTACTAGAGCCTCGGGCACCATCAGC-ACCTAGGTACTTCGAT-GTGCGGGAG
1 GGTGCTTGGAT-GTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTT-GGTCGTACGAGAG
* * * * * * * * * *
63832108 CCTCGGACACCATCAGCAAACTAGGCCCGTGGTCTTGCGGGAGCCTTGGGCACCATAGGCAAACT
63 CCTCGGGCACCATCGGC-ACCTAGGCGCTTGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAAT
* * * * ** * ** *
63832173 AAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGTAAAATAAGCCCTTGG-TCGTGCGAGAG
126 AGGCCCTTGGTCGTGC-GGAGCCTCGGCCACCATCGG-CACCTAGGTGCTTGGAT-GTGCGGGAG
* ** ** * * * *
63832237 CCTCAGCCACCATCGGC-CTCTAGGTGCTTGGAT-GTGCGGGAGCCTTGGACACCATTGGCAGAC
188 CCTCAGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCA-CC
** * * * *** ** * ** *
63832300 TAGGCCCTTGGTCCTGCTGGAGCCTTGGGCACCATCAGCAAAATAGGCCCTTGGTTTTGCTAGAG
251 TAGGTGCTTGAT-GTGCGGGAGCCTCAAGCACCATC-GGTAACTAGGCCCTTGGTCGTGCGAGAG
*
63832365 CCTCGGGCACCATCGACACCTA
314 CCTCGGGCACCATCGGCACCTA
* * * * * ** *
63832387 GGAGCTTGGATGTACGGGAGCCTCAGACACCAGCGGCAAACTAGGCCCGTGGTCTTGTGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
* ** * * * ** * **
63832452 TCAGGCACCATCGGCAAAATAGGCCCTTGGTCGTACTAGAGCCTCGGACACCATCGGC-ACCTAG
65 TCGGGCACCATCGGC-ACCTAGGCGCTTGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
** * * * ** * *
63832516 GTGCTTCGAT-GTGCGGGAGCCTCGGACACCATCAGCAACCTAGGCCCGTGG-TCTTGCGGGAGC
128 GCCCTT-GGTCGTGC-GGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGC
* * * * * * * * * *
63832579 CTCGGGCACCATTGGTAAAATAAGCCCTTGGTCGTGCGAGAGCCTCAGCCACCATCGGCCCCTAG
189 CTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAG
** * * * *
63832644 GTGCTTGGATGTGCGGGAGCC-CCGGACACCATTGGCAAACTAGGCCCTTGGTCCTGCGGGAGCC
254 GTGCTT-GATGTGCGGGAGCCTCAAG-CACCATCGG-TAACTAGGCCCTTGGTCGTGCGAGAGCC
* ** *
63832708 TCGGGCACCATCAGCAAAATG
316 TCGGGCACCATCGGC-ACCTA
** * ** * * * ** *
63832729 GGCCCTTGGTTGTGCTAGAGCCTCAGGCACCATCGG-TACCTAGGAGCTTGGAT-GTACGGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGG-TCGTACGAGAGC
* * * * * * * **
63832792 CTCAGACACCATCGGCACAT-GTGTGCTCGGATGTGCCGGAGCCTCAGGG-ATCATCGGC-ACCT
64 CTCGGGCACCATCGGCACCTAG-GCGCT-TGATGTGCGGGAGCCTC-GGGCACCATCGGCAAAAT
* ** * * * ** ** * *
63832854 TGGTGCTATGAT-GTGTCGGAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGG-TCATACGGGA
126 AGGCCCT-TGGTCGTG-CGGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
* * * * ** ** * * *
63832917 GCCTC-GTGCACCACCGAC-ACCTTCGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCAGCAA
187 GCCTCAG-ACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-A
** * * * * ** * *
63832979 CCTAGGCCCTTGGACGTACGAGAGCCTCAGGCACCATCGACAAACTAAGCCCTTGGTCGTGCGGG
249 CCTAGGTGCTT-GATGTGCGGGAGCCTCAAGCACCATCG-GTAACTAGGCCCTTGGTCGTGCGAG
* * ** *
63833044 AACCTCGGGCACCATCGGTAAAATT
312 AGCCTCGGGCACCATCGG-CACCTA
** * * ** *
63833069 GGCCCTTGG-TCGTGCGAGAGCCTCGACCACCATCGGC-ACCTAGGTGCTTGGAT-GTGC-AGGA
1 GGTGCTTGGAT-GTGCGGGAGCCTCGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTACGA-GA
* * * * * * * **
63833130 GCCACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGCAACC
62 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAA
* * * * *
63833195 TAGACCCTTGGTCGTGCTAGAGCCTCGGGCACTATCGGCACCAAGGTGCTTGGATGTGCGGGAGC
125 TAGGCCCTTGGTCGTGC-GGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
* * * * * *
63833260 CTCGGACACCATCGACAAACTAGGGCTTTGGTCTTGC-GGAGCCTCGGGCACTATCGGCTACCTA
189 CTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTA
** * * ** *** * * * *
63833324 GGCCCTAGGTCGTGCGAAAGCCTTGGGCACCATCGGT-AC-ATGTGCGCTCGGAT-GTCCGGGAG
253 GGTGCTTGAT-GTGCGGGAGCCTCAAGCACCATCGGTAACTA-G-GCCCTTGG-TCGTGCGAGAG
* * **
63833386 CCTCAGGCACCATCGACAAAATA
314 CCTCGGGCACCATCGGC-ACCTA
* * ** * * * * * *
63833409 GG-CCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGAGCTTTGATGCGT--GGGA
1 GGTGC-TTGGATGTGCGGGAGCCTC-GACACCATCGGCAAACTAGG-CCCTTGGT-CGTACGAGA
* * * * * * * * * *
63833470 GCCTCAGACACCATCGACAAACTAGGCACGTGGTCTTGCGGGAGTCTCGGGCACCATCGGC-AGA
62 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAA
** * * *
63833534 T-GTGTGCTCGGAT-GTGCGGGAGCCTCAGG-CACCATCGGCACCTTGGTGCTAT-GATGTGCCG
125 TAG-GCCCTTGG-TCGTGC-GGAGCCTC-GGCCACCATCGGCACCTAGGTGCT-TGGATGTGCGG
** * * * *
63833595 GAGCCTCAGACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGTGCACCATCGACAC
185 GAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
** * * * * * **
63833660 CTTCGTGCTTGGATGTGCGGAAACCTC-GGACACCATCGGCAACCTAGGCCCTTTGTCGTATGAG
250 CTAGGTGCTT-GATGTGCGGGAGCCTCAAG-CACCATCGGTAA-CTAGGCCCTTGGTCGTGCGAG
*
63833724 AGCCTCGGGCACCATCGGCAAACTAA
312 AGCCTCGGGCACCATCGGC-ACCT-A
* * * * ** * * **
63833750 GG-CCTTGG-TCATGCGGAAGCCTCGGGCACCATCAGTAAAAATTGGCCCTTGGTCGTGTGAGAG
1 GGTGCTTGGAT-GTGCGGGAGCCTC-GACACCATC-GGCAAACTAGGCCCTTGGTCGTACGAGAG
* * * * * * **
63833813 CCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCAGGAGCCACGGACACCATCGACAAACCA
63 CCTCGGGCACCATCGGCACCTAGGCGCTT-GATGTGCGGGAGCCTCGGGCACCATCGGCAAAATA
* * * * * *
63833878 GGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATCGGCATC-ACGGTGCTTGGATATACGGGAGCC
127 GGCCCTTGGTCGTGC-GGAGCCTCGGCCACCATCGGCACCTA-GGTGCTTGGATGTGCGGGAGCC
* * * ** *
63833942 TC-GAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCATTATCGGTTACCTA
190 TCAG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTA
** * * ** *** * * * *
63834006 GGCCCTAGGTCGTGCGAAAGCCTTGGGCACCATCGGT-AC-ATGTGCGCTCGGAT-GTCCGGGAG
253 GGTGCTTGAT-GTGCGGGAGCCTCAAGCACCATCGGTAACTA-G-GCCCTTGG-TCGTGCGAGAG
*
63834068 CCTCGGGCACCATCGGTACCTCA
314 CCTCGGGCACCATCGGCACCT-A
* * ** * ** * * *
63834091 -GTGCTAT-GATGTCCGGGAGCCTCGGACACTATCACCAACCTAGGCAATTGGTCGTGCCAAAGC
1 GGTGCT-TGGATGTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGC
** * ** ***
63834154 CTCGGGCACCATCGGCAAAATAGGC-CATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-GCCT
64 CTCGGGCACCATCGGC-ACCTAGGCGC-TT-GATGTGCGGGAGCCTCGGGCACCATCGGCAAAAT
** * * * * * * * *
63834217 AGGAGCTTGGAT-GCGCGGGAGCATCAGACACCATCGACAAACTAGGCCTGTCCT--CT-TGCGG
126 AGGCCCTTGG-TCGTGC-GGAGCCTCGGCCACCATCGGC-ACCTAGG--TG-CTTGGATGTGCGG
* * * ** * *
63834278 GAGCCTCGGGCACCATCGGCACA-T-GTGTGCTCGGAT-GTGCGGGAGCCTCAGGCACCATCGGC
185 GAGCCTCAGACACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* * * ** * *
63834340 ACCTCGGTGCTATGATGTGCCGGAGCCTC-GGACACTGTCGGCAACCTAGGCCCTTGGTCATGCG
248 ACCTAGGTGCT-TGATGTGCGGGAGCCTCAAG-CACCATCGGTAA-CTAGGCCCTTGGTCGTGCG
* ** * *
63834404 GGAGCCTCAAGCACCATCGACACCTT
310 AGAGCCTCGGGCACCATCGGCACCTA
* * *
63834430 TGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
* * ** * ** *
63834495 TCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGCCTCGACCACCATTGGCAACCTAAG
65 TCGGGCACCATCGGCACCTAGGCGCT-TGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG
* *
63834560 -CC-----C-T--AGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCACAG
129 CCCTTGGTCGTGCGGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCAG
* * ** *
63834616 ACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGGGTGCTATCGGCACCTAGGTGCT
194 ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* * * *
63834681 TCGATGTACGGGAGCCTCAAGCACCATCGGTAACGTAGGCCCTTAGTCGTGCTAGAGCCTGGGGC
259 T-GATGTGCGGGAGCCTCAAGCACCATCGGTAAC-TAGGCCCTTGGTCGTGCGAGAGCCTCGGGC
63834746 ACCATCGGCACCTA
322 ACCATCGGCACCTA
* * * * *
63834760 GGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCCTGCGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
** * * * ** *
63834825 TCGGGCACCATTTGCTATCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGC-ACAT-G
65 TCGGGCACCATCGGC-ACCTAGGCGCTTGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
* * * * * * **
63834888 TGCGCTCAGAT-GTCCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGG-TCGTGAC-GGA
128 -GCCCT-TGGTCGTGC-GGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTG-CGGGA
* * * ** * * ** * *
63834950 GCCTC-GAGCACCATCGACAACCTTGGCCCTCAGTCGTACGAGAGCCTTAGGCACCATCGACAAA
187 GCCTCAGA-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AC
* ** * * ** * * *
63835014 CTAAGCCCTTGGTCGAGCGGGAGCCTCGTGCACCATCGGCAAAATAGGCCCTTGGTCGTACGAGA
250 CTAGGTGCTTGAT-GTGCGGGAGCCTCAAGCACCATCGG-TAACTAGGCCCTTGGTCGTGCGAGA
* *
63835079 GCCTCGGCCACCATCAGCACCTA
313 GCCTCGGGCACCATCGGCACCTA
*
63835102 GGGGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCG-ACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
* * * ** *
63835167 TCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGG
65 TCGGGCACCATCGGCACCTAGGCGCTT-GATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG
* * *
63835232 CCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCGGGAGCCTC-
129 CCCTTGGTCGTGCG-GAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCA
* * * * *
63835296 GAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGG
193 G-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTG
* *
63835361 CTTGGATGTGCGGGAGCCTCGAA-CACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCG
257 CTT-GATGTGCGGGAGCCTC-AAGCACCATCGG-TAACTAGGCCCTTGGTCGTGCGAGAGCCTCG
* *
63835425 GCCACCATCAGCACCTA
319 GGCACCATCGGCACCTA
*
63835442 GGGGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCG-ACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
* * * *
63835507 TCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGG
65 TCGGGCACCATCGGCACCTAGGCGCTT-GATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG
* *
63835572 CCCTTGGTCGTGCGAGAGCCTCGACCACCATCGGCACCTAAGTGCTTGGATGTGCGGGA-CCGTT
129 CCCTTGGTCGTGCG-GAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCC--T
* * * *** * * *
63835636 CA-ACACCATCGGTAACCTTGGCCCTTGGTCGTGCGGGAGCCTCAAACCCCATTGGCAACCTTGG
191 CAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
** * * ** * * * * *
63835700 CCCTTGGTCGTGCGAGAGCCTCGGGCTCCATCGGAAAAATAGACCCTTGGTCGTGAGAGAGCCTC
255 TGCTTGAT-GTGCGGGAGCCTCAAGCACCATCGG-TAACTAGGCCCTTGGTCGTGCGAGAGCCTC
*
63835765 GGCCACCATCGGCACCTA
318 GGGCACCATCGGCACCTA
* * * *
63835783 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCCTGCAAGTGCC
1 GGTGCTTGGATGTGCGGGAGCCTCG-ACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
* * *
63835848 TCGGGCACCATCGGCACCTCGGTGCTTTGATGTGCGGGAGCCTCGGGCACCATTGGCAAAATAGG
65 TCGGGCACCATCGGCACCTAGGCGC-TTGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG
* * * * *
63835913 CCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGGAGCTTGGATGTACGGGAGACTCA
129 CCCTTGGTCGTGC-GGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCA
* * ** * * * * * *
63835978 GAAACCATCGGCAAACTAGGCCCGTGGTATTGCAGGAGCGTCAGGCACCATCGGTACAT-GTGCG
193 GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAG-GTG
* * * * * *
63836042 CTCGGATGTGTGGGAGCCTGAGGCACCATCGGCACCTCAGTG---TTGTGAT-GTGCG-GCAGCC
257 CT-TGATGTGCGGGAGCCTCAAGCACCATCGGTAACT-AG-GCCCTTG-G-TCGTGCGAG-AGCC
* ** * *
63836102 TCGGACACTGTCGACAACCTT
316 TCGGGCACCATCGGC-ACCTA
* * * *
63836123 CGTGCTTGGATGTGCAGGAACCTCGGACACCATCGG-AAACCTAGGCCCTTGGTCGTGCGAGAGC
1 GGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGCAAA-CTAGGCCCTTGGTCGTACGAGAGC
* * * * * * *
63836187 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGTGGGAGCCTTGGGCACCATCGGCAAAATT
64 CTCGGGCACCATCGGC-ACCTAGGCGCTTGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAATA
* * * * * *
63836252 GGCCCTTGTTCGTGCTAGAGCCTCGACCACCATCGGCACCGAGGTGCTTGGATGTGCGCGAGCCA
127 GGCCCTTGGTCGTGC-GGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCT
* * * * * * ** * *
63836317 CGGACACTATCGGTAACCTAGGCCTTTGGTCATGCTAGAGCCTGGGGCACCATCGGCACCTAGCT
191 CAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGT
* * * * *
63836382 GCTTGGATGTACGGGAGACTC-AGACACCATCGGTAAACTAGGCCTTTGGTCTTGCGGGAGCCTC
256 GCTT-GATGTGCGGGAGCCTCAAG-CACCATCGGT-AACTAGGCCCTTGGTCGTGCGAGAGCCTC
** * *
63836446 AAGCACCATCGACACCTT
318 GGGCACCATCGGCACCTA
* * *
63836464 TGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
* * * * * *
63836529 TCGGACACCATCGGCAAACTAAGC-CATTGGTCGTGCGGGAGCCTCGTGCACCATCGGCAAAATT
65 TCGGGCACCATCGGC-ACCTAGGCGC-TTGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAATA
* * *
63836593 GGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGTGCTTGGATGTGCGAGAGCCA
127 GGCCCTTGGTCGTGCG-GAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCT
* * *
63836658 CAGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCGCTATCGGCACCTAGGT
191 CAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGT
* * * *
63836723 GCTTCGATGTGTGGGAGCCTCAAGCACCATCGGTAACGTAGGCCCTTAGTCGTGCTAGAGCCTGG
256 GCTT-GATGTGCGGGAGCCTCAAGCACCATCGGTAAC-TAGGCCCTTGGTCGTGCGAGAGCCTCG
63836788 GGCACCATCGGCACCTA
319 GGCACCATCGGCACCTA
* * * * *
63836805 GGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCCTGCGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
* * * * * * **
63836870 TCGGGCACCATCGGCACAT-GTGCGCTCAGATGTCCGGGAGCCTCAGACACTATCGGCAACCTAG
65 TCGGGCACCATCGGCACCTAG-GCGCT-TGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
* * * * ** ** * *
63836934 GCCATTGGTCGTGACGGAGCATCGAG-CACCATCGACAACCTTGGCCCTCAG-TCGTACGAGAGC
128 GCCCTTGGTCGTG-CGGAGCCTCG-GCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGC
* * * * * **
63836997 CTTAGGCACCATCGGCAAACTAAGCCCTTGGTCGAGCGGGAGCCTCGTGCACCATCGGCAAAATA
189 CTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTA
** * * * * * * * ** *
63837062 GGCCCTTGGTCGTACGAGAGCCTC-GGCCACCATCAGCACCTAGGTGCTTGGAT-GTGCGGGAGC
253 GGTGCTTGAT-GTGCGGGAGCCTCAAG-CACCATCGGTAACTAGGCCCTTGG-TCGTGCGAGAGC
* * * *
63837125 CTCAGACACCATCGACAAACTA
315 CTCGGGCACCATCGGC-ACCTA
* * * * * * ** * * *
63837147 GG-GCCTCGG-TCTTACGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 GGTG-CTTGGAT-GTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTT-GGTCGTACGAGA
* * * *
63837208 GCCTCGGGCACCATCGGCACCTAGGTGCTTTGATGTGTGGGAGCCTCGGACACCATCGGCAAATT
62 GCCTCGGGCACCATCGGCACCTAGGCGC-TTGATGTGCGGGAGCCTCGGGCACCATCGGCAAAAT
* * * * ** * **
63837273 AGGCCTTTGGTCTTGCGAGAGCCTCGGGCACTATCGGCTACCTAGGCCCTTGG-TCGTGTGAAAG
126 AGGCCCTTGGTCGTGCG-GAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAG
* * * * * **** ** * * * **
63837337 CCTCGGGCACCATTGGTACA-T-GGCTAGCGGAGGTTCGAGAGCCCCGGG-ATTTATCGGCACCT
188 CCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCACCT
* * * * *
63837399 CGGTGCTATAATGTGCGGGAGCCTC-GGACACTATCGGCAACCTAGGCCCTTGGTCGTGCCG-GA
252 AGGTGCT-TGATGTGCGGGAGCCTCAAG-CACCATCGGTAA-CTAGGCCCTTGGTCGTG-CGAGA
** * * *
63837462 GCCTCAAGCACCATTGACAACCTT
313 GCCTCGGGCACCATCGGC-ACCTA
** * * * * * * *
63837486 GGCCCTTTG-TCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCTTTGGTCGTGCGGGAGC
1 GGTGCTTGGAT-GTGCGGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGC
63837550 CTCGGGCACCATCGG
64 CTCGGGCACCATCGG
63837565 TAAAATAGGC
Statistics
Matches: 4569, Mismatches: 1049, Indels: 481
0.75 0.17 0.08
Matches are distributed among these distances:
326 2 0.00
327 2 0.00
328 1 0.00
329 33 0.01
330 185 0.04
331 32 0.01
337 1 0.00
338 43 0.01
339 407 0.09
340 1468 0.32
341 1731 0.38
342 623 0.14
343 37 0.01
344 4 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (335 bp):
GGTGCTTGGATGTGCGGGAGCCTCGACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCT
CGGGCACCATCGGCACCTAGGCGCTTGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCC
CTTGGTCGTGCGGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCAGAC
ACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTG
ATGTGCGGGAGCCTCAAGCACCATCGGTAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
TCGGCACCTA
Found at i:63837057 original size:426 final size:420
Alignment explanation
Indices: 63831491--63837315 Score: 3290
Period size: 426 Copynumber: 13.7 Consensus size: 420
63831481 TGTCGAGAAC
* * * * * * * * *
63831491 CTAGGCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGAGAA
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGCGCTTGGATGTGCGGGAG
* * * * * * *
63831556 CCACAGACACCAACGACAACCTAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGTACCTA
66 CCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTA
* * * * * *
63831621 GGCGCTCGGATGTGCGGGAGCC-CCAGACACCATCGGCAAACTAAGTCCTTGGTCATGCGAGAGC
130 GGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG-AAACTAGGCCCTTGGTCGTGCGAGAGC
* * * * ** * *
63831685 CTCGGGCGCTATCGGCACCTCA-GTGCTTCGATGTGCGGGAGCCTTGGGCACCATCGGCAACCTA
193 CTCGGGCACCATCGGCACCT-AGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTA
* * * * * * * *
63831749 GGCTCTTGGTCGTGCGTGAGCCTCGGGCACCATCGGTAGCTGGGTGCTCGGATGTGCAGAAGACT
257 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGTGCTTGGATGTGCGGGAGCCT
* * * * * * * *
63831814 CAGACACCATCGGCAAACAAGGCCCTTGGTCTTGCGGGAGACTCGGGCATCATCGGCTACCTAGG
321 CAGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTC-GGCACCATCGACAACCTTGG
* * * *
63831879 CCCTTGGTCGTGCAAAAGCCTCGAGCACCACCGGC-AC
384 CCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAAA
*** ** * *
63831916 CT-GTGTGTTTGGAT-GCACG-GAGCCTCGGACACCATCGGCAAACTAGGC-CTTCGG-TCTTGC
1 CTAG-GCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGGC-AACTAGGCGCTT-GGAT-GTGC
* * * * ** * * * * *
63831976 GGGAGCCTCGGGCACCATCGG-TACCTCGGTGCTTCGACGTGGGGGAGCCTCGGGCACCATCGGC
61 GGGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC
** ** * ** * * * * ** *
63832040 AAAATAGGCCCTTGG-TCGTACTAGAGCCTCGGGCACCATCAGCACCTAGGTACTTCGAT-GTGC
125 -ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGAAACTAGGCCCTT-GGTCGTGC
* * * * ** * * * ** * *
63832103 GGGAGCCTCGGACACCATCAGCAAACTAGGCCCGTGG-TCTTGCGGGAGCCTTGGGCACCATAGG
187 GAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCAGACACCATCGG
* * * * ** * **
63832167 CAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGTAAAATAAGCCCTTGG-TCGTG
250 CAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCT-GGTGCTTGGAT-GTG
* * ** * *
63832231 CGAGAGCCTCAGCCACCATCGGC--CTCTAGGTGCTTGGAT-GTGCGGGAGCCTTGGACACCATT
312 CGGGAGCCTCAGACACCATCGGCAAC-CTAGGCCCTTGG-TCGTGC-GGAGCCTCGG-CACCATC
* * * * *
63832293 GGCAGA-CTAGGCCCTTGGTCCTGCTG-GAGCCTTGGGCACCATCAGCAAA
373 GACA-ACCTTGGCCCTTGGTCGTGC-GAGAGCC-TCGGCACCATCGGCAAA
* ** * * * * * *
63832342 ATAGGCCCTTGGTTTTGCTAGAGCCTCGGGCACCATCGACACCTAGGAGCTTGGATGTACGGGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGCGCTTGGATGTGCGGGAG
* * * * * **
63832407 CCTCAGACACCAGCGGCAAACTAGGCCCGTGGTCTTGTGGGAGCCTCAGG-CACCATCGGCAAAA
66 CCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCCACCATCGGC-ACC
** * ** * * ** * *
63832471 TAGGCCCTTGG-TCGTACTAGAGCCTCG-GACACCATCGGCACCTAGGTGCTTCGAT-GTGCGGG
128 TAGGTGCTTGGAT-GTGCGGGAGCCTCGAG-CACCATCGGAAACTAGGCCCTT-GGTCGTGCGAG
* * ** * * * * * * *
63832533 AGCCTCGGACACCATCAGCAACCTAGGCCCGTGG-TCTTGCGGGAGCCTCGGGCACCATTGGTAA
190 AGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGCAA
* * * * *
63832597 AATAAGCCCTTGGTCGTGCGAGAGCCTCAGCCACCATCGGCCCCTAGGTGCTTGGATGTGCGGGA
253 ACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGTGCTTGGATGTGCGGGA
* * * * * *
63832662 GCCCCGGACACCATTGGCAAACTAGGCCCTTGGTCCTGCGGGAGCCTCGGGCACCATC-AGCAAA
317 GCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTC-GGCACCATCGA-CAAC
* * * * * *
63832726 ATGGGCCCTTGGTTGTGCTAGAGCCTCAGGCACCATCGG-TAC
379 CTTGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAAA
** * * * * * * *
63832768 CTAGGAGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGC-AC-ATGTGTGCTCGGATGTGCCG
1 CTAGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGGCAACTA-G-GCGCTTGGATGTGCGG
** * * * ** * * * **
63832830 GAGCCTCAGGGATCATCGGC-ACCTTGGTGCTATGAT-GTGTCG-GAGCCTCAGACACTGTCGGC
63 GAGCCTC-GACACCATCGGCAAACTAGGCCCT-TGGTCGTG-CGAGAGCCTCGGCCACCATCGGC
** * * * * * ** **
63832892 AACCTAGGCCCTTGG-TCATACGGGAGCCTCGTGCACCA-CCGACACCTTCGTGCTTGGAT-GTG
125 -ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGA-AACTAGGCCCTTGG-TCGTG
* * * * ** * * * *
63832954 CGGGAACCTCGGACACCATCAGCAACCTAGGCCCTTGGACGTACGAGAGCCTCAGGCACCATCGA
186 CGAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGG
* * * * ** **
63833019 CAAACTAAGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGTAAAATTGGCCCTTGG-TCGTG
250 CAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG--CACCTGGTGCTTGGAT-GTG
* ** *
63833083 CGAGAGCCTC-GACCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCAGGAGCCACGGACACCATC
312 CGGGAGCCTCAGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGG-CACCATC
* * * * * * *
63833145 GGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGCAAC
373 GACAACCTTGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAAA
* * * * * * *
63833194 CTAGACCCTTGGTCGTGCTAGAGCCTCGGGCACTATCGGCACCAAGGTGCTTGGATGTGCGGGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGCGCTTGGATGTGCGGGAG
* * * * * *
63833259 CCTCGGACACCATCGACAAACTAGGGCTTTGGTCTTGCG-GAGCCTCGGGCACTATCGGCTACCT
66 CCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-ACCT
** * ** * * * * * * *
63833323 AGGCCCTAGG-TCGTGCGAAAGCCTTGGGCACCATCGG-TAC-ATGTGCGCTCGGAT-GTCCGGG
129 AGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGAAACTA-G-GCCCTTGG-TCGTGCGAG
* * ** * * * ** * *
63833384 AGCCTCAGGCACCATCGACAAAATAGG-CCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-A
190 AGCCTCGGGCACCATCGGC-ACCTAGGTGC-TTGGATGTACGGGAGCCTCAGACACCATCGGCAA
* * * * * * * * ** * *
63833447 CCTAGGAGCTTTGATGCGTG-G-GAGCCTCAGACACCATCGACAAACTAGGCACGTGG-TCTTGC
253 ACTAGG-CCCTTGGT-CGTGCGAGAGCCTCGGGCACCATCGGC-ACCT-GGTGCTTGGAT-GTGC
* * * ** *
63833509 GGGAGTCTCGGGCACCATCGGCAGA--T-GTGTGCTCGGAT-GTGCGGGAGCCTCAGGCACCATC
313 GGGAGCCTCAGACACCATCGGCA-ACCTAG-GCCCTTGG-TCGTGC-GGAGCCTC-GGCACCATC
* ** * * ** *
63833570 GGC-ACCTTGGTGCTATGAT-GTGCCG-GAGCCTCAGACACTGTCGGCAAC
373 GACAACCTTGGCCCT-TGGTCGTG-CGAGAGCCTC-GGCACCATCGGCAAA
* * * * ** * *
63833618 CTAGGCCCTTGGTCATGCGGGAGCCTCGTG-CACCATCGACACCTTCGTGCTTGGATGTGCGGAA
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCCACCATCGGCAACTAGGCGCTTGGATGTGCGGGA
* * * ** * *
63833682 ACCTCGGACACCATCGGCAACCTAGGCCCTTTGTCGTATGAGAGCCTCGGGCACCATCGGCAAAC
65 GCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-ACC
* * * * * * * *
63833747 TAAGG-CCTTGG-TCATGCGGAAGCCTCGGGCACCATCAGTAAAAATTGGCCCTTGGTCGTGTGA
128 T-AGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATC-G-GAAACTAGGCCCTTGGTCGTGCGA
* * * * * *
63833810 GAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCAGGAGCCACGGACACCATCGACAAA
189 GAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAA
* * * * * *
63833875 CCAGGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATCGGCATCAC-GGTGCTTGGATATACGGGA
254 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA-C-CTGGTGCTTGGATGTGCGGGA
* * * * ** ***
63833939 GCCTC-GAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCATTATCGGTTAC
317 GCCTCAG-ACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTC-GGCACCATCGACAAC
* * * * * *
63834003 CTAGGCCCTAGGTCGTGCGAAAGCCTTGGGCACCATCGGTACA
379 CTTGGCCCTTGGTCGTGCGAGAGCC-TCGGCACCATCGGCAAA
* * * * * * * * *
63834046 -T-GTGCGCTCGGAT-GTCCGGGAGCCTCGGGCACCATCGGTACCTCA-GTGCTAT-GATGTCCG
1 CTAG-GCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGGCAACT-AGGCGCT-TGGATGTGCG
* ** * ** * * *
63834106 GGAGCCTCGGACACTATCACCAACCTAGGCAATTGGTCGTGCCAAAGCCTCGGGCACCATCGGCA
62 GGAGCCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-
** * * ** * *** ** *
63834171 AAATAGG-CCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCGCCTAGGAGCTTGGAT-GCGCG
125 ACCTAGGTGC-TTGGATGTGCGGGAGCCTCGAGCACCATCGGAAACTAGGCCCTTGG-TCGTGCG
* * * * * * * * * * *
63834234 GGAGCATCAGACACCATCGACAAACTAGGCCTGTCCT--CT-TGCGGGAGCCTCGGGCACCATCG
188 AGAGCCTCGGGCACCATCGGC-ACCTAGG--TG-CTTGGATGTACGGGAGCCTCAGACACCATCG
* ** * * *
63834296 GCACA-T-GTGTGCTCGGAT-GTGCGGGAGCCTCAGGCACCATCGGCACCTCGGTGCTAT-GATG
249 GCAAACTAG-GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGTGCT-TGGATG
* * ** * *
63834357 TGCCGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCAAGCACCATC
310 TGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTC-GGCACCATC
* ** * * *
63834422 GAC-ACCTTTGTGCTTGGAT-GTGCGGGAACCTCGGACACCATCGGCAAC
373 GACAACCTTGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGGCAAA
* * * * *
63834470 CTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGCGCTTGGATGTGCGGGAG
* * *
63834535 CCTCGACCACCATTGGCAACCTAAG-CC-----C-T---AGAGCCTCGGCCACCATCGGCACCTA
66 CCTCGA-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTA
* * * *
63834590 GGTGCTTGGATGTGCGGGAGCCAC-AGACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGC
130 GGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG-AAACTAGGCCCTTGGTCGTGCGAGAGC
** * * *
63834654 CTCGGGTGCTATCGGCACCTAGGTGCTTCGATGTACGGGAGCCTCA-AGCACCATCGG-TAACGT
193 CTCGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAGA-CACCATCGGCAAAC-T
* * * *
63834717 AGGCCCTTAGTCGTGCTAGAGCCTGGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCC
256 AGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGTGCTTGGATGTGCGGGAGCC
* * * * * * *
63834782 TCAGACACCATCGGCAAACTAGGCCTTTGGTCCTGCGGGAGCCTCGGGCACCATTTG-CTATCTA
320 TCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTC-GGCACCA-TCGACAACCTT
* *
63834846 GGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGCACA
382 GGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAAA
* * * * * * * *
63834886 -T-GTGCGCTCAGAT-GTCCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGG-TCGTGAC
1 CTAG-GCCCT-TGGTCGTGCGAGAGCCTCGGCCACCATCGGCAA-CTAGGCGCTTGGAT-GTG-C
* * * ** * * *
63834947 -GGAGCCTCGAGCACCATCGACAACCTTGGCCCTCAGTCGTACGAGAGCCTTAGG-CACCATCGA
61 GGGAGCCTCGA-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCC-TCGGCCACCATCGG
* * ** * * * *
63835010 CAAACTAAGCCCTTGG-TCGAGCGGGAGCCTCGTGCACCATCGGCAAAATAGGCCCTTGGTCGTA
124 C-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG-AAACTAGGCCCTTGGTCGTG
* * * *
63835074 CGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCGGGAGCCTC-GAACACCATCGG
186 CGAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAG-ACACCATCGG
* * * *
63835138 CAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCG
250 CAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGTGCTTGGATGTGCG
* *
63835203 GGAGCCTC-GAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATC-AG
314 GGAGCCTCAG-ACACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGG-CACCATCGA-
* ** * *
63835266 C-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAA
375 CAACCTTGGCCCTTGG-TCGTGCGAGAGCCTCG-GCACCATCGGCAAA
* * * *
63835312 CTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCGGGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGCGCTTGGATGTGCGGGAG
* *
63835377 CCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCCTCGGCCACCATCAGCACCTA
66 CCTCG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTA
* * *
63835442 GGGGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTACGAGAGCC
130 GGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG-AAACTAGGCCCTTGGTCGTGCGAGAGCC
* * * * * * * *
63835507 TCGGCCACCATCAGCACCTAGGGGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGG
194 TCGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGG
** *
63835572 CCCTTGGTCGTGCGAGAGCCTCGACCACCATCGGCACCTAAGTGCTTGGATGTGCGGGA-CCGTT
259 CCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCT-GGTGCTTGGATGTGCGGGAGCC--T
* * ** * * *
63835636 CA-ACACCATCGGTAACCTTGGCCCTTGGTCGTGCGGGAGCCTCAAACCCCATTGGCAACCTTGG
321 CAGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTC-GGCACCATCGACAACCTTGG
* *
63835700 CCCTTGGTCGTGCGAGAGCCTCGGGCTCCATCGGAAAA
384 CCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAAA
* * * * *
63835738 ATAGACCCTTGGTCGTGAGAGAGCCTCGGCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGCGCTTGGATGTGCGGGAG
* * * * *
63835803 CCTCGAACACCATCGGCAAACTAGGCCCTTGGTCCTGCAAGTGCCTCGGGCACCATCGGCACCTC
66 CCTCG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTA
* * * * *
63835868 GGTGCTTTGATGTGCGGGAGCCTCGGGCACCATTGGCAAAATAGGCCCTTGGTCGTGCAAGAGCC
130 GGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG-AAACTAGGCCCTTGGTCGTGCGAGAGCC
* * *
63835933 TCGGGCACCATCGGCACCTAGGAGCTTGGATGTACGGGAGACTCAGAAACCATCGGCAAACTAGG
194 TCGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGG
* ** * * * * * * * *
63835998 CCCGTGGTATTGC-AGGAGCGTCAGGCACCATCGGTACATGTGCGCTCGGATGTGTGGGAGCCTG
259 CCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGCACCTG-GTGCTTGGATGTGCGGGAGCCTC
* **
63836062 AGGCACCATCGGC-ACCTCAGTG---TTGTGAT-GTGCGGCAGCCTCGGACACTGTCGACAACCT
322 AGACACCATCGGCAACCT-AG-GCCCTTG-G-TCGTGCGG-AGCCTCGG-CACCATCGACAACCT
* ** *
63836122 TCGTGCTTGGAT-GTGC-AGGAACCTCGGACACCATCGG-AAA
381 TGGCCCTTGG-TCGTGCGA-GAGCCTCGG-CACCATCGGCAAA
* * * *
63836162 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGTGG
