Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 193 of 210
Found at i:63864869 original size:213 final size:211
Alignment explanation
Indices: 63857710--63864936 Score: 2235
Period size: 213 Copynumber: 34.0 Consensus size: 211
63857700 GATTCTTCGA
* * * **
63857710 TGTGCGAGAGCCTTAGG-CACCATCGGCAACCTAGGCCCTTGGTCCTGCTAGAGCCTCGGGCACC
1 TGTGCGAGAGCC-TCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACC
* ** * * *
63857774 ATCGGCACCAAGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAAAC-T--AGGCCTTTG
64 ATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGG-CTCT-
* * * * ** * **
63857836 GTCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGG-TCGTGCGAAAGCCTC-GAGC
126 GTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGA-C
* * *
63857899 ACCATCGGC-ACAT-GTGCGCTCGG
188 ACCATCGGCAACCTAG-GCCCTTGG
* * * * * * *
63857922 ATGTCCGGGAGCCTCGGGCACCATCGG-TACCTCAGTG--CTATGAT-GTGCGGGAGGCTCGGAC
1 -TGTGCGAGAGCCTCGGACACCATCGGCAAACT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGG-C
* * ** *** ***
63857983 ACTATCAGCAACCTAGGCCCTTGG-TCGTGCTAAAGCCTCGGGCACCATCGGCAAAAT--AGGC-
61 ACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCT
* ** * ** * * *
63858044 CATTGGTTGTGCTAGAGCCTCGGGCACCATCTACACCTAGGAT-CTTGGATGTGCGGGTGCCTCA
124 C--T-GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TGCTTGGATGTGCGGGAGCCTCG
* * * *
63858108 GACACCATCGACAAACTAGGCCCGTCG
185 GACACCATCGGCAACCTAGGCCCTTGG
* * * * ** * *
63858135 TCTTGCGGGAGCCTCGGGCACCATCGGCACA-T-GTGTGCTCGGAT-GTGCGAGAGCCTCAGGCA
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAG-GCCCTTGG-TCGTGCGGGAGCCTC-GGCA
* * * ** * * *
63858197 CCATCGGCACCTCA-GTGCTAT-GATGTACCGGAGCCTCGGACACTGTCGGGA--ATGTAGGCTC
62 CCATCGGCACCT-AGGTGCT-TGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTC
* * * * *
63858258 TTGGTCATGCGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTCCGGGAACCTCGGAC
125 -T-GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAC
*
63858323 ACCATCGGTAACCTAGGCCCTTGG
188 ACCATCGGCAACCTAGGCCCTTGG
* * * *
63858347 TCGTCCGAGAGCCTCAGG-CACCATCGGTAAACTAAGCACTTGGTCGTGCGGGAGCCTCGGGCAC
1 T-GTGCGAGAGCCTC-GGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCAC
** * ** * * * *
63858411 CATCGGCAAAATTGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGA-GCT-T
63 CATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTCT
* * * ** * * *
63858473 GGAT-GCGCGGGAGCCTC-AGACACCATCGGCAAACTAGGCCCGTGG-TCTTGCAGGAGCCTCGG
126 -G-TCGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
* * ** *
63858535 GCACCATC-G-ATACAT-GTGTGCTCGG
186 ACACCATCGGCA-ACCTAG-GCCCTTGG
* * * * * *
63858560 ATGTGCGGGAGCCTC-AAGCACCATCGAC-ACCTCAGTG--CTATGAT-GTGCTGGAGCCTCGGA
1 -TGTGCGAGAGCCTCGGA-CACCATCGGCAAACT-AG-GCCCT-TGGTCGTGCGGGAGCCTCGG-
** ** ** * * *
63858620 CACTGTCAGTAACCTAGGCCCTTGG-TCATGCGGGAGCCTCGAGCACCATCGACACCTT-C-GTG
60 CACCATC-GGCACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAG-G
* * ** * *
63858682 CT-TGGAT-GTGCGGGAACCTCG-GACACCATCGGCAACCTAGGCCCTTGG-TCGTCCGAGAGCC
122 CTCT-G-TCGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCC
* * * *
63858743 TCGGGCACCATCGGTAAACTAAGCCCTTGG
182 TCGGACACCATCGGCAACCTAGGCCCTTGG
* * * * * * * *
63858773 TCGTGCGGGAGCGTCGGGCACCATCGGCAAAATTGGCCTTTGGTCGTGCGAGAGCGTCGGCCACC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACC
* ** * * * *
63858838 ATCGGCACCTAGGTGCTTGGATCTGTAGGAGCCACGGACACCATCGGCAAAC-T--AGGCCCTTA
64 ATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCTC-T-
* * ** *
63858900 GTCTTGCGGGAGCCTC-AGGCACCATCGGCATCAAGGTGCTTGGATGTGCGGGAGCCTCGAACAC
126 GTCGTGCGGGAGCCTCGA-GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAC
* * *
63858964 CATCGACAAACTAGGCCTTTGG
190 CATCGGCAACCTAGGCCCTTGG
* * * * * * * * ** *
63858986 TCTTGCGGGAGCCTTGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGCGAAAGCCTTGGGCACC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCC-TCGGCACC
* * * ** * *
63859051 ATCGGCACAT-GTGCGCTCGGATGTTTGGGAGCCTCGGGCACCATCGGTACC-T-CAGTGCTATG
64 ATCGGCACCTAG-GTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAG-GCTCTG
* * * * * *** *
63859113 AT-GTGCGGGAGCCTCG-GACACTATCAGCAACCTAGG-CCGTTGG-TCGTACCAAAGCCTCGGG
127 -TCGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGC-TTGGAT-GTGCGGGAGCCTCGGA
* ** * *
63859174 CACCATCGGTAAAGTGGGCCATTGG
187 CACCATCGGCAACCTAGGCCCTTGG
* * * * * * *
63859199 TTGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGACCTT-GTATGCGCGGGAGCCTCAGACAC
1 -TGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGT-CGTGCGGGAGCCTC-GGCAC
* * * * *
63859262 CATCGGCAAACTAGGTCCATGG-TCTTGCGGGAGCCTCGGGCACCATCGGCA-CTTG-TGTGCTC
63 CATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAG-GCTC
* * * * *
63859324 GGAT-GTGTGGGAGCCTCAAGCACCATCGACACCTCGGTGCTAT-GATGTGTC-GGAGCCTCGGA
125 TG-TCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT-TGGATGTG-CGGGAGCCTCGGA
* *
63859386 CACTATCGGCAACCTAGGCGCTTGG
187 CACCATCGGCAACCTAGGCCCTTGG
* * * ** ** ** * *
63859411 TCATGCGGGAGCCTC-GAGCACCATCGAC-TCCTTCGTGCTTGGAT-GTCCGGGAACCTCGGACA
1 T-GTGCGAGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CA
* ** * * * ** * * *
63859473 CCATCGGAAACCTAGGCCCTTGG-TAGTACGAGAGCCTTGGGCACCATCGATAAAC-T--AAGCC
62 CCATCGG-CACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCG-GCACCTTGCAGGCT
* * ** ** *
63859534 CTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATTGGCCCTTGG-TCGTGCGAGAGCCTCG
124 C-T-GTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
* * **
63859598 GCCACCATCGTC-ACCTAGGTGCTTGG
185 GACACCATCGGCAACCTAGGCCCTTGG
* * * * * * * *
63859624 ATGTACGGGAGCCACAGACGCCATCGGCAAACTAGGCCATTGGTCTTGTGGGAGCCTCGGGCACC
1 -TGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACC
* * * * *
63859689 ATCGGCACCTAGGTGCTTCGATGTGCGGGAGCCTCGGGAACCGTCGGCA--AT-CTAGGCCCTTG
64 ATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGC-AGGCTC-T-
** * * * * *
63859751 GTCGTGCTAGAGCCT-GTGGCACCATCGGTACCTAGGTGCTTGGATGTACGGGAGCCTCAGACAC
126 GTCGTGCGGGAGCCTCG-AGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAC
* *
63859815 CATCGGCAAACTAGGCCTTTGG
190 CATCGGCAACCTAGGCCCTTGG
* * * * * ** * * * *
63859837 TCTTGCGGGAGCCTCGGGCACCATCGACACA-T-GCGTGCTCGGTTGTGCAGGAGCCTCAAGCAC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAG-GCCCTTGGTCGTGCGGGAGCCTC-GGCAC
* * ** * ** *
63859900 CATCGGTACCTCGGTGCTAT-GATGTGCCTGAGCCTCGGACACTGTCGGCAACC-T--AGGCCCT
63 CATCGGCACCTAGGTGCT-TGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCTC-
* * * * *
63859961 TGGTCATGCGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTGCGGGAACCTCAGACA
125 T-GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACA
63860026 CCATCGGCAACCTAGGCCCTTGG
189 CCATCGGCAACCTAGGCCCTTGG
* * * * *
63860049 TCGTGCGAGAGCCTAGGGCACCATCGGCAAACT-GAGCCTTTGGTCATGCAGGAGCCTCGAGCAC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAG-GCCCTTGGTCGTGCGGGAGCCTCG-GCAC
* * ** * * * * * * **
63860113 CATCGGCAACATTGGCCCTTGG-TCGTGCGAGAGCATCAGCCACCATCGACACCTAGGTGG-T-T
63 CATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTCT
* * * ** * * *
63860175 GGAT-GTGCGGGAGCCTCG-GCCACTATTGCCACCTAAGTGTTTGGATCTGCGAGAGCCTCGGAC
126 -G-TCGTGCGGGAGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAC
* ** * *
63860238 ACCACCGGCAAAGTAGACCATTGG
188 ACCATCGGCAACCTAGGCCCTTGG
* * * ** ** * *
63860262 TCTTGCGGGAGCCTC-GAGCACCATCGGTACCCT-GGTTCTTCGAT-GTGCGTGAGCCTCAGGCA
1 T-GTGCGAGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTT-GGTCGTGCGGGAGCCTC-GGCA
* * ** * * *
63860324 CCATCGGCACCAAGGTGCTTGGATGTACGGGAGCCTCGAACACCATCGACAAAC-T--AGGCCTT
62 CCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGG-CTC
* * * * * * * *
63860386 TGGTCTTGCGGGAGCCTCGGGCACTATCGGCA-CATGTGCGCTCGGATGTCCGGGAGCCTCGGGC
125 T-GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTG-GTGCTTGGATGTGCGGGAGCCTCGGAC
* * *
63860450 ACCATTGG-TACCTCAGTG--CTATGA
188 ACCATCGGCAACCT-AG-GCCCT-TGG
* * * * * * **
63860474 TGTCCGGGAGCCTCGGACACTATCAGCAACCTGGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCA
1 TGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCA
** * * ** * *
63860539 TCGGCAAAATAGG-CCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCACCTAGGA-GCT-TGG
65 TCGGC-ACCTAGGTGC-TTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTCT-G
* * * * * ** * * *
63860601 AT-GCGCGGGTGCCTC-AGACACCATCGACAAACTAGGCCCGTCG-TCTTGCGGGAGCCTCAGG-
127 -TCGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-GGA
* ** * *
63860662 CACCATCGGC-ACAT-GTGTGCTCAGA
187 CACCATCGGCAACCTAG-GCCCT-TGG
* * ** * *
63860687 TGTGCGAGAGCCTCAGG-CACCATCGGC-ACCTTGGTGCTATGAT-GTGTC-GAAGCCTCGGACA
1 TGTGCGAGAGCCTC-GGACACCATCGGCAAACTAGGCCCT-TGGTCGTG-CGGGAGCCTCGG-CA
** * ** * * * *
63860748 CTGTCGGCAACGTAGGCCCTTGG-TCATGCGGGAGCCTCGAGCACCATCGACACCTT-C--GTTC
62 CCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTC
* * * * ** *
63860809 TTGGAT-GTCCGGGAACCTCG-GACACCATCGGTAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC
125 -T-G-TCGTGCGGGAGCCTCGAG-CACCATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTC
* *
63860871 AGG-CACCATCGGCAAACTAAGCCCTTGG
184 -GGACACCATCGGCAACCTAGGCCCTTGG
* * * * * * * *
63860899 TCGTGTGGGAGCCTCGGGCACCATCGGCAAAATAAGCCCTTGGCCGTGTGAGAGCCTCGGCTACC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGC-ACC
** * * * * *
63860964 ATCGGCACCTAGGTGCTTGGATGTGCGGGAGCGACAGACACCATCGACAAAC-T--AGGCCCTTG
64 ATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCTC-T-
* * * * * *
63861026 GTCTTGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTCGATGTGCGGGAGCCTCGGGCACC
126 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACC
*
63861091 ATCGGCAACCTAGGCCCTTGA
191 ATCGGCAACCTAGGCCCTTGG
* * * * * * * ** * *
63861112 TCGTTCTAAAGCCTGGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTACGGGAGCCTCAGACAC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTC-GGCAC
* * *
63861175 CATCGGCACACTAGG-CCTTTGG-TCTTGCGGGAGCCTCGGGCACCATCGGCTACC-T--AGGCC
63 CATCGGCAC-CTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCT
** * * * ** * *
63861235 CTTGGTCGTGCGAAAGCCTCGGGCACCATCGGCA-CATGTGCGCTCAGATGTCCGGGAGCCTCGT
124 C-T-GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTG-GTGCTTGGATGTGCGGGAGCCTCGG
* *
63861299 ACACTATCGGCAACCTAGGCCATTGG
186 ACACCATCGGCAACCTAGGCCCTTGG
* * * * * * *
63861325 TCGTACCG-GAGCCTC-AAGCACCATCGACAACCTTGGCCCTTGGTCGTGCGAGAGCCTTAGGCA
1 T-GT-GCGAGAGCCTCGGA-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCC-TCGGCA
* * ** * * *** *
63861388 CCATCGGCAAACTAAGCCCTTGG-TCGTGCGGGAGCCTCGGGCACTATCGACAAGAT--AGGCCC
62 CCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTC
* * * *
63861450 TTGGTCGTGCGAGAGCCTTG-GCCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGAA
125 -T-GTCGTGCGGGAGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
* * * *
63861514 CACCATCGGGAAACTAGGCTCTCGG
187 CACCATCGGCAACCTAGGCCCTTGG
* * * * * * ** * * *
63861539 TCTTGCGGGAGCCTCGGGCACCATAGGC-ACCTCGGTGCTTCGAT-GTGCTGGAGCCTTGGGCAC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTT-GGTCGTGCGGGAGCC-TCGGCAC
* * * *
63861602 CATCGGCACCTAGGTGCTTTGATGTGCGGGAGCCTCGGACACCATCGGCAAAC-T--AGGCCTTT
63 CATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGG-CTCT
* * * * ** ** *
63861664 GGTCTTGCGGGAGCCTCGAGCACTATTGGCTACCTAGGCCCTTGG-TCGTGCGAAAGCCTCGGGC
126 -GTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGAC
* * ** *
63861728 ACCATTGGC-ACAT-GTGCTATCGG
188 ACCATCGGCAACCTAG-GCCCTTGG
* * * * * * ** **
63861751 ATGTCCAAGAGCCTCGGGA-TCTATCGGC-ACCTCGGTGCTATAAT-GTGCGGGAGCCTCGGACA
1 -TGTGCGAGAGCCTC-GGACACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGG-CA
* ** ** * * * *
63861813 CTATCGGCAACCTAGGCCCTTGGCCGTGCCGGAGCCTCGAGCACCATCGACAACCTTG--GCCCT
62 CCATCGGC-ACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAG-GCT
* * * * ** ** * *
63861876 TTGTCGTGCGAGAGCCTCGGGCACCAAT-GGCAAACTAAGCCCTTGG-TCGTACGGAAGCCTCGG
124 CTGTCGTGCGGGAGCCTCGAGCACC-ATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
* * * **
63861939 GCACTATCGACAAAATAGGCCCTTGG
186 ACACCATCGGCAACCTAGGCCCTTGG
* * * ** **
63861965 TCGTGCGAGAGCCTTGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA-CCGTTCAACA
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCC--TCGGCA
* * ** ** * *
63862027 CCATCGACAACCTTGGCCCTTGG-TCGTGCGGGAGCCTCGAACACCATTGGCAACCTT---GGCC
62 CCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCT
* * * ** * ** * *
63862088 CTTGGTCGTGCGAGAGCCTCGGGCTCCATCGGCAAAATAGGCCCTTGG-TCGTGAGAGAGCCTCG
124 C-T-GTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
* ** ** *
63862152 GCCACCATAAGC-ACCTAGGTGCTTAGA
185 GACACCATCGGCAACCTAGGCCCTT-GG
* * * * *
63862179 TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCCTACAGGAGCCTTGGGCACCA
1 TGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCC-TCGGCACCA
* ** ** ** * * *
63862244 TTGGCAAAATAGGCCCTTGG-TCGTGCAAGAGCCTCGGGCACCATCGGTACCTAGGA-GCT-TGG
65 TCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTCT-G
* * * * ** * *
63862306 AT-GTGCGGGAGCCTC-AGAAACCATCGGTAAACTAGGCCCGTGGTAT-TGCGGGAGCCTCAGAC
127 -TCGTGCGGGAGCCTCGAG-CACCATCGG-CACCTTGGTGCTTGG-ATGTGCGGGAGCCTCGGAC
* * * * *
63862368 ACCATCGG-TACAT-GTGCGCTCAGA
188 ACCATCGGCAACCTAG-GCCCT-TGG
* * * * * * ** * *
63862392 TGT-CTGGGAACCTCAGCCACCATCGGC-ACCTCGGTGCTGTGAT-GTGCGGCAGCCTCGGACAC
1 TGTGC-GAGAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGG-CAC
** * ** * * * *
63862454 TGTCGACAACCTAGGCCCTTAG-TCGTGCGGGAACCTCGAGCACCATCGACACCTT-C-GTGCT-
63 CATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAG-GCTC
* ** ** * *
63862515 TGGAT-GTGCGGGAACCTCG-GACACCATCGGCAACCGAGGCCCTTGG-TCATGCGAGAGCCTCG
125 T-G-TCGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
* * * * *
63862577 GGCACCTTCGGTAAACTAAGCCCTTGG
185 GACACCATCGGCAACCTAGGCCCTTGG
* * * * * * * * * *
63862604 TCCTGCGGGAGCCTCGGGCATCATCGCCAAAATTGGCCCTTGGTCGTGCAGGAGCCTTGACCACC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACC
* * * *
63862669 ATCGACACCTAGGTGCTTGGATGTGCGGGAGCCTCAGTCACCATCGGCAAAC-T--AGGC-CATT
64 ATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCTC--T
* ** * *
63862730 GGTCTTGCGGGAGCCTCG-GCACCATCGGCACCTCAGTGCTTCGATGTGCGGGAGCCTCGGGCAC
126 -GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAC
63862794 CATCGGCAACCTAGGCCCTTGG
190 CATCGGCAACCTAGGCCCTTGG
* * * **
63862816 TCGTGCTAGACCCTCGGGCACCATCGGC--ACTTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAAC-TAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CA
* * * *
63862878 CTATCGGCAAACTAGG-CCTTTGG-TCTTGCGGGAGCCTCGGGCACCATCGGCTACC-T--AGGC
62 CCATCGGC-ACCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGC
* ** ** * * * *
63862938 CCTTGGTCGTGCGAAAGCCTC-AGGCACCATTAGCA-CATGTTCGCTCGGATGTTCGGGAGCCTC
123 TC-T-GTCGTGCGGGAGCCTCGA-GCACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTC
* * * *** *
63863001 GGGCACCATCAGC-ACCTCGGTGTTATGA
184 GGACACCATCGGCAACCTAGGCCCT-TGG
* * * **
63863029 TGTGCGAGAGCCTCAGACACTATCGGCAACCTAGGCCCTTGGTCGTGCCAGAGCCTCGAGCACCA
1 TGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCA
* * ** * * * *
63863094 TCGACAACCTTGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAAAC-T--AAGCCCTT
65 TCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCTC-T
** * ** * * * * *
63863155 GGTCGTGCAAGAGCCTC-AGGCACCATCGGTAAAATAGG-CCATTGGTTGTGCGAGAGCCTCGGC
126 -GTCGTGCGGGAGCCTCGA-GCACCATCGG-CACCTTGGTGC-TTGGATGTGCGGGAGCCTCGGA
**
63863218 CACCATCGGC-ACCTAGGTGCTTGG
187 CACCATCGGCAACCTAGGCCCTTGG
* * * * * **
63863242 ATGTGCGGGACCCTCGAACACCATCAGCAACCTTA-GCCCTTGGTCGTGCGGGAGCCTCGAAAAC
1 -TGTGCGAGAGCCTCGGACACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCG-GCAC
* * ** * * * *** *
63863306 CATTGGCAACCTTGGCCCTTGG-TCGTGCGAGAGCCTCGGGCTCCATCGGTAAAAT--AGGCCCT
63 CATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTC-
* * *
63863368 TGGTCGTGCGAGA-CCTCG-GCTACCATCGGCA-TTTAGGTGCTTGGATGTGTGGGAGCCTCGGA
125 T-GTCGTGCGGGAGCCTCGAGC-ACCATCGGCACCTT-GGTGCTTGGATGTGCGGGAGCCTCGGA
* *
63863430 CACCATCGGCAAACTGGGCCCTTGG
187 CACCATCGGCAACCTAGGCCCTTGG
*
63863455 ATGTGC-AGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCAC
1 -TGTGCGA-GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCAC
* * * ** ** *
63863519 CATCGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCAGACACTGTCGATAACC-T--AGGCCCT
63 CATCGGCACCTAGGTGCT-TGGATGTGCGGGAGCCTCGGGCACCATCG-GCACCTTGCAGGCTC-
* * *
63863580 TGGTCGTGCGGGAGCCTCGAGCACCATCGACACATTGGTGCTTGGATGTGCGGGAACCTCGTG-C
125 T-GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCG-GAC
*
63863644 ACCATCGGTAACCTAGGCCCTTGG
188 ACCATCGGCAACCTAGGCCCTTGG
* * * * * * * * * * *
63863668 TCGTACGTGAGCGTTGGGCACCAACGACAAACTAAGCCCTTGGCCGTACGAGAGCCTCGGCCACC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACC
* * * *
63863733 ATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAAAC-T--AGGCCCTTG
64 ATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCTC-T-
* * * * * * *
63863795 GTCTTACAGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTTGATGTGCGGGAGCCTCGGGCACC
126 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACC
*
63863860 ATCAGCAACCTAGGCCCTTGG
191 ATCGGCAACCTAGGCCCTTGG
* * * ** *
63863881 TCGTGCTAGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGTGCCTCGGACAC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CAC
* * * * *
63863944 CATCGGCAAACTAGG-CCTTTGG-TCTTGCGGGAGCCTCGAGCACCATCGGCTACC-T--AGGCC
63 CATCGGC-ACCTAGGTGC-TTGGAT-GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCT
** ** * * * *
63864004 CTTGGTCGTATGAAAGCCTCAAGCACCATCGGCA--TATGTGCGCTCGGATGTTCGGGAGCCTCG
124 C-T-GTCGTGCGGGAGCCTCGAGCACCATCGGCACCT-TG-GTGCTTGGATGTGCGGGAGCCTCG
* * ** *
63864067 GGCACCATCGGC-ACCTCGGTGCTATGA
185 GACACCATCGGCAACCTAGGCCCT-TGG
* * * * **
63864094 TGTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTTGTGCCAGAGCCTCGAGCACCA
1 TGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCA
* * ** * * * * *
63864159 TCGACAACCTTGGCCCTTGG-TCGTGTGAGAGCCTCGGGCACCATCGGCAAAC-T--AAGCCCTT
65 TCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCAGGCTC-T
* * * ** * * *** *
63864220 AGTCGTGCGGAAGCCTCGGGCACCATTGGCAAAATAGG-CCTTTGG-TCGTGCAAAAGCCTCGGC
126 -GTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGC-TTGGAT-GTGCGGGAGCCTCGGA
**
63864283 CACCATCGGC-ACCTAGGTGCTTGG
187 CACCATCGGCAACCTAGGCCCTTGG
* * * * * * * *
63864307 ATGTACGGGACCCTCGAACACCATCGGTAACCTTGGCCCTTGGTCGTGCGGGAGCCTCGAACACC
1 -TGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACC
* ** * * * *** *
63864372 ATTGGCAACCTTA-GCCCTTGG-TCGTGCGAGAGCCTCGGGCTCCATCGACAAAAT--AGGCCCT
64 ATCGGC-ACC-TAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTC-
* * * *
63864433 TGGTCGTGTGAGA-CCTCG-GCTACCATCGGCACCTAGGTGCTTAGATGTGCGGGAGCCTCGGAC
125 T-GTCGTGCGGGAGCCTCGAGC-ACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAC
* *
63864496 ACCATCGGCAAACTGGGCCCTTGG
188 ACCATCGGCAACCTAGGCCCTTGG
* * *
63864520 ATGTG-TAGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGCAC
1 -TGTGCGA-GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCAC
* * * ** ** *
63864584 CATCGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCAGACACTGTCGATAACC-T--AGGCCCT
63 CATCGGCACCTAGGTGCT-TGGATGTGCGGGAGCCTCGGGCACCATCG-GCACCTTGCAGGCTC-
* * *
63864645 TGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGATGCTTGGATGTGCGGGAACCTCGTG-C
125 T-GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCG-GAC
63864709 ACCATCGGCAACCTAGGCCCTTGG
188 ACCATCGGCAACCTAGGCCCTTGG
* * * * * * *
63864733 TCATACGAGAGCCTTGGGCACCATCGGCAAACTATGCCCTTGGCCGTGCGAGAGCCTCGGCCACC
1 T-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACC
* * * *
63864798 ATCGGCACCTAAGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTTGCTGGCTCAGAT
64 ATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTCTG-T
* * * * * *
63864863 -GTGCGGGAGCCTCGGGCAGCATCAGAACCTCGGTGGCTAGGATGTGCGGGAGCCTCGGACACCA
128 CGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGGACACCA
*
63864927 TCGTCAACCT
192 TCGGCAACCT
63864937 TGGTGCTTAG
Statistics
Matches: 5351, Mismatches: 1296, Indels: 733
0.73 0.18 0.10
Matches are distributed among these distances:
209 2 0.00
210 6 0.00
211 126 0.02
212 1626 0.30
213 2516 0.47
214 1039 0.19
215 31 0.01
216 5 0.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (211 bp):
TGTGCGAGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCAT
CGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGCAGGCTCTGTCGT
GCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG
CAACCTAGGCCCTTGG
Found at i:63864873 original size:128 final size:126
Alignment explanation
Indices: 63853781--63864998 Score: 4247
Period size: 128 Copynumber: 88.0 Consensus size: 126
63853771 TTGGTCTTGT
** * *
63853781 GGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTC-GGCACCATCGG
** * * ** * *
63853844 CAACCTAGGCCCATGG-TCGTGCTAGAGCCT-GTGGCACCATCGGCACCTAGGTGCTTGGATGTA
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCG-GGCACCATCGGCACCTAGGTGCTTAGATGTG
63853907 C
126 C
* * * * * * * *
63853908 GGGAGCCTCAGACACCATCGGCAAACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCAGCGGA
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * * * * * ** ** * * *
63853973 ACAT-GTATGATCGGTTGTGCAAGAGCCTCAAGCACCATCGGTACCTCGATGC-TATGATGTGTC
65 ACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTA-GATGTG-C
* * * * *
63854036 -GGAGCCTCGGACACTATTGGCAACCTAGGCCCTTGGTCATGC-AGGAGCCTCGAGCACCATCGA
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCG-GCACCATCGG
** * * * * * ** *
63854099 CACCTTCGTGCTTGGATGTGCGGGAACCTCGGACACGATTGGCAACCTAGGCCCTT-GGTCGTGC
64 CACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * * * * * * *
63854163 GAGAGCCTCGGTCACCATCGGCAAACTAAGCCTTTGGTCGTGCGGGAGCGTCGGACACCGTCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGC
* * ** * * ** * * * *
63854228 AACATTGGCCCTTGG-TCGTGCGAGAGCCT-TAGCAACCATCGACACTTAGGTGGTTGGATGTGC
65 -ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGC-ACCATCGGCACCTAGGTGCTTAGATGTGC
* * * * ** * *
63854291 GGGAGCCTTGGCCACTATTGGC-ACCTAGGTGCTTGGAT-GTGTGAGAGCCTCGGACACCACCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGG
* ** *** * * * * * * * *
63854354 TAAAGTAGACCCTCGG-TCTTGCGGGAGCGTCGAGCACCATCGGCACCCT-GATTCTTCGATGTG
64 -CACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCA-CCTAGGTGCTTAGATGTG
63854417 C
126 C
* * *
63854418 GAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCTAGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * ** * * * * * *
63854483 ACCAAGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAAACTAGG-CCTTTGGTCTTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * * *
63854546 GGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGCGAAAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * ** * * * *
63854611 ACAT-GTGCGCTCAGATGTCCGGGAGCCTCGGGCACAATCGGTACCTCA-GTAC-TATGATGTGC
65 ACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCT-AGGTGCTTA-GATGTGC
* * * * *
63854673 GGGAGCCTCGGACACTATCAGCAACCTACGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
** * * * * ** ** *
63854738 AAAATAAG-CCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCACCTAGGACCTTGGATGTGC
65 -ACCTAGGTGC-TTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* * * * * ** * *
63854801 GGGTGCCTCAGACACCAT-GGACAAACTAGGCCCGTCATCTTGC-AGGAGCCTCGGGCACCATCA
1 GGGAGCCTCGGGCACCATCGG-CAACCTAGGCCCTTGGTCGTGCGA-GAGCCTC-GGCACCATCG
* * * * *
63854864 GCACAT-GTGTGCTCGGATGTGCGGGAGCCTCAGGCACCATCGGCACCTCGGTGC-TATGATGTG
63 GCACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTA-GATGTG
63854927 C
126 C
* * * ** * * * * * **
63854928 CGGAGCCTCCGACACTGTCGGCAACGTAGGCTCTTGGTCATCCGGGAGCCTCGAGCACCATCAAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
** * * ** *
63854993 ACCTTCGTGCTTGGATGTCCGGGAACCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
** * ** * * *
63855056 TAGAGCCT-GTGGCACCATCGG-TACCTAGGTGCTTGGAT-GTACGGGAGCCTCAGACACCATCG
1 GGGAGCCTCG-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCG
* * * * * ** *
63855118 GCAAACTAGG-CCTTTGG-TCTTGCGGGAGCCTCGGGCACCATCGGCACAT-GTGTGCTCGGTTG
63 GC-ACCTAGGTGC-TTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAG-GTGCTTAGATG
63855180 TGC
124 TGC
* ** * * ** * *
63855183 AGGAGCCTCAAGCACCATCGG-TACCTCGGTGCTATGAT-GTGCCG-GAGCCTCGGACACTATCG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTG-CGAGAGCCTCGG-CACCATCG
** * * ** *
63855245 GCAACCTAGGCCCTTGGTCATG--CGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGT
63 GC-ACCTAGGTGCTTGG--ATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGT
63855308 GC
125 GC
* * * *
63855310 GGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCGGT
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCC-TCGGCACCATCGG-
* * * * * * * * ** *
63855375 AAACTAAG-CCTTTGG-TCGTGCGGGAGCCTCGGGCACCGTCGGCAACATTGGCCCTT-GGTCGT
64 CACCTAGGTGC-TTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GT
63855437 GC
125 GC
* ** * * * * ** * * * *
63855439 GAGAGCCTTAGCCACCATTGAC-ACTTAGGTGCTTGGAT-GTACGGGAGCCTCGGCCACTATTGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGG
** * * * ** *** * *
63855502 CACCTAGGTGCTTGGATGTGTGAGAGCCTCGGACACCACCGGCAAAGTAGACCCTT-GGTCTTGC
64 CACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * *** *
63855566 GGGAGCCTCGAGCACCATCGGCACCCT-GATTCTTCGAT-GTGCGAGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTC-GGCACCATCGG
** * ** * * * *
63855629 CGACCTAGGCCCTTGG-TCGTGCTAGAGCCTCGGGCACCATCGGCACCAAGTTACTTGGATGTGC
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
** ** * * * ***
63855693 GGGAGCCTCGGGCACTGTCAACTACCTAGGCCCTAGGTCGTGCGAAAGCCTCGAGCACCATTACC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
* * * * *
63855758 ACAT-GTGCGCTCGGATGTCCGGGAGCCTCGGGCACCATCGGTACCTCA-GTGC-TATGATGTGC
65 ACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCT-AGGTGCTTA-GATGTGC
* * * * * *
63855820 GGGAGGCTCGGACACTATCAGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTTGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCC-TCGGCACCATCGGC
** * * * ** * *
63855885 AAAATAGG-CCATTGGTTGTGCTAGAGCCTCGGGCACCATCTGCACCTAGGAT-CTTGGATGTGC
65 -ACCTAGGTGC-TTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGG-TGCTTAGATGTGC
* * * * * * * * * *
63855948 GGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTCTTACGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * * * *
63856013 ACAT-GTGTGCTCGGATGTGCGGGAGCCTCAGGCACCATCGGCACCTCGGTGC-TATGATGTGTC
65 ACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTA-GATGTG-C
* ** * * * * * * *
63856076 -GGAGCCTCGGACACTGTCGGGAACGTAGGCTCTTGGTCATGCGGGAGCCTTGAGCACCATCGAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
** * ** * ** * *
63856140 ACCTTCGTGCTTGGATGT-CTGGGAACCTCGGATACCATCGGTAACCTAGGCCCTT-GGTCGTCC
65 ACCTAGGTGCTTGGATGTAC-GGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTAGAT-GTGC
* * * * * * *
63856203 GAGAGCCTCAGGCACCATCGGCAAACTAAGCACTTGGTCGTGAGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
** * ** * * * * * * *
63856268 AAAATTGGCCCATGG-TCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGAGCTTGGATGCGC
65 -ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
** * * * * * **
63856331 GGGAGCCTTAGACACCATCGGCAAACTAGGCCCGTGGTCTTGCAAGAGCCTCGGGCACCATCGAT
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * ** *
63856396 ACAT-GTGTGCTTGGATGTGCGGGAGCCTCAAGCACCATCGACACCTCA-GTGC-TATGATGTGC
65 ACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCT-AGGTGCTTA-GATGTGC
* * ** * * * *
63856458 CGGAGCCTCGGACACTGTCAGCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
** * * * * * ** * *
63856523 ACCTTCGTGCTTGGATGTTCGAGAACCTCGGACACCATCGGTAACCTAGGCCCTT-GGTCGTGT
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTAGAT-GTGC
* * * * * * * *
63856586 GAGAGCCTCGGACACCATCGGCAAACTAAGCCTTTAGTCGTGCGGGAGCCTCAGGCACCGTCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
** * ** * * * *** *
63856651 AAAATTGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGACCCTT-GGTCGTG
65 -ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTAGAT-GTG
63856714 C
126 C
** * * ** * *
63856715 TAGAGCCTCGGGCACCATGGGC-ACCAAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGA
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGG
* * * * * ** * *
63856778 CAAACTAGG-CCTTTGG-TCTTGCGGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTT-GGTCA
64 C-ACCTAGGTGC-TTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-G
63856840 TGC
124 TGC
* * * ** ** * * *
63856843 GGGAGCCTCGAGCACCATCGAC-TCCTTCGTGCTTGGAT-GTGCGGGAACCTCGGACACCATTGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGG
** * * * * * * * ** *
63856906 CAACCTAGGCCCTTAG-TCGTGCGAGAGCCTTGGGCACCATCGGTAAACTAAGCCCTT-GGTCGT
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTAGAT-GT
63856969 GC
125 GC
* ** ** *
63856971 AGGAGCCTCGGGCACCATCGGCACAATTA-GCCCTTGGTCGTGCGAGAGCCTCGG-TGC-TTGG-
1 GGGAGCCTCGGGCACCATCGGCA-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGC
* * * * * * *
63857032 A--T--GTGC-GGGA-GCCAC-AGACACCATC-GGCA-AACTAGGC-CCTTGGT-C-T---TGT-
65 ACCTAGGTGCTTGGATG-TACGGGA-GCC-TCGGGCACCA-TCGGCACCTAGGTGCTTAGATGTG
63857081 -
126 C
* ** *
63857081 GGGAGCCTCGGGCACCATCGGC-ACCTGGGTGCTTCGAT-GTGCG-GAAGCCTCGGGCACCATCG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAG-AGCCTC-GGCACCATCG
* ** * ** *
63857143 GCAACCTTGGCCCTTGG-TCGTGCTAGAGCCT-GTGGCACCATCGGCACCTAGGTGCTTGGATGT
63 GC-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCG-GGCACCATCGGCACCTAGGTGCTTAGATGT
*
63857206 AC
125 GC
* * * * * *
63857208 GGGAGCCTCAGACACCATCGGCAAACTAGG-CCTTTGT-GTTGCGGGAGCCTCGGGCACCAGCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG-TGCGAGAGCCTC-GGCACCATCGG
* * * * * ** * * *
63857271 CACAT-GTGTGCTCGGTTGTGCAGGAGCCTCAAGCACCATCGGTACCTCGATGC-TATGATGTGC
64 CACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTA-GATGTGC
* * * * *
63857334 CGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCGAGCA-CATCGAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
** * * * ** * *
63857398 ACCTTCGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTT-GGTCGTAC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * * * * * *
63857461 GAGAGCCTCGGGCACCATTGGCAAACTAAGCCTTTGGTCGTGCGGGAGCCTCGGGCACCGTCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * ** * * * ** * * * * *
63857526 AACATTGGCCCTTGG-TCGTGCGAGAGTCTTAGCCACCATCGACACTTAGGTGGTTGGATGTGC
65 -ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
** * * ** * * *
63857589 GGGAGCCTCGACCACTATTGGC-ACCTAGGTGCTTGGAT-GTGTGAGAGCCTCAGACACCACCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGG
* ** *** * * * * ** * * *
63857652 TAAAGTAGACCCTTGG-TCTTCGGGAGCCTCGAGCACTATCGGCACCCCGATTCTTCGATGTGC
64 -CACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* ** * *
63857715 GAGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCCTGCTAGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * ** * * * * * *