1 -CTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-AACTAGGCGCTTGGAT-GTGCGG
* * * * * * *
63836226 GAGCCTTGGGCACCATCGGCAAAATTGGCCCTTGTTCGTGCTAGAGCCTCGACCACCATCGGCAC
63 GAGCC-TCGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAC
* * * * * * * *
63836291 CGAGGTGCTTGGATGTGCGCGAGCCACG-GACACTATCGGTAACCTAGGCCTTTGGTCATGCTAG
127 CTAGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG-AAACTAGGCCCTTGGTCGTGCGAG
* * * *
63836355 AGCCTGGGGCACCATCGGCACCTAGCTGCTTGGATGTACGGGAGACTCAGACACCATCGGTAAAC
190 AGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAAC
* * * ** * * *
63836420 TAGGCCTTTGGTCTTGCGGGAGCCTCAAGCACCATCGACACCTTTGTGCTTGGATGTGCGGGAAC
255 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC-TGGTGCTTGGATGTGCGGGAGC
* * * * *
63836485 CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGACACCATCGGCAAACTA
319 CTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGG-CACCATCGACAACCTT
* * *
63836550 AGCCATTGGTCGTGCGGGAGCCTCGTGCACCATCGGCAAA
382 GGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAAA
* * * *
63836590 ATTGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGTGCTTGGATGTGCGAGAG
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGCGCTTGGATGTGCGGGAG
* * * * * *
63836655 CCACAGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCGCTATCGGCACCTA
66 CCTC-GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTA
* * * * * *
63836720 GGTGCTTCGATGTGTGGGAGCCTCAAGCACCATCGGTAACGTAGGCCCTTAGTCGTGCTAGAGCC
130 GGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGAAAC-TAGGCCCTTGGTCGTGCGAGAGCC
*
63836785 TGGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGG
194 TCGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGG
* * * * * ** *
63836850 CCTTTGGTCCTGCGGGAGCCTCGGGCACCATCGGCACATGTGCGCTCAGATGTCCGGGAGCCTCA
259 CCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTG-GTGCTTGGATGTGCGGGAGCCTCA
* * *
63836915 GACACTATCGGCAACCTAGGCCATTGGTCGTGACGGAGCATCGAGCACCATCGACAACCTTGGCC
323 GACACCATCGGCAACCTAGGCCCTTGGTCGTG-CGGAGCCTCG-GCACCATCGACAACCTTGGCC
** * *
63836980 CTCAGTCGTACGAGAGCCTTAGGCACCATCGGCAAA
386 CTTGGTCGTGCGAGAGCC-TCGGCACCATCGGCAAA
* * * * * * *
63837016 CTAAGCCCTTGGTCGAGCGGGAGCCTCGTG-CACCATCGGCAAAATAGGCCCTTGG-TCGTACGA
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCCACCATCGGC-AACTAGGCGCTTGGAT-GTGCGG
* * * ** * * * *
63837079 GAGCCTCGGCCACCATCAGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGACA
63 GAGCCTC-GACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGGC-
* * * * * * * * ** *
63837142 AACTAGG-GCCTCGG-TCTTACGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTCGAT-GTGC
125 ACCTAGGTG-CTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGAAACTAGGCCCTT-GGTCGTGC
* * ** *
63837204 GGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTTGATGTGTGGGAGCCTCGGACACCATCGGCA
187 GAGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCA
* * * *
63837269 AATTAGGCCTTTGGTCTTGCGAGAGCCTCGGGCACTATCGGCTACCT
252 AACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCT
63837316 AGGCCCTTGG
Statistics
Matches: 4244, Mismatches: 919, Indels: 472
0.75 0.16 0.08
Matches are distributed among these distances:
411 2 0.00
412 2 0.00
413 3 0.00
414 59 0.01
415 171 0.04
416 71 0.02
417 5 0.00
418 1 0.00
419 1 0.00
422 1 0.00
423 5 0.00
424 257 0.06
425 1060 0.25
426 1652 0.39
427 899 0.21
428 52 0.01
429 3 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (420 bp):
CTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCAACTAGGCGCTTGGATGTGCGGGAG
CCTCGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTAG
GTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGAAACTAGGCCCTTGGTCGTGCGAGAGCCTC
GGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGGCC
CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGTGCTTGGATGTGCGGGAGCCTCAGAC
ACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGCACCATCGACAACCTTGGCCCTTGG
TCGTGCGAGAGCCTCGGCACCATCGGCAAA
Found at i:63837444 original size:212 final size:211
Alignment explanation
Indices: 63837178--63837781 Score: 499
Period size: 214 Copynumber: 2.8 Consensus size: 211
63837168 CTCGGGCACC
* * * *
63837178 ATCGGCACCTCGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTTGAT-
1 ATCGGCACCTCGGTGCTTCAATGTGCGGGAGCCTCGGACACCATCGGCACCTAGG-CCCTTGATC
** * * *
63837242 GTGTGGGAGCCTC-GGACACCATCGGCAA-ATTAGG-CCTTTGGTCTTGCGAGAGCCTCGGGCAC
65 GTGCCGGAGCCTCAAG-CACCATCGACAACATT-GGCCCTTT-GTCGTGCGAGAGCCTCGGGCAC
* * * * * *
63837304 TATCGGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATTGGTACATGGCTAGCGGAG
127 CATCGGCAAACTAAGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGTACATGGCTAGCGGAG
63837369 GTTCGAGAGCCCCGGGATTT
192 GTTCGAGAGCCCCGGGATTT
* *
63837389 ATCGGCACCTCGGTGCTAT-AATGTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGT
1 ATCGGCACCTCGGTGCT-TCAATGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGAT
* *
63837453 CGTGCCGGAGCCTCAAGCACCATTGACAACCTTGGCCCTTTGTCGTGCGAGAGCCTCGGGCACCA
64 CGTGCCGGAGCCTCAAGCACCATCGACAACATTGGCCCTTTGTCGTGCGAGAGCCTCGGGCACCA
* ** * **** **
63837518 TCGGCAAACTAAGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTC
129 TCGGCAAACTAAGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGT-ACAT-GGCTAGCGGAG
* * ** **
63837583 GTGCGAGAGCCTCGACCA-GC
192 GTTCGAGAGCCCCG-GGATTT
** * ** * * * * *
63837603 ATCGGCACCTAAGTGGTTGGATGTGCGGGA-CCGTTC-AACACCGTCGGCAAACTTGGCCCTTGG
1 ATCGGCACCTCGGTGCTTCAATGTGCGGGAGCC--TCGGACACCATCGGC-ACCTAGGCCCTTGA
* * * * * * *
63837666 TCGTGCGGGAGCCTCAAAC-CCTATTGGCAACCTTGGCCCTTAGTCGTGCGAGAGCCTCGGGCTC
63 TCGTGCCGGAGCCTCAAGCACC-ATCGACAACATTGGCCCTTTGTCGTGCGAGAGCCTCGGGCAC
* * * * *
63837730 CATCGGAAAAAT-AGACCCTTGGTCGTGAGAGAGCCTCGGCCACCATCGGTAC
127 CATCGGCAAACTAAG-CCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGTAC
63837782 CTAGGTGCTT
Statistics
Matches: 323, Mismatches: 56, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
211 48 0.15
212 93 0.29
213 19 0.06
214 160 0.50
215 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (211 bp):
ATCGGCACCTCGGTGCTTCAATGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGATCG
TGCCGGAGCCTCAAGCACCATCGACAACATTGGCCCTTTGTCGTGCGAGAGCCTCGGGCACCATC
GGCAAACTAAGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGTACATGGCTAGCGGAGGTTC
GAGAGCCCCGGGATTT
Found at i:63838166 original size:43 final size:42
Alignment explanation
Indices: 63838067--63838251 Score: 112
Period size: 43 Copynumber: 4.4 Consensus size: 42
63838057 GAGCCTGAGG
* * *
63838067 CACCATCGG-CACCTCAGTG-TTGTGATGTGCGGCAGCCTCGGA
1 CACCATCGGAAACCTAAGTGCTTG-GATGTGCGG-AACCTCGGA
** **
63838109 CACTGTC-GACAACCTTCGTGCTTGGATGTGCAGGAACCTCGGA
1 CACCATCGGA-AACCTAAGTGCTTGGATGTGC-GGAACCTCGGA
* ** *
63838152 CACCATCGGAAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GA
1 CACCATCGGAAACCTAAGTGCTTGGAT-GTGCG-GAACCTCGGA
* * **
63838194 CCACCATCGG-CACCTAAGTGCTTGGATGTGCGGGACCCTCCAA
1 -CACCATCGGAAACCTAAGTGCTTGGATGTGC-GGAACCTCGGA
*
63838237 CACCATCGGCAACCT
1 CACCATCGGAAACCT
63838252 TGGCCNNNNN
Statistics
Matches: 111, Mismatches: 20, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
41 1 0.01
42 39 0.35
43 64 0.58
44 7 0.06
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.19
Consensus pattern (42 bp):
CACCATCGGAAACCTAAGTGCTTGGATGTGCGGAACCTCGGA
Found at i:63838251 original size:85 final size:85
Alignment explanation
Indices: 63834815--63838248 Score: 797
Period size: 85 Copynumber: 40.3 Consensus size: 85
63834805 CCTTTGGTCC
* ** * * * *
63834815 TGCGGGAGCCTCGGGCACCATTTGCTATCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
* * **
63834880 GGCACAT-GTGCGCTCAGATG
66 GGCACCTAG-GTGCTTGGATG
* * *
63834900 TCCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCGTGACG-GAGCCTCGAGCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTG-CGAGAGCCTCGAGCACCAT
* * ** **
63834964 CGACAACCTTGGCCCTCAG-TCG
65 CGGC-ACCTAGGTGCTTGGAT-G
* * * * * * * *
63834986 TACGAGAGCCTTAGG-CACCATCGACAAACTAAGCCCTTGGTCGAGCGGGAGCCTCGTGCACCAT
1 TGCGGGAGCC-TCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
** **
63835050 CGGCAAAATAGGCCCTTGG-TCG
65 CGGC-ACCTAGGTGCTTGGAT-G
* * * * * ** * *
63835072 TACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCACCAT
* **
63835135 CGGCAAACTAGGCCCTTGG-TCG
65 CGGC-ACCTAGGTGCTTGGAT-G
* * * * * ** * *
63835157 TACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCACCAT
* **
63835220 CGGCAAACTAGGCCCTTGG-TCG
65 CGGC-ACCTAGGTGCTTGGAT-G
* * * * * ** * *
63835242 TACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCACCAT
* **
63835305 CGGCAAACTAGGCCCTTGG-TCG
65 CGGC-ACCTAGGTGCTTGGAT-G
* * * * * ** * *
63835327 TACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCACCAT
* **
63835390 CGGCAAACTAGGCCCTTGG-TCG
65 CGGC-ACCTAGGTGCTTGGAT-G
* * * * * ** * *
63835412 TACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGAACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCACCAT
* **
63835475 CGGCAAACTAGGCCCTTGG-TCG
65 CGGC-ACCTAGGTGCTTGGAT-G
* * * * * ** * *
63835497 TACGAGAGCCTCGGCCACCATCAGC-ACCTAGGGGCTTGGAT-GTGCGGGAGCCTCGGGCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCACCAT
* ** **
63835560 CGGTAAAATAGGCCCTTGG-TCG
65 CGG-CACCTAGGTGCTTGGAT-G
* * * ** * *
63835582 TGCGAGAGCCTC-GACCACCATCGGC-ACCTAAGTGCTTGGAT-GTGCGGGA-CCGTTC-AACAC
1 TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCC--TCGAGCAC
* * **
63835642 CATCGGTAACCTTGGCCCTTGG-TCG
62 CATCGG-CACCTAGGTGCTTGGAT-G
** * * * * * *
63835667 TGCGGGAGCCTCAAACCCCATTGGCAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGGGCTCCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
* ** ***
63835732 GGAAAAATAGACCCTTGG-TCG
66 GG-CACCTAGGTGCTTGGAT-G
* * * * ** * *
63835753 TGAGAGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCACCAT
* ** *
63835816 CGGCAAACTAGGCCCTTGG-TCC
65 CGGC-ACCTAGGTGCTTGGAT-G
** * * * * * * * * *
63835838 TGCAAGTGCCTCGGGCACCATCGGC-ACCTCGGTGCTTTGAT-GTGCGGGAGCCTCGGGCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGG-CCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* ** **
63835901 TGGCAAAATAGGCCCTTGG-TCG
65 CGGC-ACCTAGGTGCTTGGAT-G
** * * ** * * * *
63835923 TGCAAGAGCCTCGGGCACCATCGGC-ACCTAGGAGCTTGGAT-GTACGGGAGACTC-AGAAACCA
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAG-CACCA
* ** *
63835985 TCGGCAAACTAGGCCCGTGGTAT-
64 TCGGC-ACCTAGGTGCTTGG-ATG
* * * * * * * *
63836008 TGCAGGAGCGTCAGG-CACCATCGGTACA-T-GTGCGCTCGGAT-GTGTGGGAGCCT-GAGGCAC
1 TGCGGGAGCCTC-GGACACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGAGAGCCTCGA-GCAC
63836068 CATCGGCACCTCA-GTG-TTGTGATG
62 CATCGGCACCT-AGGTGCTTG-GATG
* ** * * ** ** *
63836092 TGCGGCAGCCTCGGACACTGTCGACAACCTTCGTGCTTGGAT-GTGC-AGGAACCTCG-GACACC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGA-GAGCCTCGAG-CACC
* **
63836154 ATCGGAAACCTAGGCCCTTGG-TCG
63 ATCGG-CACCTAGGTGCTTGGAT-G
* * * * * * *
63836178 TGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGTGGGAGCCTTGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
** * ** *
63836243 GGCAAAATTGGCCCTT-GTTCG
66 GGC-ACCTAGGTGCTTGGAT-G
** * * ** * * *
63836264 TGCTAGAGCCTC-GACCACCATCGGC-ACCGAGGTGCTTGGAT-GTGCGCGAGCCACG-GACACT
1 TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAG-CACC
* * *
63836325 ATCGGTAACCTAGG-CCTTTGG-TCA
63 ATCGG-CACCTAGGTGC-TTGGAT-G
** * * * * * * *
63836349 TGCTAGAGCCTGGGGCACCATCGGC-ACCTA-GCTGCTTGGAT-GTACGGGAGACTC-AGACACC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGC-CCTTGG-TCGTGCGAGAGCCTCGAG-CACC
* * * *
63836410 ATCGGTAAACTAGG-CCTTTGG-TCT
63 ATCGG-CACCTAGGTGC-TTGGAT-G
* * * ** ** * *
63836434 TGCGGGAGCCTC-AAGCACCATCGAC-ACCTTTGTGCTTGGAT-GTGCGGGAACCTCG-GACACC
1 TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAG-CACC
**
63836495 ATCGGCAACCTAGGCCCTTGG-TCG
63 ATCGGC-ACCTAGGTGCTTGGAT-G
* * * * * *
63836519 TACGAGAGCCTCGGACACCATCGGCAAACTAAGCCATTGGTCGTGCGGGAGCCTCGTGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
** * **
63836584 GGCAAAATTGGCCCTTGG-TCG
66 GGC-ACCTAGGTGCTTGGAT-G
* * ** *
63836605 TGCGAGAGCCTCGGCCACCATCGGC-AACTAGGTGCTTGGAT-GTGCGAGAGCCAC-AGACACCA
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAG-CACCA
* ** *
63836667 TCGGCAAACTAGGCCCTTGG-TCT
64 TCGGC-ACCTAGGTGCTTGGAT-G
* * * * ** * * * *
63836690 TGCGGGAGCCTCGGGCGCTATCGGC-ACCTAGGTGCTTCGAT-GTGTGGGAGCCTCAAGCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTT-GGTCGTGCGAGAGCCTCGAGCACCAT
* * ** *
63836753 CGGTAACGTAGGCCCTTAG-TCG
65 CGG-CACCTAGGTGCTTGGAT-G
** * * * ** * *
63836775 TGCTAGAGCCTGGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTACGGGAGCCTC-AGACACCA
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGAG-CACCA
* * *
63836837 TCGGCAAACTAGG-CCTTTGG-TCC
64 TCGGC-ACCTAGGTGC-TTGGAT-G
* * * * * * * *
63836860 TGCGGGAGCCTCGGGCACCATCGGCACA-T-GTGCGCTCAGAT-GTCCGGGAGCCTC-AGACACT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAG-GCCCT-TGGTCGTGCGAGAGCCTCGAG-CACC
*
63836921 ATCGGCAACCTAGG-CCATTGG-TCG
63 ATCGGC-ACCTAGGTGC-TTGGAT-G
* * * * ** * *
63836945 TGAC-GGAGCATC-GAGCACCATCGACAACCTTGGCCCTCAGTCGTACGAGAGCCT-TAGGCACC
1 TG-CGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGA-GCACC
* * **
63837007 ATCGGCAAACTAAGCCCTTGG-TCG
63 ATCGGC-ACCTAGGTGCTTGGAT-G
* * *
63837031 AGCGGGAGCCTCGTG-CACCATCGGCAAAATAGGCCCTTGGTCGTACGAGAGCCTCG-GCCACCA
1 TGCGGGAGCCTCG-GACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAG-CACCA
*
63837094 TCAGCACCTAGGTGCTTGGATG
64 TCGGCACCTAGGTGCTTGGATG
* * * * * * * *
63837116 TGCGGGAGCCTCAGACACCATCGACAAACTAGGGCCTCGGTCTTACGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
* *
63837181 GGCACCTCGGTGCTTCGATG
66 GGCACCTAGGTGCTTGGATG
* * * * * * *
63837201 TGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTTGAT-GTGTGGGAGCCTCG-GACACCA
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGG-CCCTTGGTCGTGCGAGAGCCTCGAG-CACCA
** * *
63837263 TCGGCAAATTAGG-CCTTTGG-TCT
64 TCGGC-ACCTAGGTGC-TTGGAT-G
* * * * * * * * *
63837286 TGCGAGAGCCTCGGGCACTATCGGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
* * *
63837351 GGTACAT-GGCTAGC--GGAGG
66 GGCACCTAGG-T-GCTTGGATG
* * * *** * * ** ** * *
63837370 TTCGAGAGCCCCGGGA-TTTATCGGC-ACCTCGGTGCTATAAT-GTGCGGGAGCCTCG-GACACT
1 TGCGGGAGCCTC-GGACACCATCGGCAAACTAGGCCCT-TGGTCGTGCGAGAGCCTCGAG-CACC
**
63837431 ATCGGCAACCTAGGCCCTTGG-TCG
63 ATCGGC-ACCTAGGTGCTTGGAT-G
* * * * * * * *
63837455 TGCCGGAGCCTC-AAGCACCATTGACAACCTTGGCCCTTTGTCGTGCGAGAGCCTCGGGCACCAT
1 TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* * *
63837519 CGGCAAACTAAG-CCTTTGG-TCG
65 CGGC-ACCTAGGTGC-TTGGAT-G
* * * * *
63837541 TGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGAGAGCCTCGACCAGCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
* *
63837606 GGCACCTAAGTGGTTGGATG
66 GGCACCTAGGTGCTTGGATG
* * * * * *
63837626 TGCGGGA-CCGTTC-AACACCGTCGGCAAACTTGGCCCTTGGTCGTGCGGGAGCCTCAAAC-CCT
1 TGCGGGAGCC--TCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACC-
* * ** *
63837688 ATTGGCAACCTTGGCCCTTAG-TCG
63 ATCGGC-ACCTAGGTGCTTGGAT-G
* * * * * * *
63837712 TGCGAGAGCCTCGGGCTCCATCGGAAAAATAGACCCTTGGTCGTGAGAGAGCCTCG-GCCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAG-CACCAT
*
63837776 CGGTACCTAGGTGCTTGGATG
65 CGGCACCTAGGTGCTTGGATG
* * * *
63837797 TGCGGGAGCCTCGGACACCATTGGCAAACTAGGCCCTTGGTCCTGC-ACGTGCCTCGGGCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA-GAGCCTCGAGCACCAT
* *
63837861 CGGCACCTCGGTGCTTTGATG
65 CGGCACCTAGGTGCTTGGATG
* * * * *
63837882 TGCGGGAGCCTCGGGCACCATTGGCAAAATAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
*
63837947 GGCACCTAGGAGCTTGGATG
66 GGCACCTAGGTGCTTGGATG
* * * * * ** *
63837967 TACGGGAGACTCAGAAACCATCGGCAAACTAGGCCCGTGGTATTGC-AGGAGCATC-AGGCACCA
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA-GAGCCTCGA-GCACCA
* * * *
63838030 TCGGTACAT-GTGCGCTCGGATG
64 TCGGCACCTAG-GTGCTTGGATG
* * *
63838052 TGTGGGAGCCT-GAGGCACCATCGGC-ACCTCAGTG---TTGTGAT-GTGCG-GCAGCCTCG-GA
1 TGCGGGAGCCTCG-GACACCATCGGCAAACT-AG-GCCCTTG-G-TCGTGCGAG-AGCCTCGAG-
** * **
63838109 CACTGTCGACAACCTTCGTGCTTGGATG
59 CACCATCGGC-ACCTAGGTGCTTGGATG
* * *
63838137 TGCAGGAACCTCGGACACCATCGG-AAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGACCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAA-CTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
*
63838201 CGGCACCTAAGTGCTTGGATG
65 CGGCACCTAGGTGCTTGGATG
* **
63838222 TGCGGGACCCTCCAACACCATCGGCAA
1 TGCGGGAGCCTCGGACACCATCGGCAA
63838249 CCTTGGCCNN
Statistics
Matches: 2687, Mismatches: 503, Indels: 317
0.77 0.14 0.09
Matches are distributed among these distances:
82 1 0.00
83 39 0.01
84 123 0.05
85 1865 0.69
86 631 0.23
87 27 0.01
88 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (85 bp):
TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
GGCACCTAGGTGCTTGGATG
Found at i:63847651 original size:85 final size:85
Alignment explanation
Indices: 63847505--63850505 Score: 703
Period size: 85 Copynumber: 35.2 Consensus size: 85
63847495 NNNNNNNNGT
* * * * * * *
63847505 GCCTCGGGCACCATCGGCACCTCGGTGCTTTGATGTGCGGGAGCCTCGGGCACCATTGGCAAAAT
1 GCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACT
63847570 AGGCCCTTGGTCGTGCAAGA
66 AGGCCCTTGGTCGTGCAAGA
* * * *
63847590 GCCTCGGGCACCATCGGCACCTAGGAGCTTGGATGTACGGGAGACTCAGAAACCATCGGCAAACT
1 GCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACT
* ** *
63847655 AGGCCCGTGGTATTGCAGGA
66 AGGCCCTTGGTCGTGCAAGA
* * * * * * * *
63847675 GCATCAGGCACCATCGGTACAT-GTGCGCTCGGATGTGTGGGAGCCTCAGGCACCATCGGC-ACC
1 GCCTCGGGCACCATCGGCACCTAG-GCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAAC
*
63847738 TCAGTG---TTGTGAT-GTGC-GGTA
65 T-AG-GCCCTTG-G-TCGTGCAAG-A
* ** * ** * *
63847759 GCCTCGGACACTGTCGACAACCTTCGCGCTTGGATGTACGGGAACCTCAGACACCATCGG-AAAC
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAA-
*
63847823 CTAGGCCCTTGGTCGTGCGAGA
64 CTAGGCCCTTGGTCGTGCAAGA
* * * * ** * *
63847845 GCCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGTGGGAGCCTTGGGCACCATCAGCAAA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* * * *
63847909 ATTGGCCCTTGTTCGTGCTAGA
64 CTAGGCCCTTGGTCGTGCAAGA
** * * * * * * * *
63847931 GCCTCGACCACCATCGGCACCGAGGTGCTTGGATGTGCGCGAGCCACGGACACTATCGGTAACCT
1 GCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACT
* * *
63847996 AGGCCTTTGGTCATGCTAGA
66 AGGCCCTTGGTCGTGCAAGA
* * * * * *
63848016 TCCTGGGGCACCATCGGCACCTA-GCTGCTTGGATGTACGGGAGACTCAAACACCATCGGTAAAC
1 GCCTCGGGCACCATCGGCACCTAGGC-GCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAAC
* * **
63848080 TAGGCCTTTGGTCTTGCGGGA
65 TAGGCCCTTGGTCGTGCAAGA
* * * * ** * * **
63848101 GCCTCGGGCACCATTGGCTACCTAGGCCCTTAG-TCATGCGAAAGCCTCGGGCACCATCGGCTCA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* * * * **
63848165 -T-GTGCGCTCAGAT-GTCCGGGA
64 CTAG-GCCCT-TGGTCGTGCAAGA
* * * * * *
63848186 GCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATATGCGGGAGCCTCAGACACTATTGGCAACC
1 GCCTCGGGCACCATCGGCACCTAGGCGCT-TGGATGTGCGGGAGCCTCAGACACCATCGGCAAAC
* **
63848250 AAGGCCCTTGGTCGTGCCGGA
65 TAGGCCCTTGGTCGTGCAAGA
* * * * * * * * *
63848271 GCCTCGAGCACCATCGACAGCCTTGGCCCTTGG-TCGTGCGAGAACCTCGGGCACCATCGGTAAA
1 GCCTCGGGCACCATCGGCA-CCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* * **
63848335 CTAAGCCCTTGGTTGTGCGGGA
64 CTAGGCCCTTGGTCGTGCAAGA
* * *** ** * * * * * * *
63848357 GCCTCGAGTACCATCCATAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCGTTGGC-AC
1 GCCTCGGGCACCAT-CGGCACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* ** ** *
63848420 CAAGGTGCTTGGAT-GTGCGGGT
64 CTAGGCCCTTGG-TCGTGCAAGA
* ** * * * * *
63848442 CCCTCGAACACCATCAGCAACCTTGGCCCTTGG-TCGTGCGGGAACCTC-GAACACCATCGGTAA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAG-ACACCATCGGCAA
* * * *
63848505 CCGAGGCCCTTGGTCATGCGAGA
63 ACTAGGCCCTTGGTCGTGCAAGA
* * * * * *
63848528 GCCTCGGGCACCATCGGTAAACTAAGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA
1 GCCTCGGGCACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGC-AA
* * * *
63848592 ATTA-GCCCTTCGTCGTACGAGA
63 ACTAGGCCCTTGGTCGTGCAAGA
** * * * ** *
63848614 GCCTCGACCACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCAAAGACAAACT
1 GCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACT
* * **
63848679 AGGCCCTTCGTCTTGCGGGA
66 AGGCCCTTGGTCGTGCAAGA
* * * ** * * * * *
63848699 GCCTCAGGCACTATCGGCACCTTGGTACTTCGATGTGCGGGAGACTCGGGCACCATCGGC-ACCT
1 GCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACT
** **
63848763 AGGTGCTTGGAT-GTGCGGGA
66 AGGCCCTTGG-TCGTGCAAGA
* * * * * * * * * * *
63848783 GCCTCAGACGCCATCGGCAAACTAGGCCCGTAG-TCTTACGGGAGCCTCGGGCACCATCGGCAAA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* * * **
63848847 CTAAGCCATTGGTCATGCGGGA
64 CTAGGCCCTTGGTCGTGCAAGA
* ** * ** * * * *
63848869 GCCTCAGGTTCCATCGGTAAAATAAGCCCATGG-TCGTGCGAGAGCCTC-GACCACCATCGGC-A
1 GCCTCGGGCACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGA-CACCATCGGCAA
* ** **
63848931 CCTAGGTGCTTGGAT-GTGCGGGA
63 ACTAGGCCCTTGG-TCGTGCAAGA
* ** * * * * **
63848954 GCCTCGGACATAATTGGCAAACTAGGCCCTTGG-TCCTGCGGGAGCCTTGGGA-ACCATCGGC--
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCC-TCAGACACCATCGGCAA
* ** * **
63849015 ACGTCGGTGCTTCGAT-GTGCGGGA
63 AC-TAGGCCCTT-GGTCGTGCAAGA
** ** * ** * * *
63849039 GCCTCAAGCACCATCGGCGAAATAGGC-CATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-AC
1 GCCTCGGGCACCATCGGC-ACCTAGGCGC-TTGGATGTGCGGGAGCCTCAGACACCATCGGCAAA
* ** **
63849102 CTAAGAGCTTGGAT-GTGCGCGA
64 CTAGGCCCTTGG-TCGTGCAAGA
* * * * * * ** * *
63849124 GCCTCAGACACCATCGGCAAACTAGGCCCGTGG-TCTTGCGGGAGCCTTGGGCACCATC-G-ATA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
** * **
63849186 C-ATGTGTGCTCGGAT-GTGCGGGA
64 CTA-G-GCCCTTGG-TCGTGCAAGA
* * * * * * ** *
63849209 ACCTCAGGCACCATCGGCACCTCGGTGCTAT-GATGTGCCGGAGCCTCGGACACTGTCGGCAACC
1 GCCTCGGGCACCATCGGCACCTAGGCGCT-TGGATGTGCGGGAGCCTCAGACACCATCGGCAAAC
* **
63849273 TAGGCCCTTGGTCATGCGGGA
65 TAGGCCCTTGGTCGTGCAAGA
* * ** * * * * * *
63849294 GCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGAGAACCTCGGACACCATCGGTAACCT
1 GCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACT
*
63849359 AGGCCCTTGGTCGTGCGAGA
66 AGGCCCTTGGTCGTGCAAGA
* * * * * *
63849379 GCCTCGGACACCATCGGCAAACTAAGC-CTT-TAGTCGTGCGGGAGCCTCAGGCACCGTCGGCAA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGA-T-GTGCGGGAGCCTCAGACACCATCGGCAA
* * *
63849442 AATTGGCCCTTGGTCGTGCGAGA
63 ACTAGGCCCTTGGTCGTGCAAGA
* * * ** * * * *
63849465 GCCTCGGGCACCATCGGTAACCTAGACCCTTGG-TCGTGCTAGAGCCTCGGGCACCATGGGC-AC
1 GCCTCGGGCACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* ** **
63849528 CAAGGTGCTTGGAT-GTGCGGGA
64 CTAGGCCCTTGG-TCGTGCAAGA
* * * * * * * *
63849550 GCCTCGGACACCATCGACAAACTAGGC-CTTTGG-TCTTGCGGGAGCCTCGGGCACTATCGGCTA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGC-TTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAA
* * **
63849613 CCTAGGCCCTTGGTCATGCGGGA
63 ACTAGGCCCTTGGTCGTGCAAGA
* * * * ** * * * * *
63849636 CCCTCGAGCACCATCGACTCCTTCGTGCTTGGATGTGCGGGGGGGACCCTC-GGCCCCATCGG-T
1 GCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGC----GGGAGCCTCAGACACCATCGGCA
* ** * **
63849699 ACCTCA-GTACTATGAT-GTGCGGGA
62 AACT-AGGCCCT-TGGTCGTGCAAGA
* ** * * * * * *
63849723 GCCTCGGGCACCATCGGTAAAATTGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGGC-AC
1 GCCTCGGGCACCATCGG-CACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* ** *
63849786 CTAAGTGCTTGGAT-GTGCAGGA
64 CTAGGCCCTTGG-TCGTGCAAGA
* * * * * * * *
63849808 GCCACGGACACCATCGGCACACTAGGCCCTTGG-TCTTGCAGGAGCCTCGGGCACCATCGGC-AT
1 GCCTCGGGCACCATCGGCAC-CTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* ** **
63849871 CAAGGTGCTTGGAT-GTGCGGGA
64 CTAGGCCCTTGG-TCGTGCAAGA
* ** * * * * * * * * *
63849893 GCCTTGAACACCATCGACAAACTAGGC-CTTTGG-TCTTGCGGGAGCCACGGGCACTATTGGCTA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGC-TTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAA
* *
63849956 CCTAGGCCCTAGGTCGTGCGAA-A
63 ACTAGGCCCTTGGTCGTGC-AAGA
* * * * * * * * * * **
63849979 GCCTTGGGCACCATCGGCACAT-GTGCGATCGGATCTCCGGGATCCTCGGGCACCATCGGTACCC
1 GCCTCGGGCACCATCGGCACCTAG-GCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAAC
* * **
63850043 CAGTG--CTATGAT-GTGCGGGA
65 TAG-GCCCT-TGGTCGTGCAAGA
* * * * * ** * *
63850063 GCCTCGGACACTATCAGCAACCTAGGCCCTTGG-TCATGCGAAAGCCTCGGGCACCATCGGCAAA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* * * *
63850127 ATAGGCCATTGGTTGTGCTAGA
64 CTAGGCCCTTGGTCGTGCAAGA
*
63850149 GCCTCGGGCACCATCGGCACCTAGGAC-CTTGGATGCGCGGGAGCCTCAGACACCATCGGCAAAC
1 GCCTCGGGCACCATCGGCACCTAGG-CGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAAC
* ***
63850213 TAGG-CCTGTGGTCTTGTGGGA
65 TAGGCCCT-TGGTCGTGCAAGA
* * ** * * *
63850234 GCCTCGGGCACCATCGGCACAT-GTGTGCTCAGATATGCGGGAGCCTCA-AGCACCATCGAC-AC
1 GCCTCGGGCACCATCGGCACCTAG-GCGCTTGGATGTGCGGGAGCCTCAGA-CACCATCGGCAAA
** **
63850296 CTCAGTG--CTATAAT-GTGCCGGA
64 CT-AG-GCCCT-TGGTCGTGCAAGA
* * * * *
63850318 GCCTCGGACACTATCGGCAACCTAGGCCCTTGG-TCATGCGGGAGCCTC-GAGCACCATCGAC-A
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGA-CACCATCGGCAA
* ** ** * **
63850380 CCTTCGTGCTTAGAT-GTGCGGGA
63 ACTAGGCCCTT-GGTCGTGCAAGA
* * * * * *
63850403 ACCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAAA
1 GCCTCGGGCACCATCGGC-ACCTAGGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAA
* ** **
63850467 CTAAGCCCTTAATCGTGCGGGA
64 CTAGGCCCTTGGTCGTGCAAGA
63850489 GCCTCGGGCACCATCGG
1 GCCTCGGGCACCATCGG
63850506 TAAAATTGGA
Statistics
Matches: 2203, Mismatches: 579, Indels: 267
0.72 0.19 0.09
Matches are distributed among these distances:
83 6 0.00
84 198 0.09
85 1324 0.60
86 591 0.27
87 51 0.02
88 25 0.01
89 8 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (85 bp):
GCCTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACT
AGGCCCTTGGTCGTGCAAGA
Found at i:63847882 original size:43 final size:43
Alignment explanation
Indices: 63847505--63850731 Score: 1571
Period size: 43 Copynumber: 75.7 Consensus size: 43
63847495 NNNNNNNNGT
* * * * *
63847505 GCCTCGGGCACCATCGGC-ACCTCGGTGCTTTGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGG-CCCTTGGTCGTGCGGGA
* * **
63847547 GCCTCGGGCACCATTGGCAAAATAGGCCCTTGGTCGTGCAAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* ** *
63847590 GCCTCGGGCACCATCGGC-ACCTAGGAGCTTGGAT-GTACGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * ** * ** *
63847632 GACTCAGAAACCATCGGCAAACTAGGCCCGTGGTATTGCAGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * * * *
63847675 GCATCAGGCACCATCGGTACA-T-GTGCGCTCGGAT-GTGTGGGA
1 GCCTCGGGCACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGGGA
* * *
63847717 GCCTCAGGCACCATCGGC-ACCTCAGTG---TTGTGAT-GTGCGGTA
1 GCCTCGGGCACCATCGGCAAACT-AG-GCCCTTG-G-TCGTGCGGGA
* ** * * ** * *
63847759 GCCTCGGACACTGTCGACAACCTTCGCGCTTGGAT-GTACGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * *
63847802 ACCTCAGACACCATCGG-AAACCTAGGCCCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAAA-CTAGGCCCTTGGTCGTGCGGGA
* *
63847845 GCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGTGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * * **
63847888 GCCTTGGGCACCATCAGCAAAATTGGCCCTTGTTCGTGCTAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
** * * ** *
63847931 GCCTCGACCACCATCGGC-ACCGAGGTGCTTGGAT-GTGCGCGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * * * * **
63847973 GCCACGGACACTATCGGTAACCTAGGCCTTTGGTCATGCTAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * *
63848016 TCCTGGGGCACCATCGGC-ACCTA-GCTGCTTGGAT-GTACGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGC-CCTTGG-TCGTGCGGGA
* *** * * *
63848058 GACTCAAACACCATCGGTAAACTAGGCCTTTGGTCTTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * * **
63848101 GCCTCGGGCACCATTGGCTACCTAGGCCCTTAGTCATGCGAAA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
** * * * *
63848144 GCCTCGGGCACCATCGGCTCA-T-GTGCGCTCAGAT-GTCCGGGA
1 GCCTCGGGCACCATCGGCAAACTAG-GCCCT-TGGTCGTGCGGGA
* * ** * *
63848186 GCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-ATGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGA
* * * * * * *
63848228 GCCTCAGACACTATTGGCAACCAAGGCCCTTGGTCGTGCCGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * ** * *
63848271 GCCTCGAGCACCATCGACAGCCTTGGCCCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * *
63848314 ACCTCGGGCACCATCGGTAAACTAAGCCCTTGGTTGTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * *** * *
63848357 GCCTCGAGTACCATCCATAAAATAGGCCCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * * ** *