63857780 ACCAAGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAAACTAGG-CCTTTGGTCTTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * * *
63857843 GGGAGCCTCGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGCGAAAGCCTCGAGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
* * * * *
63857908 ACAT-GTGCGCTCGGATGTCCGGGAGCCTCGGGCACCATCGGTACCTCA-GTGC-TATGATGTGC
65 ACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCT-AGGTGCTTA-GATGTGC
* * * * * *
63857970 GGGAGGCTCGGACACTATCAGCAACCTAGGCCCTTGGTCGTGCTAAAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
** * * * ** ** *
63858035 AAAATAGG-CCATTGGTTGTGCTAGAGCCTCGGGCACCATCTACACCTAGGAT-CTTGGATGTGC
65 -ACCTAGGTGC-TTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGG-TGCTTAGATGTGC
* * * * * * * * *
63858098 GGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCGTCTTGCGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * * * * *
63858163 ACAT-GTGTGCTCGGATGTGCGAGAGCCTCAGGCACCATCGGCACCTCA-GTGC-TATGATGTAC
65 ACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCT-AGGTGCTTA-GATGTGC
* * ** * ** * * * *
63858225 CGGAGCCTCGGACACTGTCGGGAATGTAGGCTCTTGGTCATGCGGGAGCCTCGAGCACCATCGAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
** * * * * ** * *
63858290 ACCTTCGTGCTTGGATGTCCGGGAACCTCGGACACCATCGGTAACCTAGGCCCTT-GGTCGTCC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTAGAT-GTGC
* * * * * * *
63858353 GAGAGCCTCAGGCACCATCGGTAAACTAAGCACTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
** * ** * * * * * *
63858418 AAAATTGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGGCACCTAGGAGCTTGGATGCGC
65 -ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* * * * * *
63858481 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCGTGGTCTTGC-AGGAGCCTCGGGCACCATCGA
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTC-GGCACCATCGG
* * * * ** *
63858545 TACAT-GTGTGCTCGGATGTGCGGGAGCCTCAAGCACCATCGACACCTCA-GTGC-TATGATGTG
64 CACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCT-AGGTGCTTA-GATGTG
63858607 C
126 C
* * ** * * * * *
63858608 TGGAGCCTCGGACACTGTCAGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCACCATCGAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
** * * * ** * *
63858673 ACCTTCGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCTAGGCCCTT-GGTCGTCC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * * * * *
63858736 GAGAGCCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCGTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
** * * * * * * * * *
63858801 AAAATTGG-CCTTTGG-TCGTGCGAGAGCGTCGGCCACCATCGGCACCTAGGTGCTTGGATCTGT
65 -ACCTAGGTGC-TTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* * * * * * *
63858864 AGGAGCCACGGACACCATCGGCAAACTAGGCCCTTAGTCTTGCGGGAGCCTCAGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * * ** * * * * * *
63858929 ATCAAGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGACAAACTAGG-CCTTTGGTCTTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * * * * *
63858992 GGGAGCCTTGGGCACTATCGGCTACCTAGGCCCTAGGTCGTGCGAAAGCCTTGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCC-TCGGCACCATCGGC
* * * ** *
63859057 ACAT-GTGCGCTCGGATGTTTGGGAGCCTCGGGCACCATCGGTACCTCA-GTGC-TATGATGTGC
65 ACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCT-AGGTGCTTA-GATGTGC
* * * * * * * *
63859119 GGGAGCCTCGGACACTATCAGCAACCTAGGCCGTTGGTCGTACCAAAGCCTCGGGCACCATCGGT
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * * * ** ** *
63859184 A--AAGTGGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGCACCTAGGACCTT-GTATGCG
65 ACCTAG-GTG-C-TTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAG-ATGTG
63859246 C
126 C
* * * * * * *
63859247 GGGAGCCTCAGACACCATCGGCAAACTAGGTCCATGGTCTTGCGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * ** ** * *
63859312 A-CTTGTGTGCTCGGATGTGTGGGAGCCTCAAGCACCATCGACACCTCGGTGC-TATGATGTGTC
65 ACCTAG-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTA-GATGTG-C
* * * * * *
63859375 -GGAGCCTCGGACACTATCGGCAACCTAGGCGCTTGGTCATGCGGGAGCCTCGAGCACCATCGAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
* ** * * * * ** * *
63859439 TCCTTCGTGCTTGGATGTCCGGGAACCTCGGACACCATCGGAAACCTAGGCCCTT-GGTAGTAC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTAGAT-GTGC
* * ** * *
63859502 GAGAGCCTTGGGCACCATCGATAAACTAAGCCCTTGGTCGTGC-AGGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTC-GGCACCATCGG
** * ** * * * * * *
63859566 CAAAATTGGCCCTTGG-TCGTGCGAGAGCCTCGGCCACCATCGTCACCTAGGTGCTTGGATGTAC
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* * * * * * * * *
63859630 GGGAGCCACAGACGCCATCGGCAAACTAGGCCATTGGTCTTGTGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * * * * ** *
63859695 ACCTAGGTGCTTCGATGTGCGGGAGCCTCGGGAACCGTCGGCAATCTAGGCCCTT-GGTCGTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
** * ** * * *
63859758 TAGAGCCT-GTGGCACCATCGG-TACCTAGGTGCTTGGAT-GTACGGGAGCCTCAGACACCATCG
1 GGGAGCCTCG-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCG
* * * * * * ** *
63859820 GCAAACTAGG-CCTTTGG-TCTTGCGGGAGCCTCGGGCACCATCGACACAT-GCGTGCTCGGTTG
63 GC-ACCTAGGTGC-TTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAG-GTGCTTAGATG
63859882 TGC
124 TGC
* ** * * ** * ** **
63859885 AGGAGCCTCAAGCACCATCGG-TACCTCGGTGCTATGAT-GTGCCTGAGCCTCGGACACTGTCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGG-CACCATCGG
** * * ** *
63859948 CAACCTAGGCCCTTGGTCATG--CGGGAGCCTCGAGCACCATCGACACCTTCGTGCTTGGATGTG
64 C-ACCTAGGTGCTTGG--ATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTG
63860011 C
126 C
* * * *
63860012 GGGAACCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTAGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCT-CGGCACCATCGGC
* * * * * * ** *
63860077 AAACT-GAG-CCTTTGGTCATG--CAGGAGCCTCGAGCACCATCGGCAACATTGGCCCTT-GGTC
65 -ACCTAG-GTGC-TTGG--ATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-
63860137 GTGC
123 GTGC
* * * * * *** * * * *
63860141 GAGAGCATCAGCCACCATCGAC-ACCTAGGTGGTTGGAT-GTGCGGGAGCCTCGGCCACTATTGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGG
* * * * * * * ** ** * *
63860204 CACCTAAGTGTTTGGATCTGCGAGAGCCTCGGACACCACCGGCAAAGTA-GACCATT-GGTCTTG
64 CACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGC-TTAGAT-GTG
63860267 C
126 C
* * * ** * *
63860268 GGGAGCCTCGAGCACCATCGGTACCCT-GGTTCTTCGAT-GTGCGTGAGCCTCAGGCACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTC-GGCACCATCGG
* ** * * * * * *
63860331 CACCAAGGTGCTTGGATGTACGGGAGCCTCGAACACCATCGACAAACTAGG-CCTTTGGTCTTGC
64 CACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * * * * * *
63860395 GGGAGCCTCGGGCACTATCGGC-ACAT-GTGCGCTCGGAT-GTCCGGGAGCCTCGGGCACCATTG
1 GGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCG
* * * * * * ** *
63860457 GTACCTCA-GTGCTAT-GATGTCCGGGAGCCTCGGACACTATCAGCAACCTGGGCCCTT-GGTCG
63 GCACCT-AGGTGCT-TGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-G
63860519 TGC
124 TGC
** ** * * *
63860522 GAAAGCCTCGGGCACCATCGGCAAAATAGGCCATTGGTTGTGCTAGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* ** * * * * * ** * * *
63860587 ACCTAGGAGCTTGGATGCGCGGGTGCCTCAGACACCATCGACAAACTAGGCCCGTCG-TCTTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * ** * *
63860650 GGGAGCCTCAGGCACCATCGGC-ACAT-GTGTGCTCAGAT-GTGCGAGAGCCTCAGGCACCATCG
1 GGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCT-TGGTCGTGCGAGAGCCTC-GGCACCATCG
* * * * ** * ** * *
63860712 GCACCTTGGTGCTAT-GATGTGTC-GAAGCCTCGGACACTGTCGGCAACGTAGGCCCTT-GGTCA
63 GCACCTAGGTGCT-TGGATGT-ACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-G
63860774 TGC
124 TGC
* * ** ** * * *
63860777 GGGAGCCTCGAGCACCATCGAC-ACCTTCGTTCTTGGAT-GTCCGGGAACCTCGGACACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGG
* ** * * * * * ** *
63860840 TAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCAGGCACCATCGGCAAACTAAGCCCTT-GGTCGT
64 -CACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GT
*
63860903 GT
125 GC
** * * *
63860905 GGGAGCCTCGGGCACCATCGGCAAAATAAGCCCTTGGCCGTGTGAGAGCCTCGGCTACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGC-ACCATCGGC
* ** * * * * ** * *
63860970 ACCTAGGTGCTTGGATGTGCGGGAGCGACAGACACCATCGACAAACTAGGCCCTT-GGTCTTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* ** * *
63861033 AGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTC-GGCACCATCGG
** * *** * * * *
63861096 CAACCTAGGCCCTT-GATCGTTCTAAAGCCTGGGGCACCATCGGCACCTCGGTGCTTGGATGTAC
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* * * * *
63861160 GGGAGCCTCAGACACCATCGGC-ACACTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAAC-CTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGG
** * ** * * * *
63861224 CTACCTAGGCCCTTGG-TCGTGCGAAAGCCTCGGGCACCATCGGCACAT-GTGCGCTCAGATGTC
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAG-GTGCTTAGATGTG
63861287 C
126 C
** * * * * *
63861288 GGGAGCCTCGTACACTATCGGCAACCTAGGCCATTGGTCGTACCG-GAGCCTCAAGCACCATCGA
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT-GCGAGAGCCTC-GGCACCATCGG
* ** * * ** * * ** *
63861352 CAACCTTGGCCCTTGG-TCGTGCGAGAGCCTTAGGCACCATCGGCAAACTAAGCCCTT-GGTCGT
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GT
63861415 GC
125 GC
* * ** *
63861417 GGGAGCCTCGGGCACTATCGACAAGATAGGCCCTTGGTCGTGCGAGAGCCTTGGCCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGC
* ** * * * * *
63861482 ACCTAGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGGAAACTA-G-GCTCTCGGTCTTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATC-GGCACCTAGGTGCT-TAGAT-GTGC
* * ** * *
63861545 GGGAGCCTCGGGCACCATAGGC-ACCTCGGTGCTTCGAT-GTGCTG-GAGCCTTGGGCACCATCG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGC-GAGAGCC-TCGGCACCATCG
* * * * * * * *
63861607 GCACCTAGGTGCTTTGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGG-CCTTTGGTCTTG
63 GCACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTG
63861671 C
126 C
* * * * * *
63861672 GGGAGCCTCGAGCACTATTGGCTACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATTGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * ** * *
63861737 A-C-ATGTGCTATCGGATGTCCAAGAGCCTCGGG-ATCTATCGGCACCTCGGTGCTATA-ATGTG
65 ACCTAGGTGCT-T-GGATGTACGGGAGCCTCGGGCA-CCATCGGCACCTAGGTGCT-TAGATGTG
63861798 C
126 C
* * * *
63861799 GGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGCCGTGCCG-GAGCCTCGAGCACCATCGA
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG-CGAGAGCCTCG-GCACCATCGG
* ** * * * * * ** *
63861863 CAACCTTGGCCCTTTG-TCGTGCGAGAGCCTCGGGCACCAAT-GGCAAACTAAGCCCTT-GGTCG
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACC-ATCGGC-ACCTAGGTGCTTAGAT-G
*
63861925 TAC
124 TGC
* * * ** *
63861928 GGAAGCCTCGGGCACTATCGACAAAATAGGCCCTTGGTCGTGCGAGAGCCTTGGCCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGC
* ** * * ** *
63861993 ACCTAGGTGCTTGGATGTGCGGGA-CCGTTC-AACACCATCGACAACCTTGGCCCTT-GGTCGTG
65 ACCTAGGTGCTTGGATGTACGGGAGCC--TCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTG
63862055 C
126 C
** * * *
63862056 GGGAGCCTCGAACACCATTGGCAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGGGCTCCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
** ** * * **
63862121 AAAATAGGCCCTTGG-TCGTGA-GAGAGCCTCGGCCACCATAAGCACCTAGGTGCTTAGATGTGC
65 -ACCTAGGTGCTTGGAT-GT-ACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* * * * * *
63862184 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCCTAC-AGGAGCCTTGGGCACCATTGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCC-TCGGCACCATCGG
** ** * ** * * *
63862248 CAAAATAGGCCCTTGG-TCGTGCAAGAGCCTCGGGCACCATCGGTACCTAGGAGCTTGGATGTGC
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* ** * * * ** * * *
63862312 GGGAGCCTCAGAAACCATCGGTAAACTAGGCCCGTGGTATTGCGGGAGCCTCAGACACCATCGGT
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * ** * * * *
63862377 ACAT-GTGCGCTCAGATGT-CTGGGAACCTCAGCCACCATCGGCACCTCGGTGCTGT-GATGTGC
65 ACCTAG-GTGCTTGGATGTAC-GGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TAGATGTGC
* * ** * * * * *
63862439 GGCAGCCTCGGACACTGTCGACAACCTAGGCCCTTAGTCGTGCGGGAACCTCGAGCACCATCGAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
** * * * * ** * *
63862504 ACCTTCGTGCTTGGATGTGCGGGAACCTCGGACACCATCGGCAACCGAGGCCCTT-GGTCATGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * * * * * * * *
63862567 GAGAGCCTCGGGCACCTTCGGTAAACTAAGCCCTTGGTCCTGCGGGAGCCTCGGGCATCATCGCC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
** * ** * * * ** * *
63862632 AAAATTGGCCCTTGG-TCGTGCAGGAGCCTTGACCACCATCGACACCTAGGTGCTTGGATGTGC
65 -ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* * * * * *
63862695 GGGAGCCTCAGTCACCATCGGCAAACTAGGCCATTGGTCTTGCGGGAGCCTCGGCACCATCGGCA
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCA
* * ** *
63862760 CCTCA-GTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGC
66 CCT-AGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
** * * ** * *
63862822 TAGACCCTCGGGCACCATCGGC-ACTTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACTATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGG
* * * * ** *
63862885 CAAACTAGG-CCTTTGG-TCTTGCGGGAGCCTCGGGCACCATCGGCTACCTAGGCCCTT-GGTCG
64 C-ACCTAGGTGC-TTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-G
63862947 TGC
124 TGC
** * ** * * * * * * *
63862950 GAAAGCCTCAGGCACCATTAGC-ACAT-GTTCGCTCGGAT-GTTCGGGAGCCTCGGGCACCATCA
1 GGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCG
* * * * * * * ** *
63863012 GCACCTCGGTG-TTATGATGTGCGAGAGCCTCAGACACTATCGGCAACCTAGGCCCTT-GGTCGT
63 GCACCTAGGTGCTT-GGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GT
63863075 GC
125 GC
** * * *
63863077 CAGAGCCTCGAGCACCATCGACAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * ** * ** * * ** * * *
63863142 AAACTAAGCCCTTGG-TCGTGCAAGAGCCTCAGGCACCATCGGTAAAATAGG-CCATTGGTTGTG
65 -ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGG-CACCTAGGTGC-TTAGATGTG
63863205 C
126 C
* * ** * * * *
63863206 GAGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGACCCTCGAACACCATCAG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-GCACCATCGG
** * *** * * ** *
63863269 CAACCTTA-GCCCTTGG-TCGTGCGGGAGCCTCGAAAACCATTGGCAACCTTGGCCCTT-GGTCG
64 C-ACC-TAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-G
63863331 TGC
124 TGC
* * * **
63863334 GAGAGCCTCGGGCTCCATCGGTAAAATAGGCCCTTGGTCGTGCGAGA-CCTCGGCTACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGC-ACCATCGGC
** ** * * * ** *
63863398 ATTTAGGTGCTTGGATGTGTGGGAGCCTCGGACACCATCGGCAAACTGGGCCCTTGGATGTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGATGTGC
* * * * *
63863461 AGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * * * ** ** ** *
63863526 ACCTCGGTGCTAT-GATGTGCGGGAGCCTCAGACACTGTCGATAACCTAGGCCCTT-GGTCGTGC
65 ACCTAGGTGCT-TGGATGTACGGGAGCCTCGGGCACCATCG-GCACCTAGGTGCTTAGAT-GTGC
* * * * ** * *
63863589 GGGAGCCTCGAGCACCATCGAC-ACATTGGTGCTTGGAT-GTGCGGGAACCTCGTGCACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-GCACCATCGG
* ** * * * * * * * ** * ** *
63863652 TAACCTAGGCCCTTGG-TCGTACGTGAGCGTTGGGCACCAACGACAAACTAAGCCCTTGGCCGTA
64 -CACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGATGTG
63863716 C
126 C
* * ** * *
63863717 GAGAGCCTCGGCCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC-GGCACCATCGG
* ** * * * *
63863780 CAAACTAGGCCCTTGG-TCTTACAGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTTGATGTGC
64 C-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
* *
63863844 GGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCTAGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * * * * * * *
63863909 ACCTAGGTGCTTGGATGTGCGGGTGCCTCGGACACCATCGGCAAACTAGG-CCTTTGGTCTTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * ** * *
63863972 GGGAGCCTCGAGCACCATCGGCTACCTAGGCCCTTGGTCGTATGAAAGCCTCAAGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC
* * * *
63864037 A--TATGTGCGCTCGGATGTTCGGGAGCCTCGGGCACCATCGGCACCTCGGTGC-TATGATGTGC
65 ACCTA-G-GTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTA-GATGTGC
* * * * *
63864099 GGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGGTTGTGCCAGAGCCTCGAGCACCATCGAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
* ** ** * * * **
63864164 AACCTTGGCCCTTGG-TCGTGTGAGAGCCTCGGGCACCATCGGCAAACTAAGCCCTTAG-TCGTG
65 -ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTG
63864227 C
126 C
* * ** * * *
63864228 GGAAGCCTCGGGCACCATTGGCAAAATAGGCCTTTGGTCGTGCAAAAGCCTCGGCCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGC
* ** * * ** *
63864293 ACCTAGGTGCTTGGATGTACGGGACCCTCGAACACCATCGGTAACCTTGGCCCTT-GGTCGTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTAGAT-GTGC
** * * *
63864356 GGGAGCCTCGAACACCATTGGCAACCTTA-GCCCTTGGTCGTGCGAGAGCCTCGGGCTCCATCGA
1 GGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGG
** ** *
63864420 CAAAATAGGCCCTTGG-TCGT--GTGAGACCTC-GGCTACCATCGGCACCTAGGTGCTTAGATGT
64 C-ACCTAGGTGCTTGGAT-GTACGGGAG-CCTCGGGC-ACCATCGGCACCTAGGTGCTTAGATGT
63864481 GC
125 GC
* * * * *
63864483 GGGAGCCTCGGACACCATCGGCAAACTGGGCCCTTGGAT-GTG-TAGGAGCCTCAGACACCATCG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAGCCTC-GGCACCATCG
* ** *
63864546 GCAAACTAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCATCGGCACCTCGGTGC-TATGATGT
63 GC-ACCTAGGTGCTTGGAT-GTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTA-GATGT
63864609 GC
125 GC
* * ** ** * *
63864611 GGGAGCCTCAGACACTGTCGATAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGC
* * * * * ** * * *
63864676 ACCTTGATGCTTGGATGTGCGGGAACCTCGTGCACCATCGGCAACCTAGGCCCTT-GGTCATAC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTAGAT-GTGC
* * * * *
63864739 GAGAGCCTTGGGCACCATCGGCAAACTATGCCCTTGGCCGTGCGAGAGCCTCGGCCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGC
* * * *
63864804 ACCTAAGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTTGCTGGCTCAGATGTGC
65 ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGT-GCTTAGATGTGC
* * * ** * *
63864867 GGGAGCCTCGGGCAGCATCAG-AACCTCGGTGGCTAGGAT-GTGCGGGAGCCTCGGACACCATCG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCG
* * * * * *
63864930 TCAACCTTGGTGCTTAGATGTACGGGACCCTCGGGCACCATCGGCACCTTGGTGCTTGGGATGTG
63 GC-ACCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTT-AGATGTG
63864995 C
126 C
63864996 GGG
1 GGG
63864999 CTAAAGAAAA
Statistics
Matches: 8454, Mismatches: 2120, Indels: 1032
0.73 0.18 0.09
Matches are distributed among these distances:
108 3 0.00
109 15 0.00
110 25 0.00
111 1 0.00
112 5 0.00
113 1 0.00
114 1 0.00
115 1 0.00
116 2 0.00
117 3 0.00
118 8 0.00
119 24 0.00
120 14 0.00
121 1 0.00
122 2 0.00
124 1 0.00
125 8 0.00
126 290 0.03
127 3276 0.39
128 3934 0.47
129 823 0.10
130 16 0.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (126 bp):
GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCA
CCTAGGTGCTTGGATGTACGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTAGATGTGC
Found at i:63864962 original size:86 final size:86
Alignment explanation
Indices: 63864787--63864998 Score: 232
Period size: 86 Copynumber: 2.5 Consensus size: 86
63864777 CGTGCGAGAG
* * * ** * *
63864787 CCTCGGCCACCATCGGCACCTAAGTGCTT-GGATGTACGGGAGCCTCGGGCACCATCGGCACCTT
1 CCTCGGGCACCATCAGAACCTCGGTGCTTAGGATGTGCGGGAGCCTCGGACACCATCGGCACCTT
* *
63864851 GCTGGCTCAGATGTGCGGGAG
66 GCTGGCTCAGATGTACGGGAC
* *
63864872 CCTCGGGCAGCATCAGAACCTCGGTGGC-TAGGATGTGCGGGAGCCTCGGACACCATCGTCAACC
1 CCTCGGGCACCATCAGAACCTCGGT-GCTTAGGATGTGCGGGAGCCTCGGACACCATCGGC-ACC
* *
63864936 TTGGT-GCTTAGATGTACGGGAC
64 TTGCTGGCTCAGATGTACGGGAC
* * * *
63864958 CCTCGGGCACCATCGGCACCTTGGTGCTTGGGATGTGCGGG
1 CCTCGGGCACCATCAGAACCTCGGTGCTTAGGATGTGCGGG
63864999 CTAAAGAAAA
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
85 22 0.21
86 76 0.72
87 7 0.07
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.20
Consensus pattern (86 bp):
CCTCGGGCACCATCAGAACCTCGGTGCTTAGGATGTGCGGGAGCCTCGGACACCATCGGCACCTT
GCTGGCTCAGATGTACGGGAC
Found at i:63868988 original size:28 final size:27
Alignment explanation
Indices: 63868957--63869041 Score: 66
Period size: 29 Copynumber: 3.0 Consensus size: 27
63868947 ATAGATATTT
63868957 ATTTCTTTCAAATATTTTAACATCTTTA
1 ATTT-TTTCAAATATTTTAACATCTTTA
** * *
63868985 ATTTATTTCAGCTTATTTCAACATCGTTA
1 ATTT-TTTCA-AATATTTTAACATCTTTA
*
63869014 ATTTATTCAAATTTATTTTAA-AT-TTTA
1 ATTTTTTCAAA--TATTTTAACATCTTTA
63869041 A
1 A
63869042 ATTTATATAT
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
27 4 0.09
28 15 0.34
29 25 0.57
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.53
Consensus pattern (27 bp):
ATTTTTTCAAATATTTTAACATCTTTA
Found at i:63871197 original size:3 final size:3
Alignment explanation
Indices: 63871182--63871246 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
63871172 TAATCACTTA
* ** * * *
63871182 ATT ATT TTT ATT ATT ATT GCT ATT ATT -TT TTT ATC AAT ATTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
*
63871227 ATT GTT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
63871247 ATTTGATTAT
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
2 2 0.04
3 43 0.91
4 2 0.04
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:63873024 original size:20 final size:20
Alignment explanation
Indices: 63872999--63873040 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
63872989 CTAGGAATAA
63872999 AAACTTTAACAAAATTACTT
1 AAACTTTAACAAAATTACTT
63873019 AAACTTTAACAAAATTACTT
1 AAACTTTAACAAAATTACTT
63873039 AA
1 AA
63873041 TCATTTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.33
Consensus pattern (20 bp):
AAACTTTAACAAAATTACTT
Found at i:63877951 original size:25 final size:25
Alignment explanation
Indices: 63877913--63877967 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
63877903 ATTGAGAACC
* *
63877913 TTAAAAAATATGGCTTGGAAACATT
1 TTAAAAAATATGGCTTAGAAAAATT
*
63877938 TTAAAAAATGTGGCTTAGAAAAATT
1 TTAAAAAATATGGCTTAGAAAAATT
63877963 TTAAA
1 TTAAA
63877968 GGACTTGGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (25 bp):
TTAAAAAATATGGCTTAGAAAAATT
Found at i:63878311 original size:24 final size:24
Alignment explanation
Indices: 63878282--63878327 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
63878272 TTTACTATTG
63878282 ATATTCCTGGGAAAA-TATCATTTA
1 ATATTCCT-GGAAAAGTATCATTTA
63878306 ATATTCCTGGAAAAGTATCATT
1 ATATTCCTGGAAAAGTATCATT
63878328 CAATTACACC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (24 bp):
ATATTCCTGGAAAAGTATCATTTA
Found at i:63888832 original size:22 final size:22
Alignment explanation
Indices: 63888806--63888851 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
63888796 ATTAGTTAAC
63888806 CACACCTTCCATTCCATGAATT
1 CACACCTTCCATTCCATGAATT
63888828 CACACCTTCCATTCCATGAATT
1 CACACCTTCCATTCCATGAATT
63888850 CA
1 CA
63888852 ATACAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.37, G:0.04, T:0.30
Consensus pattern (22 bp):
CACACCTTCCATTCCATGAATT
Found at i:63895675 original size:26 final size:26
Alignment explanation
Indices: 63895646--63895701 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
63895636 CCATTTTTTT
* * *
63895646 AATAAACACCAAAAATTTATTTTAAA
1 AATAAAAAACAAAAATGTATTTTAAA
*
63895672 AATAAAAAATAAAAATGTATTTTAAA
1 AATAAAAAACAAAAATGTATTTTAAA
63895698 AATA
1 AATA
63895702 TTTTAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.30
Consensus pattern (26 bp):
AATAAAAAACAAAAATGTATTTTAAA
Found at i:63897666 original size:38 final size:39
Alignment explanation
Indices: 63897605--63897683 Score: 142
Period size: 38 Copynumber: 2.0 Consensus size: 39
63897595 ATATTCCGAG
63897605 CCTATATTTTTACCCGAATCCTCCCATATTTCAGGCGGGC
1 CCTATATTTTTA-CCGAATCCTCCCATATTTCAGGCGGGC
63897645 CCTATATTTTT-CCGAATCCTCCCATATTTCAGGCGGGC
1 CCTATATTTTTACCGAATCCTCCCATATTTCAGGCGGGC
63897683 C
1 C
63897684 GTCGGGCTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 28 0.72
40 11 0.28
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33
Consensus pattern (39 bp):
CCTATATTTTTACCGAATCCTCCCATATTTCAGGCGGGC
Found at i:63901578 original size:26 final size:26
Alignment explanation
Indices: 63901516--63901578 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
63901506 AATAAACACC
63901516 AAAAATTTATTTTAAAAATAAAAAAT
1 AAAAATTTATTTTAAAAATAAAAAAT
**
63901542 AAAAAAGTATTTTAAAAATAAAAAAT
1 AAAAATTTATTTTAAAAATAAAAAAT
* *
63901568 ATATATTTATT
1 AAAAATTTATT
63901579 ATATTTGGAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (26 bp):
AAAAATTTATTTTAAAAATAAAAAAT
Found at i:63902202 original size:147 final size:147
Alignment explanation
Indices: 63901935--63902222 Score: 531
Period size: 147 Copynumber: 2.0 Consensus size: 147
63901925 TGATATCTAT
* *
63901935 GCAAGATTTCACCAGCAATGGCCTTTCTTTTGGAGTCAACTACTTTCTTATTCATATTCTCTATT
1 GCAAGATTTCACCAGCAATGGCCTCTCTTTTGCAGTCAACTACTTTCTTATTCATATTCTCTATT
*
63902000 ACATTGACTCTTATCCCAAATAGACACGCTATTTCCTTCATCGTATTGCACGGTAATGTTCTTAT
66 ACATTGACTCTTATCCCAAATAGACACGCTATTCCCTTCATCGTATTGCACGGTAATGTTCTTAT
63902065 CCCAATATCTTCCCTCC
131 CCCAATATCTTCCCTCC
63902082 GCAAGATTTCACCAGCAATGGCCTCTCTTTTGCAGTCAACTACTTTCTTATTCATATTCTCTATT
1 GCAAGATTTCACCAGCAATGGCCTCTCTTTTGCAGTCAACTACTTTCTTATTCATATTCTCTATT
* *
63902147 ACATTGATTCTTATCCCAAATAGACACGTTATTCCCTTCATCGTATTGCACGGTAATGTTCTTAT
66 ACATTGACTCTTATCCCAAATAGACACGCTATTCCCTTCATCGTATTGCACGGTAATGTTCTTAT
63902212 CCCAATATCTT
131 CCCAATATCTT
63902223 TTCTTTTCAA
Statistics
Matches: 136, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
147 136 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (147 bp):
GCAAGATTTCACCAGCAATGGCCTCTCTTTTGCAGTCAACTACTTTCTTATTCATATTCTCTATT
ACATTGACTCTTATCCCAAATAGACACGCTATTCCCTTCATCGTATTGCACGGTAATGTTCTTAT
CCCAATATCTTCCCTCC
Found at i:63916390 original size:110 final size:111
Alignment explanation
Indices: 63916182--63916402 Score: 390
Period size: 110 Copynumber: 2.0 Consensus size: 111
63916172 TTTTTGTTGG
63916182 CTCATTATTGAAATGTATAATTTGTATTATGAATTGGTTTAGAAGTGATAAATGATGTGATTATA
1 CTCATTATTGAAA-GTATAATTTGTATTATGAATTGGTTTAGAAGTGATAAATGATGTGATTATA
* *
63916247 TGTTCGGTTAATGATAGGTTGATTGAATATGTATATATGTAAGTATA
65 TGTTCAGTTAATGATAGGTTGATTGAATATGTATATATATAAGTATA
63916294 CTCATTATTGAAA-TATAATTTGTATTATGAATTGGTTTAGAAGTGATAAATGATGTGATTATAT
1 CTCATTATTGAAAGTATAATTTGTATTATGAATTGGTTTAGAAGTGATAAATGATGTGATTATAT
* *
63916358 GTTCAGTTAATGATAGTTTGATTGGATATGTATATATATAAGTAT
66 GTTCAGTTAATGATAGGTTGATTGAATATGTATATATATAAGTAT
63916403 GACATATTTG
Statistics
Matches: 105, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
110 92 0.88
112 13 0.12
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (111 bp):
CTCATTATTGAAAGTATAATTTGTATTATGAATTGGTTTAGAAGTGATAAATGATGTGATTATAT
GTTCAGTTAATGATAGGTTGATTGAATATGTATATATATAAGTATA
Found at i:63917981 original size:87 final size:88
Alignment explanation
Indices: 63917870--63918045 Score: 345
Period size: 87 Copynumber: 2.0 Consensus size: 88
63917860 AAAAAAATTC
63917870 TCAATTGTTTATTTATTTCATTTTAAAACAATTTTTATGAAAATTTTGTATGAAATCTATTAAAC
1 TCAATTGTTTATTTATTTCATTTTAAAACAATTTTTATGAAAATTTTGTATGAAATCTATTAAAC
63917935 AACCAAAAATATTTTACACATAT
66 AACCAAAAATATTTTACACATAT
63917958 TCAATTGTTT-TTTATTTCATTTTAAAACAATTTTTATGAAAATTTTGTATGAAATCTATTAAAC
1 TCAATTGTTTATTTATTTCATTTTAAAACAATTTTTATGAAAATTTTGTATGAAATCTATTAAAC
63918022 AACCAAAAATATTTTACACATAT
66 AACCAAAAATATTTTACACATAT
63918045 T
1 T
63918046 TATTTAAGAC
Statistics
Matches: 88, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
87 78 0.89
88 10 0.11
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (88 bp):
TCAATTGTTTATTTATTTCATTTTAAAACAATTTTTATGAAAATTTTGTATGAAATCTATTAAAC
AACCAAAAATATTTTACACATAT
Found at i:63918723 original size:125 final size:124
Alignment explanation
Indices: 63918444--63918724 Score: 374
Period size: 125 Copynumber: 2.2 Consensus size: 124
63918434 TTATTTCGAG
**
63918444 TTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATCAGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTGATACCAGGATGCTATCAGAGAAGAAATTGT
* *
63918508 GAAATCGTGCCCTCGTGGACGCCCATTTCGGCCAGTTGGTCATGTCAGAAATAATTTTTT
65 GAAATCGCGCCCTCGTGAACGCCCATTTCGGCCAGTTGGTCATGTCAGAAATAATTTTTT
* *
63918568 TTGACGTTTTCTAAGCAAATAGAATAAAATCGCTGATACCAGGATGCTAT-ATGAGAAGAAATTG
1 TTGACG-TTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTATCA-GAGAAGAAATTG
* *
63918632 TGAAATCGCGCCCTCGTGAACG-CTATTTC-GCTATAGTTGGTCATGT-AGGAAATAATTGTTTT
64 TGAAATCGCGCCCTCGTGAACGCCCATTTCGGC--CAGTTGGTCATGTCA-GAAATAATT-TTTT
* *
63918694 TTGACGTTTCTGAGCAAATAGTGTCAAATCG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCG
63918725 TGCCCTCGTG
Statistics
Matches: 138, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
123 2 0.01
124 14 0.10
125 111 0.80
126 11 0.08
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (124 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTATCAGAGAAGAAATTGTG
AAATCGCGCCCTCGTGAACGCCCATTTCGGCCAGTTGGTCATGTCAGAAATAATTTTTT
Found at i:63926355 original size:28 final size:29
Alignment explanation
Indices: 63926297--63926359 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
63926287 TCCATTGATG
* *
63926297 AAAATATAAAAAAATTTAAAATTATTTTT
1 AAAAAATAAAAAAATTTAAAATTATTCTT
*
63926326 AAAAAATAAAAATATTTAAAATT-TTCTT
1 AAAAAATAAAAAAATTTAAAATTATTCTT
63926354 AAAAAA
1 AAAAAA
63926360 ATGAAATTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (29 bp):
AAAAAATAAAAAAATTTAAAATTATTCTT
Found at i:63926439 original size:21 final size:20
Alignment explanation
Indices: 63926405--63926443 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
63926395 TTGAGAGATT
63926405 TTTTGAAGGAAATTGTGAGGA
1 TTTTGAAGGAAATT-TGAGGA
63926426 TTTTGAAAGG-AATTTGAG
1 TTTTG-AAGGAAATTTGAG
63926444 AGTTTAAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (20 bp):
TTTTGAAGGAAATTTGAGGA
Found at i:63926470 original size:52 final size:52
Alignment explanation
Indices: 63926398--63926497 Score: 139
Period size: 52 Copynumber: 1.9 Consensus size: 52
63926388 TATGGAGTTG
* * ** *
63926398 AGAGATTTTTTGAAGGAAATTGTGAGGA-TTTTGAAAGGAATTTGAGAGTTTA
1 AGAGAATTTTGGAAGGAAATTAAGAGAATTTTTG-AAGGAATTTGAGAGTTTA
63926450 AGAGAATTTTGGAAGGAAATTAAGAGAATTTTTGAAGGAATTTGAGAG
1 AGAGAATTTTGGAAGGAAATTAAGAGAATTTTTGAAGGAATTTGAGAG
63926498 AATTTTTGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
52 37 0.88
53 5 0.12
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (52 bp):
AGAGAATTTTGGAAGGAAATTAAGAGAATTTTTGAAGGAATTTGAGAGTTTA
Found at i:63926516 original size:22 final size:22
Alignment explanation
Indices: 63926450--63926518 Score: 102
Period size: 22 Copynumber: 3.1 Consensus size: 22
63926440 TGAGAGTTTA
* *
63926450 AGAGAATTTTGGAAGGAAATTA
1 AGAGAATTTTTGAAGGAAATTG
*
63926472 AGAGAATTTTTGAAGGAATTTG
1 AGAGAATTTTTGAAGGAAATTG
*
63926494 AGAGAATTTTTGAATGAAATTG
1 AGAGAATTTTTGAAGGAAATTG
63926516 AGA
1 AGA
63926519 TGGGATTTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32
Consensus pattern (22 bp):
AGAGAATTTTTGAAGGAAATTG
Found at i:63933035 original size:18 final size:18
Alignment explanation
Indices: 63933012--63933075 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
63933002 GATAGAATAA
63933012 AAATTATAAAAAATTAAG
1 AAATTATAAAAAATTAAG
*
63933030 AAATTATATTAAAA-TATA-
1 AAATTATA-AAAAATTA-AG
*
63933048 AAATTATTAATAAATT-AG
1 AAATTA-TAAAAAATTAAG
63933066 AAAATTATAA
1 -AAATTATAA
63933076 CAATAAATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
17 1 0.03
18 22 0.59
19 14 0.38
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AAATTATAAAAAATTAAG
Found at i:63933061 original size:19 final size:19
Alignment explanation
Indices: 63933030--63933073 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
63933020 AAAAATTAAG
* *
63933030 AAATTA-TATTAAAATATA
1 AAATTATTAATAAAATAGA
*
63933048 AAATTATTAATAAATTAGA
1 AAATTATTAATAAAATAGA
63933067 AAATTAT
1 AAATTAT
63933074 AACAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AAATTATTAATAAAATAGA
Found at i:63933182 original size:158 final size:159
Alignment explanation
Indices: 63933000--63933319 Score: 624
Period size: 158 Copynumber: 2.0 Consensus size: 159
63932990 AATTAGAAAA
63933000 TAGATAGAATAAAAATTATAAAAAATTAAGAAATTATATTAAAATATAAAATTATTAATAAATTA
1 TAGATAGAAT-AAAATTATAAAAAATTAAGAAATTATATTAAAATATAAAATTATTAATAAATTA
63933065 GAAAATTATAACAATAAATTATTTAAAAATCAGAATGATCTTATTAGCCTAAGAATTATACAAAA
65 GAAAATTATAACAATAAATTATTTAAAAATCAGAATGATCTTATTAGCCTAAGAATTATACAAAA
63933130 GTCAATTTAGCTTTTTTATTTATTATTTTT
130 GTCAATTTAGCTTTTTTATTTATTATTTTT
63933160 TAGATAGAAT-AAATTATAAAAAATTAAGAAATTATATTAAAATATAAAATTATTAATAAATTAG
1 TAGATAGAATAAAATTATAAAAAATTAAGAAATTATATTAAAATATAAAATTATTAATAAATTAG
63933224 AAAATTATAACAATAAATTATTTAAAAATCAGAATGATCTTATTAGCCTAAGAATTATACAAAAG
66 AAAATTATAACAATAAATTATTTAAAAATCAGAATGATCTTATTAGCCTAAGAATTATACAAAAG
63933289 TCAATTTAGCTTTTTTATTTATTATTTTT
131 TCAATTTAGCTTTTTTATTTATTATTTTT
63933318 TA
1 TA
63933320 CGCTTCATTT
Statistics
Matches: 160, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
158 150 0.94
160 10 0.06
ACGTcount: A:0.50, C:0.05, G:0.06, T:0.39
Consensus pattern (159 bp):
TAGATAGAATAAAATTATAAAAAATTAAGAAATTATATTAAAATATAAAATTATTAATAAATTAG
AAAATTATAACAATAAATTATTTAAAAATCAGAATGATCTTATTAGCCTAAGAATTATACAAAAG
TCAATTTAGCTTTTTTATTTATTATTTTT
Found at i:63933193 original size:18 final size:18
Alignment explanation
Indices: 63933170--63933233 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
63933160 TAGATAGAAT
63933170 AAATTATAAAAAATTAAG
1 AAATTATAAAAAATTAAG
*
63933188 AAATTATATTAAAA-TATA-
1 AAATTATA-AAAAATTA-AG
*
63933206 AAATTATTAATAAATT-AG
1 AAATTA-TAAAAAATTAAG
63933224 AAAATTATAA
1 -AAATTATAA
63933234 CAATAAATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
17 1 0.03
18 22 0.59
19 14 0.38
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AAATTATAAAAAATTAAG
Found at i:63933219 original size:19 final size:19
Alignment explanation
Indices: 63933188--63933231 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
63933178 AAAAATTAAG
* *
63933188 AAATTA-TATTAAAATATA
1 AAATTATTAATAAAATAGA
*
63933206 AAATTATTAATAAATTAGA
1 AAATTATTAATAAAATAGA
63933225 AAATTAT
1 AAATTAT
63933232 AACAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AAATTATTAATAAAATAGA
Found at i:63933626 original size:64 final size:64
Alignment explanation
Indices: 63933548--63933677 Score: 233
Period size: 64 Copynumber: 2.0 Consensus size: 64
63933538 CACTCATAAA
* * *
63933548 GGGAGGATATGAATTCAAATATTAGAGTAGACATTGTTGAGAGAGATAACCATGAACTCCGAAG
1 GGGAGGATACGAATTCAAATATTAGAGTAGACATTGTTGAGAGAGACAACCATGAACTCCAAAG
63933612 GGGAGGATACGAATTCAAATATTAGAGTAGACATTGTTGAGAGAGACAACCATGAACTCCAAAG
1 GGGAGGATACGAATTCAAATATTAGAGTAGACATTGTTGAGAGAGACAACCATGAACTCCAAAG
63933676 GG
1 GG
63933678 ATTAAGTATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.39, C:0.12, G:0.27, T:0.22
Consensus pattern (64 bp):
GGGAGGATACGAATTCAAATATTAGAGTAGACATTGTTGAGAGAGACAACCATGAACTCCAAAG
Found at i:63934124 original size:17 final size:16
Alignment explanation
Indices: 63934102--63934158 Score: 71
Period size: 16 Copynumber: 3.5 Consensus size: 16
63934092 TAAAAAAACT
63934102 AATAAAATATTATAAAA
1 AATAAAA-ATTATAAAA
**
63934119 AATAAAAATGGTAAAA
1 AATAAAAATTATAAAA
63934135 AATAAAAAATTAT-AAA
1 AAT-AAAAATTATAAAA
63934151 AATAAAAA
1 AATAAAAA
63934159 AAATTCAGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
15 5 0.14
16 16 0.46
17 14 0.40
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.23
Consensus pattern (16 bp):
AATAAAAATTATAAAA
Found at i:63934159 original size:17 final size:17
Alignment explanation
Indices: 63934090--63934160 Score: 58
Period size: 17 Copynumber: 4.1 Consensus size: 17
63934080 TATTAAAATT
*
63934090 ATTAAAAAAACTAATAAAA
1 ATTATAAAAA-TAA-AAAA
*
63934109 TATTATAAAAA-ATAAAA
1 -ATTATAAAAATAAAAAA
63934126 ATGGTA-AAAAAT-AAAAA
1 AT--TATAAAAATAAAAAA
63934143 ATTATAAAAATAAAAAA
1 ATTATAAAAATAAAAAA
63934160 A
1 A
63934161 ATTCAGAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
15 2 0.05
16 8 0.19
17 21 0.49
18 3 0.07
20 9 0.21
ACGTcount: A:0.73, C:0.01, G:0.03, T:0.23
Consensus pattern (17 bp):
ATTATAAAAATAAAAAA
Found at i:63934212 original size:70 final size:71
Alignment explanation
Indices: 63934124--63934264 Score: 275
Period size: 70 Copynumber: 2.0 Consensus size: 71
63934114 TAAAAAATAA
63934124 AAATGGTAAAAAATAAAAAATTATAAAAATAAAAAAAATTCAGAAAAAAAATCTAAAAGAAAAAG
1 AAATGGTAAAAAATAAAAAATTATAAAAATAAAAAAAATTCAGAAAAAAAATCTAAAAGAAAAAG
63934189 TTACAG
66 TTACAG
63934195 AAATGGT-AAAAATAAAAAATTATAAAAATAAAAAAAATTCAGAAAAAAAATCTAAAAGAAAAAG
1 AAATGGTAAAAAATAAAAAATTATAAAAATAAAAAAAATTCAGAAAAAAAATCTAAAAGAAAAAG
63934259 TTACAG
66 TTACAG
63934265 CTAAATTAAT
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 63 0.90
71 7 0.10
ACGTcount: A:0.69, C:0.04, G:0.09, T:0.18
Consensus pattern (71 bp):
AAATGGTAAAAAATAAAAAATTATAAAAATAAAAAAAATTCAGAAAAAAAATCTAAAAGAAAAAG
TTACAG
Found at i:63935787 original size:26 final size:26
Alignment explanation
Indices: 63935758--63935807 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
63935748 TCTCGTCCCT
63935758 ATTTTATCCC-CGATAAAATTTTGACA
1 ATTTTA-CCCTCGATAAAATTTTGACA
* *
63935784 ATTTTACCCTTGGTAAAATTTTGA
1 ATTTTACCCTCGATAAAATTTTGA
63935808 GAAAATGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 18 0.86
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTCGATAAAATTTTGACA
Found at i:63937034 original size:17 final size:17
Alignment explanation
Indices: 63937009--63937042 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
63936999 AAGTATATTA
*
63937009 ATTTAATTAATCAATTT
1 ATTTAATTAACCAATTT
*
63937026 ATTTTATTAACCAATTT
1 ATTTAATTAACCAATTT
63937043 GTTCAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTAATTAACCAATTT
Found at i:63946591 original size:36 final size:36
Alignment explanation
Indices: 63946513--63946592 Score: 124
Period size: 36 Copynumber: 2.2 Consensus size: 36
63946503 TTATGAAAGT
63946513 CGGTGTGTTTTGGAGGGATTAACTCGTGTGAGCATC
1 CGGTGTGTTTTGGAGGGATTAACTCGTGTGAGCATC
* **
63946549 CAGTGTGTTTTGGAGGGATTGGCTCGTGTGAGCATC
1 CGGTGTGTTTTGGAGGGATTAACTCGTGTGAGCATC
*
63946585 TGGTGTGT
1 CGGTGTGT
63946593 GTTTTAGTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.14, C:0.12, G:0.39, T:0.35
Consensus pattern (36 bp):
CGGTGTGTTTTGGAGGGATTAACTCGTGTGAGCATC
Found at i:63947584 original size:19 final size:19
Alignment explanation
Indices: 63947560--63947613 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
63947550 AATCTTCGAG
63947560 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
63947579 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
63947598 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
63947614 AGATGTGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:63948126 original size:12 final size:11
Alignment explanation
Indices: 63948061--63948128 Score: 57
Period size: 12 Copynumber: 5.9 Consensus size: 11
63948051 AATTTTTTAT
63948061 TTTTATTATTA
1 TTTTATTATTA
*
63948072 TTAT-TTATTAA
1 TTTTATTATT-A
**
63948083 TCCTATTATTA
1 TTTTATTATTA
*
63948094 TTTGTACTATTA
1 TTT-TATTATTA
63948106 TTGTTATTATTA
1 TT-TTATTATTA
63948118 TTTTCATTATT
1 TTTT-ATTATT
63948129 TCTTCTTATC
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
10 5 0.11
11 10 0.22
12 29 0.64
13 1 0.02
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:63959432 original size:28 final size:28
Alignment explanation
Indices: 63959401--63959461 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
63959391 TATTTTATTA
63959401 TTTCATAGATTATTCATTTTAATTAAAT
1 TTTCATAGATTATTCATTTTAATTAAAT
63959429 TTTCATAGATTATTCATTTTAATTAAAT
1 TTTCATAGATTATTCATTTTAATTAAAT
63959457 TTTCA
1 TTTCA
63959462 CGAAACAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.54
Consensus pattern (28 bp):
TTTCATAGATTATTCATTTTAATTAAAT
Found at i:63964838 original size:30 final size:30
Alignment explanation
Indices: 63964802--63964862 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
63964792 ATGAACTAGA
63964802 TGTTAATTTACTTATCGTTTTTATTAACAT
1 TGTTAATTTACTTATCGTTTTTATTAACAT
63964832 TGTTAATTTACTTATCGTTTTTATTAACAT
1 TGTTAATTTACTTATCGTTTTTATTAACAT
63964862 T
1 T
63964863 CACTGAGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.10, G:0.07, T:0.57
Consensus pattern (30 bp):
TGTTAATTTACTTATCGTTTTTATTAACAT
Found at i:63966507 original size:12 final size:12
Alignment explanation
Indices: 63966490--63966514 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63966480 GCAAGTTTCC
63966490 ATTTTCATTTTT
1 ATTTTCATTTTT
63966502 ATTTTCATTTTT
1 ATTTTCATTTTT
63966514 A
1 A
63966515 GAAACCTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (12 bp):
ATTTTCATTTTT
Found at i:63967792 original size:20 final size:20
Alignment explanation
Indices: 63967767--63967804 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
63967757 TGAAAGTTTA
63967767 GGATTTAGAGACTAAATTTC
1 GGATTTAGAGACTAAATTTC
63967787 GGATTTAGAGACTAAATT
1 GGATTTAGAGACTAAATT
63967805 GAATAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (20 bp):
GGATTTAGAGACTAAATTTC
Found at i:63969320 original size:5 final size:5
Alignment explanation
Indices: 63969286--63969334 Score: 62
Period size: 5 Copynumber: 9.4 Consensus size: 5
63969276 GACCTGATTA
* *
63969286 TTATT TTATT ATTTTT ATTATT TTACT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT -TTATT -TTATT TTATT TTATT TTATT TTATT TTATT TT
63969335 CTATGACTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
5 30 0.77
6 9 0.23
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:63973657 original size:21 final size:21
Alignment explanation
Indices: 63973633--63973676 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
63973623 GAATCTTTAG
*
63973633 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
63973654 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
63973675 TA
1 TA
63973677 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:63991341 original size:19 final size:19
Alignment explanation
Indices: 63991317--63991357 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
63991307 TATTTTAAAG
*
63991317 TTATTTAGGTATATAAATC
1 TTATTTAGGTAGATAAATC
*
63991336 TTATTTGGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
63991355 TTA
1 TTA
63991358 GAATAAATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.15, T:0.46
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:63991830 original size:24 final size:24
Alignment explanation
Indices: 63991801--63991846 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
63991791 ATCGCCAATC
63991801 AAATATGCATGATCCAACAAAAAA
1 AAATATGCATGATCCAACAAAAAA
63991825 AAATATGCATGATCCAACAAAA
1 AAATATGCATGATCCAACAAAA
63991847 TTGAAACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.17
Consensus pattern (24 bp):
AAATATGCATGATCCAACAAAAAA
Found at i:63998381 original size:423 final size:423
Alignment explanation
Indices: 63997595--63998440 Score: 1660
Period size: 423 Copynumber: 2.0 Consensus size: 423
63997585 GATAGTTAAC
63997595 CCTACCTGCCGGAAAGAGGAGCCTCCATTTATCGTTTATCACCCCCTATCTAGTATTTCTCTAAT
1 CCTACCTGCCGGAAAGAGGAGCCTCCATTTATCGTTTATCACCCCCTATCTAGTATTTCTCTAAT
63997660 ATTTGTCTCAGGTAAATTTCCCATTTCCCATGTAAACCATACTCCTGAATATCCCAGATCTTCTA
66 ATTTGTCTCAGGTAAATTTCCCATTTCCCATGTAAACCATACTCCTGAATATCCCAGATCTTCTA
63997725 AATGACATTGTTCAAGGGCTTCTCGGAATGCATGCATTCTGCTCTCGTCTCTTTGGATGCCCCCA
131 AATGACATTGTTCAAGGGCTTCTCGGAATGCATGCATTCTGCTCTCGTCTCTTTGGATGCCCCCA
63997790 CACTTCTCATAAGAGTTATAAGTCTCATAAATTTCACCACTAACCAGCCATGGATAATTCTTATC
196 CACTTCTCATAAGAGTTATAAGTCTCATAAATTTCACCACTAACCAGCCATGGATAATTCTTATC
63997855 AAGCCCCAAAGTTATCAATAAATCCCATGAAACATTCTTATTCTGAACATATAGAGAACCATAAA
261 AAGCCCCAAAGTTATCAATAAATCCCATGAAACATTCTTATTCTGAACATATAGAGAACCATAAA
63997920 ACCCTGTAAATCTCCACTCTTTTTTAACCTGCTCCTCTTTAACCAAAACGTCAATATGGTTTTTA
326 ACCCTGTAAATCTCCACTCTTTTTTAACCTGCTCCTCTTTAACCAAAACGTCAATATGGTTTTTA
63997985 GAAAAACTCCGTAAACTAATTATCAAATCTCCT
391 GAAAAACTCCGTAAACTAATTATCAAATCTCCT
63998018 CCTACCTGCCGGAAAGAGGAGCCTCCATTTATCGTTTATCACCCCCTATCTAGTATTTCTCTAAT
1 CCTACCTGCCGGAAAGAGGAGCCTCCATTTATCGTTTATCACCCCCTATCTAGTATTTCTCTAAT
63998083 ATTTGTCTCAGGTAAATTTCCCATTTCCCATGTAAACCATACTCCTGAATATCCCAGATCTTCTA
66 ATTTGTCTCAGGTAAATTTCCCATTTCCCATGTAAACCATACTCCTGAATATCCCAGATCTTCTA
63998148 AATGACATTGTTCAAGGGCTTCTCGGAATGCATGCATTCTGCTCTCGTCTCTTTGGATGCCCCCA
131 AATGACATTGTTCAAGGGCTTCTCGGAATGCATGCATTCTGCTCTCGTCTCTTTGGATGCCCCCA
63998213 CACTTCTCATAAGAG-TATAAGATCTCATTAAA-TTCACCACTAACCAGCCATGGATAATTCTTA
196 CACTTCTCATAAGAGTTATAAG-TCTCA-TAAATTTCACCACTAACCAGCCATGGATAATTCTTA
63998276 TCAAGCCCCAAAGTTATCAATAAATCCCATGAAACATTCTTATTCTGAACATATAGAGAACCATA
259 TCAAGCCCCAAAGTTATCAATAAATCCCATGAAACATTCTTATTCTGAACATATAGAGAACCATA
63998341 AAACCCTGTAAATCTCCACTCTTTTTTAACCTGCTCCTCTTTAACCAAAACGTCAATATGGTTTT
324 AAACCCTGTAAATCTCCACTCTTTTTTAACCTGCTCCTCTTTAACCAAAACGTCAATATGGTTTT
63998406 TAGAAAAACTCCGTAAACTAATTATCAAATCTCCT
389 TAGAAAAACTCCGTAAACTAATTATCAAATCTCCT
63998441 TTCCAAGCTA
Statistics
Matches: 421, Mismatches: 0, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
422 6 0.01
423 411 0.98
424 4 0.01
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (423 bp):
CCTACCTGCCGGAAAGAGGAGCCTCCATTTATCGTTTATCACCCCCTATCTAGTATTTCTCTAAT
ATTTGTCTCAGGTAAATTTCCCATTTCCCATGTAAACCATACTCCTGAATATCCCAGATCTTCTA
AATGACATTGTTCAAGGGCTTCTCGGAATGCATGCATTCTGCTCTCGTCTCTTTGGATGCCCCCA
CACTTCTCATAAGAGTTATAAGTCTCATAAATTTCACCACTAACCAGCCATGGATAATTCTTATC
AAGCCCCAAAGTTATCAATAAATCCCATGAAACATTCTTATTCTGAACATATAGAGAACCATAAA
ACCCTGTAAATCTCCACTCTTTTTTAACCTGCTCCTCTTTAACCAAAACGTCAATATGGTTTTTA
GAAAAACTCCGTAAACTAATTATCAAATCTCCT
Found at i:64000674 original size:6 final size:6
Alignment explanation
Indices: 64000663--64000688 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
64000653 AAGCACTAAA
64000663 CTTAGC CTTAGC CTTAGC CTTAGC CT
1 CTTAGC CTTAGC CTTAGC CTTAGC CT
64000689 CGATGTACGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.35
Consensus pattern (6 bp):
CTTAGC
Found at i:64002092 original size:35 final size:35
Alignment explanation
Indices: 64002053--64002119 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
64002043 ACAAATCGAA
* *
64002053 GTAAACCATTTTAAAATATAATAAAATAATAACAC
1 GTAAACCATTTAAAAACATAATAAAATAATAACAC
* *
64002088 GTAAATCATTTAAAAACATAATACAATAATAA
1 GTAAACCATTTAAAAACATAATAAAATAATAA
64002120 AAAAGTTCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.28
Consensus pattern (35 bp):
GTAAACCATTTAAAAACATAATAAAATAATAACAC
Found at i:64010704 original size:28 final size:28
Alignment explanation
Indices: 64010672--64010729 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
64010662 TCAATTAATC
64010672 AATATAGAGCTAGTTGCTCTTACTCTCG
1 AATATAGAGCTAGTTGCTCTTACTCTCG