63848400 GCCTCGGCCACCGTTGGC-ACCAAGGTGCTTGGAT-GTGCGGGT
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* ** * * *
63848442 CCCTCGAACACCATCAGCAACCTTGGCCCTTGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* ** * * * * *
63848485 ACCTCGAACACCATCGGTAACCGAGGCCCTTGGTCATGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* *
63848528 GCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * *
63848571 GCCTCGGGCACCATCGGCAAAATTA-GCCCTTCGTCGTACGAGA
1 GCCTCGGGCACCATCGGC-AAACTAGGCCCTTGGTCGTGCGGGA
** * * **
63848614 GCCTCGACCACCATCGGC-ACCAAGGTGCTTGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* ** * * *
63848656 GCCTCGGACACCAAAGACAAACTAGGCCCTTCGTCTTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * ** *
63848699 GCCTCAGGCACTATCGGC-ACCTTGGTACTTCGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTT-GGTCGTGCGGGA
* * **
63848741 GACTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * * * *
63848783 GCCTCAGACGCCATCGGCAAACTAGGCCCGTAGTCTTACGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * *
63848826 GCCTCGGGCACCATCGGCAAACTAAGCCATTGGTCATGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* ** * * * * *
63848869 GCCTCAGGTTCCATCGGTAAAATAAGCCCATGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
** * **
63848912 GCCTCGACCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* ** * *
63848954 GCCTCGGACATAATTGGCAAACTAGGCCCTTGGTCCTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * ** *
63848997 GCCTTGGGAACCATCGGC--ACGTCGGTGCTTCGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAAC-TAGGCCCTT-GGTCGTGCGGGA
** * * **
63849039 GCCTCAAGCACCATCGGCGAAA-TAGGCCATTGGTTGTGCTAGA
1 GCCTCGGGCACCATCGGC-AAACTAGGCCCTTGGTCGTGCGGGA
* * ** *
63849082 GCCTCGGGCACCATCGGC-ACCTAAGAGCTTGGAT-GTGCGCGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * *
63849124 GCCTCAGACACCATCGGCAAACTAGGCCCGTGGTCTTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * ** *
63849167 GCCTTGGGCACCATC-G-ATAC-ATGTGTGCTCGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTA-G-GCCCTTGG-TCGTGCGGGA
* * * * ** * *
63849209 ACCTCAGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCCGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGA
* ** * *
63849251 GCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * ** ** *
63849294 GCCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-GTGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * *
63849336 ACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * *
63849379 GCCTCGGACACCATCGGCAAACTAAGCCTTTAGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * *
63849422 GCCTCAGGCACCGTCGGCAAAATTGGCCCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * **
63849465 GCCTCGGGCACCATCGGTAACCTAGACCCTTGGTCGTGCTAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * **
63849508 GCCTCGGGCACCATGGGC-ACCAAGGTGCTTGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * *
63849550 GCCTCGGACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * *
63849593 GCCTCGGGCACTATCGGCTACCTAGGCCCTTGGTCATGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * ** ** **
63849636 CCCTCGAGCACCATCGAC-TCCTTCGTGCTTGGAT-GTGCGGGGGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC----GGGA
* * * * ** *
63849682 CCCTC-GGCCCCATCGG-TACCTCA-GTACTATGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACT-AGGCCCT-TGGTCGTGCGGGA
* * * *
63849723 GCCTCGGGCACCATCGGTAAAATTGGCCCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * ** *
63849766 GCCTCGGCCACCATCGGC-ACCTAAGTGCTTGGAT-GTGCAGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * *
63849808 GCCACGGACACCATCGGCACACTAGGCCCTTGGTCTTGCAGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * **
63849851 GCCTCGGGCACCATCGGC-ATCAAGGTGCTTGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* ** * * *
63849893 GCCTTGAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * * * **
63849936 GCCACGGGCACTATTGGCTACCTAGGCCCTAGGTCGTGCGAAA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * ** * *
63849979 GCCTTGGGCACCATCGGCACA-T-GTGCGATCGGATC-TCCGGGA
1 GCCTCGGGCACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGGGA
* * ** * *
63850021 TCCTCGGGCACCATCGGTACCCCAGTG--CTATGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAG-GCCCT-TGGTCGTGCGGGA
* * * * * **
63850063 GCCTCGGACACTATCAGCAACCTAGGCCCTTGGTCATGCGAAA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * **
63850106 GCCTCGGGCACCATCGGCAAAATAGGCCATTGGTTGTGCTAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * *
63850149 GCCTCGGGCACCATCGGC-ACCTAGGACCTTGGAT-GCGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * *
63850191 GCCTCAGACACCATCGGCAAACTAGG-CCTGTGGTCTTGTGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGA
* ** * * *
63850234 GCCTCGGGCACCATCGGCACA-T-GTGTGCTCAGAT-ATGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAG-GCCCT-TGGTCGTGCGGGA
** * * ** *
63850276 GCCTCAAGCACCATCGAC-ACCTCAGTG--CTATAAT-GTGCCGGA
1 GCCTCGGGCACCATCGGCAAACT-AG-GCCCT-TGGTCGTGCGGGA
* * * *
63850318 GCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCATGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * ** ** *
63850361 GCCTCGAGCACCATCGAC-ACCTTCGTGCTTAGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTT-GGTCGTGCGGGA
* * * *
63850403 ACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* **
63850446 GCCTCGGGCACCATCGGCAAACTAAGCCCTTAATCGTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * *
63850489 GCCTCGGGCACCATCGGTAAAATTGGACCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * ** * *
63850532 GCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCAGAA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * *
63850574 GCCACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * **
63850617 GCCTCGGGCACTATCGGC-ATCAAGGTGCTTGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
** * * * *
63850659 GCCTCGAACACCATCGACAAACTAGGCCTTTGGTCTTACGGGA
1 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * *
63850702 GCCTCGGGCACTATCGACTACCTAGGCCCT
1 GCCTCGGGCACCATCGGCAAACTAGGCCCT
63850732 ATTGTCACGG
Statistics
Matches: 2347, Mismatches: 717, Indels: 241
0.71 0.22 0.07
Matches are distributed among these distances:
40 1 0.00
41 29 0.01
42 857 0.37
43 1406 0.60
44 22 0.01
45 21 0.01
46 11 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (43 bp):
GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
Found at i:63848227 original size:42 final size:41
Alignment explanation
Indices: 63848094--63848232 Score: 113
Period size: 42 Copynumber: 3.3 Consensus size: 41
63848084 CCTTTGGTCT
* *
63848094 TGCGGGAGCCTCGGGCACCATTGGCTACCTAGGCCCT-T-AGTCA
1 TGCGGGAGCCTCGGGCACCATCGGC-ACCT-GGCGCTATGA-T-A
** * * *
63848137 TGCGAAAGCCTCGGGCACCATCGGCTCATGTGCGCTCA-GATG
1 TGCGGGAGCCTCGGGCACCATCGGCACCTG-GCGCT-ATGATA
* *
63848179 TCCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATA
1 TGCGGGAGCCTCGGGCACCATCGGCACCT-GGCGCTATGATA
63848221 TGCGGGAGCCTC
1 TGCGGGAGCCTC
63848233 AGACACTATT
Statistics
Matches: 75, Mismatches: 15, Indels: 13
0.73 0.15 0.13
Matches are distributed among these distances:
41 2 0.03
42 48 0.64
43 24 0.32
44 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (41 bp):
TGCGGGAGCCTCGGGCACCATCGGCACCTGGCGCTATGATA
Found at i:63848345 original size:426 final size:426
Alignment explanation
Indices: 63847513--63848363 Score: 908
Period size: 426 Copynumber: 2.0 Consensus size: 426
63847503 GTGCCTCGGG
** * * * * *
63847513 CACCATCGGCACCTCGGTGCTTTGATGTGCGGGAGCCTCGGGCACCATTGGCAAAATAGGCCCTT
1 CACCATCGGCACCGAGGTGCTTGGATGTGCGCGAGCCACGGACACCATCGGCAAAATAGGCCCTT
* *
63847578 GGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGGAGCTTGGATGTACGGGAGACTCAGAAAC
66 GGTCATGCAAGAGCCTCGGGCACCATCGGCACCTAGCAGCTTGGATGTACGGGAGACTCAGAAAC
* *
63847643 CATCGGCAAACTAGGCCCGTGGTATTGCAGGAGCATCAGGCACCATCGGTACATGTGCGCTCGGA
131 CATCGGCAAACTAGGCCCGTGGTATTGCAGGAGCATCAGGCACCATCGGTACATGTGCCCTCAGA
* * ** * * * ** * * **
63847708 TGTGTGGGAGCCTCAGGCACCATCGGCACCTCAGTGTTGTGATGTGCGGTAGCCTCGGACACTGT
196 TATGCGAAAGCCTCAGGCACCATCGGCACATCAGCGCTCAGATGTCCGGGAGCCTCGGACACCAT
* *
63847773 CGACAACCTTCGCGCTTGGATGTACGGGAACCTCAGACACCATCGGAAACCTAGGCCCTTGGTCG
261 CGACAACCTTCGCGCTTGGATATACGGGAACCTCAGACACCATCGGAAACCAAGGCCCTTGGTCG
* * * * * *
63847838 TGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGTGGGAGCCTTGGGCACCATC
326 TGCGAGAGCCTCGAGCACCATCGACAAACTAAGCCCTTGGTCGTGCGAGAACCTCGGGCACCATC
** *
63847903 AGCAAAATTGGCCCTT-GTTCGTGCTAGAGCCTCGAC
391 AGCAAAATAAGCCCTTGGTT-GTGCGAGAGCCTCGAC
* * ** *
63847939 CACCATCGGCACCGAGGTGCTTGGATGTGCGCGAGCCACGGACACTATCGGTAACCTAGGCCTTT
1 CACCATCGGCACCGAGGTGCTTGGATGTGCGCGAGCCACGGACACCATCGGCAAAATAGGCCCTT
* * * *
63848004 GGTCATGCTAGATCCTGGGGCACCATCGGCACCTAGCTGCTTGGATGTACGGGAGACTCA-AACA
66 GGTCATGCAAGAGCCTCGGGCACCATCGGCACCTAGCAGCTTGGATGTACGGGAGACTCAGAA-A
* ** * * * * * * *
63848068 CCATCGGTAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCATTGGCTACCTAG-GCCCTT
130 CCATCGGCAAACTAGGCCCGTGGTATTGCAGGAGCATCAGGCACCATCGG-TACAT-GTGCCCTC
* * ** *
63848132 AG-TCATGCGAAAGCCTCGGGCACCATCGGCTCATGTGCGCTCAGATGTCCGGGAGCCTCGGGCA
193 AGAT-ATGCGAAAGCCTCAGGCACCATCGGCACATCAGCGCTCAGATGTCCGGGAGCCTCGGACA
* * * * * * *
63848196 CCATCGGC-ACC-TCGGTGCTAT-GATATGCGGGAGCCTCAGACACTATTGGCAACCAAGGCCCT
257 CCATCGACAACCTTC-GCGCT-TGGATATACGGGAACCTCAGACACCATCGGAAACCAAGGCCCT
** **
63848258 TGGTCGTGCCG-GAGCCTCGAGCACCATCGACAGCCTTGGCCCTTGGTCGTGCGAGAACCTCGGG
320 TGGTCGTG-CGAGAGCCTCGAGCACCATCGACAAACTAAGCCCTTGGTCGTGCGAGAACCTCGGG
* * * *
63848322 CACCATCGGTAAACTAAGCCCTTGGTTGTGCGGGAGCCTCGA
384 CACCATCAGCAAAATAAGCCCTTGGTTGTGCGAGAGCCTCGA
63848364 GTACCATCCA
Statistics
Matches: 343, Mismatches: 74, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
425 4 0.01
426 274 0.80
427 64 0.19
428 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (426 bp):
CACCATCGGCACCGAGGTGCTTGGATGTGCGCGAGCCACGGACACCATCGGCAAAATAGGCCCTT
GGTCATGCAAGAGCCTCGGGCACCATCGGCACCTAGCAGCTTGGATGTACGGGAGACTCAGAAAC
CATCGGCAAACTAGGCCCGTGGTATTGCAGGAGCATCAGGCACCATCGGTACATGTGCCCTCAGA
TATGCGAAAGCCTCAGGCACCATCGGCACATCAGCGCTCAGATGTCCGGGAGCCTCGGACACCAT
CGACAACCTTCGCGCTTGGATATACGGGAACCTCAGACACCATCGGAAACCAAGGCCCTTGGTCG
TGCGAGAGCCTCGAGCACCATCGACAAACTAAGCCCTTGGTCGTGCGAGAACCTCGGGCACCATC
AGCAAAATAAGCCCTTGGTTGTGCGAGAGCCTCGAC
Found at i:63848456 original size:171 final size:171
Alignment explanation
Indices: 63848272--63848582 Score: 435
Period size: 171 Copynumber: 1.8 Consensus size: 171
63848262 CGTGCCGGAG
* * **
63848272 CCTCGAGCACCATC-GACAGCCTTGGCCCTTGGTCGTGCGAGAACCTCGGGCACCATCGGTAAAC
1 CCTCGAACACCATCAG-CAACCTTGGCCCTTGGTCGTGCGAGAACCTCGAACACCATCGGTAAAC
* ** * * *
63848336 TAAGCCCTTGGTTGTGCGGGAGCCTCGAGTACCATCCATAAAATAGGCCCTTGGTCGTGCGAGAG
65 GAAGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCCATAAAATAAGCCCTTGGTCGTGCGAGAG
63848401 CCTCGGCCACCGTTGGCACCAAGGTGCTTGGATGTGCGGGTC
130 CCTCGGCCACCGTTGGCACCAAGGTGCTTGGATGTGCGGGTC
* *
63848443 CCTCGAACACCATCAGCAACCTTGGCCCTTGGTCGTGCGGGAACCTCGAACACCATCGGTAACCG
1 CCTCGAACACCATCAGCAACCTTGGCCCTTGGTCGTGCGAGAACCTCGAACACCATCGGTAAACG
* * ** * *
63848508 AGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGC
66 AAGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCCATAAAATAAGCCCTTGGTCGTGCGAGAGC
*
63848573 CTCGGGCACC
131 CTCGGCCACC
63848583 ATCGGCAAAA
Statistics
Matches: 120, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
171 119 0.99
172 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (171 bp):
CCTCGAACACCATCAGCAACCTTGGCCCTTGGTCGTGCGAGAACCTCGAACACCATCGGTAAACG
AAGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCCATAAAATAAGCCCTTGGTCGTGCGAGAGC
CTCGGCCACCGTTGGCACCAAGGTGCTTGGATGTGCGGGTC
Found at i:63848515 original size:214 final size:213
Alignment explanation
Indices: 63848251--63848703 Score: 613
Period size: 214 Copynumber: 2.1 Consensus size: 213
63848241 TTGGCAACCA
* * * ** *
63848251 AGGCCCTTGGTCGTGCCGGAGCCTCGAGCACCATCGACAGCCTTGGCCCTTGGTCGTGCGAGAAC
1 AGGCCCTTGGTCGTGCGGGAGCCTCGAACACCATCGACAACCGAGGCCCTTGGTCATGCGAGAAC
* *
63848316 CTCGGGCACCATCGGTAAACTAAGCCCTTGGTTGTGCGGGAGCCTCGAGTACCATC-CATAAAAT
66 CTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGCA-AAAAT
* * * * * *
63848380 AGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCGTTGGCACCAAGGTGCTTGGATGTGCGGGTCCC
130 A-GCCCTTCGTCGTACGAGAGCCTCGACCACCATCGGCACCAAGGTGCTTGGATGTGCGGGACCC
* *
63848445 TCGAACACCATCAG-CAACCT
194 TCGAACACCA-AAGACAAACT
* * ** *
63848465 TGGCCCTTGGTCGTGCGGGAACCTCGAACACCATCGGTAACCGAGGCCCTTGGTCATGCGAGAGC
1 AGGCCCTTGGTCGTGCGGGAGCCTCGAACACCATCGACAACCGAGGCCCTTGGTCATGCGAGAAC
* *
63848530 CTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATT
66 CTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC-GCAAAAAT
*
63848595 AGCCCTTCGTCGTACGAGAGCCTCGACCACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCT
130 AGCCCTTCGTCGTACGAGAGCCTCGACCACCATCGGCACCAAGGTGCTTGGATGTGCGGGACCCT
*
63848660 CGGACACCAAAGACAAACT
195 CGAACACCAAAGACAAACT
* *
63848679 AGGCCCTTCGTCTTGCGGGAGCCTC
1 AGGCCCTTGGTCGTGCGGGAGCCTC
63848704 AGGCACTATC
Statistics
Matches: 207, Mismatches: 29, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
213 2 0.01
214 198 0.96
215 5 0.02
216 2 0.01
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.19
Consensus pattern (213 bp):
AGGCCCTTGGTCGTGCGGGAGCCTCGAACACCATCGACAACCGAGGCCCTTGGTCATGCGAGAAC
CTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGCAAAAATA
GCCCTTCGTCGTACGAGAGCCTCGACCACCATCGGCACCAAGGTGCTTGGATGTGCGGGACCCTC
GAACACCAAAGACAAACT
Found at i:63848654 original size:171 final size:170
Alignment explanation
Indices: 63847797--63850635 Score: 807
Period size: 170 Copynumber: 16.6 Consensus size: 170
63847787 CTTGGATGTA
* * *
63847797 CGGGAACCTCAGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGG
* * * * * *
63847862 CAAACTAAGCCCTTGGTCGTGTGGGAGCCTTGGGCACCATCAGCAAAATTGGCCCTTGTTCGTGC
66 -AAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTAGCCCTTGGTCGTGC
* * **
63847927 TAGAGCCTCGACCACCATCGGCACCGAGGTGCTTGGAT-GTG
130 GAGAGCCTCGACCACCATCGGCACCTAGGCCCTTGG-TCGTG
* * * * * * * *
63847968 CGCGAGCCACGGACACTATCGGTAACCTAGGCCTTTGGTCATGCTAGATCCTGGGGCACCATCGG
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGG
* * * * * ** * * * *
63848033 CACCT-AGCTGCTTGGAT-GTACGGGAGACTCAAACACCATCGG-TAAACTAGGCCTTTGGTCTT
66 AAACTAAGC-CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAAAATTA-GCCCTTGGTCGT
* ** * * *
63848095 GCGGGAGCCTCGGGCACCATTGGCTACCTAGGCCCTTAGTCATG
128 GCGAGAGCCTCGACCACCATCGGC-ACCTAGGCCCTTGGTCGTG
* * * * ** *
63848139 C-GAAAGCCTCGGGCACCATCGGCT--CAT-GTGCGCTCAG--ATGTCCGGGAGCCTCGGGCACC
1 CGGGAA-CCTCGGACACCATCGG-TAACCTAG-GCCCTTGGTCATG--CGAGAGCCTCGGGCACC
* * ** ** * * * * * *
63848198 ATCGGCACCTCGGTGCTATGAT-ATGCGGGAGCCTCAGACACTATTGGCAACCAA--GGCCCTTG
61 ATCGGAAACTAAGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAA--AATTAGCCCTTG
* * *
63848260 GTCGTGCCG-GAGCCTCGAGCACCATCGACAGCCTTGGCCCTTGGTCGTG
123 GTCGTG-CGAGAGCCTCGACCACCATCGGCA-CCTAGGCCCTTGGTCGTG
* * * * ** * * * *
63848309 CGAGAACCTCGGGCACCATCGGTAAACTAAGCCCTTGGTTGTGCGGGAGCCTCGAGTACCATCCA
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCAT-CG
* * * * * * * **
63848374 TAAAATAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCGTTGGCACCAAGGT-G--CTTGGAT-G
65 GAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA--AAATTAGCCCTTGG-TCG
* ** * * *
63848435 TGCGGGTCCCTCGAACACCATCAGCAACCTTGGCCCTTGGTCGTG
127 TGCGAGAGCCTCGACCACCATCGGC-ACCTAGGCCCTTGGTCGTG
* *
63848480 CGGGAACCTCGAACACCATCGGTAACCGAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGG
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGG
* * *
63848545 TAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATTAGCCCTTCGTCGTAC
66 -AAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTAGCCCTTGGTCGTGC
* **
63848610 GAGAGCCTCGACCACCATCGGCACCAAGGTGCTTGGAT-GTG
130 GAGAGCCTCGACCACCATCGGCACCTAGGCCCTTGG-TCGTG
* ** ** * * * * * *
63848651 CGGGAGCCTCGGACACCAAAGACAAACTAGGCCCTTCGTCTTGCGGGAGCCTCAGGCACTATCGG
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGG
* * ** ** * * * ** **
63848716 CACCTTGGTACTTCGAT-GTGCGGGAGACTCGGGCACCATCGGC--ACCTAGGTGCTTGGAT-GT
66 AAACTAAGCCCTT-GGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTA-GCCCTTGG-TCGT
* * * * * * *
63848777 GCGGGAGCCTCAGA-CGCCATCGGCAAACTAGGCCCGTAGTCTTA
128 GCGAGAGCCTC-GACCACCATCGGC-ACCTAGGCCCTTGGTCGTG
* * * * * * * * **
63848821 CGGGAGCCTCGGGCACCATCGGCAAACTAAGCCATTGGTCATGCGGGAGCCTCAGGTTCCATCGG
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGG
* * * ** **
63848886 TAAAATAAGCCCATGGTCGTGCGAGAGCCTC-GACCACCATCGGC--ACCTAGGTGCTTGGAT-G
66 -AAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAAAATTA-GCCCTTGG-TCG
* ** * * *
63848947 TGCGGGAGCCTCGGA-CATAATTGGCAAACTAGGCCCTTGGTCCTG
127 TGCGAGAGCCTC-GACCACCATCGGC-ACCTAGGCCCTTGGTCGTG
* * * * * ** * * * **
63848992 CGGGAGCCTTGGGA-ACCATCGG-CACGTCGGTGCTTCGAT-GTGCGGGAGCCTCAAGCACCATC
1 CGGGAACC-TCGGACACCATCGGTAACCTAGGCCCTT-GGTCATGCGAGAGCCTCGGGCACCATC
* * * ** * ** * **
63849054 GGCGAAA-TAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAAGAGCTTGGAT-
64 -G-GAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTAGCCCTTGG-TC
* * * *
63849116 GTGCGCGAGCCTCAGA-CACCATCGGCAAACTAGGCCCGTGGTCTTG
126 GTGCGAGAGCCTC-GACCACCATCGGC-ACCTAGGCCCTTGGTCGTG
* * * * * ** * * * * *
63849162 CGGGAGCCTTGGGCACCATCGAT-ACAT-GTGTGCTCGGAT-GTGCGGGAACCTCAGGCACCATC
1 CGGGAACCTCGGACACCATCGGTAACCTAG-GCCCTTGG-TCATGCGAGAGCCTCGGGCACCATC
* * ** ** * * ** ** *
63849224 GGCACCTCGGTGCTATGAT-GTGCCGGAGCCTCGGACACTGTCGGC-AACCTAGGCCCTTGGTCA
64 GGAAACTAAGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTA-GCCCTTGGTCG
* * * ** **
63849287 TGCGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGAT-GTG
127 TGCGAGAGCCTCGACCACCATCGGCACCTAGGCCCTTGG-TCGTG
* * *
63849331 CGAGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGG
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGG
* * * *
63849396 CAAACTAAGCCTTTAGTCGTGCGGGAGCCTCAGG-CACCGTCGGCAAAATTGGCCCTTGGTCGTG
66 -AAACTAAGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAAAATTAGCCCTTGGTCGTG
** * *
63849460 CGAGAGCCTCGGGCACCATCGGTAACCTAGACCCTTGGTCGTG
129 CGAGAGCCTCGACCACCATCGG-CACCTAGGCCCTTGGTCGTG
** * * ** * ** * * *
63849503 CTAGAGCCTCGGGCACCAT-GGGCACCAAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCG
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGG-TCATGCGAGAGCCTCGGGCACCATCG
* * * * * * * ** *
63849566 ACAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACTATCGGC-TACCTAGGCCCTTGGTCAT
65 -GAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTA-GCCCTTGGTCGT
* * * * * ** **
63849630 GCGGGACCCTCGAGCACCATCGACTCCTTCGTGCTTGGAT-GTG
128 GCGAGAGCCTCGACCACCATCGGCACCTAGGCCCTTGG-TCGTG
* * ** * * *
63849673 CGGGGGGGACCCTCGG-CCCCATCGGT-ACCTCA-GTACTATGAT-GTGCGGGAGCCTCGGGCAC
1 C----GGGAACCTCGGACACCATCGGTAACCT-AGGCCCT-TGGTCATGCGAGAGCCTCGGGCAC
* ** * * ** * **
63849734 CATCGGTAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAAGTGCTTGG
60 CATCGG-AAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTAGCCCTTGG
* *
63849798 AT-GTGC-AGGAGCCACGGA-CACCATCGGCACACTAGGCCCTTGGTCTTG
124 -TCGTGCGA-GAGCCTC-GACCACCATCGGCAC-CTAGGCCCTTGGTCGTG
* * * * * * ** * * * **
63849846 CAGGAGCCTCGGGCACCATCGG-CATCAAGGTGCTTGGAT-GTGCGGGAGCCTTGAACACCATCG
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGG-TCATGCGAGAGCCTCGGGCACCATCG
* * * * * * * * * ** *
63849909 ACAAACTAGGCCTTTGGTCTTGCGGGAGCCACGGGCACTATTGGC-TACCTAGGCCCTAGGTCGT
65 -GAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTA-GCCCTTGGTCGT
* * ** * ** * *
63849973 GCGAAAGCCTTGGGCACCATCGGCACAT-GTGCGATCGGATC-TC
128 GCGAGAGCCTCGACCACCATCGGCACCTAG-GCCCTTGG-TCGTG
* * * * * * * * *
63850016 CGGGATCCTCGGGCACCATCGGTACCCCAGTG--CTATGAT-GTGCGGGAGCCTCGGACACTATC
1 CGGGAACCTCGGACACCATCGGTAACCTAG-GCCCT-TGGTCATGCGAGAGCCTCGGGCACCATC
* * * * ** * * *
63850078 AGCAACCTAGGCCCTTGGTCATGCGAAAGCCTCGGGCACCATCGGCAAAA-TAGGCCATTGGTTG
64 -GGAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTA-GCCCTTGGTCG
* ** * *
63850142 TGCTAGAGCCTCGGGCACCATCGGCACCTAGGACCTTGGAT-GCG
127 TGCGAGAGCCTCGACCACCATCGGCACCTAGGCCCTTGG-TCGTG
* * * * * * *
63850186 CGGGAGCCTCAGACACCATCGGCAAACTAGG-CCTGTGGTCTTGTGGGAGCCTCGGGCACCATCG
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCT-TGGTCATGCGAGAGCCTCGGGCACCATCG
* ** ** * * * * * ** * ** **
63850250 G-CACATGTGTGCTCAGAT-ATGCGGGAGCCTC-AAGCACCATCGAC-ACCTCAGTGCTATAAT-
65 GAAAC-TAAGCCCT-TGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAAAATTAGCCCT-TGGTC
* *
63850310 GTGCCG-GAGCCTCGGA-CACTATCGGCAACCTAGGCCCTTGGTCATG
126 GTG-CGAGAGCCTC-GACCACCATCGGC-ACCTAGGCCCTTGGTCGTG
* ** ** * * * * *
63850356 CGGGAGCCTC-GAGCACCATC-G-ACACCTTCGTGCTTAGAT-GTGCGGGAACCTCGGACACCAT
1 CGGGAACCTCGGA-CACCATCGGTA-ACCTAGGCCCTT-GGTCATGCGAGAGCCTCGGGCACCAT
* * * * * * **
63850417 CGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTAATCG
63 CGG-AAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTAGCCCTTGGTCG
* ** * ** * *
63850482 TGCGGGAGCCTCGGGCACCATCGGTAAAATTGGACCTTGGTCGTG
127 TGCGAGAGCCTCGACCACCATCGG-CACCTAGGCCCTTGGTCGTG
* * * * ** * * *
63850527 CGAGAGCCTCGGCCACCATCGG-CACCTAGGTGCTTGG--ATGTGCAGAAGCCACGGACACCATC
1 CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCG-AG-AGCCTCGGGCACCATC
* * * *
63850589 GGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACTATCGGCA
64 GG-AAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
63850636 TCAAGGTGCT
Statistics
Matches: 1999, Mismatches: 533, Indels: 272
0.71 0.19 0.10
Matches are distributed among these distances:
168 9 0.00
169 177 0.09
170 825 0.41
171 757 0.38
172 124 0.06
173 93 0.05
174 14 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (170 bp):
CGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGG
AAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAATTAGCCCTTGGTCGTGCG
AGAGCCTCGACCACCATCGGCACCTAGGCCCTTGGTCGTG
Found at i:63848751 original size:42 final size:42
Alignment explanation
Indices: 63848622--63848801 Score: 139
Period size: 42 Copynumber: 4.3 Consensus size: 42
63848612 GAGCCTCGAC
* * * *
63848622 CACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTC-GG
1 CACCATCGGCACCTAGGTACTTCGATGTGCGGGAGACTCAGG
** * * ** * *
63848663 ACACCAAAGACAAACTAGGCCCTTCG-TCTTGCGGGAGCCTCAGG
1 -CACCATCGGC-ACCTAGGTACTTCGAT-GTGCGGGAGACTCAGG
* * *
63848707 CACTATCGGCACCTTGGTACTTCGATGTGCGGGAGACTCGGG
1 CACCATCGGCACCTAGGTACTTCGATGTGCGGGAGACTCAGG
* * * *
63848749 CACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCAGA
1 CACCATCGGCACCTAGGTACTTCGATGTGCGGGAGACTCAGG
*
63848791 CGCCATCGGCA
1 CACCATCGGCA
63848802 AACTAGGCCC
Statistics
Matches: 106, Mismatches: 28, Indels: 8
0.75 0.20 0.06
Matches are distributed among these distances:
42 76 0.72
43 28 0.26
44 2 0.02
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (42 bp):
CACCATCGGCACCTAGGTACTTCGATGTGCGGGAGACTCAGG
Found at i:63848868 original size:298 final size:295
Alignment explanation
Indices: 63848024--63849615 Score: 1185
Period size: 298 Copynumber: 5.3 Consensus size: 295
63848014 GATCCTGGGG
* * * * ** * ** *
63848024 CACCATCGGCACCTAGCTGCTTGGATGTACGGGAGACTCAAACACCATCGGTAAACTAGGCCTTT
1 CACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCAACGACAAACTAGGCCCTT
* * ** * * ** *
63848089 GGTCTTGCGGGAGCCTCGGGCACCATTGGCTACCTAGGCCCTTAG-TCATGCGAAAGCCTCGGGC
66 GGTCTTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTCGAT-GTGCGGGAGACTCGGGC
* * * * * * * * *
63848153 ACCATCGGCTCAT-GTGCGCTCAGATGTCCGGGAGCCTCGGGCACCATCGGC-ACCTCGG--TGC
129 ACCATCGGCACCTAG-GC-CT-TGGTGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCTG-
* * * * * *
63848214 TATGAT-ATGCGGGAGCCTCAGACACTATTGGC-AACCAAGGCCCTTGGTCGTGCCGGAGCCTCG
190 TA-G-TCGTGCGGGAGCCTCAGGCACCATCGGCAAACTAA-GCCCTTGGTCGTGCGGGAGCCTCG
* ** * * * **
63848277 AGCACCATC-GACAGCCTTGGCCCTTGGTCGTGCGAGAACCTCGGG
252 GGCACCATCGGA-A-AATTAGCCCTTCGTCGTGCGAGAGCCTCGAC
* * ** * * * * * *
63848322 CACCATCGGTAAACTAA-GCCCTTGGTTGTGCGGGAGCCTC-GAGTACCATCCATAAAATAGGCC
1 CACCATCGG--CACCAAGGTGCTTGGATGTGCGGGAGCCTCGGA-CACCAACGACAAACTAGGCC
* * * * * ** * *** **
63848385 CTTGGTCGTGCGAGAGCCTCGGCCACCGTTGGCACCAAGGTGCTTGGATGTGCGGGTCCCTCGAA
63 CTTGGTCTTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTCGATGTGCGGGAGACTCGGG
* * * * * * * *
63848450 CACCATCAGCAACCTTGGCCCTTGGTCGTGCGGGAACCTCGAACACCATCGGTAACCGAGGCCCT
128 CACCATCGGC-ACCTAGG-CCTTGGT-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGG-CCT
* * * * *
63848515 -TGGTCATGCGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGG
189 GTAGTCGTGCGGGAGCCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGG
*
63848579 CACCATCGGCAAAATTAGCCCTTCGTCGTACGAGAGCCTCGAC
254 CACCATCGG-AAAATTAGCCCTTCGTCGTGCGAGAGCCTCGAC
*
63848622 CACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCAAAGACAAACTAGGCCCTT
1 CACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCAACGACAAACTAGGCCCTT
* * * *
63848687 CGTCTTGCGGGAGCCTCAGGCACTATCGGCACCTTGGTACTTCGATGTGCGGGAGACTCGGGCAC
66 GGTCTTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTCGATGTGCGGGAGACTCGGGCAC
* * * * *
63848752 CATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCAGACGCCATCGGCAAACTAGGCCCGTAGT
131 CATCGGCACCTAGG-CCTTGG-TGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCTGTAGT
* * * * * * **
63848817 CTTACGGGAGCCTCGGGCACCATCGGCAAACTAAGCCATTGGTCATGCGGGAGCCTCAGGTTCCA
194 CGTGCGGGAGCCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * *
63848882 TCGGTAAAATAAGCCCATGGTCGTGCGAGAGCCTCGAC
259 TCGG-AAAATTAGCCCTTCGTCGTGCGAGAGCCTCGAC
* * * *
63848920 CACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACA-TAATTGGCAAACTAGGCCCT
1 CACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCAA-CGACAAACTAGGCCCT
* * * * * * **
63848984 TGGTCCTGCGGGAGCCTTGGGAACCATCGGCACGTCGGTGCTTCGATGTGCGGGAGCCTCAAGCA
65 TGGTCTTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTCGATGTGCGGGAGACTCGGGCA
** * * * *
63849049 CCATCGGCGAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAAGAGCTTG
130 CCATCGGC-ACCTAGGCC-TTGG-TGTGCGAGAGCCTCGGACACCATCGGCAAACT-AG-GCCTG
* * * * * * *
63849113 GA-T-GTGCGCGAGCCTCAGACACCATCGGCAAACTAGGCCCGTGGTCTTGCGGGAGCCTTGGGC
190 TAGTCGTGCGGGAGCCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGC
* ** * * *
63849176 ACCATC-GATACATGT-GTGC-TCGGAT-GTGCGGGAACCTC-AGG
255 ACCATCGGA-AAAT-TAGCCCTTC-G-TCGTGCGAGAGCCTCGA-C
** * *** * *
63849217 CACCATCGGCACCTCGGTGCTAT-GATGTGCCGGAGCCTCGGACACTGTCGGCAACCTAGGCCCT
1 CACCATCGGCACCAAGGTGCT-TGGATGTGCGGGAGCCTCGGACACCAACGACAAACTAGGCCCT
* * * * * * *
63849281 TGGTCATGCGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGAGA-ACCTCGGAC
65 TGGTCTTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTCGATGTGCGGGAGA-CTCGGGC
* * *
63849345 ACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCAAACTAAGCCTTT
129 ACCATCGG-CACCTAGG-CCTTGGT-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCTGT
* * ** *
63849410 AGTCGTGCGGGAGCCTCAGGCACCGTCGGCAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
191 AGTCGTGCGGGAGCCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * * **
63849475 CCATCGGTAACCTAGACCCTTGGTCGTGCTAGAGCCTCGGG
256 CCATCGGAAAATTAG-CCCTTCGTCGTGCGAGAGCCTCGAC
* * *
63849516 CACCATGGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCTTT
1 CACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCAACGACAAACTAGGCCCTT
*
63849581 GGTCTTGCGGGAGCCTCGGGCACTATCGGCTACCT
66 GGTCTTGCGGGAGCCTCGGGCACCATCGGC-ACCT
63849616 AGGCCCTTGG
Statistics
Matches: 1019, Mismatches: 228, Indels: 92
0.76 0.17 0.07
Matches are distributed among these distances:
296 8 0.01
297 169 0.17
298 418 0.41
299 309 0.30
300 105 0.10
301 8 0.01
302 1 0.00
303 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (295 bp):
CACCATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCAACGACAAACTAGGCCCTT
GGTCTTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTCGATGTGCGGGAGACTCGGGCAC
CATCGGCACCTAGGCCTTGGTGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCTGTAGTCG
TGCGGGAGCCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGAAAATTAGCCCTTCGTCGTGCGAGAGCCTCGAC
Found at i:63849623 original size:128 final size:127
Alignment explanation
Indices: 63847539--63850674 Score: 1540
Period size: 128 Copynumber: 24.5 Consensus size: 127
63847529 GTGCTTTGAT
* ** **
63847539 GTGCGGGAGCCTCGGGCACCATTGGCAAAATAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * *
63847604 CGGCACCTAGGAGCTTGGATGTACGGGAGACTCAGAAACCATCGGCAAACTAGGCCCGTGGTA
65 CGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * * * * * * * * *
63847667 TTGCAGGAGCATCAGGCACCATCGGTACAT-GTGCGCTCGGAT-GTGTGGGAGCCTCAGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* ** * * ** *
63847730 TCGGCACCTCA-GTG-TTGTGATGTGCGGTAGCCTCGGACACTGTCGACAACCTTCGCGCTTGGA
64 TCGGCACCT-AGGTGCTTG-GATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-
63847793 T-
126 TC
* * * * * *
63847794 GTACGGGAACCTCAGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * ** * * * * * * *
63847859 CGGCAAACTAAGCCCTTGG-TCGTGTGGGAGCCTTGGGCACCATCAGCAAAATTGGCCCTTGTTC
65 CGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
** ** * ** * * * *
63847923 GTGCTAGAGCCTCGACCACCATCGGCACCGAGGTGCTTGGAT-GTGCGCGAGCCACGGACACTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* * * ** * * * * *
63847987 CGGTAACCTAGG-CCTTTGG-TCATGCTAGATCCTGGGGCACCATCGGC-ACCTA-GCTGCTTGG
65 CGG-CACCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGC-CCTTGG
63848048 AT-
126 -TC
* * *** * * * *
63848050 GTACGGGAGACTCAAACACCATCGGTAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* ** * * ** * ** * * *
63848115 TGGCTACCTAGGCCCTTAG-TCATGCGAAAGCCTCGGGCACCATCGGCTCA-T-GTGCGCTCAGA
65 CGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAG-GCCCT-TGG
63848177 T-
126 TC
* * ** * * * * *
63848178 GTCCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGAT-ATGCGGGAGCCTCAGACACTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCAT
* * ** * * ** *
63848242 TGGCAACCAAGGCCCTTGG-TCGTGCCGGAGCCTC-GAGCACCATCGACAGCCTTGGCCCTTGGT
65 CGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGGT
63848305 C
127 C
* * * * * * * *
63848306 GTGCGAGAACCTCGGGCACCATCGGTAAACTAAGCCCTTGGTTGTGCGGGAGCCTCGAGTACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*** ** ** * * * * * * **
63848371 CCATAAAATAGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCGTTGGC-ACCAAGGTGCTTGGAT
65 -CGGCACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
63848434 -
127 C
** ** * * * **
63848434 GTGCGGGTCCCTCGAACACCATCAGCAACCTTGGCCCTTGGTCGTGCGGGAACCTCGAACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * ** * * * * *
63848499 CGGTAACCGAGGCCCTTGG-TCATGCGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTC
65 CGG-CACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
** * * * **
63848563 GTGCGGGAGCCTCGGGCACCATCGGCAAAATTA-GCCCTTCGTCGTACGAGAGCCTCGACCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC--ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* ** * *
63848627 TCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCAAAGACAAACTAGGCCCTTCGTC
64 TCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * * * ** * *
63848691 TTGCGGGAGCCTCAGGCACTATCGGCACCTTGGTACTTCGAT-GTGCGGGAGACTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCAT
* * * *
63848755 CGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCAGACGCCATCGGCAAACTAGGCCCGTAGTC
65 CGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * * * * * * **
63848818 TTACGGGAGCCTCGGGCACCATCGGCAAACTAAGCCATTGGTCATGCGGGAGCCTCAGGTTCCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* ** * ** * * * **
63848883 CGGTAAAATAAGCCCATGG-TCGTGCGAGAGCCTC-GACCACCATCGGC-ACCTAGGTGCTTGGA
65 CGG-CACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-
63848945 T-
126 TC
* ** * * * * *
63848946 GTGCGGGAGCCTCGGACATAATTGGCAAACTAGGCCCTTGGTCCTGCGGGAGCCTTGGGAACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * *
63849011 CGGCACGTCGGTGCTTCGATGTGCGGGAGCCTC-AAGCACCATCGGCGAAA-TAGGCCATTGGTT
65 CGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGA-CACCATCGGC-AAACTAGGCCCTTGGTC
** * ** * * *
63849074 GTGCTAGAGCCTCGGGCACCATCGGCACCTAAGAGCTTGGAT-GTGCGCGAGCCTCAGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* ** * * * * * ** *
63849138 CGGCAAACTAGGCCCGTGG-TCTTGCGGGAGCCTTGGGCACCATC-G-ATAC-ATGTGTGCTCGG
65 CGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTA-G-GCCCTTGG
63849199 AT-
126 -TC
* * * ** * * * **
63849201 GTGCGGGAACCTCAGGCACCATCGGCACCTCGGTGCTATGAT-GTGCCGGAGCCTCGGACACTGT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCAT
** * * * ** **
63849265 CGGCAACCTAGGCCCTTGG-TCATGCGGGAGCCTC-GAGCACCATCGAC-ACCTTCGTGCTTGGA
65 CGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-
63849327 T-
126 TC
* * * * * *
63849328 GTGCGAGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * *
63849393 CGGCAAACTAAG-CCTT-TAGTCGTGCGGGAGCCTCAGG-CACCGTCGGCAAAATTGGCCCTTGG
65 CGGC-ACCTAGGTGCTTGGA-T-GTGCGGGAGCCTC-GGACACCATCGGCAAACTAGGCCCTTGG
63849455 TC
126 TC
* * * **
63849457 GTGCGAGAGCCTCGGGCACCATCGGTAACCTAGACCCTTGGTCGTGCTAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * *
63849522 GGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCTTTGGTC
65 CGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * * * *
63849585 TTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTTGGTCATGCGGGACCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * ** * * * * **
63849650 CGACTCCTTCGTGCTTGGATGTGCGGGGGGGACCCTCGG-CCCCATCGG-TACCTCA-GTACTAT
65 CGGCACCTAGGTGCTTGGATGTGC----GGGAGCCTCGGACACCATCGGCAAACT-AGGCCCT-T
*
63849712 GAT-
124 GGTC
* ** * * *
63849715 GTGCGGGAGCCTCGGGCACCATCGGTAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * *
63849780 CGGCACCTAAGTGCTTGGATGTGCAGGAGCCACGGACACCATCGGCACACTAGGCCCTTGGTC
65 CGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * * * ** * **
63849843 TTGCAGGAGCCTCGGGCACCATCGGCATCAAGGTGCTTGGAT-GTGCGGGAGCCTTGAACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* * * * * * * * * * *
63849907 CGACAAACTAGG-CCTTTGG-TCTTGCGGGAGCCACGGGCACTATTGGCTACCTAGGCCCTAGGT
65 CGGC-ACCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGT
63849970 C
127 C
** * * ** * * *
63849971 GTGCGAAAGCCTTGGGCACCATCGGCACAT-GTGCGATCGGATC-TCCGGGATCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* * * * *
63850034 TCGGTACCCCA-GTGCTAT-GATGTGCGGGAGCCTCGGACACTATCAGCAACCTAGGCCCTTGGT
64 TCGGCA-CCTAGGTGCT-TGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGT
63850097 C
127 C
* ** ** * * **
63850098 ATGCGAAAGCCTCGGGCACCATCGGCAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
** * *
63850163 CGGCACCTAGGACCTTGGATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGG-CCTGTGGTC
65 CGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** * * * **
63850226 TTGTGGGAGCCTCGGGCACCATCGGCACAT-GTGTGCTCAGAT-ATGCGGGAGCCTCAAGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCACCA
* * * * *
63850289 TCGACACCTCA-GTGCTAT-AATGTGCCGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGT
64 TCGGCACCT-AGGTGCT-TGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGT
63850352 C
127 C
* * * ** ** * * *
63850353 ATGCGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTAGAT-GTGCGGGAACCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCAT
** * * * **
63850417 CGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTAATC
65 CGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* ** * * * *
63850481 GTGCGGGAGCCTCGGGCACCATCGGTAAAATTGGACCTTGGTCGTGCGAGAGCCTCGGCCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
63850546 CGGCACCTAGGTGCTTGGATGTGCAGAAGCCACGGACACCATCGGCAAACTAGGCCCTTGGTC
65 CGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
* * * * ** **
63850609 TTGCGGGAGCCTCGGGCACTATCGGCATCAAGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
63850673 CG
65 CG
63850675 ACAAACTAGG
Statistics
Matches: 2271, Mismatches: 616, Indels: 243
0.73 0.20 0.08
Matches are distributed among these distances:
125 3 0.00
126 20 0.01
127 740 0.33
128 1087 0.48
129 313 0.14
130 87 0.04
131 11 0.00
132 10 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (127 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
Found at i:63850208 original size:383 final size:382
Alignment explanation
Indices: 63849722--63850732 Score: 1259
Period size: 383 Copynumber: 2.6 Consensus size: 382
63849712 GATGTGCGGG
63849722 AGCCTCGGGCACCATCGGTAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACC
1 AGCCTCGGGCACCATCGGTAAAATTGG-CCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACC
* * *
63849787 TAAGTGCTTGGATGTGCAGGAGCCACGGACACCATCGGCACACTAGGCCCTTGGTCTTGCAGGAG
65 TAGGTGCTTGGATGTGCAGGAGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAG
63849852 CCTCGGGCACCATCGGCATCAAGGTGCTTGGATGTGCGGGAGCCTTGAACACCATCGACAAACTA
130 CCTCGGGCACCATCGGCATCAAGGTGCTTGGATGTGCGGGAGCCTTGAACACCATCGACAAACTA
* * *
63849917 GGCCTTTGGTCTTGCGGGAGCCACGGGCACTATTGGCTACCTAGGCCCTAGGTCGTGCGAAAGCC
195 GGCCTTTGGTCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGGTCATGCGAAAGCC
* * * * * * * *
63849982 TTGGGCACCATCGGCA-CAT-GTGCGATCGGATCTCCGGGATCCTCGGGCACCATCGGTACCCCA
260 TCGAGCACCATCGACACCATCGTGC--TCAGATCTCCGGGAACCTCGGACACCATCGGCAACCCA
* * * * **
63850045 GTG-CTATGAT-GTGCGGGAGCCTCGGACACTATCAGCAACCTAGGCCCTTGGTCATGCGAA
323 G-GCCT-TGATCGTGCGAGAGCCTCGGACACCATCAGCAAACTAAGCCCTTAATCATGCGAA
* * * * *
63850105 AGCCTCGGGCACCATCGGCAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCACC
1 AGCCTCGGGCACCATCGGTAAAATTGGCC-TTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACC
** * * * * *
63850170 TAGGACCTTGGATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGG-CCTGTGGTCTTGTGGGA
65 TAGGTGCTTGGATGTGCAGGAGCCACGGACACCATCGGCAAACTAGGCCCT-TGGTCTTGCGGGA
* ** * * *
63850234 GCCTCGGGCACCATCGGCA-CATGTGTGCTCAGATATGCGGGAGCC-TCAAGCACCATCGAC-AC
129 GCCTCGGGCACCATCGGCATCAAG-GTGCTTGGATGTGCGGGAGCCTTGAA-CACCATCGACAAA
* ** * * * * * *
63850296 CTCAGTG-CTATAAT-GTGCCGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCATGCGG
192 CT-AG-GCCTTTGGTCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGGTCATGCGA
* * * * *
63850359 GAGCCTCGAGCACCATCGACACCTTCGTGCTTAGATGTGCGGGAACCTCGGACACCATCGGCAAC
255 AAGCCTCGAGCACCATCGACACCATCGTGCTCAGATCTCCGGGAACCTCGGACACCATCGGCAAC
* * * * * **
63850424 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTAATCGTGCGGG
320 CCAGG-CCTTGATCGTGCGAGAGCCTCGGACACCATCAGCAAACTAAGCCCTTAATCATGCGAA
63850488 AGCCTCGGGCACCATCGGTAAAATTGGACCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACC
1 AGCCTCGGGCACCATCGGTAAAATTGG-CCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACC
*
63850553 TAGGTGCTTGGATGTGCAGAAGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAG
65 TAGGTGCTTGGATGTGCAGGAGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAG
* *
63850618 CCTCGGGCACTATCGGCATCAAGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAAACTA
130 CCTCGGGCACCATCGGCATCAAGGTGCTTGGATGTGCGGGAGCCTTGAACACCATCGACAAACTA
* *
63850683 GGCCTTTGGTCTTACGGGAGCCTCGGGCACTATCGACTACCTAGGCCCTA
195 GGCCTTTGGTCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTA
63850733 TTGTCACGGG
Statistics
Matches: 520, Mismatches: 90, Indels: 35
0.81 0.14 0.05
Matches are distributed among these distances:
381 1 0.00
382 105 0.20
383 364 0.70
384 50 0.10
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (382 bp):
AGCCTCGGGCACCATCGGTAAAATTGGCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCT
AGGTGCTTGGATGTGCAGGAGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGC
CTCGGGCACCATCGGCATCAAGGTGCTTGGATGTGCGGGAGCCTTGAACACCATCGACAAACTAG
GCCTTTGGTCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGGTCATGCGAAAGCCT
CGAGCACCATCGACACCATCGTGCTCAGATCTCCGGGAACCTCGGACACCATCGGCAACCCAGGC
CTTGATCGTGCGAGAGCCTCGGACACCATCAGCAAACTAAGCCCTTAATCATGCGAA
Found at i:63850643 original size:85 final size:85
Alignment explanation
Indices: 63848094--63850717 Score: 1394
Period size: 85 Copynumber: 30.8 Consensus size: 85
63848084 CCTTTGGTCT
* * * * * * **
63848094 TGCGGGAGCCTCGGGCACCATTGGCTACCTAGGCCCTTAGTCATGCGAAAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * **
63848159 GGC-TCATGTGCGCTCAGATG
66 GGCACCAAG-GTGCTTGGATG
* * * * ** * * * * *
63848179 TCCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-ATGCGGGAGCCTCAGACACTAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCAT
* **
63848242 TGGCAACCAAGGCCCTTGG-TCG
65 CGGC-ACCAAGGTGCTTGGAT-G
* * ** * * *
63848264 TGCCGGAGCCTC-GAGCACCATCGACAGCCTTGGCCCTTGGTCGTGCGAGAACCTCGGGCACCAT
1 TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * ** *
63848328 CGGTAAACTAA-GCCCTTGGTTG
65 CGG--CACCAAGGTGCTTGGATG
* *** * * * *
63848350 TGCGGGAGCCTC-GAGTACCATCCATAAAATAGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCGT
1 TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
63848414 TGGCACCAAGGTGCTTGGATG
65 CGGCACCAAGGTGCTTGGATG
** * * * * * **
63848435 TGCGGGTCCCTCGAACACCATCAGCAACCTTGGCCCTTGGTCGTGCGGGAACCTCGAACACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * ** *
63848500 GGTAACCGAGGCCCTTGG-TCA
66 GG-CACCAAGGTGCTTGGAT-G
* * * *
63848521 TGCGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
** *
63848586 GGCA--AAATTAGCCCTTCG-TCG
66 GGCACCAAGGT-G--CTTGGAT-G
* * * * ** *
63848607 TACGAGAGCCTC-GACCACCATCGGC-ACCAAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
1 TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
** * * * ** * *
63848669 AAGACAAACTAGGCCCTTCG-TCT
64 TCGGC-ACCAAGGTGCTTGGAT-G
* * * ** * *
63848692 TGCGGGAGCCTCAGG-CACTATCGGC-ACCTTGGTACTTCGAT-GTGCGGGAGACTCGGGCACCA
1 TGCGGGAGCCTC-GGACACCATCGGCAAACTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCA
*
63848754 TCGGCACCTAGGTGCTTGGATG
64 TCGGCACCAAGGTGCTTGGATG
* * * * * *
63848776 TGCGGGAGCCTCAGACGCCATCGGCAAACTAGGCCCGTAGTCTTACGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
63848841 GGCAAACTAA-G-CCATTGG-TCA
66 GGC--ACCAAGGTGC-TTGGAT-G
** * * * * * **
63848862 TGCGGGAGCCTCAGG-TTCCATCGGTAAAATAAGCCCATGGTCGTGCGAGAGCCTCGACCACCAT
1 TGCGGGAGCCTC-GGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
63848926 CGGCACCTAGGTGCTTGGATG
65 CGGCACCAAGGTGCTTGGATG
** * * * *
63848947 TGCGGGAGCCTCGGACATAATTGGCAAACTAGGCCCTTGGTCCTGCGGGAGCCTTGGGAACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*** *
63849012 GGCACGTCGGTGCTTCGATG
66 GGCACCAAGGTGCTTGGATG
* * * **
63849032 TGCGGGAGCCTC-AAGCACCATCGGCGAAA-TAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCA
1 TGCGGGAGCCTCGGA-CACCATCGGC-AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
*
63849095 TCGGCACCTAA-GAGCTTGGATG
64 TCGGCACC-AAGGTGCTTGGATG
* * * * *
63849117 TGCGCGAGCCTCAGACACCATCGGCAAACTAGGCCCGTGGTCTTGCGGGAGCCTTGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
** * *
63849182 GATA-CATGTGTGCTCGGATG
66 GGCACCAAG-GTGCTTGGATG
* * * ** * * * **
63849202 TGCGGGAACCTCAGG-CACCATCGGC-ACCTCGGTGCTATGAT-GTGCCGGAGCCTCGGACACTG
1 TGCGGGAGCCTC-GGACACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCA
* ** *
63849264 TCGGCAACCTAGGCCCTTGG-TCA
64 TCGGC-ACCAAGGTGCTTGGAT-G
* * ** ** * * *
63849287 TGCGGGAGCCTC-GAGCACCATCGAC-ACCTTCGTGCTTGGAT-GTGCGAGAACCTCGGACACCA
1 TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* * **
63849349 TCGGTAACCTAGGCCCTTGG-TCG
64 TCGG-CACCAAGGTGCTTGGAT-G
* * * * * *
63849372 TGCGAGAGCCTCGGACACCATCGGCAAACTAAGCCTTTAGTCGTGCGGGAGCCTCAGGCACCGTC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* **
63849437 GGCA-AAATTGGCCCTTGG-TCG
66 GGCACCAA--GGTGCTTGGAT-G
* * * * * ** *
63849458 TGCGAGAGCCTCGGGCACCATCGGTAACCTAGACCCTTGGTCGTGCTAGAGCCTCGGGCACCATG
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
63849523 GGCACCAAGGTGCTTGGATG
66 GGCACCAAGGTGCTTGGATG
* * * *
63849543 TGCGGGAGCCTCGGACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACTATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* ** *
63849608 GGCTACCTAGGCCCTTGG-TCA
66 GGC-ACCAAGGTGCTTGGAT-G
* * ** ** ** *
63849629 TGCGGGACCCTC-GAGCACCATCGAC-TCCTTCGTGCTTGGAT-GTGCGGGGGGGACCCTC-GGC
1 TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGC----GGGAGCCTCGGGC
* * * *
63849690 CCCATCGGTACCTCA-GTACTAT-GATG
60 ACCATCGGCACC-AAGGTGCT-TGGATG
* * * * * *
63849716 TGCGGGAGCCTCGGGCACCATCGGTAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
63849781 GGCACCTAA-GTGCTTGGATG
66 GGCACC-AAGGTGCTTGGATG
* * * * *
63849801 TGCAGGAGCCACGGACACCATCGGCACACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
63849866 GGCATCAAGGTGCTTGGATG
66 GGCACCAAGGTGCTTGGATG
* * * * * * * *
63849886 TGCGGGAGCCTTGAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCCACGGGCACTATT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* ** *
63849951 GGCTACCTAGGCCCTAGG-TCG
66 GGC-ACCAAGGTGCTTGGAT-G
** * * * ** * * *
63849972 TGCGAAAGCCTTGGGCACCATCGGCACA-T-GTGCGATCGGATC-TCCGGGATCCTCGGGCACCA
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* *
63850034 TCGGTACCCCA-GTGCTAT-GATG
64 TCGGCA-CCAAGGTGCT-TGGATG
* * * * **
63850056 TGCGGGAGCCTCGGACACTATCAGCAACCTAGGCCCTTGGTCATGCGAAAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
** * *
63850121 GGCAAAATAGG-CCATTGGTTG
66 GGCACCA-AGGTGC-TTGGATG
** * * * * * *
63850142 TGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGACCTTGGAT-GCGCGGGAGCCTCAGACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* * * *
63850205 CGGCAAACTAGG-CCTGTGG-TCT
65 CGGC-ACCAAGGTGCT-TGGAT-G
* * * ** * * * **
63850227 TGTGGGAGCCTCGGGCACCATCGGCACA-T-GTGTGCTCAGAT-ATGCGGGAGCCTCAAGCACCA
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCACCA
* * *
63850289 TCGACACCTCA-GTGCTAT-AATG
64 TCGGCACC-AAGGTGCT-TGGATG
* * * * *
63850311 TGCCGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* *** *
63850376 GACACCTTCGTGCTTAGATG
66 GGCACCAAGGTGCTTGGATG
* * *
63850396 TGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* ** *
63850461 GGCAAACTAA-GCCCTT-AATCG
66 GGC--ACCAAGGTGCTTGGAT-G
* * * * * * *
63850482 TGCGGGAGCCTCGGGCACCATCGGTAAAATTGGACCTTGGTCGTGCGAGAGCCTCGGCCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
63850547 GGCACCTAGGTGCTTGGATG
66 GGCACCAAGGTGCTTGGATG
* * * * *
63850567 TGCAGAAGCCACGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACTATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
63850632 GGCATCAAGGTGCTTGGATG
66 GGCACCAAGGTGCTTGGATG
* * * * * *
63850652 TGCGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGGTCTTACGGGAGCCTCGGGCACTATC
1 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
63850717 G
66 G
63850718 ACTACCTAGG
Statistics
Matches: 1934, Mismatches: 493, Indels: 224
0.73 0.19 0.08
Matches are distributed among these distances:
83 4 0.00
84 176 0.09
85 1161 0.60
86 518 0.27
87 41 0.02
88 26 0.01
89 8 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (85 bp):
TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCACCAAGGTGCTTGGATG
Found at i:63853644 original size:43 final size:42
Alignment explanation
Indices: 63853597--63853724 Score: 177
Period size: 43 Copynumber: 3.0 Consensus size: 42
63853587 GAACCTCAGA
* *
63853597 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGG
1 CACCATCGGCAAACTA-GCCCTTGGTCGTGCGAGAGCCTCGGG
*
63853640 CACCATCGGCAAACTAAGCCCTTGGTCGAGC-AGGAGCCTCGGG
1 CACCATCGGCAAACT-AGCCCTTGGTCGTGCGA-GAGCCTCGGG
*
63853683 CACCATCGGCAAAATTAGCCCTTGGTCGTGCGAGAGCCTCGG
1 CACCATCGGC-AAACTAGCCCTTGGTCGTGCGAGAGCCTCGG
63853725 TGCTTGGATG
Statistics
Matches: 76, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
42 1 0.01
43 69 0.91
44 6 0.08
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.17
Consensus pattern (42 bp):
CACCATCGGCAAACTAGCCCTTGGTCGTGCGAGAGCCTCGGG
Found at i:63853872 original size:85 final size:84
Alignment explanation
Indices: 63853731--63864975 Score: 4632
Period size: 85 Copynumber: 132.4 Consensus size: 84
63853721 TCGGTGCTTG
* * * * * * *
63853731 GATGTGCGGGAGCCACAGACACTATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGGGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
*
63853796 CATCGGCACCTAGGTGCTT
66 CATCGGCACCTAGGTCCTT
* **
63853815 CGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTCGTGCTAGAGCCT-GTGGC
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GGC
*
63853879 ACCATCGGCACCTAGGTGCTT
64 ACCATCGGCACCTAGGTCCTT
* * * * * *
63853900 GGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
63853965 CCAGCGGAACATGTATGAT-C-G
65 CCATCGG--CACCTA-GGTCCTT
* ** ** * * *** * *
63853986 GTTGTGCAAGAGCCTCAAGCACCATCGG-TACCTCGATGCTATGAT-GTGTC-GGAGCCTCGGAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTG-CGGGAGCCTCGGGC
* * *
63854048 ACTATTGGCAACCTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * * ** ** * *
63854070 GGTCATGCAGGAGCCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-GTGCGGGAACCTCGGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * *
63854133 ACGATTGGCAACCTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * * * * *
63854155 GGTCGTGCGAGAGCCTCGGTCACCATCGGCAAACTAAGCCTTTGGTCGTGCGGGAGCGTCGGACA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
63854220 CCGTCGGCAACATTGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* * ** * * *** * *
63854241 GGTCGTGCGAGAGCCT-TAGCAACCATCGAC-ACTTAGGTGGTTGGAT-GTGCGGGAGCCTTGGC
1 GAT-GTGCGGGAGCCTCGGGC-ACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * *
63854303 CACTATTGGCACCTAGGTGCTT
63 CACCATCGGCACCTAGGTCCTT
* * * * * ** * * * * *
63854325 GGATGTGTGAGAGCCTCGGACACCACCGGTAAAGTAGACCCTCGGTCTTGCGGGAGCGTCGAGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
63854390 CCATCGGCACCCT-GATTCTT
65 CCATCGGCA-CCTAGGTCCTT
* * **
63854410 CGATGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCTAGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
63854475 CCATCGGCACCAAGGTGCTT
65 CCATCGGCACCTAGGTCCTT
** * * * *
63854495 GGATGTGCGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63854560 CTATCGGCTACCTAGGCCCTA
65 CCATCGGC-ACCTAGGTCCTT
* ** * * * * *
63854581 GGTCGTGCGAAAGCCTCGGGCACCATCGGC-ACAT-GTGCGCTCAGAT-GTCCGGGAGCCTCGGG
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCT-TGGTCGTGCGGGAGCCTCGGG
* * *
63854643 CACAATCGGTACCTCA-GTACTAT
63 CACCATCGGCACCT-AGGTCCT-T
* * * * **
63854666 GATGTGCGGGAGCCTCGGACACTATCAGCAACCTACGCCCTTGGTCGTGCGAAAGCCTCGGGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
** *
63854731 CATCGGCAAAATAAG-CCATT
66 CATCGGC-ACCTAGGTCC-TT
* ** * * * *
63854751 GGTTGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGACCTTGGAT-GTGCGGGTGCCTCAGAC
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * *
63854814 ACCAT-GGACAAACTAGGCCCGT
64 ACCATCGG-C-ACCTAGGTCCTT
* * * * * ** * *
63854836 CATCTTGCAGGAGCCTCGGGCACCATCAGC-ACAT-GTGTGCTCGGAT-GTGCGGGAGCCTCAGG
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGG
* *
63854898 CACCATCGGCACCTCGGTGCTAT
63 CACCATCGGCACCTAGGTCCT-T
* * * ** * * * * *
63854921 GATGTGCCGGAGCCTCCGACACTGTCGGCAACGTAGGCTCTTGGTCATCCGGGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
** ** *
63854986 CATCAACACCTTCGTGCTT
66 CATCGGCACCTAGGTCCTT
* * **
63855005 GGATGTCCGGGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCTAGAGCCT-GTGGC
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GGC
* *
63855069 ACCATCGGTACCTAGGTGCTT
64 ACCATCGGCACCTAGGTCCTT
* * * * * *
63855090 GGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63855155 CCATCGGCACAT-GTGTGCTCG
65 CCATCGGCACCTAG-GTCCT-T
* * ** * * ** * * *
63855176 GTTGTGCAGGAGCCTCAAGCACCATCGG-TACCTCGGTGCTATGAT-GTGCCGGAGCCTCGGACA
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCA
* *
63855239 CTATCGGCAACCTAGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* * * * ** ** * * *
63855260 GGTCATGCGGGAGCCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-GTGCGGGAACCTCAGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
*
63855323 ACCATCGGCAACCTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * * * *
63855345 GGTCGTGCGAGAGCCTTGGGCACCATCGGTAAACTAAGCCTTTGGTCGTGCGGGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
63855410 CCGTCGGCAACATTGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* * ** * * * * ** * *
63855431 GGTCGTGCGAGAGCCTTAGCCACCATTGAC-ACTTAGGTGCTTGGAT-GTACGGGAGCCTCGGCC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * *
63855494 ACTATTGGCACCTAGGTGCTT
64 ACCATCGGCACCTAGGTCCTT
* * * * ** * * *
63855515 GGATGTGTGAGAGCCTCGGACACCACCGGCAAAGTAGACCCTTGGTCTTGCGGGAGCCTCGAGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
63855580 CCATCGGCACCCT-GATTCTT
65 CCATCGGCA-CCTAGGTCCTT
* * **
63855600 CGATGTGCGAGAGCCTCGGGCACCATCGGCGACCTAGGCCCTTGGTCGTGCTAGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63855665 CCATCGGCACCAAGTTACTT
65 CCATCGGCACCTAGGTCCTT
** ** * * ** *
63855685 GGATGTGCGGGAGCCTCGGGCACTGTCAACTACCTAGGCCCTAGGTCGTGCGAAAGCCTCGAGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*** * *
63855750 CCATTACCA-C-ATGTGCGCTCG
65 CCATCGGCACCTAGGT-C-CT-T
* * * * *
63855771 GATGTCCGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-GTGCGGGAGGCTCGGA
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGG
* * *
63855832 CACTATCAGCAACCTAGGCCCTT
63 CACCATCGGC-ACCTAGGTCCTT
* ** * ** * * **
63855855 GGTCGTGCGAAAGCCTTGGGCACCATCGGCAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
63855920 CCATCTGCACCTAGGAT-CTT
65 CCATCGGCACCTAGG-TCCTT
* * * * * * * * *
63855940 GGATGTGCGGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTCTTACGGGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63856005 CCATCGGCACAT-GTGTGCTCG
65 CCATCGGCACCTAG-GTCCT-T
* * ** * *
63856026 GATGTGCGGGAGCCTCAGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGTC-GGAGCCTCGGAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTG-CGGGAGCCTCGGGC
** * *
63856088 ACTGTCGGGAACGTAGG-CTCTT
64 ACCATC-GGCACCTAGGTC-CTT
* * * * * ** ** * *
63856110 GGTCATGCGGGAGCCTTGAGCACCATCGAC-ACCTTCGTGCTTGGAT-GT-CTGGGAACCTCGGA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GGGAGCCTCGGG
* * *
63856172 TACCATCGGTAACCTAGGCCCTT
63 CACCATCGG-CACCTAGGTCCTT
* * * * * * * *
63856195 GGTCGTCCGAGAGCCTCAGGCACCATCGGCAAACTAAGCACTTGGTCGTGAGGGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** * * *
63856260 CCATCGGCAAAATTGGCCCAT
65 CCATCGGC-ACCTAGGTCCTT
* * * ** * ** *
63856281 GGTCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGAGCTTGGAT-GCGCGGGAGCCTTAGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * *
63856344 ACCATCGGCAAACTAGGCCCGT
64 ACCATCGGC-ACCTAGGTCCTT
* * ** * ** **
63856366 GGTCTTGCAAGAGCCTCGGGCACCATC-G-ATACAT-GTGTGCTTGGAT-GTGCGGGAGCCTCAA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCA-ACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGG
* *
63856427 GCACCATCGACACCTCA-GTGCTAT
62 GCACCATCGGCACCT-AGGTCCT-T
* * ** * * *
63856451 GATGTGCCGGAGCCTCGGACACTGTCAGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** *
63856516 CATCGACACCTTCGTGCTT
66 CATCGGCACCTAGGTCCTT
* * * * * * * *
63856535 GGATGTTCGAGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGACA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
63856600 CCATCGGCAAACTAAG-CCTT
65 CCATCGGC-ACCTAGGTCCTT
* * * ** * *
63856620 TAGTCGTGCGGGAGCCTCAGGCACCGTCGGCAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGGC
1 GA-T-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* **
63856685 ACCATCGGTAACCTAGACCCTT
64 ACCATCGG-CACCTAGGTCCTT
* ** * * **
63856707 GGTCGTGCTAGAGCCTCGGGCACCATGGGC-ACCAAGGTGCTTGGAT-GTGCGGGAGCCTCGGGC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* *
63856770 ACCATCGACAAACTAGG-CCTTT
64 ACCATCGGC-ACCTAGGTCC-TT
* * * * * *
63856792 GGTCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
63856857 CCATCGACTCCTTCGTGCTT
65 CCATCGGCACCTAGGTCCTT
* * * * * *
63856877 GGATGTGCGGGAACCTCGGACACCATTGGCAACCTAGGCCCTTAGTCGTGCGAGAGCCTTGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
63856942 CCATCGGTAAACTAAGCCCTT
65 CCATCGG-CACCTAGGTCCTT
* * ** *
63856963 GGTCGTGCAGGAGCCTCGGGCACCATCGGCACAATTA-GCCCTTGGTCGTGCGAGAGCCTCGGTG
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCA-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-G
* * **
63857027 ---C-TTGG-A--T--GTGCGG
63 CACCATCGGCACCTAGGTCCTT
* ** * * * * * * * *
63857040 GA-G-CCACAGACACCATC-GGCA-AACTAGGC--CCTTGGTCTTGTGGGAGCCT-CGGGCA-CC
1 GATGTGC-GGGA-GCC-TCGGGCACCA-TCGGCAACCTAGGCCCT-T-GG-TCGTGCGGG-AGCC
*
63857097 ATC-GGCACC-T--G------GGTGCTT
58 -TCGGGCACCATCGGCACCTAGGTCCTT
* * **
63857115 CGATGTGCGGAAGCCTCGGGCACCATCGGCAACCTTGGCCCTTGGTCGTGCTAGAGCCT-GTGGC
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GGC
*
63857179 ACCATCGGCACCTAGGTGCTT
64 ACCATCGGCACCTAGGTCCTT
* * * * *
63857200 GGATGTACGGGAGCCTCAGACACCATCGGCAAACTAGG-CCTTTGT-GTTGCGGGAGCCTCGGGC
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG-TGCGGGAGCCTCGGGC
* * * *
63857263 ACCAGCGGCACAT-GTGTGCTCG
64 ACCATCGGCACCTAG-GTCCT-T
* * ** * * *** * * *
63857285 GTTGTGCAGGAGCCTCAAGCACCATCGG-TACCTCGATGCTATGAT-GTGCCGGAGCCTCGGACA
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCA
* *
63857348 CTATCGGCAACCTAGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* * * * * ** ** * *