* *
64010700 AATATAGAGTTAGTTGCTCTTACTTTCG
1 AATATAGAGCTAGTTGCTCTTACTCTCG
64010728 AA
1 AA
64010730 AAAGATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (28 bp):
AATATAGAGCTAGTTGCTCTTACTCTCG
Found at i:64012886 original size:20 final size:20
Alignment explanation
Indices: 64012861--64012899 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
64012851 NNNNTCTAAA
64012861 ATATAAAATATTCATCAATT
1 ATATAAAATATTCATCAATT
* *
64012881 ATATAAAATGTTGATCAAT
1 ATATAAAATATTCATCAAT
64012900 AAATTTCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (20 bp):
ATATAAAATATTCATCAATT
Found at i:64017576 original size:479 final size:479
Alignment explanation
Indices: 64016679--64017637 Score: 1909
Period size: 479 Copynumber: 2.0 Consensus size: 479
64016669 ATCGGCTCTG
64016679 GGTCCCTGGCAATGTCAGAAATTTGGGAAAATGAAGAGTGAAATGCGGAAATTGGAAAAACAGAT
1 GGTCCCTGGCAATGTCAGAAATTTGGGAAAATGAAGAGTGAAATGCGGAAATTGGAAAAACAGAT
64016744 TGAGTCGATCATTGATTCCGCCAGCAGAGTGGATAGTGGGAAAAAGCTAAAGGAAGCTCGCAGAA
66 TGAGTCGATCATTGATTCCGCCAGCAGAGTGGATAGTGGGAAAAAGCTAAAGGAAGCTCGCAGAA
64016809 GGCTTGACTTTCACTATGCTAGGGAAGAAAGCTACTGGGCTCAAAGGTCTAGGTCGAGATGGCTT
131 GGCTTGACTTTCACTATGCTAGGGAAGAAAGCTACTGGGCTCAAAGGTCTAGGTCGAGATGGCTT
64016874 AGGGAGGGAGATCGAAATACTAGGTATTTCCATGCTAAAGCTACTGGTCGCCTGAAAAAGAACAA
196 AGGGAGGGAGATCGAAATACTAGGTATTTCCATGCTAAAGCTACTGGTCGCCTGAAAAAGAACAA
64016939 TATTGAGAGGATCAAAGATGTGGAAGGAAATTGGGTGACAAATAGTAAAGACATTTGTAAGGTGG
261 TATTGAGAGGATCAAAGATGTGGAAGGAAATTGGGTGACAAATAGTAAAGACATTTGTAAGGTGG
64017004 CTAAAGATTATTTTGTGAGTCTGTTCCGGGCAAACGGCCAAAATGTTGAAATCCAAGAGATGGGG
326 CTAAAGATTATTTTGTGAGTCTGTTCCGGGCAAACGGCCAAAATGTTGAAATCCAAGAGATGGGG
64017069 TACATGAAGGAGTGCGTGACGAGGGAAACAAATGAATGGCTCAATATGACCTATACAGAGGAAGA
391 TACATGAAGGAGTGCGTGACGAGGGAAACAAATGAATGGCTCAATATGACCTATACAGAGGAAGA
64017134 GGTTCTTCAAGCTATCAAGCAAAT
456 GGTTCTTCAAGCTATCAAGCAAAT
64017158 GGTCCCTGGCAATGTCAGAAATTTGGGAAAATGAAGAGTGAAATGCGGAAATTGGAAAAACAGAT
1 GGTCCCTGGCAATGTCAGAAATTTGGGAAAATGAAGAGTGAAATGCGGAAATTGGAAAAACAGAT
64017223 TGAGTCGATCATTGATTCCGCCAGCAGAGTGGATAGTGGGAAAAAGCTAAAGGAAGCTCGCAGAA
66 TGAGTCGATCATTGATTCCGCCAGCAGAGTGGATAGTGGGAAAAAGCTAAAGGAAGCTCGCAGAA
64017288 GGCTTGACTTTCACTATGCTAGGGAAGAAAGCTACTGGGCTCAAAGGTCTAGGTCGAGATGGCTT
131 GGCTTGACTTTCACTATGCTAGGGAAGAAAGCTACTGGGCTCAAAGGTCTAGGTCGAGATGGCTT
64017353 AGGGAGGGAGATCGAAATACTAGGTATTTCCATGCTAAAGCTACTGGTCGCCTGAAAAAGAACAA
196 AGGGAGGGAGATCGAAATACTAGGTATTTCCATGCTAAAGCTACTGGTCGCCTGAAAAAGAACAA
*
64017418 TATTGAGAGGATCAAAGATGTGGAAGGAAATTGGGTGATAAATAGTAAAGACATTTGTAAGGTGG
261 TATTGAGAGGATCAAAGATGTGGAAGGAAATTGGGTGACAAATAGTAAAGACATTTGTAAGGTGG
64017483 CTAAAGATTATTTTGTGAGTCTGTTCCGGGCAAACGGCCAAAATGTTGAAATCCAAGAGATGGGG
326 CTAAAGATTATTTTGTGAGTCTGTTCCGGGCAAACGGCCAAAATGTTGAAATCCAAGAGATGGGG
64017548 TACATGAAGGAGTGCGTGACGAGGGAAACAAATGAATGGCTCAATATGACCTATACAGAGGAAGA
391 TACATGAAGGAGTGCGTGACGAGGGAAACAAATGAATGGCTCAATATGACCTATACAGAGGAAGA
64017613 GGTTCTTCAAGCTATCAAGCAAAT
456 GGTTCTTCAAGCTATCAAGCAAAT
64017637 G
1 G
64017638 AACCCAAACA
Statistics
Matches: 479, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
479 479 1.00
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (479 bp):
GGTCCCTGGCAATGTCAGAAATTTGGGAAAATGAAGAGTGAAATGCGGAAATTGGAAAAACAGAT
TGAGTCGATCATTGATTCCGCCAGCAGAGTGGATAGTGGGAAAAAGCTAAAGGAAGCTCGCAGAA
GGCTTGACTTTCACTATGCTAGGGAAGAAAGCTACTGGGCTCAAAGGTCTAGGTCGAGATGGCTT
AGGGAGGGAGATCGAAATACTAGGTATTTCCATGCTAAAGCTACTGGTCGCCTGAAAAAGAACAA
TATTGAGAGGATCAAAGATGTGGAAGGAAATTGGGTGACAAATAGTAAAGACATTTGTAAGGTGG
CTAAAGATTATTTTGTGAGTCTGTTCCGGGCAAACGGCCAAAATGTTGAAATCCAAGAGATGGGG
TACATGAAGGAGTGCGTGACGAGGGAAACAAATGAATGGCTCAATATGACCTATACAGAGGAAGA
GGTTCTTCAAGCTATCAAGCAAAT
Found at i:64022400 original size:25 final size:23
Alignment explanation
Indices: 64022372--64022419 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
64022362 AATAAATCTG
*
64022372 TACATATATATATAAATAAAATAAT
1 TACATATATACAT-AA-AAAATAAT
*
64022397 TACATGTATACATAAAAAATAAT
1 TACATATATACATAAAAAATAAT
64022420 GATTACTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 8 0.38
24 2 0.10
25 11 0.52
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.33
Consensus pattern (23 bp):
TACATATATACATAAAAAATAAT
Found at i:64023426 original size:21 final size:21
Alignment explanation
Indices: 64023400--64023456 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
64023390 AATCATATCT
64023400 TCTAAGATTGTATATATCATA
1 TCTAAGATTGTATATATCATA
*
64023421 TCTAAGATTGCATATATCATA
1 TCTAAGATTGTATATATCATA
64023442 TCTAAGATTGTATAT
1 TCTAAGATTGTATAT
64023457 CTTCAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (21 bp):
TCTAAGATTGTATATATCATA
Found at i:64023435 original size:19 final size:20
Alignment explanation
Indices: 64023377--64023451 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 20
64023367 AAATTAAATC
* *
64023377 TCTAAGATTACAAAATCATA
1 TCTAAGATTGCAATATCATA
*
64023397 TCTTCTAAGATTGTATATATCATA
1 ---TCTAAGATTGCA-ATATCATA
64023421 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
64023442 TCTAAGATTG
1 TCTAAGATTG
64023452 TATATCTTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
21 30 0.64
23 10 0.21
24 7 0.15
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:64023708 original size:55 final size:55
Alignment explanation
Indices: 64023619--64023724 Score: 185
Period size: 55 Copynumber: 1.9 Consensus size: 55
64023609 TATACCACGA
* *
64023619 ACTGCTTCAAGCGTGTGCTCGAGTGGTTTGAGTCAAACGTAGAACCAGAAATAGT
1 ACTGCTTCAAGCGTGTGCTCGAGTGGTTTAAGTCAAACATAGAACCAGAAATAGT
*
64023674 ACTGCTTCGAGCGTGTGCTCGAGTGGTTTAAGTCAAACATAGAACCAGAAA
1 ACTGCTTCAAGCGTGTGCTCGAGTGGTTTAAGTCAAACATAGAACCAGAAA
64023725 CAGTTTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (55 bp):
ACTGCTTCAAGCGTGTGCTCGAGTGGTTTAAGTCAAACATAGAACCAGAAATAGT
Found at i:64024424 original size:56 final size:58
Alignment explanation
Indices: 64024363--64024472 Score: 161
Period size: 56 Copynumber: 1.9 Consensus size: 58
64024353 TTAATTTTGT
* *
64024363 TTTTCATTTTCGAGAAAACCACATTCATTT-CAAATGATT-TCATTTCTCCATTTTTA
1 TTTTCATTTTCGAAAAAACCACAATCATTTCCAAATGATTCTCATTTCTCCATTTTTA
* * *
64024419 TTTTCATTTTGGAAAAAACCATAATCATTTCCAAATGTTTCTCATTTCTCCATT
1 TTTTCATTTTCGAAAAAACCACAATCATTTCCAAATGATTCTCATTTCTCCATT
64024473 GTCACAATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 26 0.55
57 8 0.17
58 13 0.28
ACGTcount: A:0.29, C:0.20, G:0.05, T:0.45
Consensus pattern (58 bp):
TTTTCATTTTCGAAAAAACCACAATCATTTCCAAATGATTCTCATTTCTCCATTTTTA
Found at i:64032062 original size:17 final size:16
Alignment explanation
Indices: 64032029--64032058 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
64032019 TGCTAATTCA
64032029 AAATAATATATTTTTC
1 AAATAATATATTTTTC
64032045 AAAT-ATATATTTTT
1 AAATAATATATTTTT
64032059 TTCATTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
AAATAATATATTTTTC
Found at i:64033021 original size:26 final size:25
Alignment explanation
Indices: 64032990--64033044 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
64032980 CCCATTTTTT
* *
64032990 AATAAACACCAAAAAATTATTTTAAA
1 AATAAAAAACAAAAAA-TATTTTAAA
*
64033016 AATAAAAAATAAAAAATATTTTAAA
1 AATAAAAAACAAAAAATATTTTAAA
64033041 AATA
1 AATA
64033045 TTTTAACATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.27
Consensus pattern (25 bp):
AATAAAAAACAAAAAATATTTTAAA
Found at i:64033364 original size:18 final size:17
Alignment explanation
Indices: 64033333--64033368 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
64033323 AGGCCTTCCT
64033333 TTTATATAATAGTAGTA
1 TTTATATAATAGTAGTA
64033350 TTTATATATATAGTAGTA
1 TTTATATA-ATAGTAGTA
64033368 T
1 T
64033369 AGATACTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (17 bp):
TTTATATAATAGTAGTA
Found at i:64044746 original size:25 final size:25
Alignment explanation
Indices: 64044717--64044829 Score: 101
Period size: 25 Copynumber: 4.6 Consensus size: 25
64044707 ATTTTAGTGC
64044717 GCTCTCTGATTATTAGCACTTCAGT
1 GCTCTCTGATTATTAGCACTTCAGT
* *
64044742 ACTCTCTGATTATTAGCACGTT-GGT
1 GCTCTCTGATTATTAGCAC-TTCAGT
* * *
64044767 GCTTTCTGATTACTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACTTCAGT
* * *
64044792 GCTCTCCG--T-TTAGCACATCTGT
1 GCTCTCTGATTATTAGCACTTCAGT
64044814 GCTCTCTG-TTCATTAG
1 GCTCTCTGATT-ATTAG
64044830 TGCATAATAA
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
22 17 0.24
23 2 0.03
24 1 0.01
25 48 0.69
26 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.39
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACTTCAGT
Found at i:64046907 original size:27 final size:27
Alignment explanation
Indices: 64046845--64046897 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
64046835 GTAGAAAACT
* *
64046845 CTAAAGAAATCGTACTTATGGCGAACA
1 CTAAAGGAATCGTACTCATGGCGAACA
64046872 CTAAAGGAATCGTACTCATGGCGAAC
1 CTAAAGGAATCGTACTCATGGCGAAC
64046898 TATGAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
CTAAAGGAATCGTACTCATGGCGAACA
Found at i:64056868 original size:21 final size:22
Alignment explanation
Indices: 64056829--64056871 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
64056819 TAAATAAATG
64056829 TGTAATAAATATATGTATACATT
1 TGTAATAAATATA-GTATACATT
*
64056852 TGTAATTAATATA-TATACAT
1 TGTAATAAATATAGTATACAT
64056872 GCTTATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (22 bp):
TGTAATAAATATAGTATACATT
Found at i:64064011 original size:71 final size:70
Alignment explanation
Indices: 64063924--64064282 Score: 254
Period size: 71 Copynumber: 5.3 Consensus size: 70
64063914 CAACCTAAGT
* *
64063924 TCATTGAATTATGATCACGAACAATTTCTTTTGAGTTAGCTAATTTACGATCGCCACTACATTCT
1 TCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAATTTACGATC-CCACTACATTCT
64063989 AACAAC
65 AACAAC
* * *** * * * *
64063995 TCATTTATTTATGATCACGATTGATAT-TATTAAGGCTCA-CTAATTTACGAT--CA-TAGC---
1 TCATTGATTTACGATCACGAACAATTTCTTTTGA-G-TTAGCTAATTTACGATCCCACTA-CATT
**
64064052 CT-A-AGT
63 CTAACAAC
64064058 TCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAATTTACGATCGCCACTACATTCT
1 TCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAATTTACGATC-CCACTACATTCT
64064123 AACAAC
65 AACAAC
* * *** * * * *
64064129 TCATTTATTTATGATCACGATTGATAT-TATTAAGGCTCA-CTAATTTACGAT--CA-TAGC---
1 TCATTGATTTACGATCACGAACAATTTCTTTTGA-G-TTAGCTAATTTACGATCCCACTA-CATT
**
64064186 CT-A-AGT
63 CTAACAAC
* * *
64064192 TCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTGATTTACGATCACAACTGCATTCT
1 TCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAATTTACGATC-CCACTACATTCT
64064257 AACAAC
65 AACAAC
64064263 TCATTGATTTACGATCACGA
1 TCATTGATTTACGATCACGA
64064283 TTGATATTAT
Statistics
Matches: 213, Mismatches: 47, Indels: 56
0.67 0.15 0.18
Matches are distributed among these distances:
62 4 0.02
63 69 0.32
64 10 0.05
65 4 0.02
66 5 0.02
67 7 0.03
68 6 0.03
69 4 0.02
70 10 0.05
71 90 0.42
72 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (70 bp):
TCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAATTTACGATCCCACTACATTCTA
ACAAC
Found at i:64064489 original size:134 final size:134
Alignment explanation
Indices: 64063903--64064476 Score: 857
Period size: 134 Copynumber: 4.3 Consensus size: 134
64063893 TAGCTCGTTG
* * * * *
64063903 ATTTATGATCACAACCTAAGTTCATTGAATTATGATCACGAACAATTTCTTTTGAGTTAGCTAAT
1 ATTTACGATCATAGCCTAAGTTCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAAT
* * *
64063968 TTACGATCGCCACTACATTCTAACAACTCATTTATTTATGATCACGATTGATATTATTAAGGCTC
66 TTACGATCGCAACTACATTCTAACAACTCATTGATTTACGATCACGATTGATATTATTAAGGCTC
64064033 ACTA
131 ACTA
64064037 ATTTACGATCATAGCCTAAGTTCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAAT
1 ATTTACGATCATAGCCTAAGTTCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAAT
* * *
64064102 TTACGATCGCCACTACATTCTAACAACTCATTTATTTATGATCACGATTGATATTATTAAGGCTC
66 TTACGATCGCAACTACATTCTAACAACTCATTGATTTACGATCACGATTGATATTATTAAGGCTC
64064167 ACTA
131 ACTA
*
64064171 ATTTACGATCATAGCCTAAGTTCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTGAT
1 ATTTACGATCATAGCCTAAGTTCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAAT
* *
64064236 TTACGATCACAACTGCATTCTAACAACTCATTGATTTACGATCACGATTGATATTATTAAGGCTC
66 TTACGATCGCAACTACATTCTAACAACTCATTGATTTACGATCACGATTGATATTATTAAGGCTC
64064301 ACTA
131 ACTA
* *
64064305 ATTTACGATCATAGCCTAAGTTCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGTTGAT
1 ATTTACGATCATAGCCTAAGTTCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAAT
* *** * * * *
64064370 TTACGATCGCAACT-CTAATCTAATTGCTCACTGATTTACGATTAAG-TTCAATATTATTAAGGC
66 TTACGATCGCAACTAC-ATTCTAACAACTCATTGATTTACGATCACGATT-GATATTATTAAGGC
*
64064433 TCGA-TG
129 TC-ACTA
* *
64064439 ATTTACGATCACAGCTTAAGTTCATTGATTTACGATCA
1 ATTTACGATCATAGCCTAAGTTCATTGATTTACGATCA
64064477 TGAATGATTT
Statistics
Matches: 413, Mismatches: 24, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
133 3 0.01
134 409 0.99
135 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (134 bp):
ATTTACGATCATAGCCTAAGTTCATTGATTTACGATCACGAACAATTTCTTTTGAGTTAGCTAAT
TTACGATCGCAACTACATTCTAACAACTCATTGATTTACGATCACGATTGATATTATTAAGGCTC
ACTA
Found at i:64066080 original size:133 final size:134
Alignment explanation
Indices: 64065760--64066117 Score: 425
Period size: 134 Copynumber: 2.7 Consensus size: 134
64065750 TAAGGCTTGC
** * * **
64065760 TGATTTATTATCATGAAC-GATTTTATCTGAGTTAGCTGATTTACGATCGCAACGCCATTCAATT
1 TGATTTACGATCATGAACAG-TTTCATCTGAGTTAGCTGATTTACGATCGCAACTCCATTCAAAC
** * * * * *
64065824 AGCTCGCAGATTTATGATCACAACTGATATTATCAAGGCTCTTTGATTTCTGATCAAACCTTACG
65 AGCTCGTTGATTTACGATCACAACTGATATTATCAAGGCTCGTTAATTTATGATCAAACCTTAAG
64065889 TTCAT
130 TTCAT
* * * * *
64065894 TGATTTACGATCATGAAAATTTTCTTCTGAGATAGCTGATTTACGATCGCAACTCTATTCAAACA
1 TGATTTACGATCATGAACAGTTTCATCTGAGTTAGCTGATTTACGATCGCAACTCCATTCAAACA
* * * ** *
64065959 ACTTGTTGATTTACGATCACAATTGATATTATTGAGGCTCGTTAATTTAT-ATCACATCC-TAAG
66 GCTCGTTGATTTACGATCACAACTGATATTATCAAGGCTCGTTAATTTATGATCA-AACCTTAAG
64066022 TTCAT
130 TTCAT
* * *
64066027 TGATTTACGATCATGAACAGTTTCATCTGAGTTAGCGGATTTACGATTGCAACTCCATTCTAACA
1 TGATTTACGATCATGAACAGTTTCATCTGAGTTAGCTGATTTACGATCGCAACTCCATTCAAACA
*
64066092 GCTCGTTGACTTACGATCACAACTGA
66 GCTCGTTGATTTACGATCACAACTGA
64066118 ACTTAAAGGT
Statistics
Matches: 186, Mismatches: 36, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
133 91 0.49
134 95 0.51
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (134 bp):
TGATTTACGATCATGAACAGTTTCATCTGAGTTAGCTGATTTACGATCGCAACTCCATTCAAACA
GCTCGTTGATTTACGATCACAACTGATATTATCAAGGCTCGTTAATTTATGATCAAACCTTAAGT
TCAT
Found at i:64066282 original size:15 final size:16
Alignment explanation
Indices: 64066262--64066317 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 16
64066252 CACAAATTAG
64066262 AAATAA-AATAAGAAT
1 AAATAATAATAAGAAT
* *
64066277 AAATAA-AATTAG-TT
1 AAATAATAATAAGAAT
*
64066291 AAATAATAATAATAAT
1 AAATAATAATAAGAAT
64066307 -AATAATAATAA
1 AAATAATAATAA
64066318 NNNNNNNNNN
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 7 0.21
15 26 0.76
16 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.29
Consensus pattern (16 bp):
AAATAATAATAAGAAT
Found at i:64066300 original size:3 final size:3
Alignment explanation
Indices: 64066292--64066317 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
64066282 AAATTAGTTA
64066292 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
64066318 NNNNNNNNNN
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:64073366 original size:12 final size:12
Alignment explanation