63857369 GGTCATGCGAGAGCCTCGAGCA-CATCGAC-ACCTTCGTGCTTGGAT-GTGCGGGAACCTCGGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
*
63857431 ACCATCGGCAACCTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * * * *
63857453 GGTCGTACGAGAGCCTCGGGCACCATTGGCAAACTAAGCCTTTGGTCGTGCGGGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
63857518 CCGTCGGCAACATTGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* * * ** * * * *** **
63857539 GGTCGTGCGAGAGTCTTAGCCACCATCGAC-ACTTAGGTGGTTGGAT-GTGCGGGAGCCTCGACC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * *
63857602 ACTATTGGCACCTAGGTGCTT
64 ACCATCGGCACCTAGGTCCTT
* * * * * * ** * * *
63857623 GGATGTGTGAGAGCCTCAGACACCACCGGTAAAGTAGACCCTTGGTC-TTCGGGAGCCTCGAGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
63857687 CTATCGGCACCCCGATTCTT
65 CCATCGGCACCTAGGTCCTT
* ** * **
63857707 CGATGTGCGAGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCCTGCTAGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
63857772 CCATCGGCACCAAGGTGCTT
65 CCATCGGCACCTAGGTCCTT
** * * * *
63857792 GGATGTGCGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63857857 CTATCGGCTACCTAGGCCCTA
65 CCATCGGC-ACCTAGGTCCTT
* ** * * * * *
63857878 GGTCGTGCGAAAGCCTCGAGCACCATCGGC-ACAT-GTGCGCTCGGAT-GTCCGGGAGCCTCGGG
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGG
* *
63857940 CACCATCGGTACCTCA-GTGCTAT
63 CACCATCGGCACCT-AGGTCCT-T
* * * * ***
63857963 GATGTGCGGGAGGCTCGGACACTATCAGCAACCTAGGCCCTTGGTCGTGCTAAAGCCTCGGGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
**
63858028 CATCGGCAAAATAGG-CCATT
66 CATCGGC-ACCTAGGTCC-TT
* ** ** ** * * *
63858048 GGTTGTGCTAGAGCCTCGGGCACCATCTAC-ACCTAGGATCTTGGAT-GTGCGGGTGCCTCAGAC
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * * *
63858111 ACCATCGACAAACTAGGCCCGTC
64 ACCATCGGC-ACCTAGGTCC-TT
* * ** * * *
63858134 G-TCTTGCGGGAGCCTCGGGCACCATCGGC-ACAT-GTGTGCTCGGAT-GTGCGAGAGCCTCAGG
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGG
*
63858195 CACCATCGGCACCTCA-GTGCTAT
63 CACCATCGGCACCT-AGGTCCT-T
* * * ** * ** * * *
63858218 GATGTACCGGAGCCTCGGACACTGTCGGGAATGTAGGCTCTTGGTCATGCGGGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** *
63858283 CATCGACACCTTCGTGCTT
66 CATCGGCACCTAGGTCCTT
* * * * * * *
63858302 GGATGTCCGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTCCGAGAGCCTCAGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63858367 CCATCGGTAAACTAAG-CACTT
65 CCATCGG-CACCTAGGTC-CTT
* ** * * *
63858388 GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGCCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
**
63858453 CCATCGGCACCTAGGAGCTT
65 CCATCGGCACCTAGGTCCTT
* * * * * * *
63858473 GGATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCGTGGTCTTGCAGGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** * * *
63858538 CCATCGATACAT-GTGTGCTCG
65 CCATCGGCACCTAG-GTCCT-T
** * * * *
63858559 GATGTGCGGGAGCCTCAAGCACCATCGAC-ACCTCAGTG--CTATGAT-GTGCTGGAGCCTCGGA
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGG
** ** *
63858620 CACTGTCAGTAACCTAGGCCCTT
63 CACCATC-GGCACCTAGGTCCTT
* * * * ** ** * *
63858643 GGTCATGCGGGAGCCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-GTGCGGGAACCTCGGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
*
63858706 ACCATCGGCAACCTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * * * *
63858728 GGTCGTCCGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCGTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** *
63858793 CCATCGGCAAAATTGG-CCTTT
65 CCATCGGC-ACCTAGGTCC-TT
* * * * ** ** * *
63858814 GGTCGTGCGAGAGCGTCGGCCACCATCGGC-ACCTAGGTGCTTGGATC-TGTAGGAGCCACGGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* *
63858877 ACCATCGGCAAACTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * ** **
63858899 -AGTCTTGCGGGAGCCTCAGGCACCATCGGC-ATCAAGGTGCTTGGAT-GTGCGGGAGCCTCGAA
1 GA-T-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* *
63858961 CACCATCGACAAACTAGG-CCTTT
63 CACCATCGGC-ACCTAGGTCC-TT
* * * * * * ** *
63858984 GGTCTTGCGGGAGCCTTGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGCGAAAGCCTTGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
63859049 CCATCGGCA-C-ATGTGCGCTCG
65 CCATCGGCACCTAGGT-C-CT-T
** * * *
63859070 GATGTTTGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-GTGCGGGAGCCTCGGA
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGG
* *
63859131 CACTATCAGCAACCTAGG-CCGTT
63 CACCATCGGC-ACCTAGGTCC-TT
* * *** * ** * * * **
63859154 GGTCGTACCAAAGCCTCGGGCACCATCGGTAAAGTGGGCCATTGGTTGTGCTAGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
63859219 CCATCGGCACCTAGGACCTT
65 CCATCGGCACCTAGGTCCTT
* * * * * * *
63859239 GTATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGGTCCATGGTCTTGCGGGAGCCTCGGGCA
1 G-ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63859304 CCATCGGCA-CTTGTGTGCTCG
65 CCATCGGCACCTAG-GTCCT-T
* ** * * ** * *
63859325 GATGTGTGGGAGCCTCAAGCACCATCGAC-ACCTCGGTGCTATGAT-GTGTC-GGAGCCTCGGAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTG-CGGGAGCCTCGGGC
*
63859387 ACTATCGGCAACCTAGG-CGCTT
64 ACCATCGGC-ACCTAGGTC-CTT
* * * * * ** ** * * *
63859409 GGTCATGCGGGAGCCTCGAGCACCATCGAC-TCCTTCGTGCTTGGAT-GTCCGGGAACCTCGGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* *
63859472 ACCATCGGAAACCTAGGCCCTT
64 ACCATCGG-CACCTAGGTCCTT
* * * * ** * * *
63859494 GGTAGTACGAGAGCCTTGGGCACCATCGATAAACTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** * *
63859559 CCATCGGCAAAATTGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* * * * ** * * * *
63859580 GGTCGTGCGAGAGCCTCGGCCACCATCGTC-ACCTAGGTGCTTGGAT-GTACGGGAGCCACAGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* *
63859643 GCCATCGGCAAACTAGG-CCATT
64 ACCATCGGC-ACCTAGGTCC-TT
* * * ** * *
63859665 GGTCTTGTGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTCGAT-GTGCGGGAGCCTCGGGA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGC
* * *
63859728 ACCGTCGGCAATCTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* ** * ** * * *
63859750 GGTCGTGCTAGAGCCT-GTGGCACCATCGG-TACCTAGGTGCTTGGAT-GTACGGGAGCCTCAGA
1 GAT-GTGCGGGAGCCTCG-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
*
63859812 CACCATCGGCAAACTAGG-CCTTT
63 CACCATCGGC-ACCTAGGTCC-TT
* * * * ** * * * **
63859835 GGTCTTGCGGGAGCCTCGGGCACCATCGAC-ACAT-GCGTGCTCGGTTGTGCAGGAGCCTCAAGC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGGTCGTGCGGGAGCCTCGGGC
* * *
63859898 ACCATCGGTACCTCGGTGCTAT
64 ACCATCGGCACCTAGGTCCT-T
** * ** * *
63859920 GATGTGCCTGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** *
63859985 CATCGACACCTTCGTGCTT
66 CATCGGCACCTAGGTCCTT
* * * * *
63860004 GGATGTGCGGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTAGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
63860069 CCATCGGCAAACT-GAG-CCTTT
65 CCATCGGC-ACCTAG-GTCC-TT
* * * * * * * * * *
63860090 GGTCATGCAGGAGCCTCGAGCACCATCGGCAACATTGGCCCTTGGTCGTGCGAGAGCATCAGCCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* **
63860155 CCATCGACACCTAGGTGGTT
65 CCATCGGCACCTAGGTCCTT
* * * * * *** * *
63860175 GGATGTGCGGGAGCCTCGGCCACTAT-TGCCACCTAAGTGTTTGGATC-TGCGAGAGCCTCGGAC
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* ** *
63860238 ACCACCGGCAAAGTA-GACCATT
64 ACCATCGGC-ACCTAGGTCC-TT
* * * * * ** * * *
63860260 GGTCTTGCGGGAGCCTCGAGCACCATCGGTACCCT-GGTTCTTCGAT-GTGCGTGAGCCTCAGGC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGC
* *
63860323 ACCATCGGCACCAAGGTGCTT
64 ACCATCGGCACCTAGGTCCTT
* ** * * * *
63860344 GGATGTACGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63860409 CTATCGGCA-C-ATGTGCGCTCG
65 CCATCGGCACCTAGGT-C-CT-T
* * * * * *
63860430 GATGTCCGGGAGCCTCGGGCACCATTGG-TACCTCAGTG--CTATGAT-GTCCGGGAGCCTCGGA
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGG
* * * *
63860491 CACTATCAGCAACCTGGGCCCTT
63 CACCATCGGC-ACCTAGGTCCTT
* ** ** * * **
63860514 GGTCGTGCGAAAGCCTCGGGCACCATCGGCAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
**
63860579 CCATCGGCACCTAGGAGCTT
65 CCATCGGCACCTAGGTCCTT
* * * * * * * * * *
63860599 GGATGCGCGGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTCTTGCGGGAGCCTCAGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63860664 CCATCGGCACAT-GTGTGCTCA
65 CCATCGGCACCTAG-GTCCT-T
* * * ** * * *
63860685 GATGTGCGAGAGCCTCAGGCACCATCGGC-ACCTTGGTGCTATGAT-GTGTC-GAAGCCTCGGAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTG-CGGGAGCCTCGGGC
** * *
63860747 ACTGTCGGCAACGTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * ** ** * * *
63860769 GGTCATGCGGGAGCCTCGAGCACCATCGAC-ACCTTCGTTCTTGGAT-GTCCGGGAACCTCGGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* *
63860832 ACCATCGGTAACCTAGGCCCTT
64 ACCATCGG-CACCTAGGTCCTT
* * * * * *
63860854 GGTCGTGCGAGAGCCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGTGGGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** * *
63860919 CCATCGGCAAAATAAGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
** * * ** ** * *
63860940 GGCCGTGTGAGAGCCTC-GGCTACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCGACAGA
1 -GATGTGCGGGAGCCTCGGGC-ACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * *
63861002 CACCATCGACAAACTAGGCCCTT
63 CACCATCGGC-ACCTAGGTCCTT
* * * ** *
63861025 GGTCTTGCAGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTCGAT-GTGCGGGAGCCTCGGGC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGC
*
63861088 ACCATCGGCAACCTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* *** * * ** * * *
63861110 GATCGTTCTAAAGCCTGGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTACGGGAGCCTCAGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
63861173 ACCATCGGCACACTAGG-CCTTT
64 ACCATCGGCAC-CTAGGTCC-TT
* * * **
63861195 GGTCTTGCGGGAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
63861260 CCATCGGCA-C-ATGTGCGCTCA
65 CCATCGGCACCTAGGT-C-CT-T
* ** * * * * **
63861281 GATGTCCGGGAGCCTCGTACACTATCGGCAACCTAGGCCATTGGTCGTACCGGAGCCTCAAGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * *
63861346 CATCGACAACCTTGGCCCTT
66 CATCGGC-ACCTAGGTCCTT
* * ** * *
63861366 GGTCGTGCGAGAGCCTTAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
63861431 CTATCGACAAGATAGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* * * * ** **
63861452 GGTCGTGCGAGAGCCTTGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGAAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * *
63861515 ACCATCGGGAAACTAGG-CTCTC
64 ACCATC-GGCACCTAGGTC-CTT
* * * * ** * * *
63861537 GGTCTTGCGGGAGCCTCGGGCACCATAGGC-ACCTCGGTGCTTCGAT-GTGCTGGAGCCTTGGGC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGC
*
63861600 ACCATCGGCACCTAGGTGCTTT
64 ACCATCGGCACCTAGGT-CCTT
* * * * *
63861622 GATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * *
63861687 TATTGGCTACCTAGGCCCTT
66 CATCGGC-ACCTAGGTCCTT
* ** * * ** * * **
63861707 GGTCGTGCGAAAGCCTCGGGCACCATTGGC-ACAT-GTGCTATCGGAT-GTCCAAGAGCCTCGGG
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGG
* * *
63861769 -ATCTATCGGCACCTCGGTGCTAT
63 CA-CCATCGGCACCTAGGTCCT-T
* * * * * *
63861792 AATGTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGCCGTGCCGGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * *
63861857 CATCGACAACCTTGGCCCTTT
66 CATCGGC-ACCTAGGTCC-TT
* * * * *
63861878 G-TCGTGCGAGAGCCTCGGGCACCAAT-GGCAAACTAAGCCCTTGGTCGTACGGAAGCCTCGGGC
1 GAT-GTGCGGGAGCCTCGGGCACC-ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * ** *
63861941 ACTATCGACAAAATAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * ** *
63861963 GGTCGTGCGAGAGCCTTGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA-CCGTTC-A
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCC--TCGG
* * * *
63862024 ACACCATCGACAACCTTGGCCCTT
62 GCACCATCGGC-ACCTAGGTCCTT
* ** * * * *
63862048 GGTCGTGCGGGAGCCTCGAACACCATTGGCAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGGGCT
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** *
63862113 CCATCGGCAAAATAGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* * * * ** ** * *
63862134 GGTCGTGAGAGAGCCTCGGCCACCATAAGC-ACCTAGGTGCTTAGAT-GTGCGGGAGCCTCGGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGC
* *
63862197 ACCATCGGCAAACTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * * * ** **
63862219 GGTCCTACAGGAGCCTTGGGCACCATTGGCAAAATAGGCCCTTGGTCGTGCAAGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* **
63862284 CCATCGGTACCTAGGAGCTT
65 CCATCGGCACCTAGGTCCTT
* ** * * * ** * *
63862304 GGATGTGCGGGAGCCTCAGAAACCATCGGTAAACTAGGCCCGTGGTATTGCGGGAGCCTCAGACA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63862369 CCATCGGTA-C-ATGTGCGCTCA
65 CCATCGGCACCTAGGT-C-CT-T
* * * * ** * * *
63862390 GATGT-CTGGGAACCTCAGCCACCATCGGC-ACCTCGGTGCTGTGAT-GTGCGGCAGCCTCGGAC
1 GATGTGC-GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGC
** * *
63862452 ACTGTCGACAACCTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * ** ** * *
63862474 -AGTCGTGCGGGAACCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-GTGCGGGAACCTCGGA
1 GA-T-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* *
63862536 CACCATCGGCAACCGAGGCCCTT
63 CACCATCGGC-ACCTAGGTCCTT
* * * * * * * *
63862559 GGTCATGCGAGAGCCTCGGGCACCTTCGGTAAACTAAGCCCTTGGTCCTGCGGGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * *
63862624 TCATCGCCAAAATTGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* * * ** * ** * *
63862645 GGTCGTGCAGGAGCCTTGACCACCATCGAC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCAGTC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
*
63862708 ACCATCGGCAAACTAGG-CCATT
64 ACCATCGGC-ACCTAGGTCC-TT
* * *
63862730 GGTCTTGCGGGAGCCTC-GGCACCATCGGC-ACCTCAGTG--CTTCGAT-GTGCGGGAGCCTCGG
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCTT-GGTCGTGCGGGAGCCTCGG
*
63862790 GCACCATCGGCAACCTAGGCCCTT
62 GCACCATCGGC-ACCTAGGTCCTT
* ** * * ** *
63862814 GGTCGTGCTAGACCCTCGGGCACCATCGGC-ACTTAGGTGCTTGGAT-GTGCGGGAGCCTCGGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* *
63862877 ACTATCGGCAAACTAGG-CCTTT
64 ACCATCGGC-ACCTAGGTCC-TT
* * * ** *
63862899 GGTCTTGCGGGAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGCGAAAGCCTCAGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** * * *
63862964 CCATTAGCACAT-GTTCGCTCG
65 CCATCGGCACCTAGGTC-CT-T
* * * *** * * * *
63862985 GATGTTCGGGAGCCTCGGGCACCATCAGC-ACCTCGGTGTTATGAT-GTGCGAGAGCCTCAGACA
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCA
* *
63863048 CTATCGGCAACCTAGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* ** * * * *
63863069 GGTCGTGCCAGAGCCTCGAGCACCATCGACAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63863134 CCATCGGCAAACTAAGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* ** * * ** * * * *
63863155 GGTCGTGCAAGAGCCTCAGGCACCATCGGTAAAATAGGCCATTGGTTGTGCGAGAGCCTCGGCCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
63863220 CCATCGGCACCTAGGTGCTT
65 CCATCGGCACCTAGGTCCTT
* ** * ***
63863240 GGATGTGCGGGACCCTCGAACACCATCAGCAACCTTA-GCCCTTGGTCGTGCGGGAGCCTCGAAA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * *
63863304 ACCATTGGCAACCTTGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * * ** *
63863326 GGTCGTGCGAGAGCCTCGGGCTCCATCGGTAAAATAGGCCCTTGGTCGTGCGAGA-CCTC-GGCT
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC-
** *
63863389 ACCATCGGCATTTAGGTGCTT
64 ACCATCGGCACCTAGGTCCTT
* * * * * * *
63863410 GGATGTGTGGGAGCCTCGGACACCATCGGCAAACTGGGCCCTTGGAT-GTGCAGGAGCCTCAGAC
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* *
63863474 ACCATCGGCAAACTAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * ** * * *
63863496 GGTCGTGCGGGAGCCTCAGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCAGAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGC
** ** *
63863559 ACTGTCGATAACCTAGGCCCTT
64 ACCATCG-GCACCTAGGTCCTT
* * * * * ** * *
63863581 GGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACATTGGTGCTTGGAT-GTGCGGGAACCTCGTGC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* *
63863644 ACCATCGGTAACCTAGGCCCTT
64 ACCATCGG-CACCTAGGTCCTT
* * * * * * * * * * * * *
63863666 GGTCGTACGTGAGCGTTGGGCACCAACGACAAACTAAGCCCTTGGCCGTACGAGAGCCTCGGCCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
63863731 CCATCGGCACCTAGGTGCTT
65 CCATCGGCACCTAGGTCCTT
* * * * * *
63863751 GGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCTTACAGGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
63863816 CCATCGGCACCTCGGTGCTTT
65 CCATCGGCACCTAGGT-CCTT
* **
63863837 GATGTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCTAGAGCCTCGGGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
*
63863902 CATCGGCACCTAGGTGCTT
66 CATCGGCACCTAGGTCCTT
* * * * * *
63863921 GGATGTGCGGGTGCCTCGGACACCATCGGCAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGAGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
63863986 CCATCGGCTACCTAGGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
* ** ** ** * * *
63864007 GGTCGTATGAAAGCCTCAAGCACCATCGGC-A--TATGTGCGCTCGGAT-GTTCGGGAGCCTCGG
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-G-GCCCTTGG-TCGTGCGGGAGCCTCGG
* *
63864068 GCACCATCGGCACCTCGGTGCTAT
62 GCACCATCGGCACCTAGGTCCT-T
* * * ** *
63864092 GATGTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTTGTGCCAGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * *
63864157 CATCGACAACCTTGGCCCTT
66 CATCGGC-ACCTAGGTCCTT
* * * * * * *
63864177 GGTCGTGTGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTAGTCGTGCGGAAGCCTCGGGCA
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* **
63864242 CCATTGGCAAAATAGG-CCTTT
65 CCATCGGC-ACCTAGGTCC-TT
* *** * ** * * **
63864263 GGTCGTGCAAAAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTACGGGACCCTCGAAC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * *
63864326 ACCATCGGTAACCTTGGCCCTT
64 ACCATCGG-CACCTAGGTCCTT
* ** * *
63864348 GGTCGTGCGGGAGCCTCGAACACCATTGGCAACCTTA-GCCCTTGGTCGTGCGAGAGCCTCGGGC
1 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * ** *
63864412 TCCATCGACAAAATAGGCCCTT
64 ACCATCGGC-ACCTAGGTCCTT
* * * ** * *
63864434 GGTCGTGTGAGA-CCTC-GGCTACCATCGGC-ACCTAGGTGCTTAGAT-GTGCGGGAGCCTCGGA
1 GAT-GTGCGGGAGCCTCGGGC-ACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGG
* * *
63864495 CACCATCGGCAAACTGGGCCCTT
63 CACCATCGGC-ACCTAGGTCCTT
** * * * *
63864518 GGATGTGTAGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
63864583 CCATCGGCACCTCGGTGCTAT
65 CCATCGGCACCTAGGTCCT-T
* * ** ** *
63864604 GATGTGCGGGAGCCTCAGACACTGTCGATAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * * *
63864669 CATCGACACCTTGATGCTT
66 CATCGGCACCTAGGTCCTT
* * * * * *
63864688 GGATGTGCGGGAACCTCGTGCACCATCGGCAACCTAGGCCCTTGGTCATACGAGAGCCTTGGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
63864753 CCATCGGCAAACTATGCCCTT
65 CCATCGGC-ACCTAGGTCCTT
** * * * ** *
63864774 GGCCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAAGTGCTTGGAT-GTACGGGAGCCTCGGGC
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * * *
63864837 ACCATCGGCACCTTGCTGGCTCA
64 ACCATCGGCACCTAGGT-CCT-T
* * * ** * *
63864860 GATGTGCGGGAGCCTCGGGCAGCATCAG-AACCTCGGTGGCTAGGAT-GTGCGGGAGCCTCGGAC
1 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGC
* * *
63864923 ACCATCGTCAACCTTGGTGCTT
64 ACCATCGGC-ACCTAGGTCCTT
* *
63864945 AGATGTACGGGACCCTCGGGCACCATCGGCA
1 -GATGTGCGGGAGCCTCGGGCACCATCGGCA
63864976 CCTTGGTGCT
Statistics
Matches: 8450, Mismatches: 2229, Indels: 960
0.73 0.19 0.08
Matches are distributed among these distances:
73 1 0.00
74 4 0.00
75 16 0.00
76 43 0.01
77 15 0.00
78 11 0.00
79 2 0.00
81 1 0.00
82 2 0.00
83 35 0.00
84 1166 0.14
85 5088 0.60
86 2023 0.24
87 40 0.00
88 3 0.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (84 bp):
GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
CATCGGCACCTAGGTCCTT
Found at i:63854151 original size:212 final size:212
Alignment explanation
Indices: 63853783--63854179 Score: 514
Period size: 212 Copynumber: 1.9 Consensus size: 212
63853773 GGTCTTGTGG
** * *
63853783 GAGCCTCGGGCACCATCGGCACCTAGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGGCAAC
1 GAGCCTCAAGCACCATCGGCACCTAGATGCTTCGATGTGCGGGAGCCTCGGACACCATCGGCAAC
* * * * *
63853848 CTAGGCCCATGGTCGTGCTAGAGCCTGTGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAG
66 CTAGGCCCATGGTCATGCTAGAGCCTGTAGCACCATCGACACCTACGTGCTTGGATGTACGGGAA
* * *
63853913 CCTCAGACACCATCGGCAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCAGCGGAACATG
131 CCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAGCGGAACATG
63853978 TATGATCGGTTGTGCAA
196 TATGATCGGTTGTGCAA
* * * *
63853995 GAGCCTCAAGCACCATCGGTACCTCGATGCTAT-GATGTGTC-GGAGCCTCGGACACTATTGGCA
1 GAGCCTCAAGCACCATCGGCACCTAGATGCT-TCGATGTG-CGGGAGCCTCGGACACCATCGGCA
* * *
63854058 ACCTAGGCCCTTGGTCATGC-AGGAGCCTCG-AGCACCATCGACACCTTCGTGCTTGGATGTGCG
64 ACCTAGGCCCATGGTCATGCTA-GAGCCT-GTAGCACCATCGACACCTACGTGCTTGGATGTACG
* * * * *
63854121 GGAACCTCGGACACGATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGTCACCA
127 GGAACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
63854180 TCGGCAAACT
Statistics
Matches: 157, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
211 1 0.01
212 153 0.97
213 3 0.02
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (212 bp):
GAGCCTCAAGCACCATCGGCACCTAGATGCTTCGATGTGCGGGAGCCTCGGACACCATCGGCAAC
CTAGGCCCATGGTCATGCTAGAGCCTGTAGCACCATCGACACCTACGTGCTTGGATGTACGGGAA
CCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAGCGGAACATG
TATGATCGGTTGTGCAA
Found at i:63854587 original size:383 final size:382
Alignment explanation
Indices: 63853723--63862753 Score: 1282
Period size: 383 Copynumber: 23.6 Consensus size: 382
63853713 CGAGAGCCTC
* * *
63853723 GGTGCTTGGATGTGCGGGAGCCAC-AGACACTATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGC
* * * * *
63853787 CTCGGGCACCATCGGCACCTAGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTA
65 CTCGGGCACCATCGGCACCTAGG-CCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACATA
* * *
63853851 GGCCCATGGTCGTGCTAGAGCCTGTGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCCT
129 GGCCCATGGTCGTGCGAGAGCCTGTAGCACCATCGACACCTAGGTGCTTGGATGTACGGGAGCCT
* * * *
63853916 CAGACACCATCGGCAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCAGCGGAACATGTAT
194 CAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGGAACATGTAT
*
63853981 GATCGGTTGTGCAAGAGCCTCAAGCACCATCGGTACCTCGATGCTATGATGTGTCGGAGCCTCGG
259 GATCGGTTGTGCAAGAGCCTCAAGCACCATCGGCACCTCGATGCTATGATGTGTCGGAGCCTCGG
* * **
63854046 ACACTATTGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACCTT
324 ACACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACCAA
* * * * * * * *
63854105 CGTGCTTGGATGTGCGGGAACCTCGGACACGATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCC
* * * * * * *
63854170 TCGGTCACCATCGGCAAACTAAGCCTTTGGTCGTGCGGGAGCGTCGGACACCGTCGGCAACATTG
66 TCGGGCACCATCGGC-ACCTAGGCCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACATAG
* * * *
63854235 GCCCTTGGTCGTGCGAGAGCCT-TAGCAACCATCGACACTTAGGTGGTTGGATGTGCGGGAGCCT
130 GCCCATGGTCGTGCGAGAGCCTGTAGC-ACCATCGACACCTAGGTGCTTGGATGTACGGGAGCCT
** * * * * * *
63854299 TGGCCACTATTGGC-ACCTAGGTGC-TTGGAT-GTGTGAGAGCCTCGGACACCACCGGTAA-A-G
194 CAGACACCATCGGCAAACTAGG-CCTTTGG-TCGTGCGAGAGCCTCGGACACCACCGG-AACATG
** * * *
63854359 TA-GACCCTCGGTCT-TGCGGGAGCGTCGAGCACCATCGGCACC-CTGATTCT-TCGATGTG-CG
256 TATGA---TCGGT-TGTGCAAGAGCCTCAAGCACCATCGGCACCTC-GATGCTAT-GATGTGTCG
* * * * *
63854419 AGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCTA-GAGCCTCGGGCACCATCGGC
315 -GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGC-AGGAGCCTCGAGCACCATCGAC
63854483 ACCAA
378 ACCAA
* *
63854488 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGGTCTTGCGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCC
* * ** *
63854553 TCGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGCGAAAGCCTCGGGCACCATCGGC-ACAT-G
66 TCGGGCACCATCGGC-ACCTAGGCCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACATAG
* * * * * ** * *
63854616 TGCGCTCA-GAT-GTCCGGGAGCCTCG-GGCACAATCGGTACCTCA-GTACTAT-GATGTGCGGG
130 -GC-C-CATGGTCGTGCGAGAGCCT-GTAGCACCATCGACACCT-AGGTGCT-TGGATGTACGGG
* * * * * * * * *
63854676 AGCCTCGGACACTATCAGCAACCTACGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGCAA-
189 AGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGG-AAC
* * * * ** * *
63854740 A-ATAAGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCACCTAGGA-CCT-TGGATGTG-C
253 ATGTATG--ATCGGTTGTGCAAGAGCCTCAAGCACCATCGGCACCT-CGATGCTAT-GATGTGTC
* * * * ** * *
63854801 GGGTGCCTCAGACACCAT-GGACAAACTAGGCCCGTCATCTTGCAGGAGCCTCGGGCACCATC-A
314 -GGAGCCTCGGACACCATCGG-CAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGA
*
63854864 GCA-CAT
377 -CACCAA
* * * * ** * * *
63854870 GTGTGCTCGGATGTGCGGGAGCCTC-AGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCCGGA
1 G-GTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGGCAAACTAGGCCCT-TGGTCTTGCGGGA
* * ** * * * ** *
63854932 GCCTCCGACACTGTCGGCAACGTAGGCTCTT-GGTCATCCGGGAGCCTC-GAGCACCATCAACAC
63 GCCTCGGGCACCATCGGC-ACCTAGGC-CTTAGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAA
* * * * * * * * ** *
63854995 CTTCGTG--CTTGGAT-GTCCGGGAACCTCG-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
125 CATAG-GCCCATGG-TCGTGCGAGAGCCT-GTAGCACCATCGAC-ACCTAGGTGCTTGGAT-GTA
** ** * * * * * * * *
63855055 CTAGAGCCTGTGGCACCATCGG-TACCTAGGTGC-TTGGAT-GTACGGGAGCCTCAGACACCATC
185 CGGGAGCCTCAGACACCATCGGCAAACTAGG-CCTTTGG-TCGTGCGAGAGCCTCGGACACCACC
* * * * ** ** * * ** *
63855117 GGCAA-A-CTAGGCCTTTGGTCT-TGCGGGAGCCTCGGGCACCATCGGCACAT-GTGTGCTCGGT
248 GG-AACATGTATG--ATCGGT-TGTGCAAGAGCCTCAAGCACCATCGGCACCTCG-ATGCTATGA
* * * ** * * *
63855178 TGTG-CAGGAGCCTC-AAGCACCATCGG-TACCTCGGTGCTATGAT-GTGCCGGAGCCTCG-GAC
308 TGTGTC-GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCT-TGGTCATGCAGGAGCCTCGAG-C
* * *
63855238 ACTATCGGCAACCTA
369 ACCATCGAC-ACCAA
** * * * * ** ** * *
63855253 GGCCCTTGG-TCATGCGGGAGCCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-GTGCGGGAA
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGG-TCTTGCGGGAG
* * * * * *
63855315 CCTCAGACACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTTGGGCACCATCGGTAA-A
64 CCTCGGGCACCATCGGC-ACCTAGG-CCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACA
* ** * * * * * * ** * *
63855378 CTAAGCCTTTGGTCGTGCGGGAGCCTCG-GGCACCGTCGGCAACATTGGCCCTTGG-TCGTGCGA
127 -TAGGCCCATGGTCGTGCGAGAGCCT-GTAGCACCATCGAC-ACCTAGGTGCTTGGAT-GTACGG
* * * * * * * * * **
63855441 GAGCCTTAGCCACCAT-TG-ACACTTAGGTGC-TTGGAT-GTACGGGAGCCTCGGCCACTATTGG
188 GAGCCTCAGACACCATCGGCAAAC-TAGG-CCTTTGG-TCGTGCGAGAGCCTCGGACACCACCGG
* * * * * * ** * * ** * ** * *
63855502 CACCTAG-GTGCTTGGATGTGTGAGAGCCTC-GGACACCACCGGCAAAGTAGACCCT-TGGTCT-
250 AACAT-GTATGATCGGTTGTGCAAGAGCCTCAAG-CACCATCGGC-ACCTCGATGCTATGATGTG
* *** * * *
63855563 TGCGGGAGCCTC-GAGCACCATCGGCACCCT-GATTCTTCGAT-GTGC-GAGAGCCTCGGGCACC
312 T-C-GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTT-GGTCATGCAG-GAGCCTCGAGCACC
* *
63855624 ATCGGCGACCTA
372 ATCGAC-ACCAA
** ** ** * * *** *
63855636 GGCCCTTGG-TCGTGCTAGAGCCTCGGGCACCATCGGC-ACCAAGTTACTTGGAT-GTGCGGGAG
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGG-TCTTGCGGGAG
** ** * ** ** *
63855698 CCTCGGGCACTGTCAACTACCTAGGCCCTAGGTCGTGCGAAAGCCTC-GAGCACCAT-TACCACA
64 CCTCGGGCACCATCGGC-ACCTAGGCCTTAGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACA
* * * * ** *
63855761 T-GTGCGC-TCGGAT-GTCCGGGAGCCTCG-GGCACCATCGGTACCTCA-GTGCTAT-GATGTGC
127 TAG-GCCCAT-GG-TCGTGCGAGAGCCT-GTAGCACCATCGACACCT-AGGTGCT-TGGATGTAC
* * * * * * * * * *
63855820 GGGAGGCTCGGACACTATCAGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTTGGGCACCATCGGC
186 GGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGG-
* * * * ** * *
63855885 AA-A-ATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCTGCACCTAGGAT-CT-TGGATGT
250 AACATGTATG--ATCGGTTGTGCAAGAGCCTCAAGCACCATCGGCACCT-CGATGCTAT-GATGT
* * * * * * * * * *
63855946 G-CGGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTCTTACGGGAGCCTCGGGCACCATC
311 GTC-GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATC
* *
63856010 GGCA-CAT
375 GACACCAA
* * * * ** * *
63856017 GTGTGCTCGGATGTGCGGGAGCCTC-AGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGTC-GG
1 G-GTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGGCAAACTAGGCCCT-TGGTCTTG-CGGG
* ** * * * * *
63856078 AGCCTCGGACACTGTCGGGAACGTAGGCTCTT-GGTCATGCGGGAGCCT-TGAGCACCATCGACA
62 AGCCTCGGGCACCATC-GGCACCTAGGC-CTTAGGTCGTGCGGGAGCCTCGGA-CACCATCGGCA
* * * * * * * * **
63856141 CCTTCGTG--CTTGGAT-GT-CTGGGAACCTCGGA-TACCATCGGTA-ACCTAGGCCCTTGG-TC