Indices: 64073348--64073377 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
64073338 AGGTAGGCAA
64073348 CTTTTTTTTGCG
1 CTTTTTTTTGCG
*
64073360 GTTTTTTTTGCG
1 CTTTTTTTTGCG
64073372 CTTTTT
1 CTTTTT
64073378 GCTTTTTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.13, G:0.17, T:0.70
Consensus pattern (12 bp):
CTTTTTTTTGCG
Found at i:64077013 original size:15 final size:16
Alignment explanation
Indices: 64076983--64077018 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
64076973 ATATAATAAA
*
64076983 TATTTTTATTATTTTT
1 TATTTTTATTAATTTT
64076999 TATTTTT-TTAATTTT
1 TATTTTTATTAATTTT
64077014 TATTT
1 TATTT
64077019 AAAAAACGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TATTTTTATTAATTTT
Found at i:64078073 original size:18 final size:18
Alignment explanation
Indices: 64078050--64078084 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64078040 TAAATTTGTT
* *
64078050 ATTATATCAATAAAAAAG
1 ATTATACCAACAAAAAAG
64078068 ATTATACCAACAAAAAA
1 ATTATACCAACAAAAAA
64078085 TCAAATTTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.11, G:0.03, T:0.23
Consensus pattern (18 bp):
ATTATACCAACAAAAAAG
Found at i:64088561 original size:50 final size:50
Alignment explanation
Indices: 64088375--64088562 Score: 232
Period size: 50 Copynumber: 3.8 Consensus size: 50
64088365 CAATGTCATA
* ** * * * *
64088375 TCCCAGATATGGTCTTACATGGGAGTTCTCATATCGATGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
** ** * *
64088425 TCCCAGACACAGTCTTACGGGGGACCTCTCATCTCTGTGCCAACTCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
*
64088475 TCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* *
64088525 TCTCAAACATGGTCTTACATGGGACCTCTCATCTCGGT
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGT
64088563 TGACATGGAT
Statistics
Matches: 115, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 115 1.00
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
Found at i:64088641 original size:44 final size:44
Alignment explanation
Indices: 64088577--64088675 Score: 171
Period size: 44 Copynumber: 2.2 Consensus size: 44
64088567 ATGGATCAAC
* *
64088577 CATGGTACTTTTTCGTCAATTCTTTCTTAATTGCCATGTTATAAA
1 CATGG-ACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
64088622 CATGGACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
1 CATGGACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
64088666 CATGGACTTT
1 CATGGACTTT
64088676 GAGATATCAA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
44 47 0.90
45 5 0.10
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.43
Consensus pattern (44 bp):
CATGGACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
Found at i:64094673 original size:14 final size:14
Alignment explanation
Indices: 64094654--64094683 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
64094644 ATTCAACTAA
*
64094654 ACTAAAATGATTAT
1 ACTAAAATGATCAT
64094668 ACTAAAATGATCAT
1 ACTAAAATGATCAT
64094682 AC
1 AC
64094684 ATACTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (14 bp):
ACTAAAATGATCAT
Found at i:64098571 original size:2 final size:2
Alignment explanation
Indices: 64098564--64098602 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
64098554 CAACAGTATG
64098564 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
64098603 ATTTGCTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:64108002 original size:21 final size:21
Alignment explanation
Indices: 64107965--64108018 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
64107955 TTTTATTTTT
*
64107965 TTTAAAA-TTTTGTAT-AAAC
1 TTTAAAACTTTTTTATAAAAC
64107984 TTTAAAACTTTTTTAATAAAAC
1 TTTAAAACTTTTTT-ATAAAAC
* *
64108006 TTTTAAACATTTT
1 TTTAAAACTTTTT
64108019 CATATTTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 7 0.24
20 5 0.17
21 2 0.07
22 15 0.52
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (21 bp):
TTTAAAACTTTTTTATAAAAC
Found at i:64110761 original size:19 final size:19
Alignment explanation
Indices: 64110727--64110778 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
64110717 ATTTTTGAGA
* * *
64110727 AAATTAAATTTGATCAAGT
1 AAATTAAAATTAATCAAAT
*
64110746 AAATTTAAATTAATCAAAT
1 AAATTAAAATTAATCAAAT
*
64110765 TAATTAAAATTAAT
1 AAATTAAAATTAAT
64110779 ATGATATTTC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (19 bp):
AAATTAAAATTAATCAAAT
Found at i:64111212 original size:38 final size:37
Alignment explanation
Indices: 64111138--64111212 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
64111128 AACTATTTAA
* *
64111138 AAAATAATATTATTTTAATAGATTTAATATTAAATTT
1 AAAATAATATTATGTTAATAAATTTAATATTAAATTT
*
64111175 AAAATAATATTTATGTTGATAAATATT-ATATTAAATTT
1 AAAATAATA-TTATGTTAATAAAT-TTAATATTAAATTT
64111213 CATATTAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 9 0.27
38 22 0.67
39 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (37 bp):
AAAATAATATTATGTTAATAAATTTAATATTAAATTT
Found at i:64114682 original size:25 final size:26
Alignment explanation
Indices: 64114619--64114682 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
64114609 GATATCTAGG
*
64114619 AAGCCTTTGTGGCTAATCTTGTGGAA
1 AAGCCTTTGTGGCTAATATTGTGGAA
*
64114645 AAACCTTTGTGGCTAATATTGTGG-A
1 AAGCCTTTGTGGCTAATATTGTGGAA
64114670 AAGCCTTTGTGGC
1 AAGCCTTTGTGGC
64114683 GTGTTATCTG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
25 13 0.37
26 22 0.63
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (26 bp):
AAGCCTTTGTGGCTAATATTGTGGAA
Found at i:64114694 original size:25 final size:24
Alignment explanation
Indices: 64114593--64114696 Score: 75
Period size: 25 Copynumber: 4.1 Consensus size: 24
64114583 ATTCCCTAGA
* *
64114593 AAAGCCTTTGTGGTGTGATATCTAGG
1 AAAGCCTTTGTGG-CTAATATCT-GG
* *
64114619 -AAGCCTTTGTGGCTAATCTTGTGG
1 AAAGCCTTTGTGGCTAAT-ATCTGG
* *
64114643 AAAAACCTTTGTGGCTAATATTGTGG
1 -AAAGCCTTTGTGGCTAATA-TCTGG
**
64114669 AAAGCCTTTGTGGCGTGTTATCTGG
1 AAAGCCTTTGTGGC-TAATATCTGG
64114694 AAA
1 AAA
64114697 ATCTATAAAG
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
24 5 0.08
25 34 0.54
26 24 0.38
ACGTcount: A:0.24, C:0.13, G:0.28, T:0.35
Consensus pattern (24 bp):
AAAGCCTTTGTGGCTAATATCTGG
Found at i:64133446 original size:33 final size:33
Alignment explanation
Indices: 64133404--64133467 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
64133394 TGAAAATTGG
64133404 CATTGCCTGTTATCTTGGGATTATTTTAGCTTT
1 CATTGCCTGTTATCTTGGGATTATTTTAGCTTT
*
64133437 CATTGCCTGTTATCTTGGGTTTATTTTAGCT
1 CATTGCCTGTTATCTTGGGATTATTTTAGCT
64133468 AGTTCATGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.52
Consensus pattern (33 bp):
CATTGCCTGTTATCTTGGGATTATTTTAGCTTT
Found at i:64141351 original size:6 final size:7
Alignment explanation
Indices: 64141337--64141362 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
64141327 TGAAATTGAA
64141337 TTAATTT
1 TTAATTT
64141344 TTAATTT
1 TTAATTT
64141351 TTAATTT
1 TTAATTT
64141358 TTAAT
1 TTAAT
64141363 ATATAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TTAATTT
Found at i:64141924 original size:18 final size:19
Alignment explanation
Indices: 64141903--64141938 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
64141893 AAAATAAACT
64141903 AGAAA-TATCAAAAGAACG
1 AGAAATTATCAAAAGAACG
64141921 AGAAATTATCAAAAGAAC
1 AGAAATTATCAAAAGAAC
64141939 TTTTTGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.61, C:0.11, G:0.14, T:0.14
Consensus pattern (19 bp):
AGAAATTATCAAAAGAACG
Found at i:64164056 original size:12 final size:12
Alignment explanation
Indices: 64164039--64164064 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64164029 GCTAGTGAAA
64164039 ATCATCGAAAAT
1 ATCATCGAAAAT
64164051 ATCATCGAAAAT
1 ATCATCGAAAAT
64164063 AT
1 AT
64164065 AGCAATTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.15, G:0.08, T:0.27
Consensus pattern (12 bp):
ATCATCGAAAAT
Found at i:64164941 original size:11 final size:11
Alignment explanation
Indices: 64164925--64164949 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
64164915 TAATATATTT
64164925 TTTTAATAATA
1 TTTTAATAATA
64164936 TTTTAATAATA
1 TTTTAATAATA
64164947 TTT
1 TTT
64164950 ATATATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAATAATA
Found at i:64165014 original size:46 final size:46
Alignment explanation
Indices: 64164964--64165099 Score: 126
Period size: 46 Copynumber: 3.1 Consensus size: 46
64164954 ATATTTATGA
64164964 CTTAACCCACAAATTGGTATTTAAACTATACTCTTTTTTCTTATCT
1 CTTAACCCACAAATTGGTATTTAAACTATACTCTTTTTTCTTATCT
* * * * * * * **
64165010 CTTAA---ACTAA-T-AT-TTTAAAATAT-TTATATATAT-TTATGA
1 CTTAACCCACAAATTGGTATTTAAACTATACTCT-TTTTTCTTATCT
64165049 CTTAACCCACAAATTGGTATTTAAACTATACTCTTTTTTCTTATCT
1 CTTAACCCACAAATTGGTATTTAAACTATACTCTTTTTTCTTATCT
64165095 CTTAA
1 CTTAA
64165100 ACTTTTTTTG
Statistics
Matches: 63, Mismatches: 18, Indels: 18
0.64 0.18 0.18
Matches are distributed among these distances:
39 11 0.17
40 12 0.19
41 1 0.02
42 5 0.08
43 5 0.08
44 1 0.02
45 12 0.19
46 16 0.25
ACGTcount: A:0.33, C:0.17, G:0.04, T:0.46
Consensus pattern (46 bp):
CTTAACCCACAAATTGGTATTTAAACTATACTCTTTTTTCTTATCT
Found at i:64165038 original size:85 final size:86
Alignment explanation
Indices: 64164931--64165102 Score: 337
Period size: 85 Copynumber: 2.0 Consensus size: 86
64164921 ATTTTTTTAA
64164931 TAATATTTTAATAATATTTATATATATTTATGACTTAACCCACAAATTGGTATTTAAACTATACT
1 TAATATTTTAATAATATTTATATATATTTATGACTTAACCCACAAATTGGTATTTAAACTATACT
64164996 CTTTTTTCTTATCTCTTAAAC
66 CTTTTTTCTTATCTCTTAAAC
64165017 TAATATTTTAA-AATATTTATATATATTTATGACTTAACCCACAAATTGGTATTTAAACTATACT
1 TAATATTTTAATAATATTTATATATATTTATGACTTAACCCACAAATTGGTATTTAAACTATACT
64165081 CTTTTTTCTTATCTCTTAAAC
66 CTTTTTTCTTATCTCTTAAAC
64165102 T
1 T
64165103 TTTTTTGGTT
Statistics
Matches: 86, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 75 0.87
86 11 0.13
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.48
Consensus pattern (86 bp):
TAATATTTTAATAATATTTATATATATTTATGACTTAACCCACAAATTGGTATTTAAACTATACT
CTTTTTTCTTATCTCTTAAAC
Found at i:64167393 original size:49 final size:49
Alignment explanation
Indices: 64167337--64167431 Score: 147
Period size: 49 Copynumber: 1.9 Consensus size: 49
64167327 GAAAGGATAT
64167337 ATCTTAGAAATAAACG-AGTGCATAAAGAAAAGGTAGCTAAATTGGTTAC
1 ATCTTAGAAATAAACGTA-TGCATAAAGAAAAGGTAGCTAAATTGGTTAC
** *
64167386 ATCTTAGAAATAAGTGTATGCATAAAGAAAAGGTGGCTAAATTGGT
1 ATCTTAGAAATAAACGTATGCATAAAGAAAAGGTAGCTAAATTGGT
64167432 ATTTCTCTGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
49 41 0.98
50 1 0.02
ACGTcount: A:0.43, C:0.08, G:0.22, T:0.26
Consensus pattern (49 bp):
ATCTTAGAAATAAACGTATGCATAAAGAAAAGGTAGCTAAATTGGTTAC
Found at i:64167622 original size:52 final size:53
Alignment explanation
Indices: 64167519--64167625 Score: 164
Period size: 52 Copynumber: 2.0 Consensus size: 53
64167509 CAAGAGAGAT
*
64167519 ATAGTTTAGATGCTAAGTAAAGTTGAAAAAGAAACAATGCAACTCTTATGCTG
1 ATAGTTTAAATGCTAAGTAAAGTTGAAAAAGAAACAATGCAACTCTTATGCTG
* *
64167572 ATAGTTTAAATGCTAAGTAGAGTTG-GAAAG-AACAAATGCAACTCTTATGCTG
1 ATAGTTTAAATGCTAAGTAAAGTTGAAAAAGAAAC-AATGCAACTCTTATGCTG
64167624 AT
1 AT
64167626 GAATTTCAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
51 3 0.06
52 24 0.48
53 23 0.46
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (53 bp):
ATAGTTTAAATGCTAAGTAAAGTTGAAAAAGAAACAATGCAACTCTTATGCTG
Found at i:64169693 original size:19 final size:20
Alignment explanation
Indices: 64169669--64169712 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
64169659 TTTTTGCTTC
64169669 TTCTTCT-CGTACGTTTCTT
1 TTCTTCTACGTACGTTTCTT
**
64169688 TTCTTCTATTTACGTTTCTT
1 TTCTTCTACGTACGTTTCTT
64169708 TTCTT
1 TTCTT
64169713 TTCTCCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.07, C:0.23, G:0.07, T:0.64
Consensus pattern (20 bp):
TTCTTCTACGTACGTTTCTT
Found at i:64170706 original size:78 final size:78
Alignment explanation
Indices: 64170585--64170728 Score: 198
Period size: 78 Copynumber: 1.8 Consensus size: 78
64170575 GTGTTGCTAT
* * *
64170585 CTTACCAAAGGAAGCGAAGCCAAATAAGATAGAATCACCATTGCGAATTCAGTCCTCATTAACCC
1 CTTACCAAAGGAAGCGAAGCCAAATAAGATAGAATCACAATTGCAAATTCACTCCTCATTAACCC
64170650 CGAGTGTCACTGC
66 CGAGTGTCACTGC
* * * * * **
64170663 CTTATCAATGGAAGCTAAGCCAATTAAGTTAGAATCACAATTGCAAATTCACTCCTTGTTAACCC
1 CTTACCAAAGGAAGCGAAGCCAAATAAGATAGAATCACAATTGCAAATTCACTCCTCATTAACCC
64170728 C
66 C
64170729 TTGGCTGATA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
78 56 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (78 bp):
CTTACCAAAGGAAGCGAAGCCAAATAAGATAGAATCACAATTGCAAATTCACTCCTCATTAACCC
CGAGTGTCACTGC
Found at i:64174806 original size:49 final size:49
Alignment explanation
Indices: 64174749--64174852 Score: 181
Period size: 49 Copynumber: 2.1 Consensus size: 49
64174739 TCATGTGTTA
* * *
64174749 TAATTTTATAAAGTGTTGAGCTTTTGATTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
64174798 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
64174847 TAATTT
1 TAATTT
64174853 GTTTTTTTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.50
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:64177476 original size:18 final size:18
Alignment explanation
Indices: 64177423--64177476 Score: 65
Period size: 17 Copynumber: 3.0 Consensus size: 18
64177413 GATGTAGATA
* *
64177423 AAAATATTAAATTTAAGTA
1 AAAATA-TAAATTTAATTT
*
64177442 AAAATTTAAATTT-ATTT
1 AAAATATAAATTTAATTT
64177459 AAAATATAAATTTAATTT
1 AAAATATAAATTTAATTT
64177477 GAACTTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 14 0.47
18 11 0.37
19 5 0.17
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AAAATATAAATTTAATTT
Found at i:64178486 original size:19 final size:19
Alignment explanation
Indices: 64178462--64178573 Score: 75
Period size: 19 Copynumber: 5.9 Consensus size: 19
64178452 TGCAAACTCT
64178462 TTTTTACAATTTTATATAA
1 TTTTTACAATTTTATATAA
** * *
64178481 TTTTTACTTTTTTTTGTAA
1 TTTTTACAATTTTATATAA
* * * *
64178500 TTTCTATAATTTTTTATAC
1 TTTTTACAATTTTATATAA
** *
64178519 TTTTTGTAATTTTGTA-AA
1 TTTTTACAATTTTATATAA
* * *
64178537 ATTTTGCAATTTTATATTA
1 TTTTTACAATTTTATATAA
64178556 TTTTTA-ATATTTTATATA
1 TTTTTACA-ATTTTATATA
64178574 TTTCTTAAAA
Statistics
Matches: 70, Mismatches: 21, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
18 15 0.21
19 55 0.79
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTTACAATTTTATATAA
Found at i:64178581 original size:19 final size:19
Alignment explanation
Indices: 64178545--64178581 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
64178535 AAATTTTGCA
64178545 ATTTTATATTATTTTTAAT
1 ATTTTATATTATTTTTAAT
64178564 ATTTTATA-TATTTCTTAA
1 ATTTTATATTATTT-TTAA
64178582 AATTCTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTTTATATTATTTTTAAT
Found at i:64179986 original size:37 final size:34
Alignment explanation
Indices: 64179927--64180010 Score: 100
Period size: 38 Copynumber: 2.4 Consensus size: 34
64179917 ATGCAACATG
64179927 ACATGTTATAAC-AAATTAATACAGTAGCAA-TA
1 ACATGTTATAACAAAATTAATACAGTAGCAATTA
64179959 ACATGTTTATAACAAATATATATATACAGTAGCAATTA
1 ACATG-TTATAACAAA-AT-TA-ATACAGTAGCAATTA
*
64179997 TCATGCTTATAACA
1 ACATG-TTATAACA
64180011 GATCATGACA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
32 5 0.11
33 7 0.16
34 2 0.05
35 2 0.05
36 2 0.05
37 12 0.27
38 14 0.32
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.32
Consensus pattern (34 bp):
ACATGTTATAACAAAATTAATACAGTAGCAATTA
Found at i:64182244 original size:97 final size:97
Alignment explanation
Indices: 64182113--64182313 Score: 267