124 ACATAG-GCCCATGG-TCGTGC-GAGAGCCT-GTAGCACCATC-G-ACACCTAGGTGCTTGGAT-
* * * * * * *
63856199 GTCCGAGAGCCTCAGGCACCATCGGCAAACTAAGCAC-TTGGTCGTGAGGGAGCCTCGGGCACCA
182 GTACGGGAGCCTCAGACACCATCGGCAAACTAGGC-CTTTGGTCGTGCGAGAGCCTCGGACACCA
* * **** * * * *
63856263 TCGGCAAAATTGGCCCAT-GGTCGTGCGAGAGCCTC-GGCCACCATCGGCACCTAGGA-GCT-TG
246 CCGG-AACA-TGTATGATCGGTTGTGCAAGAGCCTCAAG-CACCATCGGCACCT-CGATGCTAT-
* ** * * * * *
63856324 GATGCG-CGGGAGCCTTAGACACCATCGGCAAACTAGGCCCGTGGTCTTGCAAGAGCCTCGGGCA
306 GATGTGTC-GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCA
* *
63856388 CCATCGATA-CAT
370 CCATCGACACCAA
* * * * *
63856400 GTGTGCTTGGATGTGCGGGAGCCTC-AAGCACCATCGAC-ACCTCAGTG--CTATGAT-GTGCCG
1 G-GTGCTTGGATGTGCGGGAGCCTCGAA-CACCATCGGCAAACT-AG-GCCCT-TGGTCTTGCGG
* ** * * *
63856460 GAGCCTCGGACACTGTCAGCAACCTAGGCCCTT-GGTCATGCGGGAGCCTC-GAGCACCATCGAC
61 GAGCCTCGGGCACCATCGGC-ACCTAGG-CCTTAGGTCGTGCGGGAGCCTCGGA-CACCATCGGC
* * * * * * * **
63856523 ACCTTCGTG--CTTGGAT-GTTCGAGAACCTCGGA-CACCATCGGTA-ACCTAGGCCCTTGG-TC
123 AACATAG-GCCCATGG-TCGTGCGAGAGCCT-GTAGCACCATC-G-ACACCTAGGTGCTTGGAT-
** * * * * * *
63856582 GTGTGAGAGCCTCGGACACCATCGGCAAACTAAGCCTTTAGTCGTGCGGGAGCCTCAGG-CACCG
182 GTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTC-GGACACCA
* * * * * * * ** * * **
63856646 TCGGCAAAAT-T-GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGACCCT-TG
246 CCGG-AACATGTATG--ATCGGTTGTGCAAGAGCCTCAAGCACCATCGG-CACCTCGATGCTATG
* * * * * ** * * *
63856708 GTCGTG-CTAGAGCCTCGGGCACCATGGGC-ACCAAGGTGCTTGGAT-GTGCGGGAGCCTCGGGC
307 AT-GTGTC-GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCATGCAGGAGCCTCGAGC
* *
63856770 ACCATCGACAAACTA
369 ACCATCGAC-ACCAA
* * ** * * * *
63856785 GG-CCTTTGG-TCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTTGGTCATGCGGGAG
1 GGTGC-TTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAG
* * * * * *
63856848 CCTCGAGCACCATCGACTCCTTCGTG-CTT-GGAT-GTGCGGGAACCTCGGACACCATTGGCAAC
64 CCTCGGGCACCATCGGCACC-TAG-GCCTTAGG-TCGTGCGGGAGCCTCGGACACCATCGGCAAC
* * * * * * ** * *
63856910 CTAGGCCCTTAGTCGTGCGAGAGCCT-TGGGCACCATCGGTA-AACTAAGCCCTTGG-TCGTGCA
126 ATAGGCCCATGGTCGTGCGAGAGCCTGT-AGCACCATC-G-ACACCTAGGTGCTTGGAT-GTACG
* * * *
63856972 GGAGCCTCGGGCACCATCGGCACAATTA-GCCCTTGGTCGTGCGAGAGCCT----------CGG-
187 GGAGCCTCAGACACCATCGGCA-AACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGGA
* * ** * * * *** * *
63857025 ---TG-CT--T-GGATGTGCGGGAGCCAC-AGACACCATCGGCAAACTAGGCCCT-TGGTCTTGT
251 ACATGTATGATCGGTTGTGCAAGAGCCTCAAG-CACCATCGGC-ACCTCGATGCTATGAT-GTGT
* * * ** * * *
63857081 GGGAGCCTCGGGCACCATCGGC-ACCTGGGTGCTTCGAT-GTGC-GGAAGCCTCGGGCACCATCG
313 CGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT-GGTCATGCAGG-AGCCTCGAGCACCATCG
* **
63857143 GCAACCTT
376 AC-ACCAA
** ** ** * ** * *
63857151 GGCCCTTGG-TCGTGCTAGAGCCT-GTGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTACGGGA
1 GGTGCTTGGAT-GTGCGGGAGCCTCG-AACACCATCGGCAAACTAGGCCCTTGG-TCTTGCGGGA
* * * * * *
63857212 GCCTCAGACACCATCGGCAAACTAGGCCTT-TGT-GTTGCGGGAGCCTCGGGCACCAGCGGC-AC
63 GCCTCGGGCACCATCGGC-ACCTAGGCCTTAGGTCG-TGCGGGAGCCTCGGACACCATCGGCAAC
** * ** ** * * * *
63857274 AT-GTGTGC-TCGGTTGTGC-AGGAGCCTCAAGCACCATCGGTACCTCGATGCTAT-GATGTGCC
126 ATAG-GCCCAT-GGTCGTGCGA-GAGCCTGTAGCACCATCGACACCTAGGTGCT-TGGATGTACG
* * * * * *
63857335 GGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTC-GAGCA-CATC-GA
187 GGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGA-CACCACCGGA
* * * * * ** * * * ***
63857397 CACCT-TCGTGCTTGGATGTGCGGGAACCTC-GGACACCATCGGCAACCTAGGCCCT-TG--GTC
251 -ACATGT-ATGATCGGTTGTGCAAGAGCCTCAAG-CACCATCGGC-ACCTCGATGCTATGATGT-
* * * * * * * * *
63857457 GTACGAGAGCCTCGGGCACCATTGGCAAACTAAGCCTTTGGTCGTGCGGGAGCCTCGGGCACCGT
311 GT-CG-GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCAT
* * *
63857522 CGGCAACATT
374 CGACACCA-A
** * * * * * *** *
63857532 GGCCCTTGG-TCGTGCGAGAGTCT-TAGCCACCATC-G-ACACTTAGGTGGTTGGAT-GTGCGGG
1 GGTGCTTGGAT-GTGCGGGAGCCTCGA-ACACCATCGGCAAAC-TAGGCCCTTGG-TCTTGCGGG
** * * * * * * * *
63857592 AGCCTCGACCACTATTGGCACCTAGGTGCTT-GGAT-GTGTGAGAGCCTCAGACACCACCGGTAA
62 AGCCTCGGGCACCATCGGCACCTAGG-CCTTAGG-TCGTGCGGGAGCCTCGGACACCATCGGCAA
* * * * * * ** * * * * *
63857655 -AGTAGACCCTTGGTC-TTCGGGAGCCTCG-AGCACTATCGGCACCCCGATTCTTCGATGTGCGA
125 CA-TAGGCCCATGGTCGTGCGAGAGCCT-GTAGCACCATCGACACCTAGGTGCTTGGATGTACGG
* * * * * * * * *
63857717 GAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCCTGCTAGAGCCTCGGGCACCATCGGCAC
188 GAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGG-AA
* * * * * ** * * * * * *
63857782 CAAG-GTGCTTGGATGTGCGGGAGCCTCGAA-CACCATCGACAAACT--AGGCCTTTGGTCT-TG
252 CATGTATGATCGGTTGTGCAAGAGCCTC-AAGCACCATCGGC-ACCTCGATG-CTATGATGTGT-
* * * * * *
63857842 CGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGC-GAAAGCCTCGAGCACCATCG
313 C-GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAG-GAGCCTCGAGCACCATCG
* *
63857906 GCA-CAT
376 ACACCAA
* * * ** * * * *
63857912 GTGCGCTCGGATGTCCGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-GTGCGGG
1 G-GTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACT-AG-GCCCT-TGGTCTTGCGGG
* * * * *** *
63857973 AGGCTCGGACACTATCAGCAACCTAGGCCCTT-GGTCGTGCTAAAGCCTCGGGCACCATCGGCAA
62 AGCCTCGGGCACCATCGGC-ACCTAGG-CCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
* * * * * *
63858037 AATAGG-CCATTGGTTGTGCTAGAGCCTCG-GGCACCATCTACACCTAGGAT-CTTGGATGTGCG
125 CATAGGCCCA-TGGTCGTGCGAGAGCCT-GTAGCACCATCGACACCTAGG-TGCTTGGATGTACG
* * ** * * * * * *
63858099 GGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTCTTGCGGGAGCCTCGGGCACCATCGGCA
187 GGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGGAA
* * * * * **
63858164 CATGTGTGCTCGGATGTGCGAGAGCCTCAGGCACCATCGGCACCTC-AGTGCTATGATGTACCGG
252 CATGTATGATCGGTTGTGCAAGAGCCTCAAGCACCATCGGCACCTCGA-TGCTATGATGTGTCGG
** * ** * *
63858228 AGCCTCGGACACTGTCGGGAATGTAGGCTCTTGGTCATGCGGGAGCCTCGAGCACCATCGACACC
316 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACC
**
63858293 TT
381 AA
* * * * * * * * *
63858295 CGTGCTTGGATGTCCGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTCCGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCC
* * * * * * *
63858360 TCAGGCACCATCGGTAAACTAAGCACTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATT
66 TCGGGCACCATCGG-CACCTAGGC-CTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACATA
* * * **
63858424 GGCCCTTGGTCGTGCGAGAGCCTCG--GCCACCATCGGCACCTAGGAGCTTGGATGCGCGGGAGC
129 GGCCCATGGTCGTGCGAGAGCCT-GTAG-CACCATCGACACCTAGGTGCTTGGATGTACGGGAGC
** * * *
63858487 CTCAGACACCATCGGCAAACTAGGCCCGTGGTCTTGC-AGGAGCCTCGGGCACCATC-GATACAT
192 CTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGA-GAGCCTCGGACACCACCGGA-ACAT
* * * ** *
63858550 GTGTGCTCGGATGTGCGGGAGCCTCAAGCACCATCGACACCTC-AGTGCTATGATGTG-CTGGAG
255 GTATGATCGGTTGTGCAAGAGCCTCAAGCACCATCGGCACCTCGA-TGCTATGATGTGTC-GGAG
** * * * **
63858613 CCTCGGACACTGTCAGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGACACCTT
318 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACCAA
* * * * * * *
63858678 CGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTCCGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCC
* * * * * * *
63858743 TCGGGCACCATCGGTAAACTAAGCCCTT-GGTCGTGCGGGAGCGTCGGGCACCATCGGCAAAATT
66 TCGGGCACCATCGG-CACCT-AGGCCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACATA
** * *
63858807 GGCCTTTGGTCGTGCGAGAG-C-GTCGGCCACCATCGGCACCTAGGTGCTTGGATCTGTA--GGA
129 GGCCCATGGTCGTGCGAGAGCCTGT-AG-CACCATCGACACCTAGGTGCTTGGA--TGTACGGGA
* * * * * * * *
63858868 GCCACGGACACCATCGGCAAACTAGGCCCTTAGTCTTGCGGGAGCCTCAGG-CACCATCGGCATC
190 GCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTC-GGACACCACCGG-AAC
* * * * * ** * * * * * *
63858932 AAG-GTGCTTGGATGTGCGGGAGCCTCGAA-CACCATCGACAAACT--AGGCCTTTGGTCT-TGC
253 ATGTATGATCGGTTGTGCAAGAGCCTC-AAGCACCATCGGC-ACCTCGATG-CTATGATGTGT-C
* * * * * * * * * *
63858992 GGGAGCCTTGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGC-GAAAGCCTTGGGCACCATCGG
314 -GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAG-GAGCCTCGAGCACCATCGA
*
63859056 CA-CAT
377 CACCAA
* * ** ** * * * *
63859061 GTGCGCTCGGATGTTTGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-GTGCGGG
1 G-GTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACT-AG-GCCCT-TGGTCTTGCGGG
* * * * *** * *
63859122 AGCCTCGGACACTATCAGCAACCTAGGCCGTT-GGTCGTACCAAAGCCTCGGGCACCATCGGTAA
62 AGCCTCGGGCACCATCGGC-ACCTAGGCC-TTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
* * * * * ** * **
63859186 -AGT-GGGCCATTGGTTGTGCTAGAGCCTCG-GGCACCATCGGCACCTAGGACCTTGTATGCGCG
125 CA-TAGGCCCA-TGGTCGTGCGAGAGCCT-GTAGCACCATCGACACCTAGGTGCTTGGATGTACG
* * * * * *
63859248 GGAGCCTCAGACACCATCGGCAAACTAGGTCC-ATGGTCTTGCGGGAGCCTCGGGCACCATCGGC
187 GGAGCCTCAGACACCATCGGCAAACTAGG-CCTTTGGTCGTGCGAGAGCCTCGGACACCACCGGA
* * * * *** * *
63859312 ACTTGTGTGCTCGGATGTGTGGGAGCCTCAAGCACCATCGACACCTCGGTGCTATGATGTGTCGG
251 ACATGTATGATCGGTTGTGCAAGAGCCTCAAGCACCATCGGCACCTCGATGCTATGATGTGTCGG
* * * *
63859377 AGCCTCGGACACTATCGGCAACCTAGGCGCTTGGTCATGCGGGAGCCTCGAGCACCATCGACTCC
316 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACC
**
63859442 TT
381 AA
* * * * ** * *
63859444 CGTGCTTGGATGTCCGGGAACCTCGGACACCATCGG-AAACCTAGGCCCTTGGTAGTACGAGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAA-CTAGGCCCTTGGTCTTGCGGGAGC
* ** * * * * *
63859508 CTTGGGCACCATCGATAAACTAAGCCCTT-GGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAAT
65 CTCGGGCACCATCG-GCACCT-AGGCCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACAT
* * *
63859572 TGGCCCTTGGTCGTGCGAGAGCCTCG--GCCACCATCGTCACCTAGGTGCTTGGATGTACGGGAG
128 AGGCCCATGGTCGTGCGAGAGCCT-GTAG-CACCATCGACACCTAGGTGCTTGGATGTACGGGAG
* * * * * * * * * *
63859635 CCACAGACGCCATCGGCAAACTAGGCCATTGGTCTTGTGGGAGCCTCGGGCACCATCGGCACCTA
191 CCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGGAACAT-
* * * ** ** * * * * * * *
63859700 G-GTGCTTC-GATGTGCGGGAGCCTCGGGAACCGTCGGCA-ATCTAGGCCCT-TGGTCGTG-CTA
255 GTATG-ATCGGTTGTGCAAGAGCCTCAAGCACCATCGGCACCTCGATG--CTATGAT-GTGTC-G
* * ** *
63859760 GAGCCT-GTGGCACCATCGG-TACCTAGGTGCTTGG--ATGTACGGGAGCCTC-AGACACCATCG
315 GAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGGTCATG--CAGGAGCCTCGAG-CACCATCG
* * *
63859820 GCAAACTA
376 AC-ACCAA
* * ** * * ** * *
63859828 GG-CCTTTGG-TCTTGCGGGAGCCTCGGGCACCATCGACACA-T-GCGTGCTCGGT-TGTGCAGG
1 GGTGC-TTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAACTAG-GCCCTTGGTCT-TGCGGG
** * * * * ** **
63859888 AGCCTCAAGCACCATCGGTACCTCGGTGC-TATGAT-GTGCCTGAGCCTCGGACACTGTCGGCAA
62 AGCCTCGGGCACCATCGGCACCTAGG-CCTTA-GGTCGTGCGGGAGCCTCGGACACCATCGGCAA
* * * * ** *
63859951 CCTAGGCCCTTGGTCATGCGGGAGCCTCG-AGCACCATCGACACCTTCGTGCTTGGATGTGCGGG
125 CATAGGCCCATGGTCGTGCGAGAGCCT-GTAGCACCATCGACACCTAGGTGCTTGGATGTACGGG
* * * * * *
63860015 AACCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTAGGGCACCATCGGCAA-
189 AGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGG-AAC
* * ** * * * * *** *
63860079 ACTG-A-GCCTTTGGTCATGCAGGAGCCTCGAGCACCATCGGCAACATTGGCCCT-TGGTCGTG-
253 A-TGTATG--ATCGGTTGTGCAAGAGCCTCAAGCACCATCGGC-ACCTCGATGCTATGAT-GTGT
* * * * *** * * * *
63860140 CGAGAGCATCAGCCACCATCGAC-ACCTAGGTGGTTGGAT-GTGCGGGAGCCTCG-GCCACTATT
313 CG-GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCATGCAGGAGCCTCGAG-CACCATC
*
63860202 GCCACCTAA
375 GACACC-AA
* * * * * * * *
63860211 -GTGTTTGGATCTGCGAGAGCCTCGGACACCACCGGCAAAGTAGACCATTGGTCTTGCGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCC
* * * * * * *
63860275 TCGAGCACCATCGGTACCCT-GGTTCTTCGAT-GTGCGTGAGCCTCAGG-CACCATCGGCACCA-
66 TCGGGCACCATCGGCA-CCTAGG-CCTTAGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACAT
** * * * * * * * *
63860336 AGGTGCTTGGAT-GTACGGGAGCCTCG-AACACCATCGACAAACTAGG-CCTTTGG-TCTTGCGG
128 AGGCCCATGG-TCGTGCGAGAGCCT-GTAGCACCATCGAC-ACCTAGGTGC-TTGGAT-GTACGG
* * * * * * * * **
63860397 GAGCCTCGGGCACTATCGGCACA-T-GTGCGC-TCGGAT-GTCCGGGAGCCTCGGGCACCATTGG
188 GAGCCTCAGACACCATCGGCAAACTAG-GC-CTTTGG-TCGTGCGAGAGCCTCGGACACCACCGG
* * * * ** * * ** * * * * *** *
63860458 TACCT-CAGTGCTATGATGTCCGGGAGCCTC-GGACACTATCAGCAACCTGGGCCCT-TGGTCGT
250 AACATGTA-TGATCGGTTGTGCAAGAGCCTCAAG-CACCATCGGC-ACCTCGATGCTATGAT-GT
* * ** * ** *
63860520 G-CGAAAGCCTCGGGCACCATCGGCAAAATAGGCCATTGGTTGTGCTA-GAGCCTCGGGCACCAT
311 GTCG-GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGC-AGGAGCCTCGAGCACCAT
* *
63860583 CGGCACCTA
374 CGACACCAA
* * * * * *
63860592 GGAGCTTGGATGCGCGGGTGCCTC-AGACACCATCGACAAACTAGGCCCGTCGTCTTGCGGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGC
* * * * * * *
63860656 CTCAGGCACCATCGGCACAT-GTGTGCTCAGAT-GTGCGAGAGCCTCAGG-CACCATCGGC-ACC
65 CTCGGGCACCATCGGCACCTAG-G-CCTTAGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACA
* * * * * ** * * **
63860717 TTGGTGCTATGAT-GTGTCGA-AGCCTCGGA-CACTGTCGGCAACGTAGGCCCTTGGTCATG--C
127 TAGG-CCCATGGTCGTG-CGAGAGCCT-GTAGCACCATCGAC-ACCTAGGTGCTTGG--ATGTAC
* * ** * * * * *
63860777 GGGAGCCTC-GAGCACCATCGAC-ACCTTCG-TTCTTGGAT-GTCCGGGAACCTCGGACACCATC
186 GGGAGCCTCAGA-CACCATCGGCAAACTAGGCCT-TTGG-TCGTGCGAGAGCCTCGGACACCACC
* * * * * * * * *
63860838 GGTAAC--CTAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCAAACT--AAGCCCT-TG
248 GG-AACATGTATG--ATCGGTTGTGCAAGAGCCTCAAGCACCATCGGC-ACCTCGATG--CTATG
* * * ** * * * *
63860898 GTCGTGTGGGAGCCTCGGGCACCATCGGCAAAATAAGCCCTTGGCCGTG-TGAGAGCCTCG-GCT
307 AT-GTGTCGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAG-GAGCCTCGAGC-
* *
63860961 ACCATCGGCACCTA
369 ACCATCGACACCAA
** * *
63860975 GGTGCTTGGATGTGCGGGAGCGAC-AGACACCATCGACAAACTAGGCCCTTGGTCTTGCAGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGC
* * * * *
63861039 CTCGGGCACCATCGGCACCTAGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTA
65 CTCGGGCACCATCGGCACCTAGG-CCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACATA
* * * * * ** * *
63861103 GGCCCTTGATCGTTCTAAAGCCTGGGGCACCATCGGCACCTCGGTGCTTGGATGTACGGGAGCCT
129 GGCCCATGGTCGTGCGAGAGCCTGTAGCACCATCGACACCTAGGTGCTTGGATGTACGGGAGCCT
* * * * * **
63861168 CAGACACCATCGGCACACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCATCGG--CTACCTA
194 CAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGGAAC-ATGTA
* * * * ** * *
63861231 GGCCCTTGGTCGTGCGAA-AGCCTCGGGCACCATCGGCACAT-G-TGCGCTCA-GATGT-CCGGG
258 TG--ATCGGTTGTGC-AAGAGCCTCAAGCACCATCGGCACCTCGAT--GCT-ATGATGTGTC-GG
* * * * * * *
63861291 AGCCTCGTACACTATCGGCAACCTAGGCCATTGGTCGTACCGGAGCCTCAAGCACCATCGACAAC
316 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGAC-AC
**
63861356 CTT
380 CAA
** * * * * *
63861359 GGCCCTTGG-TCGTGCGAGAGCCT-TAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 GGTGCTTGGAT-GTGCGGGAGCCTCGA-ACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAG
* * ** * * * *
63861422 CCTCGGGCACTATCGACAAGATAGGCCCTT-GGTCGTGCGAGAGCCTTGGCCACCATCGGC-ACC
64 CCTCGGGCACCATCGGC-ACCTAGG-CCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACA
** * * * * * * *
63861485 TAGGTGCTTGGAT-GTGCGGGAGCCTCG-AACACCATCGGGA-AACTAGGCT-CTCGG-TCTTGC
127 TAGGCCCATGG-TCGTGCGAGAGCCT-GTAGCACCATC--GACACCTAGG-TGCTTGGAT-GTAC
* * * * * * * * * * *
63861545 GGGAGCCTCGGGCACCATAGGC-ACCTCGGTGCTTCGAT-GTGCTG-GAGCCTTGGGCACCATCG
186 GGGAGCCTCAGACACCATCGGCAAACTAGG-CCTTTGGTCGTGC-GAGAGCCTCGGACACCACCG
* * * * ** * ** * * * * * *
63861607 GCACCTAG-GTGCTTTGATGTGCGGGAGCCTC-GGACACCATCGGCAAACT--AGGCCTTTGGTC
249 GAACAT-GTATGATCGGTTGTGCAAGAGCCTCAAG-CACCATCGGC-ACCTCGATG-CTATGATG
* * * * * *
63861668 T-TGCGGGAGCCTC-GAGCACTATTGGCTACCTAGGCCCTTGGTCGTGC-GAAAGCCTCGGGCAC
310 TGT-C-GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCATGCAG-GAGCCTCGAGCAC
* *
63861730 CATTGGCA-C-A
371 CATCGACACCAA
* * ** * * * * * ** ** *
63861740 TGTGCTATCGGATGTCCAAGAGCCTCGGGA-TCTATCGGC-ACCTCGGTGCTATAAT-GTGCGGG
1 GGTGCT-T-GGATGTGCGGGAGCCTC-GAACACCATCGGCAAACTAGGCCCT-TGGTCTTGCGGG
* * * * *
63861802 AGCCTCGGACACTATCGGCAACCTAGGCCCTT-GGCCGTGCCGGAGCCTC-GAGCACCATCGACA
62 AGCCTCGGGCACCATCGGC-ACCTAGG-CCTTAGGTCGTGCGGGAGCCTCGGA-CACCATCGGCA
* * * * * * * * **
63861865 ACCTTGGCCCTTTGTCGTGCGAGAGCCTCG-GGCACCAAT-GGCAAACTAAGCCCTTGG-TCGTA
124 ACATAGGCCCATGGTCGTGCGAGAGCCT-GTAGCACC-ATCGAC-ACCTAGGTGCTTGGAT-GTA
* * * * * * * * * *
63861927 CGGAAGCCTCGGGCACTATCGACAAAATAGGCCCTTGGTCGTGCGAGAGCCTTGGCCACCATCGG
185 CGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGG
* * * * * * ** * * *** *
63861992 CACCTAG-GTGCTTGGATGTGCGGGA-CCGTTCAA-CACCATCGACAACCTTGGCCCT-TGGTCG
250 AACAT-GTATGATCGGTTGTGCAAGAGCC--TCAAGCACCATCGGC-ACCTCGATGCTATGAT-G
* * * * * *
63862053 TG-CGGGAGCCTCGAACACCATTGGCAACCTTGGCCCTTGGTCGTGC-GAGAGCCTCGGGCTCCA
310 TGTC-GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAG-GAGCCTCGAGCACCA
* **
63862116 TCGGCAAAATA
373 TCGACACCA-A
** * * ** ** * ** * *
63862127 GGCCCTTGG-TCGTGAGAGAGCCTCGGCCACCATAAGC-ACCTAGGTGCTTAGAT-GTGCGGGAG
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTT-GGTCTTGCGGGAG
* * * * * * * * *
63862189 CCTCGGACACCATCGGCAAACTAGGCCCTT-GGTCCTACAGGAGCCTTGGGCACCATTGGCAAAA
64 CCTCGGGCACCATCGGC-ACCTAGG-CCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACA
* * * ** * *
63862253 TAGGCCCTTGGTCGTGCAAGAGCCTCG-GGCACCATCGGTACCTAGGAGCTTGGATGTGCGGGAG
127 TAGGCCCATGGTCGTGCGAGAGCCT-GTAGCACCATCGACACCTAGGTGCTTGGATGTACGGGAG
* * ** ** * * * *
63862317 CCTCAGAAACCATCGGTAAACTAGGCCCGTGGTATTGCGGGAGCCTCAGACACCATCGGTACATG
191 CCTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGGAACATG
** * * * ** * * *
63862382 TGCGCTCAGATGT-CTGGGAACCTC-AGCCACCATCGGCACCTCGGTGCTGTGATGTG-CGGCAG
256 TATGATCGGTTGTGC-AAGAGCCTCAAG-CACCATCGGCACCTCGATGCTATGATGTGTCGG-AG
** * * * * * **
63862444 CCTCGGACACTGTCGACAACCTAGGCCCTTAGTCGTGCGGGAACCTCGAGCACCATCGACACCTT
318 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACCAA
* * * * * * *
63862509 CGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCGAGGCCCTTGGTCATGCGAGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCC
* * * * * * * * * *
63862574 TCGGGCACCTTCGGTAAACTAAGCCCTT-GGTCCTGCGGGAGCCTCGGGCATCATCGCCAAAATT
66 TCGGGCACCATCGG-CACCT-AGGCCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACATA
* * *
63862638 GGCCCTTGGTCGTGC-AGGAGCCT-TGACCACCATCGACACCTAGGTGCTTGGATGTGCGGGAGC
129 GGCCCATGGTCGTGCGA-GAGCCTGT-AGCACCATCGACACCTAGGTGCTTGGATGTACGGGAGC
* * * *
63862701 CTCAGTCACCATCGGCAAACTAGGCCATTGGTCTTGCGGGAGCCTCGG-CACCA
192 CTCAGACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCA
63862754 TCGGCACCTC
Statistics
Matches: 6704, Mismatches: 1441, Indels: 1008
0.73 0.16 0.11
Matches are distributed among these distances:
362 3 0.00
363 55 0.01
364 30 0.00
365 63 0.01
366 124 0.02
367 4 0.00
370 1 0.00
371 1 0.00
372 1 0.00
375 3 0.00
376 1 0.00
377 2 0.00
378 2 0.00
379 2 0.00
380 81 0.01
381 403 0.06
382 1584 0.24
383 3200 0.48
384 802 0.12
385 326 0.05
386 12 0.00
387 4 0.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (382 bp):
GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCC
TCGGGCACCATCGGCACCTAGGCCTTAGGTCGTGCGGGAGCCTCGGACACCATCGGCAACATAGG
CCCATGGTCGTGCGAGAGCCTGTAGCACCATCGACACCTAGGTGCTTGGATGTACGGGAGCCTCA
GACACCATCGGCAAACTAGGCCTTTGGTCGTGCGAGAGCCTCGGACACCACCGGAACATGTATGA
TCGGTTGTGCAAGAGCCTCAAGCACCATCGGCACCTCGATGCTATGATGTGTCGGAGCCTCGGAC
ACCATCGGCAACCTAGGCCCTTGGTCATGCAGGAGCCTCGAGCACCATCGACACCAA
Found at i:63855190 original size:212 final size:212
Alignment explanation
Indices: 63854972--63856225 Score: 570
Period size: 212 Copynumber: 5.9 Consensus size: 212
63854962 TGGTCATCCG
* *
63854972 GGAGCCTCGAGCACCATCAACACCTTC-GTGCT-TGGATGT-CCGGGAACCTCGGGCACCATCGG
1 GGAGCCTCAAGCACCATCAACACC-TCGGTGCTAT-GATGTGCC-GGAACCTCGGACACCATCGG
* * * ** *
63855034 CAACCTAGGCCCTTGGTCGTGCTAGAGCCT-GTGGCACCATCGGTACCTAGGTGCTTGGATGTAC
63 CAACCTAGGCCCTTGGTCATGCGAGAGCCTCG-AGCACCATCGACACCTACGTGCTTGGATGTAC
* * * *
63855098 GGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCATCGGC
127 GGGAACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
63855163 ACATGTGTGCTCGGTTGTGCA
192 ACATGTGTGCTCGGTTGTGCA
*** * *
63855184 GGAGCCTCAAGCACCATCGGTACCTCGGTGCTATGATGTGCCGGAGCCTCGGACACTATCGGCAA
1 GGAGCCTCAAGCACCATCAACACCTCGGTGCTATGATGTGCCGGAACCTCGGACACCATCGGCAA
* * *
63855249 CCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGGGA
66 CCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCGACACCTACGTGCTTGGATGTACGGGA
* * * *
63855314 ACCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCGGTAAAC
131 ACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACA-
** * * * *
63855379 TAAG-CCTTTGGTCGTGCG
195 TGTGTGC-TCGGTTGTGCA
** * ** * * ** * * ** * * *
63855397 GGAGCCTCGGGCACCGTCGGCAACATTGGCCCT-TGGTCGTG-CGAGAGCCTTAGCCACCATTGA
1 GGAGCCTCAAGCACCATCAAC-ACCTCGGTGCTATGAT-GTGCCG-GAACCTCGGACACCATCGG
* ** * * * * *
63855460 C-ACTTAGGTGCTTGG--ATGTACGGGAGCCTCG-GCCACTATTGGCACCTAGGTGCTTGGATGT
63 CAACCTAGGCCCTTGGTCATG--CGAGAGCCTCGAG-CACCATCGACACCTACGTGCTTGGATGT
** * * * * * * * * *
63855521 GTGAGAGCCTCGGACACCACCGGCAAAGTAGACCCTTGGTCTTGCGGGAGCCTCGAGCACCATCG
125 ACGGGAACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* *
63855586 GCACCCTGAT-T-CTTC-GATGTGC-
190 GCA-CATG-TGTGC-TCGGTTGTGCA
** ** * ** * ** * *
63855608 GAGAGCCTCGGGCACCATCGGCGACCTAGGCCCT-TGGTCGTGCTAGAGCCTCGGGCACCATCGG
1 G-GAGCCTCAAGCACCATCAAC-ACCTCGGTGCTATGAT-GTGCCGGAACCTCGGACACCATCGG
* *** * * * ** * * ** *
63855672 C-ACCAAGTTACTTGGAT-GTGCGGGAGCCTCGGGCACTGTCAACTACCTAGGCCCTAGG-TCGT
63 CAACCTAGGCCCTTGG-TCATGCGAGAGCCTCGAGCACCATCGAC-ACCTACGTGCTTGGAT-GT
* * *** * * * * *
63855734 GC-GAAAGCCTC-GAGCACCATTACCACA-T-GTGCGCTCGGAT-GTCCGGGAGCCTCGGGCACC
125 ACGGGAA-CCTCAGA-CACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGAGAGCCTCGGGCACC
* * ** ** * *
63855794 ATCGGTACCTCAGTGCTATGATGTGCG
186 ATCGGCACATGTGTGCTCGGTTGTGCA
* * * * * ** * * * *
63855821 GGAGGCTC-GGACACTATCAGCAACCTAGGCCCT-TGGTCGTG-CGAAAGCCTTGGGCACCATCG
1 GGAGCCTCAAG-CACCATCAAC-ACCTCGGTGCTATGAT-GTGCCGGAA-CCTCGGACACCATCG
** * ** * * *
63855883 GCAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCTG-CACCTAGGAT-CTTGGATGT
62 GCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATC-GACACCTACG-TGCTTGGATGT
* ** * * * * * *
63855946 GCGGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTCTTACGGGAGCCTCGGGCACCATCG
125 ACGGGAACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* *
63856011 GCACATGTGTGCTCGGATGTGCG
190 GCACATGTGTGCTCGGTTGTGCA
* ** * * ** *
63856034 GGAGCCTCAGGCACCATCGGCACCTCGGTGCTATGATGTGTCGGAGCCTCGGACACTGTCGGGAA
1 GGAGCCTCAAGCACCATCAACACCTCGGTGCTATGATGTGCCGGAACCTCGGACACCATCGGCAA
* * * * *
63856099 CGTAGGCTCTTGGTCATGCGGGAGCCTTGAGCACCATCGACACCTTCGTGCTTGGATGT-CTGGG
66 CCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCGACACCTACGTGCTTGGATGTAC-GGG
* * * * * *
63856163 AACCTCGGATACCATCGGTAACCTAGGCCCTTGGTCGTCCGAGAGCCTCAGGCACCATCGGCA
130 AACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
63856226 AACTAAGCAC
Statistics
Matches: 798, Mismatches: 196, Indels: 96
0.73 0.18 0.09
Matches are distributed among these distances:
211 18 0.02
212 486 0.61
213 265 0.33
214 29 0.04
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.21
Consensus pattern (212 bp):
GGAGCCTCAAGCACCATCAACACCTCGGTGCTATGATGTGCCGGAACCTCGGACACCATCGGCAA
CCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCGACACCTACGTGCTTGGATGTACGGGA
ACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACAT
GTGTGCTCGGTTGTGCA
Found at i:63856680 original size:171 final size:170
Alignment explanation
Indices: 63856486--63857272 Score: 631
Period size: 171 Copynumber: 4.7 Consensus size: 170
63856476 CAGCAACCTA
* *
63856486 GGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTTCGAGAACCT
1 GGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGAGAACCT
* * *
63856551 CGGACACCATCGGTAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGACACCATCGGCAAACTAAG
66 CGGACACCAT-GGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAG
* * *
63856616 CCTTTAGTCGTGCGGGAGCCTCAGGCACCGTCGGCAAAATT
130 CCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATT
* * * ** *
63856657 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTA-ACC-TAGACCCTTGG-TCGTGCTAGA
1 GGCCCTTGGTCATGCGAGAGCCTCGAGCACCATC-G-ACACCTTCG-TGCTTGGAT-GTGCGAGA
* * * ** * *
63856719 GCCTCGGGCACCATGGGC-ACCAAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGACAAA
62 ACCTCGGACACCAT-GGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAAA
* * * * ** *
63856782 CTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACTATCGGCTACCTA
125 CTAAGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATT
* * *
63856828 GGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGACTCCTTCGTGCTTGGATGTGCGGGAACCT
1 GGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGAGAACCT
* * *
63856893 CGGACACCATTGGCAACCTAGGCCCTTAGTCGTGCGAGAGCCTTGGGCACCATCGGTAAACTAAG
66 CGGACACCA-TGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAG
* * *
63856958 CCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACAATT
130 CCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATT
* * * * *
63856999 AGCCCTTGGTCGTGC--GA-----GAG--CC-TCG--------GTGCTTGGATGTGCGGGAGCCA
1 GGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGAGAACCT
* * * * * * **
63857046 CAGACACCATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGCCTCGGGCACCATCGGC-ACCTGGG
66 CGGACACCAT-GGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAG
* * * * **
63857110 TGCTTCGAT-GTGCGGAAGCCTCGGGCACCATCGGCAACCTT
130 -CCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATT
* * * * ** * * *
63857151 GGCCCTTGGTCGTGCTAGAGCCT-GTGGCACCATCGGCACCTAGGTGCTTGGATGTACGGGAGCC
1 GGCCCTTGGTCATGCGAGAGCCTCG-AGCACCATCGACACCTTCGTGCTTGGATGTGCGAGAACC
* * * * *
63857215 TCAGACACCATCGGCAAACTAGG-CCTTTGT-GTTGCGGGAGCCTCGGGCACCAGCGGCA
65 TCGGACACCAT-GGCAACCTAGGCCCTTGGTCG-TGCGAGAGCCTCGGGCACCATCGGCA
63857273 CATGTGTGCT
Statistics
Matches: 493, Mismatches: 90, Indels: 67
0.76 0.14 0.10
Matches are distributed among these distances:
152 46 0.09
153 71 0.14
154 2 0.00
158 1 0.00
159 1 0.00
161 5 0.01
162 5 0.01
164 3 0.01
169 32 0.06
170 71 0.14
171 225 0.46
172 30 0.06
173 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (170 bp):
GGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGAGAACCT
CGGACACCATGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGC
CTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATT
Found at i:63857097 original size:43 final size:43
Alignment explanation
Indices: 63857034--63864975 Score: 4471
Period size: 43 Copynumber: 186.6 Consensus size: 43
63857024 GTGCTTGGAT
* * * *
63857034 GTGCGGGAGCCACAGACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *
63857077 TTGTGGGAGCCTCGGGCACCATCGGC-ACCTGGGTGCTTCGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* *
63857119 GTGCGGAAGCCTCGGGCACCATCGGCAACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** **
63857162 GTGCTAGAGCCT-GTGGCACCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCG-GGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
63857204 GTACGGGAGCCTCAGACACCATCGGCAAACTAGG-CCTTTGT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * *
63857245 GTTGCGGGAGCCTCGGGCACCAGCGGC-ACAT-GTGTGCTCGGTT
1 G-TGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGGTC
* ** * * *** *
63857288 GTGCAGGAGCCTCAAGCACCATCGG-TACCTCGATGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * *
63857330 GTGCCGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * ** **
63857373 ATGCGAGAGCCTCGAGCA-CATCGAC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
63857414 GTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
63857457 GTACGAGAGCCTCGGGCACCATTGGCAAACTAAGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
63857500 GTGCGGGAGCCTCGGGCACCGTCGGCAACATTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * * * ***
63857543 GTGCGAGAGTCTTAGCCACCATCGAC-ACTTAGGTGGTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
** * * **
63857585 GTGCGGGAGCCTCGACCACTATTGGC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * * ** *
63857627 GTGTGAGAGCCTCAGACACCACCGGTAAAGTAGACCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *** *
63857670 -TTCGGGAGCCTCGAGCACTATCGGC-ACCCCGATTCTTCGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* **
63857711 GTGCGAGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * **
63857754 CTGCTAGAGCCTCGGGCACCATCGGC-ACCAAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
** * * *
63857796 GTGCGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
63857839 TTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * * *
63857882 GTGCGAAAGCCTCGAGCACCATCGGC-ACAT-GTGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TC
* * *
63857924 GTCCGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTC
* * * *
63857966 GTGCGGGAGGCTCGGACACTATCAGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*** ** * *
63858009 GTGCTAAAGCCTCGGGCACCATCGGCAAAATAGGCCATTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** ** **
63858052 GTGCTAGAGCCTCGGGCACCATCTAC-ACCTAGGATCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * * *
63858094 GTGCGGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
63858137 TTGCGGGAGCCTCGGGCACCATCGGC-ACAT-GTGTGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TC
* * *
63858179 GTGCGAGAGCCTCAGGCACCATCGGC-ACCTCAGTG--CTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTC
* * * ** * ** *
63858221 GTACCGGAGCCTCGGACACTGTCGGGAATGTAGGCTCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** **
63858264 ATGCGGGAGCCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
63858306 GTCCGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
63858349 GTCCGAGAGCCTCAGGCACCATCGGTAAACTAAGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** *
63858392 GTGCGGGAGCCTCGGGCACCATCGGCAAAATTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
63858435 GTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGAGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
63858477 GCGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCGTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *
63858520 TTGCAGGAGCCTCGGGCACCATC-G-ATACAT-GTGTGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCA-ACCTAG-GCCCTTGG-TC
** * *
63858562 GTGCGGGAGCCTCAAGCACCATCGAC-ACCTCAGTG--CTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTC
* * ** * *
63858604 GTGCTGGAGCCTCGGACACTGTCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** **
63858647 ATGCGGGAGCCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
63858689 GTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
63858732 GTCCGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
63858775 GTGCGGGAGCGTCGGGCACCATCGGCAAAATTGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
63858818 GTGCGAGAGCGTCGGCCACCATCGGC-ACCTAGGTGCTTGGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
** * * * *
63858861 -TGTAGGAGCCACGGACACCATCGGCAAACTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
63858903 TTGCGGGAGCCTCAGGCACCATCGGC-ATCAAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
** * * *
63858945 GTGCGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
63858988 TTGCGGGAGCCTTGGGCACTATCGGCTACCTAGGCCCTAGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * * *
63859031 GTGCGAAAGCCTTGGGCACCATCGGC-ACAT-GTGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TC
** * *
63859073 GTTTGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTC
* * * *
63859115 GTGCGGGAGCCTCGGACACTATCAGCAACCTAGGCCGTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *** * ** * * *
63859158 GTACCAAAGCCTCGGGCACCATCGGTAAAGTGGGCCATTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * *
63859201 GTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGACCTT-GTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT-C
* * * * * *
63859243 GCGCGGGAGCCTCAGACACCATCGGCAAACTAGGTCCATGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
63859286 TTGCGGGAGCCTCGGGCACCATCGGC-A-CTTGTGTGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TC
* ** * * ** *
63859328 GTGTGGGAGCCTCAAGCACCATCGAC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * *
63859370 GTGTC-GGAGCCTCGGACACTATCGGCAACCTAGGCGCTTGGTC
1 GTG-CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * ** **
63859413 ATGCGGGAGCCTCGAGCACCATCGAC-TCCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
63859455 GTCCGGGAACCTCGGACACCATCGGAAACCTAGGCCCTTGGTA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** * *
63859498 GTACGAGAGCCTTGGGCACCATCGATAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** *
63859541 GTGCAGGAGCCTCGGGCACCATCGGCAAAATTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
63859584 GTGCGAGAGCCTCGGCCACCATCGTC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * * *
63859626 GTACGGGAGCCACAGACGCCATCGGCAAACTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
63859669 TTGTGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTCGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * *
63859711 GTGCGGGAGCCTCGGGAACCGTCGGCAATCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * **
63859754 GTGCTAGAGCCT-GTGGCACCATCGG-TACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCG-GGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
63859796 GTACGGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** * *
63859839 TTGCGGGAGCCTCGGGCACCATCGAC-ACAT-GCGTGCTCGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGGTC
* ** * * ** *
63859881 GTGCAGGAGCCTCAAGCACCATCGG-TACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
** * **
63859923 GTGCCTGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** **
63859966 ATGCGGGAGCCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
63860008 GTGCGGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
63860051 GTGCGAGAGCCTAGGGCACCATCGGCAAACT-GAGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGGTC
* * * * *
63860094 ATGCAGGAGCCTCGAGCACCATCGGCAACATTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * ***
63860137 GTGCGAGAGCATCAGCCACCATCGAC-ACCTAGGTGGTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * ***
63860179 GTGCGGGAGCCTCGGCCACTAT-TGCCACCTAAGTGTTTGGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * ** * *
63860222 -TGCGAGAGCCTCGGACACCACCGGCAAAGTAGACCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * ** *
63860264 TTGCGGGAGCCTCGAGCACCATCGGTACCCT-GGTTCTTCGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * **
63860306 GTGCGTGAGCCTCAGGCACCATCGGC-ACCAAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* ** * * *
63860348 GTACGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
63860391 TTGCGGGAGCCTCGGGCACTATCGGC-ACAT-GTGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TC
* * * *
63860433 GTCCGGGAGCCTCGGGCACCATTGG-TACCTCAGTG--CTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCT-TGGTC
* * * * *
63860475 GTCCGGGAGCCTCGGACACTATCAGCAACCTGGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** ** * *
63860518 GTGCGAAAGCCTCGGGCACCATCGGCAAAATAGGCCATTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** **
63860561 GTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGAGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * * * *
63860603 GCGCGGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** * *
63860646 TTGCGGGAGCCTCAGGCACCATCGGC-ACAT-GTGTGCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCT-TGGTC
* * * ** *
63860688 GTGCGAGAGCCTCAGGCACCATCGGC-ACCTTGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * ** *
63860730 GTGTC-GAAGCCTCGGACACTGTCGGCAACGTAGGCCCTTGGTC
1 GTG-CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** **
63860773 ATGCGGGAGCCTCGAGCACCATCGAC-ACCTTCGTTCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
63860815 GTCCGGGAACCTCGGACACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
63860858 GTGCGAGAGCCTCAGGCACCATCGGCAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
63860901 GTGTGGGAGCCTCGGGCACCATCGGCAAAATAAGCCCTTGGCC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
63860944 GTGTGAGAGCCTC-GGCTACCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGC-ACCATCGGCAACCTAGGCCCTTGG-TC
** * * * *
63860986 GTGCGGGAGCGACAGACACCATCGACAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
63861029 TTGCAGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTCGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
*
63861071 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *** * * **
63861114 GTTCTAAAGCCTGGGGCACCATCGGC-ACCTCGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
63861156 GTACGGGAGCCTCAGACACCATCGGC-ACACTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAC-CTAGGCCCTTGGTC
* *
63861199 TTGCGGGAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * * *
63861242 GTGCGAAAGCCTCGGGCACCATCGGC-ACAT-GTGCGCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCT-TGGTC
* ** * *
63861284 GTCCGGGAGCCTCGTACACTATCGGCAACCTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * *
63861327 GTACCGGAGCCTCAAGCACCATCGACAACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
63861370 GTGCGAGAGCCTTAGGCACCATCGGCAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
63861413 GTGCGGGAGCCTCGGGCACTATCGACAAGATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
63861456 GTGCGAGAGCCTTGGCCACCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
** * * * *
63861498 GTGCGGGAGCCTCGAACACCATCGGGAAACTAGGCTCTCGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *
63861541 TTGCGGGAGCCTCGGGCACCATAGGC-ACCTCGGTGCTTCGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * * *
63861583 GTGCTGGAGCCTTGGGCACCATCGGC-ACCTAGGTGCTTTGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTC
* * *
63861625 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
63861668 TTGCGGGAGCCTCGAGCACTATTGGCTACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * ** *
63861711 GTGCGAAAGCCTCGGGCACCATTGGC-ACAT-GTGCTATCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TC
* ** * * ** **
63861753 GTCCAAGAGCCTCGGG-ATCTATCGGC-ACCTCGGTGCTATAAT-
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCT-TGGTC
* * *
63861795 GTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGCC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
63861838 GTGCCGGAGCCTCGAGCACCATCGACAACCTTGGCCCTTTGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
63861881 GTGCGAGAGCCTCGGGCACCAAT-GGCAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACC-ATCGGCAACCTAGGCCCTTGGTC
* * * * **
63861924 GTACGGAAGCCTCGGGCACTATCGACAAAATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
63861967 GTGCGAGAGCCTTGGCCACCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
** * *
63862009 GTGCGGGA-CCGTTC-AACACCATCGACAACCTTGGCCCTTGGTC
1 GTGCGGGAGCC--TCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * *
63862052 GTGCGGGAGCCTCGAACACCATTGGCAACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
63862095 GTGCGAGAGCCTCGGGCTCCATCGGCAAAATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** ** *
63862138 GTGAGAGAGCCTCGGCCACCATAAGC-ACCTAGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* *
63862180 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * **
63862223 CTACAGGAGCCTTGGGCACCATTGGCAAAATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * **
63862266 GTGCAAGAGCCTCGGGCACCATCGG-TACCTAGGAGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* ** * * * *
63862308 GTGCGGGAGCCTCAGAAACCATCGGTAAACTAGGCCCGTGGTA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * *
63862351 TTGCGGGAGCCTCAGACACCATCGG-TACAT-GTGCGCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCT-TGGTC
* * * * ** *
63862393 GT-CTGGGAACCTCAGCCACCATCGGC-ACCTCGGTGCTGTGAT-
1 GTGC-GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * ** * *
63862435 GTGCGGCAGCCTCGGACACTGTCGACAACCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** **
63862478 GTGCGGGAACCTCGAGCACCATCGAC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
63862520 GTGCGGGAACCTCGGACACCATCGGCAACCGAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
63862563 ATGCGAGAGCCTCGGGCACCTTCGGTAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *
63862606 CTGCGGGAGCCTCGGGCATCATCGCCAAAATTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * **
63862649 GTGCAGGAGCCTTGACCACCATCGAC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
63862691 GTGCGGGAGCCTCAGTCACCATCGGCAAACTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
63862734 TTGCGGGAGCCTC-GGCACCATCGGC-ACCTCAGTG--CTTCGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AG-GCCCTT-GGTC
63862775 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * **
63862818 GTGCTAGACCCTCGGGCACCATCGGC-ACTTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
63862860 GTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
63862903 TTGCGGGAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * ** * * * *
63862946 GTGCGAAAGCCTCAGGCACCATTAGC-ACAT-GTTCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TC
* * * *** *
63862988 GTTCGGGAGCCTCGGGCACCATCAGC-ACCTCGGTGTTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * * *
63863030 GTGCGAGAGCCTCAGACACTATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * *
63863073 GTGCCAGAGCCTCGAGCACCATCGACAACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
63863116 GTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * ** * *
63863159 GTGCAAGAGCCTCAGGCACCATCGGTAAAATAGGCCATTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
63863202 GTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* ** *
63863244 GTGCGGGACCCTCGAACACCATCAGCAACCTTA-GCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTTGGTC
*** * *
63863287 GTGCGGGAGCCTCGAAAACCATTGGCAACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
63863330 GTGCGAGAGCCTCGGGCTCCATCGGTAAAATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** **
63863373 GTGCGAGA-CCTC-GGCTACCATCGGC-ATTTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGC-ACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
63863414 GTGTGGGAGCCTCGGACACCATCGGCAAACTGGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
63863457 GTGCAGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
63863500 GTGCGGGAGCCTCAGGCACCATCGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * ** **
63863542 GTGCGGGAGCCTCAGACACTGTCGATAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
63863585 GTGCGGGAGCCTCGAGCACCATCGAC-ACATTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
63863627 GTGCGGGAACCTCGTGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * * *
63863670 GTACGTGAGCGTTGGGCACCAACGACAAACTAAGCCCTTGGCC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
63863713 GTACGAGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
63863755 GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
63863798 TTACAGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTTGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTC
*
63863840 GTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** **
63863883 GTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
63863925 GTGCGGGTGCCTCGGACACCATCGGCAAACTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
63863968 TTGCGGGAGCCTCGAGCACCATCGGCTACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** ** ** * *
63864011 GTATGAAAGCCTCAAGCACCATCGGC-A--TATGTGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-G-GCCCTTGG-TC
* * ** *
63864053 GTTCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * *
63864095 GTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * *
63864138 GTGCCAGAGCCTCGAGCACCATCGACAACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
63864181 GTGTGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
63864224 GTGCGGAAGCCTCGGGCACCATTGGCAAAATAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*** * **
63864267 GTGCAAAAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * ** * *
63864309 GTACGGGACCCTCGAACACCATCGGTAACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** *
63864352 GTGCGGGAGCCTCGAACACCATTGGCAACCTTA-GCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTTGGTC
* * * **
63864395 GTGCGAGAGCCTCGGGCTCCATCGACAAAATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
63864438 GTGTGAGA-CCTC-GGCTACCATCGGC-ACCTAGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGC-ACCATCGGCAACCTAGGCCCTT-GGTC
* * *
63864479 GTGCGGGAGCCTCGGACACCATCGGCAAACTGGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
** * * *
63864522 GTGTAGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
63864565 GTACGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * ** **
63864607 GTGCGGGAGCCTCAGACACTGTCGATAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ***
63864650 GTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGATGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
63864692 GTGCGGGAACCTCGTGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
63864735 ATACGAGAGCCTTGGGCACCATCGGCAAACTATGCCCTTGGCC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
63864778 GTGCGAGAGCCTCGGCCACCATCGGC-ACCTAAGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
63864820 GTACGGGAGCCTCGGGCACCATCGGC-ACCT-TGCTGGCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC--CCT-TGGTC
* * * ** *
63864863 GTGCGGGAGCCTCGGGCAGCATCAG-AACCTCGGTGGCTAGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TC
* * * ** *
63864906 GTGCGGGAGCCTCGGACACCATCGTCAACCTTGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* *
63864949 GTACGGGACCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
63864976 CCTTGGTGCT
Statistics
Matches: 5947, Mismatches: 1654, Indels: 596
0.73 0.20 0.07
Matches are distributed among these distances:
40 3 0.00
41 120 0.02
42 2341 0.39
43 3444 0.58
44 39 0.01
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:63858774 original size:766 final size:759
Alignment explanation
Indices: 63857708--63859746 Score: 2345
Period size: 766 Copynumber: 2.7 Consensus size: 759
63857698 CCGATTCTTC
* * * * * * *
63857708 GATGTGCGAGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCCTGCTA-GAGCCTCGGGCA
1 GATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCATGGTCTTGC-AGGAGCCTCGGGCA
* * *
63857772 CCATCGGCACCAAG-GTGCTTGGATGTGCGGGAGCCTCGAA-CACCATCGACAAACT-AG-GCCT
65 CCATCGGCA-CATGTGTGCTCGGATGTGCGGGAGCCTC-AAGCACCATCGAC-ACCTCAGTG-CT
* * * * * * * **
63857833 TTGGTCTTGCGGGAGCCTCGGGCACTATCGGCT-ACCTAGGCCCTAGGTCGTGCGAAAGCCTCGA
126 ATGAT-GTGCTGGAGCCTCGGACACTATCGG-TAACCTAGGCCCTTGGTCATGCGGGAGCCTCGA
* * * * * * *
63857897 GCACCATCGGCACATGT-GCGCTCGGATGTCCGGGAGCCTCGGGCACCATCGGTACCTCAGTG--
189 GCACCATCGACACCT-TCGTGCTTGGATGTCCGGGAACCTCGGACACCATCGGAACCT-AG-GCC
* * * * * * * * * * *
63857959 CTATGATGTGCGGGAGGCTCGGACACTATCAGCAACCTAGGCCCTTGGTCGTGCTAAAGCCTCGG
251 CT-TGGTGTACGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGC-AGAGCCTCGG
* * * *
63858024 GCACCATCGGCAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCTACACCTAGGAT-C
314 GCACCATCGGCAAAATTGGCCATTGGTCGTGCGAGAGCCTCGGCCACCATCT-CACCTAGG-TGC
* * * * *
63858088 TTGGATGTGCGGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTCTTGCGGGAGCCTCGGG
377 TTGGATGTGCGGGAGCCACAGACACCATCGGCAAACTAGGCCCTTAGTCTTGCGGGAGCCTCGGG
* *
63858153 CACCATCGGCACATGTGTGCTCGGATGTGCGAGAGCCTCAGGCACCATCGGCACCTCAGTG-CTA
442 CACCATCGGCACATG-GTGCTCGGATGTGCGGGAGCCTC-GGCACCATCGGCAACT-AG-GCCTA
* * ** * * **
63858217 TGAT-GTACCGGAGCCTCGGACACTGTCGGGAATGTAGGCTCTTGGTCATGCGGGAGCCTCGAGC
503 TGATCGTACCGGAGCCTCGGACACTATCGGCAACCTAGGCCCTAGGTCATGCGAAAGCCTCGAGC
* * *
63858281 ACCATCGACACCT-TCGTGCTTGGATGTCCGGGAACCTCGGACACCATCGGTAACCT-AG-GCCC
568 ACCATCGACACATGT-GCGCTCGGATGTCCGGGAACCTCGGACACCATCGGT-ACCTCAGTG--C
* * * * ***
63858343 T-TGGTCGTCCGAGAGCCTCAGG-CACCATCGGTAAACTAAGCAC-TTGGTCGTGCGGGAGCCTC
629 TATGAT-GTCCGAGAGCCTC-GGACACCATCAGCAAACTAAGC-CGTTGGTCGTACCAAAGCCTC
* * *
63858405 GGGCACCATCGGCAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGAG
691 GGGCACCATCGGCAAAATGGGCCATTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGAC
63858470 CTTG
756 CTTG
*
63858474 GATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCGTGGTCTTGCAGGAGCCTCGGGCAC
1 GATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCATGGTCTTGCAGGAGCCTCGGGCAC
**
63858539 CATCGATACATGTGTGCTCGGATGTGCGGGAGCCTCAAGCACCATCGACACCTCAGTGCTATGAT
66 CATCGGCACATGTGTGCTCGGATGTGCGGGAGCCTCAAGCACCATCGACACCTCAGTGCTATGAT
* *
63858604 GTGCTGGAGCCTCGGACACTGTCAGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCAT
131 GTGCTGGAGCCTCGGACACTATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCAT
*
63858669 CGACACCTTCGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGT
196 CGACACCTTCGTGCTTGGATGTCCGGGAACCTCGGACACCATCGG-AACCTAGGCCCTTGGT-GT
* * *
63858734 CCGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCGTCGGGCACCATCG
259 ACGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGC-AGAGCCTCGGGCACCATCG
* * * * *
63858799 GCAAAATTGGCCTTTGGTCGTGCGAGAGCGTCGGCCACCATCGGCACCTAGGTGCTTGGATCTGT
323 GCAAAATTGGCCATTGGTCGTGCGAGAGCCTCGGCCACCATC-TCACCTAGGTGCTTGGATGTGC
* * *
63858864 AGGAGCCACGGACACCATCGGCAAACTAGGCCCTTAGTCTTGCGGGAGCCTCAGGCACCATCGGC
387 GGGAGCCACAGACACCATCGGCAAACTAGGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATCGGC
* * * * * * * * *
63858929 ATCAAGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGGTCTTGCGG
452 A-CATGGTGCTCGGATGTGCGGGAGCCTCG-GCACCATCGGC-AACTAGGCCTATGATCGTACCG
* * * * * * *
63858994 GAGCCTTGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGCGAAAGCCTTGGGCACCATCGGCAC
514 GAGCCTCGGACACTATCGGCAACCTAGGCCCTAGGTCATGCGAAAGCCTCGAGCACCATCGACAC
** * * * *
63859059 ATGTGCGCTCGGATGTTTGGGAGCCTCGGGCACCATCGGTACCTCAGTGCTATGATGTGCGGGAG
579 ATGTGCGCTCGGATGTCCGGGAACCTCGGACACCATCGGTACCTCAGTGCTATGATGTCCGAGAG
* * * * *
63859124 CCTCGGACACTATCAGCAACCTAGGCCGTTGGTCGTACCAAAGCCTCGGGCACCATCGGTAAAGT
644 CCTCGGACACCATCAGCAAACTAAGCCGTTGGTCGTACCAAAGCCTCGGGCACCATCGGCAAAAT
* * *
63859189 GGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCACCTAGGACCTTG
709 GGGCCATTGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGACCTTG
* * *
63859240 TATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGGTCCATGGTCTTGCGGGAGCCTCGGGCAC
1 GATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCATGGTCTTGCAGGAGCCTCGGGCAC
* * *
63859305 CATCGGCACTTGTGTGCTCGGATGTGTGGGAGCCTCAAGCACCATCGACACCTCGGTGCTATGAT
66 CATCGGCACATGTGTGCTCGGATGTGCGGGAGCCTCAAGCACCATCGACACCTCAGTGCTATGAT
* *
63859370 GTG-TCGGAGCCTCGGACACTATCGGCAACCTAGGCGCTTGGTCATGCGGGAGCCTCGAGCACCA
131 GTGCT-GGAGCCTCGGACACTATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCA
*
63859434 TCGACTCCTTCGTGCTTGGATGTCCGGGAACCTCGGACACCATCGGAAACCTAGGCCCTTGGTAG
195 TCGACACCTTCGTGCTTGGATGTCCGGGAACCTCGGACACCATCGG-AACCTAGGCCCTTGGT-G
* *
63859499 TACGAGAGCCTTGGGCACCATCGATAAACTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATC
258 TACGAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCA-GAGCCTCGGGCACCATC
* *
63859564 GGCAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGCCACCATCGTCACCTAGGTGCTTGGATGTA
322 GGCAAAATTGGCCATTGGTCGTGCGAGAGCCTCGGCCACCATC-TCACCTAGGTGCTTGGATGTG
* * * *
63859629 CGGGAGCCACAGACGCCATCGGCAAACTAGGCCATTGGTCTTGTGGGAGCCTCGGGCACCATCGG
386 CGGGAGCCACAGACACCATCGGCAAACTAGGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATCGG
* * *
63859694 CACCTAGGTGCTTC-GATGTGCGGGAGCCTCGGGAACCGTCGGCAATCTAGGCC
451 CACAT-GGTGC-TCGGATGTGCGGGAGCCTC-GGCACCATCGGCAA-CTAGGCC
63859747 CTTGGTCGTG
Statistics
Matches: 1086, Mismatches: 157, Indels: 60
0.83 0.12 0.05
Matches are distributed among these distances:
764 3 0.00
765 114 0.10
766 869 0.80
767 98 0.09
768 2 0.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (759 bp):
GATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCATGGTCTTGCAGGAGCCTCGGGCAC
CATCGGCACATGTGTGCTCGGATGTGCGGGAGCCTCAAGCACCATCGACACCTCAGTGCTATGAT
GTGCTGGAGCCTCGGACACTATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCAT
CGACACCTTCGTGCTTGGATGTCCGGGAACCTCGGACACCATCGGAACCTAGGCCCTTGGTGTAC
GAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCAGAGCCTCGGGCACCATCGGCA
AAATTGGCCATTGGTCGTGCGAGAGCCTCGGCCACCATCTCACCTAGGTGCTTGGATGTGCGGGA
GCCACAGACACCATCGGCAAACTAGGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATCGGCACAT
GGTGCTCGGATGTGCGGGAGCCTCGGCACCATCGGCAACTAGGCCTATGATCGTACCGGAGCCTC
GGACACTATCGGCAACCTAGGCCCTAGGTCATGCGAAAGCCTCGAGCACCATCGACACATGTGCG
CTCGGATGTCCGGGAACCTCGGACACCATCGGTACCTCAGTGCTATGATGTCCGAGAGCCTCGGA
CACCATCAGCAAACTAAGCCGTTGGTCGTACCAAAGCCTCGGGCACCATCGGCAAAATGGGCCAT
TGGTCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGACCTTG
Found at i:63859926 original size:212 final size:212
Alignment explanation
Indices: 63859674--63860074 Score: 547
Period size: 212 Copynumber: 1.9 Consensus size: 212
63859664 TGGTCTTGTG
** *
63859674 GGAGCCTCGGGCACCATCGGCACCTAGGTGCTTCGATGTGCGGGAGCCTCGGGA-ACCGTCGGCA
1 GGAGCCTCAAGCACCATCGGCACCTAGGTGCTTCGATGTGCCGGAGCCTC-GGACACCGTCGGCA
* * * * ** *
63859738 ATCTAGGCCCTTGGTCGTGCTAGAGCCT-GTGGCACCATCGGTACCTAGGTGCTTGGATGTACGG
65 ACCTAGGCCCTTGGTCATGCGAGAGCCTCG-AGCACCATCGACACCTACGTGCTTGGATGTACGG
* * * * *
63859802 GAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCATCGACAC
129 GAACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTAGGGCACCATCGACAC
63859867 ATGCGTGCTCGGTTGTGCA
194 ATGCGTGCTCGGTTGTGCA
* * * *
63859886 GGAGCCTCAAGCACCATCGGTACCTCGGTGCTAT-GATGTGCCTGAGCCTCGGACACTGTCGGCA
1 GGAGCCTCAAGCACCATCGGCACCTAGGTGCT-TCGATGTGCCGGAGCCTCGGACACCGTCGGCA
* * *
63859950 ACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGGG
65 ACCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCGACACCTACGTGCTTGGATGTACGGG
*
63860015 AACCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTAGGGCACCATCG
130 AACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTAGGGCACCATCG
63860075 GCAAACTGAG
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
211 3 0.02
212 158 0.97
213 2 0.01
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (212 bp):
GGAGCCTCAAGCACCATCGGCACCTAGGTGCTTCGATGTGCCGGAGCCTCGGACACCGTCGGCAA
CCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCACCATCGACACCTACGTGCTTGGATGTACGGGA
ACCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTAGGGCACCATCGACACAT
GCGTGCTCGGTTGTGCA
Found at i:63863439 original size:298 final size:297
Alignment explanation
Indices: 63853723--63864885 Score: 3888
Period size: 298 Copynumber: 37.4 Consensus size: 297
63853713 CGAGAGCCTC
* * * * * * *
63853723 GGTGCTTGGATGTGCGGGAGCCAC-AGACACTATCGGCAAACTAGGCCCTTGGTCTTGTGGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* ** * **
63853787 CTCGGGCACCATCGGCACCTAGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
65 CTCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
* * * ** *
63853852 GCCCATGGTCGTGCTAGAGCCTGTGGCACCATCGGC-ACCTAGGTGCTTGGATGTACGGGAGCCT
130 GCCCTTGGTCGTGCGAGAGCCT-CGGCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAGCCT
* * * * * * *
63853916 CAGACACCATCGGCAAACTAGGCCTTTGG-TCTTGCGGGAGCCTCGGGCACCAGCGG-AACATGT
194 CGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAA-A-CT
* * * * * * *
63853979 ATG--ATCGGTTGTGCAAGAGCCTCAAGCACCATCGGTACCTC
256 AGGCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * * *
63854020 GATGCTAT-GATGTGTC-GGAGCCTCGGACACTATTGGCAACCTAGGCCCTTGGTCATGC-AGGA
1 GGTGCT-TGGATGTG-CGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGA-GA
* ** ** * * * * **
63854082 GCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGGGAACCTCGGACACGATTGGCAACCT
63 GCCTCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAAT
* * * * *
63854147 AGGCCCTTGGTCGTGCGAGAGCCTCGGTCACCATCGGCAAACTAAGCCTTTGG-TCGTGCGGGAG
128 AGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGAT-GTACGAGAG
* * * * * *
63854211 CGTCGGACACCGTCGGC-AACATTGGCCCTTGG-TCGTGCGAGAGCCTTAG-CAACCATC-G-AC
191 CCTCGGACACCATCGGCAAAC-TAGGCCCTTGGAT-GTGCGGGAGCCTCAGAC-ACCATCGGCAA
*** * * * * *
63854271 ACTTAGGTGGTTGGATGTGCGGGAGCCTTGGCCACTATTGGCACCTA
253 AC-TAGGCCCTTGGTTGTGCGAGAGCCTCGG-CACCATCGGCACCTA
* * * * ** ** * * * * *
63854318 GGTGCTTGGATGTGTGAGAGCCTCGGACACCACCGGTAAAGTAGACCCTCGGTCTTGCGGGAGCG
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCC
*** * * * **
63854383 TCGAGCACCATCGGCACCCT-GATTCTTCGATGTGCGAGAGCCTCGGGCACCATCGGTAACCTAG
66 TCGAGCACCATCGGCA-CCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
* * ** * *
63854447 GCCCTTGGTCGTGCTAGAGCCTCGGGCACCATCGGC-ACCAAGGTGCTTGGATGTGCGGGAGCCT
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAGCCT
* * * * * * * * *
63854511 CGAACACCATCGACAAACTAGGCCTTTGG-TCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAG
194 CGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAG
* * * *
63854575 GCCCTAGGTCGTGCGAAAGCCTCGGGCACCATCGGCACAT-
258 GCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* ** * ** * ** ** * *
63854615 GTGCGCTCAGATGTCCGGGAGCCTCGGGCACAATCG-GTACCTCA-GTACTATGAT-GTGCGGGA
1 G-GTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAACCT-AGGCCCT-TGGTCGTGCGAGA
* * * **
63854677 GCCTCG-GACACTATCAGCAACCTACGCCCTTGG-TCGTGCGAAAGCCTCGGGCACCATCGGCAA
63 GCCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAA
* * * * * * *
63854740 AATAAGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGACCTTGGATGTGCGGG
125 AATAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGATGTACGAG
* * * * * * * * *
63854804 TGCCTCAGACACCAT-GGACAAACTAGGCCCGT-CATCTTGCAGGAGCCTCGGGCACCATCAGCA
189 AGCCTCGGACACCATCGG-CAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCA
* ** * * * *
63854867 CA-T-GTGTGCTCGGATGTGCGGGAGCCTCAGGCACCATCGGCACCTC
252 AACTAG-GCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* ** * * * * * *
63854913 GGTGCTAT-GATGTGCCGGAGCCTCCG-ACACTGTCGGCAACGTAGGCTCTTGGTCATCCGGGAG
1 GGTGCT-TGGATGTGCGGGAGCCT-CGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAG
** ** ** * * **
63854976 CCTCGAGCACCATCAACACCTTCGTGCTTGGATGTCCGGGAACCTCGGGCACCATCGGCAACCTA
64 CCTCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATA
* * * ** *
63855041 GGCCCTTGGTCGTGCTAGAGCCTGTGGCACCATCGG-TACCTAGGTGCTTGGATGTACGGGAGCC
129 GGCCCTTGGTCGTGCGAGAGCCT-CGGCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAGCC
* * * * * *
63855105 TCAGACACCATCGGCAAACTAGGCCTTTGG-TCTTGCGGGAGCCTCGGGCACCATCGGCACA-T-
193 TCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTA
** * * * *
63855167 GTGTGCTCGGTTGTGC-AGGAGCCTCAAGCACCATCGGTACCTC
257 G-GCCCTTGGTTGTGCGA-GAGCCTC-GGCACCATCGGCACCTA
* * * * * *
63855210 GGTGCTAT-GATGTGCCGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCATGCGGGAGC
1 GGTGCT-TGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* ** ** * * * **
63855274 CTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGGGAACCTCAGACACCATCGGCAACCTAG
65 CTCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
* * * * * * *
63855339 GCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCGGTAAACTAAGCCTTTGG-TCGTGCGGGAGCC
130 GCCCTTGGTCGTGCGAGAGCC-TCGGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGAGAGCC
* * * * * * * *
63855403 TCGGGCACCGTCGGC-AACATTGGCCCTTGG-TCGTGCGAGAGCCTTAGCCACCAT-TG-ACACT
193 TCGGACACCATCGGCAAAC-TAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAAC-
** * * * * *
63855464 TAGGTGCTTGGATGTACGGGAGCCTCGGCCACTATTGGCACCTA
255 TAGGCCCTTGGTTGTGCGAGAGCCTCGG-CACCATCGGCACCTA
* * * * * ** * * *
63855508 GGTGCTTGGATGTGTGAGAGCCTCGGACACCACCGGCAAAGTAGACCCTTGGTCTTGCGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCC
*** * * * **
63855573 TCGAGCACCATCGGCACCCT-GATTCTTCGATGTGCGAGAGCCTCGGGCACCATCGGCGACCTAG
66 TCGAGCACCATCGGCA-CCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
* * *** * *
63855637 GCCCTTGGTCGTGCTAGAGCCTCGGGCACCATCGGC-ACCAAGTTACTTGGATGTGCGGGAGCCT
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAGCCT
* ** ** * * * ** *** *
63855701 CGGGCACTGTCAACTACCTAGGCCCTAGG-TCGTGCGAAAGCCTC-GAGCACCATTACCACA-T-
194 CGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGA-CACCATCGGCAAACTA
* * * * * *
63855762 GTGCGCTCGGATGTCCGGGAGCCTCGGGCACCATCGGTACCTCA
257 G-GCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGCACCT-A
* * * *
63855806 -GTGCTAT-GATGTGCGGGAGGCTCGGACACTATC-AGCAACCTAGGCCCTTGGTCGTGCGAAAG
1 GGTGCT-TGGATGTGCGGGAGCCTCGAACACCATCGA-CAACCTAGGCCCTTGGTCGTGCGAGAG
* * ** * * ** * **
63855868 CCTTGGGCACCATCGGCAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCTGC-ACCT
64 CCTCGAGCACCATCGGC-ACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAAT
** * * * * * * * * *
63855932 AGGATCTTGGAT-GTGCGGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCG-TCTTACGGGA
128 AGGCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGAGA
* * ** * * *
63855995 GCCTCGGGCACCATCGGCACA-T-GTGTGCTCGGATGTGCGGGAGCCTCAGGCACCATCGGC-AC
190 GCCTCGGACACCATCGGCAAACTAG-GCCCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAA
* ** * ** * *
63856057 CTCGGTGCTAT-GATGTGTCG-GAGCCTCGGACACTGTCGGGAACGTA
254 CTAGGCCCT-TGGTTGTG-CGAGAGCCTCGG-CACCATC-GGCACCTA
* * * ** ** *
63856103 GGCT-CTTGG-TCATGCGGGAGCCTTGAGCACCATCGAC-ACCTTCGTGCTTGGAT-GT-CTGGG
1 GG-TGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGG-TCGTGC-GAG
* * * * * *
63856163 AACCTCG-GATACCATCGGTAACCTAGGCCCTTGG-TCGTCCGAGAGCCTCAGGCACCATCGGCA
62 AGCCTCGAG-CACCATCGG-CACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
* * * * * ** * * *
63856226 AACTAAGCACTTGGTCGTGAGGGAGCCTCGGGCACCATCGGCAAAATTGGCCCATGG-TCGTGCG
124 AAATAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACG
* * ** * *
63856290 AGAGCCTCGGCCACCATCGGC-ACCTAGGAGCTTGGATGCGCGGGAGCCTTAGACACCATCGGCA
187 AGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGATGTGCGGGAGCCTCAGACACCATCGGCA
* * ** *
63856354 AACTAGGCCCGTGGTCT-TGCAAGAGCCTCGGGCACCATCGATACAT-
252 AACTAGGCCCTTGGT-TGTGCGAGAGCCTC-GGCACCATCGGCACCTA
*
63856400 GTGTGCTTGGATGTGCGGGAGCCTC-AAGCACCATCGAC-ACCTCAGTG--CTATGAT-GTGCCG
1 G-GTGCTTGGATGTGCGGGAGCCTCGAA-CACCATCGACAACCT-AG-GCCCT-TGGTCGTG-CG
** * * * *
63856460 -GAGCCTCG-GACACTGTCAGCAACCTAGGCCCTTGG-TCATGCGGGAGCCTCGAGCACCATCGA
60 AGAGCCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGG
*** * * * *
63856522 CACCTTCGTG--CTTGGAT-GTTCGAGAACCTCGGACACCATCGGTAACCTAGGCCCTTGG-TCG
122 CAAAATAG-GCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGAT-G
** * * * * *
63856583 TGTGAGAGCCTCGGACACCATCGGCAAACTAAGCCTTTAG-TCGTGCGGGAGCCTCAGGCACCGT
183 TACGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCAT
* * * *
63856647 CGGCAAAATTGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTA
247 CGGCAAACTAGGCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGG-CACCTA
*** ** ** * * * ** *
63856700 GACCCTTGG-TCGTGCTAGAGCCTCGGGCACCATGGGC-ACCAAGGTGCTTGGAT-GTGCGGGAG
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGG-TCGTGCGAGAG
* * * * * * * **
63856762 CCTCGGGCACCATCGACAAACTAGGCCTTTGG-TCTTGCGGGAGCCTCGGGCACTATCGGCTACC
64 CCTCGAGCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAA
* * * * ** ** * * *
63856826 TAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGAC-TCCTTCGTGCTTGGATGTGCGGGAA
127 TAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAG
* * * * ** * *
63856890 CCTCGGACACCATTGGCAACCTAGGCCCTTAG-TCGTGCGAGAGCCTTGGGCACCATCGGTAAAC
191 CCTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAAC
* *
63856954 TAAGCCCTTGGTCGTGC-AGGAGCCTCGGGCACCATCGGCACAATTAGCCCTTGGTCGTGCGAGA
255 TAGGCCCTTGGTTGTGCGA-GAGCCTC-GGCACCATCGG--C----A---C-----C-T-----A
* * * * *
63857018 GCCTCGGTGCTTGGATGTGCGGGAGCCAC-AGACACCATCGGCAAACTAGGCCCTTGGTCTTGTG
1 -----GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGACAACCTAGGCCCTTGGTCGTGCG
* * * ** * *
63857082 GGAGCCTCGGGCACCATCGGCACCTGGGTGCTTCGATGTGCGGAAGCCTCGGGCACCATCGGCAA
60 AGAGCCTCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAA
** * * * ** *
63857147 CCTTGGCCCTTGGTCGTGCTAGAGCCTGTGGCACCATCGGC-ACCTAGGTGCTTGGATGTACGGG
125 AATAGGCCCTTGGTCGTGCGAGAGCCT-CGGCACCATCGGCAACCTAGGCCCTTGGATGTACGAG
* * * * * *
63857211 AGCCTCAGACACCATCGGCAAACTAGG-CCTTTG-TGTTGCGGGAGCCTCGGGCACCAGCGGCAC
189 AGCCTCGGACACCATCGGCAAACTAGGCCCTTGGATG-TGCGGGAGCCTCAGACACCATCGGCAA
** * * * *
63857274 A-T-GTGTGCTCGGTTGTGC-AGGAGCCTCAAGCACCATCGGTACCTC
253 ACTAG-GCCCTTGGTTGTGCGA-GAGCCTC-GGCACCATCGGCACCTA
* * * * * *
63857319 GATGCTAT-GATGTGCCGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCATGCGAGAGC
1 GGTGCT-TGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* ** ** * * **
63857383 CTCGAGCA-CATCGACACCTTCGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAG
65 CTCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
* * * * * * *
63857447 GCCCTTGGTCGTACGAGAGCCTCGGGCACCATTGGCAAACTAAGCCTTTGG-TCGTGCGGGAGCC
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGAGAGCC
* * * * * * * *
63857511 TCGGGCACCGTCGGC-AACATTGGCCCTTGG-TCGTGCGAGAGTCTTAGCCACCATC-G-ACACT
193 TCGGACACCATCGGCAAAC-TAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAAC-
*** * * * * *
63857572 TAGGTGGTTGGATGTGCGGGAGCCTCGACCACTATTGGCACCTA
255 TAGGCCCTTGGTTGTGCGAGAGCCTCG-GCACCATCGGCACCTA
* * * ** ** * * *
63857616 GGTGCTTGGATGTGTGAGAGCCTC-AGACACCACCGGTAAAGTAGACCCTTGGTC-TTCGGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* ** *** * * ** **
63857679 CTCGAGCACTATCGGCACCCCGATTCTTCGATGTGCGAGAGCCTTAGGCACCATCGGCAACCTAG
65 CTCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
* * * ** * *
63857744 GCCCTTGGTCCTGCTAGAGCCTCGGGCACCATCGGC-ACCAAGGTGCTTGGATGTGCGGGAGCCT
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAGCCT
* * * * * * * * *
63857808 CGAACACCATCGACAAACTAGGCCTTTGG-TCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAG
194 CGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTAG
* * * *
63857872 GCCCTAGGTCGTGCGAAAGCCTCGAGCACCATCGGCACAT-
258 GCCCTTGGTTGTGCGAGAGCCTCG-GCACCATCGGCACCTA
* * * ** ** * *
63857912 GTGCGCTCGGATGTCCGGGAGCCTCGGGCACCATCG-GTACCTCAGTG--CTATGAT-GTGCGGG
1 G-GTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAACCT-AG-GCCCT-TGGTCGTGCGAG
* * * ***
63857973 AGGCTCG-GACACTATCAGCAACCTAGGCCCTTGG-TCGTGCTAAAGCCTCGGGCACCATCGGCA
62 AGCCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
* * * ** ** * *
63858036 AAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCTAC-ACCTAGGATCTTGGATGTGCGG
124 AAATAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGATGTACGA
* * * * * * * *
63858100 GTGCCTCAGACACCATCGACAAACTAGGCCCGTCG-TCTTGCGGGAGCCTCGGGCACCATCGGCA
188 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCA
* ** * *
63858164 CA-T-GTGTGCTCGGATGTGCGAGAGCCTCAGGCACCATCGGCACCTCA
252 AACTAG-GCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGCACCT-A
* * * ** ** ** * * *
63858211 -GTGCTAT-GATGTACCGGAGCCTCGGACACTGTCGGGAATGTAGGCTCTTGGTCATGCGGGAGC
1 GGTGCT-TGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* ** ** * * * * **
63858274 CTCGAGCACCATCGACACCTTCGTGCTTGGATGTCCGGGAACCTCGGACACCATCGGTAACCTAG
65 CTCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
* * * * * * *
63858339 GCCCTTGGTCGTCCGAGAGCCTCAGGCACCATCGGTAAACTAAGCACTTGG-TCGTGCGGGAGCC
130 GCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGAGAGCC
* * * * * * *
63858403 TCGGGCACCATCGGCAAAATTGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTA
193 TCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACTA
** * * * * *
63858466 GGAGCTTGGATGCGCGGGAGCCTCAGACACCATCGGCAAACTA
257 GGCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
** * * * ** * * ** * *
63858509 GGCCCGTGG-TCTTGCAGGAGCCTCGGGCACCATCGA-TACAT-GTGTGCTCGGAT-GTGCGGGA
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAG-GCCCTTGG-TCGTGCGAGA
* * * * ** * *
63858570 GCCTCAAGCACCATCGACACCTCAGTG--CTAT-GATGTGCTGGAGCCTCGGACACTGTCAGTAA
63 GCCTCGAGCACCATCGGCACCT-AG-GCCCT-TGGATGTGCGGGAGCCTCGGGCACCATCGGCAA
** * * * ** ** * *
63858632 CCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGAC-ACCTTCGTGCTTGGATGTGCGGG
125 AATAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGATGTACGAG
* * * * * * *
63858696 AACCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTCCGAGAGCCTCGGGCACCATCGGTAA
189 AGCCTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAA
* * * * ** *
63858760 ACTAAGCCCTTGGTCGTGCGGGAGCGTCGGGCACCATCGGCAAAATT
253 ACTAGGCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
* * * ** * ** *
63858807 GG-CCTTTGG-TCGTGCGAGAGCGTCGGCCACCATCGGC-ACCTAGGTGCTTGGATC-TG-TAGG
1 GGTGC-TTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGG-TCGTGCGA-G
* * * * *
63858867 AGCCACG-GACACCATCGGCAAACTAGGCCCTTAG-TCTTGCGGGAGCCTCAGGCACCATCGGCA
62 AGCCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCA
** ** * * * * * * *
63858930 TCA-AGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAAACTAGGCCTTTGG-TCTTGC
124 AAATAGGCCCTTGG-TCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGAT-GTAC
* * * * * * * ** ** *
63858992 GGGAGCCTTGGGCACTATCGGCTACCTAGGCCCTAGG-TCGTGCGAAAGCCTTGGGCACCATCGG
186 GAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGG
* * * * ** * *
63859056 CACA-T-GTGCGCTCGGATGTTTGGGAGCCTCGGGCACCATCGGTACCTCA
250 CAAACTAG-GCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGCACCT-A
* * * * * *
63859105 -GTGCTAT-GATGTGCGGGAGCCTCGGACACTATC-AGCAACCTAGGCCGTTGGTCGTACCAAAG
1 GGTGCT-TGGATGTGCGGGAGCCTCGAACACCATCGA-CAACCTAGGCCCTTGGTCGTGCGAGAG
* * ** * * * ** **
63859167 CCTCGGGCACCATCGGTAAAGTGGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC-ACCT
64 CCTCGAGCACCATCGG-CACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAAT
* * * * * * * * * * *
63859231 AGGACCTT-GTATGCGCGGGAGCCTCAGACACCATCGGCAAACTAGGTCCATGG-TCTTGCGGGA
128 AGGCCCTTGGT-CGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGAGA
* * ** * * *
63859294 GCCTCGGGCACCATCGGC--ACTTGTGTGCTCGGATGTGTGGGAGCCTCA-AGCACCATCGAC-A
190 GCCTCGGACACCATCGGCAAACTAG-GCCCTTGGATGTGCGGGAGCCTCAGA-CACCATCGGCAA
* * ** * *
63859355 CCTCGGTGCTAT-GATGTGTCG-GAGCCTCGGACACTATCGGCAACCTA
253 ACTAGGCCCT-TGGTTGTG-CGAGAGCCTCGG-CACCATCGGC-ACCTA
* * * * ** ** * * *
63859402 GGCGCTTGG-TCATGCGGGAGCCTCGAGCACCATCGAC-TCCTTCGTGCTTGGAT-GTCCGGGAA
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGG-TCGTGCGAGAG
* * * * **
63859464 CCTCG-GACACCATCGGAAACCTAGGCCCTTGG-TAGTACGAGAGCCTTGGGCACCATCGATAAA
64 CCTCGAG-CACCATCGG-CACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
* * ** * *
63859527 CTAAGCCCTTGGTCGTGC-AGGAGCCTCGGGCACCATCGGCAAAATTGGCCCTTGG-TCGTGCGA
126 ATAGGCCCTTGGTCGTGCGA-GAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGA
* * * ** * * *
63859590 GAGCCTCGGCCACCATCGTC-ACCTAGGTGCTTGGATGTACGGGAGCCACAGACGCCATCGGCAA
188 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAA
*
63859654 ACTAGGCCATTGGTCTTGTG-G-GAGCCTCGGGCACCATCGGCACCTA
253 ACTAGGCCCTTGG--TTGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * * *
63859700 GGTGCTTCGATGTGCGGGAGCCTCGGGA-ACCGTCGGCAATCTAGGCCCTTGGTCGTGCTAGAGC
1 GGTGCTTGGATGTGCGGGAGCCTC-GAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* * ** * * * *
63859764 CT-GTGGCACCATCGGTACCTAGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCAAACTA
65 CTCG-AGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATA
* * * * * ** * * *
63859828 GGCCTTTGGTCTTGCGGGAGCCTCGGGCACCATCGAC-ACAT-GCGTGCTCGGTTGTGC-AGGAG
129 GGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAG-GCCCTTGGATGTACGA-GAG
* * * * ** ** * ** *
63859890 CCTC-AAGCACCATCGG-TACCTCGGTGCTAT-GATGTGCCTGAGCCTCGGACACTGTCGGCAAC
191 CCTCGGA-CACCATCGGCAAACTAGGCCCT-TGGATGTGCGGGAGCCTCAGACACCATCGGCAAA
** * * *
63859952 CTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGACACCTT
254 CTAGGCCCTTGGTTGTGCGAGAGCCTCG-GCACCATCGGCACCTA
* * *
63859997 CGTGCTTGGATGTGCGGGAACCTC-AGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* * * * * * * *
63860061 CTAGGGCACCATCGGCAAACT-GAGCCTTTGG-TCATGCAGGAGCCTCGAGCACCATCGGCAACA
65 CTCGAGCACCATCGGC-ACCTAG-GCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAA
* * * * *** * *
63860124 TTGGCCCTTGGTCGTGCGAGAGCATCAGCCACCATCGAC-ACCTAGGTGGTTGGATGTGCGGGAG
127 TAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAG
* * * * * * *** * * * * *
63860188 CCTCGGCCACTAT-TGCCACCTAAGTGTTTGGATCTGCGAGAGCCTCGGACACCACCGGCAAAGT
191 CCTCGGACACCATCGGCAAACTAGGCCCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACT
* * * *
63860252 AGACCATTGGTCT-TGCGGGAGCCTCGAGCACCATCGGTACCCT-
256 AGGCCCTTGGT-TGTGCGAGAGCCTCG-GCACCATCGGCA-CCTA
* * * * * * ** * *
63860295 GGTTCTTCGATGTGCGTGAGCCTC-AGGCACCATCGGC-ACCAAGGTGCTTGGAT-GTACGGGAG
1 GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGACAACCTAGGCCCTTGG-TCGTGCGAGAG
* * * * * * *
63860357 CCTCGAACACCATCGACAAACTAGGCCTTTGG-TCTTGCGGGAGCCTCGGGCACTATCGGC-ACA
64 CCTCGAGCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAA
* * * * * * *
63860420 T-GTGCGCTCGGAT-GTCCGGGAGCCTCGGGCACCATTGG-TACCTCAGTG--CTAT-GATGTCC
127 TAG-GCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGGCAACCT-AG-GCCCT-TGGATGTAC
* * * * * ** * *
63860479 GGGAGCCTCGGACACTATCAGCAACCTGGGCCCTTGG-TCGTGCGAAAGCCTCGGGCACCATCGG
186 GAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGG
* * *
63860543 CAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCACCTA
250 CAAACTAGGCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * * * * * *
63860592 GGAGCTTGGATGCGCGGGTGCCTC-AGACACCATCGACAAACTAGGCCCGTCGTCTTGCGGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* ** ** * * **
63860656 CTC-AGGCACCATCGGCACAT-GTGTGCTCAGATGTGCGAGAGCCTCAGGCACCATCGGC-ACCT
65 CTCGA-GCACCATCGGCACCTAG-GCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAAT
* ** * ** * *
63860718 TGGTGCTATGAT-GTGTCGA-AGCCTCGGACACTGTCGGCAACGTAGGCCCTTGGTCATG--CGG
128 AGGCCCT-TGGTCGTG-CGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGG--ATGTACGA
* * ** ** * * * *
63860779 GAGCCTC-GAGCACCATCGAC-ACCTTCGTTCTTGGATGTCCGGGAACCTCGGACACCATCGGTA
188 GAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGGATGTGCGGGAGCCTCAGACACCATCGGCA
* * *
63860842 ACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCAAACTA
252 AACTAGGCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
* ** * ** * ** * * *
63860890 AGCCCTTGG-TCGTGTGGGAGCCTCGGGCACCATCGGCAAAATAAGCCCTTGGCCGTGTGAGAGC
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
** ** * * * *
63860954 CTCG-GCTACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCGACAGACACCATCGACAAACTA
65 CTCGAGC-ACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATA
* ** * * *
63861018 GGCCCTTGGTCTTGC-AGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTCGATGTGCGGGAGC
129 GGCCCTTGGTCGTGCGA-GAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAGC
* * * *** ** * *
63861081 CTCGGGCACCATCGGCAACCTAGGCCCTT-GATCGTTCTAAAGCCTGGGGCACCATCGGC-ACCT
192 CTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACT
* ** * * * *
63861144 CGGTGCTTGGATGTACGGGAGCCTCAGACACCATCGGCACACTA
256 AGGCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGCAC-CTA
* * ** * * *
63861188 GG-CCTTTGG-TCTTGCGGGAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGCGAAAG
1 GGTGC-TTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAG
* * * ** * ** * **
63861251 CCTCGGGCACCATCGGCACAT-GTGCGCTCAGATGTCCGGGAGCCTCGTACACTATCGGCAACCT
64 CCTCGAGCACCATCGGCACCTAG-GCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAAT
* * * * * *
63861315 AGGCCATTGGTCGTACCG-GAGCCTCAAGCACCATCGACAACCTTGGCCCTTGG-TCGTGCGAGA
128 AGGCCCTTGGTCGT-GCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGAGA
* * * * * *
63861378 GCCTTAGG-CACCATCGGCAAACTAAGCCCTTGG-TCGTGCGGGAGCCTCGGGCACTATCGACAA
190 GCC-TCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAA
* *
63861441 GA-TAGGCCCTTGGTCGTGCGAGAGCCTTGGCCACCATCGGCACCTA
253 -ACTAGGCCCTTGGTTGTGCGAGAGCCTCGG-CACCATCGGCACCTA
** * * * * *
63861487 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGGAAACTAGGCTCTCGGTCTTGCGGGAGCC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCC
* * * ** * * * **
63861552 TCGGGCACCATAGGCACCTCGGTGCTTCGATGTGCTGGAGCCTTGGGCACCATCGGC-ACCTAGG
66 TCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG
* * * * * * * * *
63861616 TGCTTTGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCTTTGG-TCTTGCGGGAGCC
131 -CCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGAT-GTACGAGAGCC
* * * * ** * * * *
63861679 TC-GAGCACTATTGGCTACCTAGGCCCTTGG-TCGTGCGAAAGCCTCGGGCACCATTGGCACA-T
193 TCGGA-CACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACT
** * * * * * * *
63861741 -GTGCTATCGGATGTCCAAGAGCCTCGGGATCTATCGGCACCTC
256 AG-GCCCTTGGTTGTGCGAGAGCCTCGGCA-CCATCGGCACCTA
* * * * *
63861784 GGTGCTAT-AATGTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGCCGTGCCG-GAG
1 GGTGCT-TGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTG-CGAGAG
* * * *
63861847 CCTCGAGCACCATCGACAACCTTGGCCCTTTG-TCGTGCGAGAGCCTCGGGCACCAAT-GGCAAA
64 CCTCGAGCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACC-ATCGGCAAA
* * * * * ** *
63861910 CTAAGCCCTTGGTCGTACG-GAAGCCTCGGGCACTATCGACAAAATAGGCCCTTGG-TCGTGCGA
126 ATAGGCCCTTGGTCGTGCGAG-AGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGA
* * * ** *
63861973 GAGCCTTGGCCACCATCGGC-ACCTAGGTGCTTGGATGTGCGGGA-CCGTTCA-ACACCATCGAC
188 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGATGTGCGGGAGCC--TCAGACACCATCGGC
* * * * * * *
63862035 AACCTTGGCCCTTGGTCGTGCGGGAGCCTCGAACACCATTGGCAACCTT
251 AAACTAGGCCCTTGGTTGTGCGAGAGCCTCG-GCACCATCGGC-ACCTA
** * ** * * ** *
63862084 GGCCCTTGG-TCGTGCGAGAGCCTCGGGCTCCATCGGCAAAATAGGCCCTTGGTCGTGAGAGAGC
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
** ** * * *
63862148 CTCG-GCCACCATAAGCACCTAGGTGCTTAGATGTGCGGGAGCCTCGGACACCATCGGCAAACTA
65 CTCGAG-CACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATA
* * * * ** * *
63862212 GGCCCTTGGTCCTAC-AGGAGCCTTGGGCACCATTGGCAAAATAGGCCCTTGG-TCGTGCAAGAG
129 GGCCCTTGGTCGTGCGA-GAGCC-TCGGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGAGAG
* * * ** * *
63862275 CCTCGGGCACCATCGG-TACCTAGGAGCTTGGATGTGCGGGAGCCTCAGAAACCATCGGTAAACT
191 CCTCGGACACCATCGGCAAACTAGGCCCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACT
* * * * *
63862339 AGGCCCGTGGTAT-TGCGGGAGCCTCAGACACCATCGGTACAT-
256 AGGCCCTTGGT-TGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* ** * * * * ** *
63862381 GTGCGCTCAGATGT-CTGGGAACCTC-AGCCACCATCGGC-ACCTCGGTGCTGTGAT-GTGCG-G
1 G-GTGCTTGGATGTGC-GGGAGCCTCGA-ACACCATCGACAACCTAGGCCCT-TGGTCGTGCGAG
** * * * * *
63862441 CAGCCTCG-GACACTGTCGACAACCTAGGCCCTTAG-TCGTGCGGGAACCTCGAGCACCATCGAC
62 -AGCCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGC
*** * * * *
63862504 ACCTTCGTG--CTTGGAT-GTGCGGGAACCTCGGACACCATCGGCAACCGAGGCCCTTGGTCATG
123 AAAATAG-GCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGG--ATG
* * * * * * * *
63862566 --CGAGAGCCTCGGGCACCTTCGGTAAACTAAGCCCTTGG-TCCTGCGGGAGCCTCGGGCATCAT
183 TACGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCAT
* * * * * * *
63862628 CGCCAAAATTGGCCCTTGGTCGTGC-AGGAGCCTTGACCACCATCGACACCTA
247 CGGCAAACTAGGCCCTTGGTTGTGCGA-GAGCCTCG-GCACCATCGGCACCTA
* * * * * *
63862680 GGTGCTTGGATGTGCGGGAGCCTC-AGTCACCATCGGCAAACTAGGCCATTGGTCTTGCGGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGA-ACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* **
63862744 CTCG-GCACCATCGGCACCTCAGTG--CTTCGATGTGCGGGAGCCTCGGGCACCATCGGCAACCT
65 CTCGAGCACCATCGGCACCT-AG-GCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAAT
* * * ** * *
63862806 AGGCCCTTGGTCGTGCTAGACCCTCGGGCACCATCGGC-ACTTAGGTGCTTGGATGTGCGGGAGC
128 AGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAGC
* * * * * * *
63862870 CTCGGACACTATCGGCAAACTAGGCCTTTGG-TCTTGCGGGAGCCTCGGGCACCATCGGCTACCT
192 CTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAACT
* * ** *
63862934 AGGCCCTTGGTCGTGCGAAAGCCTCAGGCACCATTAGCACAT-
256 AGGCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGCACCTA
* * * ** * *** *
63862976 GTTCGCTCGGATGTTCGGGAGCCTCGGGCACCATC-AGC-ACCTCGGTGTTATGAT-GTGCGAGA
1 GGT-GCTTGGATGTGCGGGAGCCTCGAACACCATCGA-CAACCTAGGCCCT-TGGTCGTGCGAGA
* ** * *
63863038 GCCTC-AGACACTATCGGCAACCTAGGCCCTTGG-TCGTGCCAGAGCCTCGAGCACCATCGACAA
63 GCCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAA
** * * * * *
63863101 CCTTGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGCAA
125 AATAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGA
* * * * * * *
63863165 GAGCCTCAGG-CACCATCGGTAAAATAGGCCATTGGTTGTGCGAGAGCCTCGGCCACCATCGGC-
188 GAGCCTC-GGACACCATCGGCAAACTAGGCCCTTGGATGTGCGGGAGCCTCAGACACCATCGGCA
* ** * * * * *
63863228 ACCTAGGTGCTTGGATGTGCGGGACCCTCGAACACCATCAGCAACCTTA
252 AACTAGGCCCTTGGTTGTGCGAGAGCCTCG-GCACCATCGGC-ACC-TA
** * * * *
63863277 -GCCCTTGG-TCGTGCGGGAGCCTCGAAAACCATTGGCAACCTTGGCCCTTGGTCGTGCGAGAGC
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGC
* * * ** * **
63863340 CTCGGGCTCCATCGGTAAAATAGGCCCTTGG-TCGTGCGAGA-CCTC-GGCTACCATCGGC-ATT
65 CTCGAGCACCATCGG-CACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGC-ACCATCGGCAAAA
** * * * * *
63863401 TAGGTGCTTGGAT-GTGTGGGAGCCTCGGACACCATCGGCAAACTGGGCCCTTGGATGTGC-AGG
127 TAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGATGTACGA-G
* *
63863464 AGCCTCAGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCAGGCACCATCGGC-A
189 AGCCTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAA
* * ** * * * ** **
63863527 CCTCGGTGCTAT-GATGTGCGGGAGCCTCAGACACTGTCGATAACCTA
253 ACTAGGCCCT-TGGTTGTGCGAGAGCCTC-GGCACCATCG-GCACCTA
** * * * ** * *
63863574 GGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGAC-ACATTGGTGCTTGGAT-GTGCGGGAA
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGG-TCGTGCGAGAG
* * * * * * * * *
63863636 CCTCGTGCACCATCGGTAACCTAGGCCCTTGG-TCGTACGTGAGCGTTGGGCACCAACGACAAAC
64 CCTCGAGCACCATCGG-CACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAA
* * * ** * *
63863700 TAAGCCCTTGGCCGTACGAGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGATGTGCGGGAG
127 TAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGATGTACGAGAG
* * * * * * *
63863764 CCTCAGACACCATCGGCAAACTAGGCCCTTGG-TCTTACAGGAGCCTCGGGCACCATCGGC-ACC
191 CCTCGGACACCATCGGCAAACTAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAAAC
* ** * * * *
63863827 TCGGTGCTTTGATGTGCGGGAGCCTCGGGCACCATCAGCAACCTA
255 TAGGCCCTTGGTTGTGCGAGAGCCTC-GGCACCATCGGC-ACCTA
** ** ** * ** * *
63863872 GGCCCTTGG-TCGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGTG
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGG-TCGTGCGAGAG
* * * * * *
63863934 CCTCG-GACACCATCGGCAAACTAGGCCTTTGG-TCTTGCGGGAGCCTCGAGCACCATCGGCTAC
64 CCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** * * * * * *
63863997 CTAGGCCCTTGGTCGTATGAAAGCCTCAAGCACCATCGGC-A--TATGTGCGCTCGGATGTTCGG
126 ATAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTA-G-GCCCTTGGATGTACGA
* * * ** * *
63864059 GAGCCTCGGGCACCATCGGC-ACCTCGGTGCTAT-GATGTGCGGGAGCCTCGGACACTATCGGCA
188 GAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGGATGTGCGGGAGCCTCAGACACCATCGGCA
* * * *
63864122 ACCTAGGCCCTTGGTTGTGCCAGAGCCTCGAGCACCATCGACAACCTT
252 AACTAGGCCCTTGGTTGTGCGAGAGCCTCG-GCACCATCGGC-ACCTA
** * * ** * * * *
63864170 GGCCCTTGG-TCGTGTGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTAGTCGTGCG-GAAG
1 GGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAG-AG
* * ** * *** * **
63864233 CCTCGGGCACCATTGGCAAAATAGGCCTTTGG-TCGTGCAAAAGCCTCGGCCACCATCGGC-ACC
64 CCTCGAGCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAAA
** * * * * * * * *
63864296 TAGGTGCTTGGAT-GTACGGGACCCTCGAACACCATCGGTAACCTTGGCCCTTGG-TCGTGCGGG
127 TAGGCCCTTGG-TCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGAT-GTACGAG
* * * * * * * *
63864359 AGCCTCGAACACCATTGGCAACCTTA-GCCCTTGG-TCGTGCGAGAGCCTCGGGCTCCATCGACA
189 AGCCTCGGACACCATCGGCAAAC-TAGGCCCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCA
* * *
63864422 AAATAGGCCCTTGGTCGTGTGAGA-CCTCGGCTACCATCGGCACCTA
252 AACTAGGCCCTTGGTTGTGCGAGAGCCTCGGC-ACCATCGGCACCTA
* * * * * *
63864468 GGTGCTTAGATGTGCGGGAGCCTCGGACACCATCGGCAAACTGGGCCCTTGGAT-GTG-TAGGAG
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGG-TCGTGCGA-GAG
* * *
63864531 CCTC-AGACACCATCGGCAAACTAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCATCGGC-AC
64 CCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAA
* * ** * * * ** ** * *
63864593 CTCGGTGCTATGAT-GTGCGGGAGCCTCAGACACTGTCGATAACCTAGGCCCTTGG-TCGTGCGG
126 ATAGGCCCT-TGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGAT-GTACGA
* * * *** * *
63864656 GAGCCTC-GAGCACCATCGAC-ACCTTGATGCTTGGATGTGCGGGAACCTC-GTGCACCATCGGC
188 GAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGGATGTGCGGGAGCCTCAG-ACACCATCGGC
* ** * * *
63864718 AACCTAGGCCCTTGGTCATACGAGAGCCTTGGGCACCATCGGCAAACTA
251 AAACTAGGCCCTTGGTTGTGCGAGAGCC-TCGGCACCATCGGC-ACCTA
* ** ** * ** * * ** * *
63864767 TGCCCTTGGCCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAAGTGCTTGGAT-GTACGGGAGC
1 GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGG-TCGTGCGAGAGC
* * * ** *
63864830 CTCGGGCACCATCGGCACCT-TGCTGGCTCAGATGTGCGGGAGCCTCGGGCAGCATC
65 CTCGAGCACCATCGGCACCTAGGC--CCTTGGATGTGCGGGAGCCTCGGGCACCATC
63864886 AGAACCTCGG
Statistics
Matches: 8406, Mismatches: 1930, Indels: 1059
0.74 0.17 0.09
Matches are distributed among these distances:
295 93 0.01
296 314 0.04
297 2552 0.30
298 3719 0.44
299 1227 0.15
300 255 0.03
301 8 0.00
304 1 0.00
306 1 0.00
307 2 0.00
312 2 0.00
313 1 0.00
315 1 0.00
318 1 0.00
321 31 0.00
322 29 0.00
323 133 0.02
324 36 0.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (297 bp):
GGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCC
TCGAGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG
CCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGATGTACGAGAGCCTCG
GACACCATCGGCAAACTAGGCCCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCC
CTTGGTTGTGCGAGAGCCTCGGCACCATCGGCACCTA
Done.