Period size: 97 Copynumber: 2.1 Consensus size: 97
64182103 ACTGGATTGG
* * * ** * *
64182113 GGAGTCGTGGATCTATTACGGAGAGGTTCCGATTGAATATGGTGGAAATATTTAAAGATGTTTTT
1 GGAGTCGTAGATCTATTACGGAGAGGCTCCGATTGAATAGGGAAGAAATATTTAAAGATATTGTT
* * *
64182178 GGAACGACGCCTACTGTGGTCGAGTGCTGGAT
66 GGAACGACGCCTACTGTGGCCAAGTACTGGAT
* * * *
64182210 GGAGTCGTAGATCTATTATGGAGAGGCTCTGATTGAATGGGGAAGAAATATTTAAAGGTATTGTT
1 GGAGTCGTAGATCTATTACGGAGAGGCTCCGATTGAATAGGGAAGAAATATTTAAAGATATTGTT
*
64182275 GGAACGACTCCTACTGTGGCCAAGTACTGGAT
66 GGAACGACGCCTACTGTGGCCAAGTACTGGAT
64182307 GGAGTCG
1 GGAGTCG
64182314 ACGGAGAGGA
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
97 89 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.29
Consensus pattern (97 bp):
GGAGTCGTAGATCTATTACGGAGAGGCTCCGATTGAATAGGGAAGAAATATTTAAAGATATTGTT
GGAACGACGCCTACTGTGGCCAAGTACTGGAT
Found at i:64183271 original size:34 final size:33
Alignment explanation
Indices: 64183227--64183323 Score: 131
Period size: 34 Copynumber: 2.8 Consensus size: 33
64183217 ATACAATATG
64183227 ACATGCTTATAACATATCAATAAGATAGCAATTA
1 ACATGCTTATAACATATCAATAAG-TAGCAATTA
* *
64183261 GCATGCTTATAACAAATCAATATAGTAGCAATTA
1 ACATGCTTATAACATATCAATA-AGTAGCAATTA
* *
64183295 ATATGCTTATAACATATAAATAAAGTAGC
1 ACATGCTTATAACATATCAAT-AAGTAGC
64183324 TATAGACACC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
34 52 0.95
35 3 0.05
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.30
Consensus pattern (33 bp):
ACATGCTTATAACATATCAATAAGTAGCAATTA
Found at i:64183499 original size:12 final size:12
Alignment explanation
Indices: 64183482--64183506 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64183472 TAAGCAAGAT
64183482 TGAAAAGTAGTA
1 TGAAAAGTAGTA
64183494 TGAAAAGTAGTA
1 TGAAAAGTAGTA
64183506 T
1 T
64183507 ATATACATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28
Consensus pattern (12 bp):
TGAAAAGTAGTA
Found at i:64186157 original size:92 final size:91
Alignment explanation
Indices: 64186037--64186222 Score: 239
Period size: 92 Copynumber: 2.0 Consensus size: 91
64186027 TGATAAAAAT
* * *
64186037 ATATTGATGGATGAATCATTTGTCTGTGCAGATAAAAGCTACT-AATACGTTGTGGATGACCCAC
1 ATATTGATGGATGAACCATTCGTCTGTGCAGATAAAAG-TACTCAATACGTTGTGGATGAACCAC
*
64186101 TAGTCAAACAGATAAACTTCTGACTAAA
65 TAGTCAAACAGAT-AACTACTGACTAAA
* * * **
64186129 ATATTGGTGGATGAACCATTCGTTTGTGCATATAAAAGTTGTCAATACGTTGTGGATGAACCACT
1 ATATTGATGGATGAACCATTCGTCTGTGCAGATAAAAGTACTCAATACGTTGTGGATGAACCACT
* * *
64186194 GGTTAAACAGATGACTACTGACTAAA
66 AGTCAAACAGATAACTACTGACTAAA
64186220 ATA
1 ATA
64186223 CGTAGTGAAT
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
91 17 0.21
92 64 0.79
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (91 bp):
ATATTGATGGATGAACCATTCGTCTGTGCAGATAAAAGTACTCAATACGTTGTGGATGAACCACT
AGTCAAACAGATAACTACTGACTAAA
Found at i:64188872 original size:14 final size:14
Alignment explanation
Indices: 64188855--64188884 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
64188845 AATTAACTTG
64188855 ACATAGTTAACAAT
1 ACATAGTTAACAAT
64188869 ACATAGTTAACAAT
1 ACATAGTTAACAAT
64188883 AC
1 AC
64188885 CTTGACACGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.27
Consensus pattern (14 bp):
ACATAGTTAACAAT
Found at i:64188953 original size:2 final size:2
Alignment explanation
Indices: 64188906--64188940 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
64188896 TCTATTTTCC
*
64188906 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
64188941 AACAAGGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:64190448 original size:16 final size:17
Alignment explanation
Indices: 64190437--64190468 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64190427 AATAATATTT
64190437 TTAAT-TTTTAATTTTA
1 TTAATATTTTAATTTTA
64190453 TTAATATTTT-ATTTTA
1 TTAATATTTTAATTTTA
64190469 ATTTAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTAATATTTTAATTTTA
Found at i:64190483 original size:27 final size:28
Alignment explanation
Indices: 64190453--64190518 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
64190443 TTTAATTTTA
64190453 TTAATATTTTATTTT-AATT-TAATTAAG
1 TTAATATTTTATTTTAAATTCT-ATTAAG
*
64190480 TTAATCA-ATTATTTTAAATTCTATTAAG
1 TTAAT-ATTTTATTTTAAATTCTATTAAG
* *
64190508 ATAATTTTTTA
1 TTAATATTTTA
64190519 GGATAATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
27 12 0.39
28 18 0.58
29 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (28 bp):
TTAATATTTTATTTTAAATTCTATTAAG
Found at i:64201305 original size:198 final size:198
Alignment explanation
Indices: 64200936--64201310 Score: 449
Period size: 198 Copynumber: 1.9 Consensus size: 198
64200926 TAATGGTCTA
* * *
64200936 CTGCACACTCACAAAGTATATTAGCTCATATTTAGGCCTCATTCGGCCCCTAAAGTCAATAAAAG
1 CTGCACACTCACAAAGCATATTAGCTCACACTTAGGCCTCATTCGGCCCCTAAAGTCAATAAAAG
* * ** ** **
64201001 ACTCAAATTACACATTTTATTACACTTAACTGAACTTGTTGAAATGTAATTAAACACAACTAAAA
66 ACTCAAATTACACAGTTTATTACACTTAAATGAAAGTAATGAAATGTAACCAAACACAACTAAAA
* * *
64201066 TGCTTATGTTCAACTTCCTAAAGTGCAAAAATTAATTTAATCTGCTATACCAAATTACGGCAGAT
131 TGCTTATATTCAACTTCCTAAAGTACAAAAACTAATTTAATCTGCTATACCAAATTACGGCAGAT
64201131 CAC
196 CAC
* *
64201134 CTGCACACTCACAAAGCATATTAGCTCACGCTTAGGCCTCATTCGGCCCCTAAGGTCAATAAAAG
1 CTGCACACTCACAAAGCATATTAGCTCACACTTAGGCCTCATTCGGCCCCTAAAGTCAATAAAAG
*
64201199 ACTCAAATTAC-CAGTTTATTGA-ATTTAAAT-AAAGTAATGAAACCT-TAACCAAA-ATCTAAC
66 ACTCAAATTACACAGTTTATT-ACACTTAAATGAAAGTAATGAAA--TGTAACCAAACA-C-AAC
* * * *
64201259 TAAAGTGCTTGTATTCAAGC-TCCTCAAA-TACGAAAACTAGTTTAATCTGCTA
126 TAAAATGCTTATATTCAA-CTTCCT-AAAGTACAAAAACTAATTTAATCTGCTA
64201311 CATCGAATTA
Statistics
Matches: 149, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
196 9 0.06
197 21 0.14
198 115 0.77
199 4 0.03
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (198 bp):
CTGCACACTCACAAAGCATATTAGCTCACACTTAGGCCTCATTCGGCCCCTAAAGTCAATAAAAG
ACTCAAATTACACAGTTTATTACACTTAAATGAAAGTAATGAAATGTAACCAAACACAACTAAAA
TGCTTATATTCAACTTCCTAAAGTACAAAAACTAATTTAATCTGCTATACCAAATTACGGCAGAT
CAC
Found at i:64212838 original size:20 final size:20
Alignment explanation
Indices: 64212798--64212853 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
64212788 TTTTTCTCTC
*
64212798 ATTTTCTCTCTTGCCAAACACA
1 ATTTTCT-TCTT-CAAAACACA
*
64212820 ATTTTCTTCTTCAAAACACC
1 ATTTTCTTCTTCAAAACACA
*
64212840 ATTCTTCATCTTCA
1 ATT-TTCTTCTTCA
64212854 CTACCAAACC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.33
21 13 0.43
22 7 0.23
ACGTcount: A:0.27, C:0.30, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTTCTTCTTCAAAACACA
Found at i:64212853 original size:21 final size:20
Alignment explanation
Indices: 64212813--64212853 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
64212803 CTCTCTTGCC
*
64212813 AAACACAATTTTCTTCTTCA
1 AAACACAATTTTCATCTTCA
*
64212833 AAACACCATTCTTCATCTTCA
1 AAACACAATT-TTCATCTTCA
64212854 CTACCAAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACACAATTTTCATCTTCA
Found at i:64216935 original size:13 final size:13
Alignment explanation
Indices: 64216917--64216941 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64216907 ATCCAAGTAA
64216917 AAATATAGATTTT
1 AAATATAGATTTT
64216930 AAATATAGATTT
1 AAATATAGATTT
64216942 GGATAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
AAATATAGATTTT
Found at i:64220378 original size:57 final size:59
Alignment explanation
Indices: 64220317--64220439 Score: 153
Period size: 59 Copynumber: 2.1 Consensus size: 59
64220307 TGTCGACAGG
* * *
64220317 TAAAAAAGTAA-T-TTTTTTGTGGT-GTCGTGTTGTCTAGCAACATTGGCGTCAGATAGT
1 TAAAAAAGTAATTCTTTTTTGT-GTCATCATGTTGTCTAGCAACACTGGCGTCAGATAGT
* * * *
64220374 TAAAAAAGTAATTCTTTTTTGTGTCATCATGTTGTCTGGCGACACTGGTGTTAGATAGT
1 TAAAAAAGTAATTCTTTTTTGTGTCATCATGTTGTCTAGCAACACTGGCGTCAGATAGT
64220433 TAAAAAA
1 TAAAAAA
64220440 AAATTGTGTT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
57 11 0.20
58 3 0.05
59 42 0.75
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (59 bp):
TAAAAAAGTAATTCTTTTTTGTGTCATCATGTTGTCTAGCAACACTGGCGTCAGATAGT
Found at i:64223266 original size:29 final size:29
Alignment explanation
Indices: 64223177--64223268 Score: 116
Period size: 29 Copynumber: 3.2 Consensus size: 29
64223167 ATTTGTGTAT
*
64223177 TTTGGTATATTTTTGTTTTGAAGATTATG
1 TTTGGTATATTTATGTTTTGAAGATTATG
* * **
64223206 TTTGGTATA-TGATGTTTTGTA-ATGGTG
1 TTTGGTATATTTATGTTTTGAAGATTATG
64223233 CTTTGGTATATTTATGTTTTGAAGATTATG
1 -TTTGGTATATTTATGTTTTGAAGATTATG
64223263 TTTGGT
1 TTTGGT
64223269 TGATGGACTT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
27 4 0.08
28 18 0.35
29 25 0.49
30 4 0.08
ACGTcount: A:0.20, C:0.01, G:0.24, T:0.55
Consensus pattern (29 bp):
TTTGGTATATTTATGTTTTGAAGATTATG
Found at i:64225137 original size:15 final size:15
Alignment explanation
Indices: 64225099--64225138 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
64225089 GTGGTTGCTG
*
64225099 TGAATCCTACAAATC
1 TGAATCCTGCAAATC
* *
64225114 TGAATCCTGTAAATT
1 TGAATCCTGCAAATC
64225129 TGAATCCTGC
1 TGAATCCTGC
64225139 TGAATCGAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (15 bp):
TGAATCCTGCAAATC
Found at i:64226208 original size:16 final size:17
Alignment explanation
Indices: 64226187--64226219 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
64226177 ATGTCTAGGT
64226187 AAATT-ATTAATTGAGA
1 AAATTAATTAATTGAGA
64226203 AAATTAAATTAATTGAG
1 AAATT-AATTAATTGAG
64226220 GGGTTAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
18 10 0.67
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
AAATTAATTAATTGAGA
Found at i:64227494 original size:46 final size:46
Alignment explanation
Indices: 64227427--64227588 Score: 267
Period size: 46 Copynumber: 3.6 Consensus size: 46
64227417 TTTGAGTACT
64227427 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
64227473 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
64227519 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAACTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
64227564 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
64227589 ATCATACGTA
Statistics
Matches: 111, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
43 12 0.11
44 5 0.05
45 18 0.16
46 76 0.68
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:64227615 original size:18 final size:18
Alignment explanation
Indices: 64227592--64227628 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
64227582 ATAAGTGATC
64227592 ATACGTAAGACCATAGTT
1 ATACGTAAGACCATAGTT
64227610 ATACGTAAGACCATAGTT
1 ATACGTAAGACCATAGTT
64227628 A
1 A
64227629 CACTATGACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (18 bp):
ATACGTAAGACCATAGTT
Found at i:64233125 original size:24 final size:24
Alignment explanation
Indices: 64233077--64233126 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
64233067 AAAGAATTAT
*
64233077 TAATTTAAAATGAAAAACTTAAAA
1 TAATTTAAAATGAAAAACATAAAA
64233101 TAATTTGAAAAT-AAAAA-ATACAAA
1 TAATTT-AAAATGAAAAACATA-AAA
64233125 TA
1 TA
64233127 TTAATAAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 2 0.09
24 16 0.70
25 5 0.22
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (24 bp):
TAATTTAAAATGAAAAACATAAAA
Found at i:64233653 original size:6 final size:6
Alignment explanation
Indices: 64233642--64233671 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
64233632 ATCCAGAGTT
*
64233642 CCGAAC CCGAAC CCGAAC CCGAAC TCGAAC
1 CCGAAC CCGAAC CCGAAC CCGAAC CCGAAC
64233672 AGATAAGTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.33, C:0.47, G:0.17, T:0.03
Consensus pattern (6 bp):
CCGAAC
Found at i:64241108 original size:3 final size:3
Alignment explanation
Indices: 64241030--64241096 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
64241020 GATGATGATG
64241030 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
64241078 ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
64241097 AGTTAATAAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:64241249 original size:7 final size:7
Alignment explanation
Indices: 64241237--64241261 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
64241227 TTGTTTGAAT
64241237 AATTTTA
1 AATTTTA
64241244 AATTTTA
1 AATTTTA
64241251 AATTTTA
1 AATTTTA
64241258 AATT
1 AATT
64241262 ATTTTAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
AATTTTA
Found at i:64247906 original size:29 final size:29
Alignment explanation
Indices: 64247862--64247917 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
64247852 TAGCTATTTG
* *
64247862 AACTAATTAATTACATTGTAAAAATATTA
1 AACTAATTAATAACATTATAAAAATATTA
64247891 AACTAATTAATAACATTATAAAAATAT
1 AACTAATTAATAACATTATAAAAATAT
64247918 AGAGACCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (29 bp):
AACTAATTAATAACATTATAAAAATATTA
Found at i:64264547 original size:73 final size:74
Alignment explanation
Indices: 64264458--64264605 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 74
64264448 GTAATCACGT
64264458 AAATATTCAATAATAAAATATATTATTTTTAAAAAATATTTTGATACTAATTTTTAAAAACATTC
1 AAATATTCAATAATAAAATATATTATTTTTAAAAAATATTTTGATACTAATTTTTAAAAACATTC
64264523 ATTTTTAAA
66 ATTTTTAAA
64264532 AAATATTCAAT-ATAAAATATATTATTTTTAAAAAATATTTTGATACTAATTTTTAAAAACATTC
1 AAATATTCAATAATAAAATATATTATTTTTAAAAAATATTTTGATACTAATTTTTAAAAACATTC
64264596 ATTTTTAAA
66 ATTTTTAAA
64264605 A
1 A
64264606 TAGAAATAAT
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 63 0.85
74 11 0.15
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (74 bp):
AAATATTCAATAATAAAATATATTATTTTTAAAAAATATTTTGATACTAATTTTTAAAAACATTC
ATTTTTAAA
Found at i:64264563 original size:16 final size:17
Alignment explanation
Indices: 64264507--64264570 Score: 71
Period size: 16 Copynumber: 3.9 Consensus size: 17
64264497 TTTGATACTA
*
64264507 ATTTTT-AAAAACATTC
1 ATTTTTAAAAAATATTC
64264523 ATTTTTAAAAAATATTC
1 ATTTTTAAAAAATATTC
* * *
64264540 A-ATATAAAATATATT-
1 ATTTTTAAAAAATATTC
64264555 ATTTTTAAAAAATATT
1 ATTTTTAAAAAATATT
64264571 TTGATACTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
15 1 0.03
16 28 0.72
17 10 0.26
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTTTTAAAAAATATTC
Found at i:64291302 original size:39 final size:39
Alignment explanation
Indices: 64291243--64291320 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
64291233 ACGTATGTCT
* *
64291243 TGATTTTTTGTCAAAAATATATTTGAACACTGAAACAAA
1 TGATCTTTTGTCAAAAATATATATGAACACTGAAACAAA
* *
64291282 TGATCTTTTGTCAAAAATATATATGTACATTGAAACAAA
1 TGATCTTTTGTCAAAAATATATATGAACACTGAAACAAA
64291321 ATTATAGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (39 bp):
TGATCTTTTGTCAAAAATATATATGAACACTGAAACAAA
Found at i:64293481 original size:3 final size:3
Alignment explanation
Indices: 64293473--64293529 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
64293463 TTAAAACAAC
64293473 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
64293521 TAA TAA TAA
1 TAA TAA TAA
64293530 AAGACGAAGA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:64306486 original size:30 final size:32
Alignment explanation
Indices: 64306450--64306511 Score: 92
Period size: 30 Copynumber: 2.0 Consensus size: 32
64306440 TATAAAAAAA
**
64306450 ATTTATTTTAGCT-TTTCATTTA-ATTTTTTT
1 ATTTATTTTAGCTCTTAAATTTATATTTTTTT
64306480 ATTTATTTTAGCTCTTAAATTTATATTTTTTT
1 ATTTATTTTAGCTCTTAAATTTATATTTTTTT
64306512 TGTCAAATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 13 0.46
31 7 0.25
32 8 0.29
ACGTcount: A:0.23, C:0.06, G:0.03, T:0.68
Consensus pattern (32 bp):
ATTTATTTTAGCTCTTAAATTTATATTTTTTT
Done.