Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 20 of 210
Found at i:6853189 original size:2 final size:2
Alignment explanation
Indices: 6853182--6853206 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6853172 TTTATTGGAA
6853182 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
6853207 AAAGTTAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6853208 original size:90 final size:90
Alignment explanation
Indices: 6853055--6853225 Score: 324
Period size: 90 Copynumber: 1.9 Consensus size: 90
6853045 ACAATCATCA
6853055 CAAATATGAGTACATAAACCCTAAAATTTTATTGGAAATATATATATATATATATATATATAAAA
1 CAAATATGAGTACATAAACCCTAAAATTTTATTGGAAATATATATATATATATATATATATAAAA
6853120 ATTAGAGATAAATCACATATTACTG
66 ATTAGAGATAAATCACATATTACTG
6853145 CAAATATGAGTACATAAACCCTAAAATTTTATTGGAAATATATATATATATATATATATATAAAA
1 CAAATATGAGTACATAAACCCTAAAATTTTATTGGAAATATATATATATATATATATATATAAAA
* *
6853210 GTTAGAGTTAAATCAC
66 ATTAGAGATAAATCAC
6853226 CTAATTCCGT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.49, C:0.09, G:0.08, T:0.35
Consensus pattern (90 bp):
CAAATATGAGTACATAAACCCTAAAATTTTATTGGAAATATATATATATATATATATATATAAAA
ATTAGAGATAAATCACATATTACTG
Found at i:6859508 original size:6 final size:6
Alignment explanation
Indices: 6859499--6859528 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
6859489 TTCTTCAAGC
*
6859499 CACCCT CACCCT CACCCT CACCCT CTCCCT
1 CACCCT CACCCT CACCCT CACCCT CACCCT
6859529 TCCTTCCCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.13, C:0.67, G:0.00, T:0.20
Consensus pattern (6 bp):
CACCCT
Found at i:6861179 original size:16 final size:16
Alignment explanation
Indices: 6861154--6861186 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6861144 ATATATATTT
6861154 AAAAAGTAATTTTTTA
1 AAAAAGTAATTTTTTA
*
6861170 AAAAATTAATTTTTTA
1 AAAAAGTAATTTTTTA
6861186 A
1 A
6861187 TCTCACTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
AAAAAGTAATTTTTTA
Found at i:6863970 original size:14 final size:15
Alignment explanation
Indices: 6863953--6863981 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
6863943 TAAAAGAACT
6863953 ATATAAAAA-TAATA
1 ATATAAAAAGTAATA
6863967 ATATAAAAAGTAATA
1 ATATAAAAAGTAATA
6863982 TGGGTCGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
ATATAAAAAGTAATA
Found at i:6864646 original size:28 final size:27
Alignment explanation
Indices: 6864596--6864648 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
6864586 GTACTTCATG
**
6864596 CTATTTTTTAAATTTTATTTTATTTTT
1 CTATTTTTTAAATTTTAAATTATTTTT
*
6864623 CTATTTTTATAATTTTTAAATTATTT
1 CTATTTTT-TAAATTTTAAATTATTT
6864649 GTTGGCATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (27 bp):
CTATTTTTTAAATTTTAAATTATTTTT
Found at i:6867414 original size:16 final size:16
Alignment explanation
Indices: 6867365--6867421 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
6867355 TTTTTAAATT
6867365 ATAAATTAATTTAATA
1 ATAAATTAATTTAATA
* * *
6867381 A-CAA-TAA--CAATT
1 ATAAATTAATTTAATA
6867393 ATAAATTAATTTAATA
1 ATAAATTAATTTAATA
6867409 ATAAATTATATTT
1 ATAAATTA-ATTT
6867422 TACCTCTCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 9
0.67 0.13 0.20
Matches are distributed among these distances:
12 4 0.13
13 2 0.07
14 6 0.20
15 2 0.07
16 12 0.40
17 4 0.13
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAAATTAATTTAATA
Found at i:6867921 original size:63 final size:63
Alignment explanation
Indices: 6867822--6867948 Score: 211
Period size: 63 Copynumber: 2.0 Consensus size: 63
6867812 ATGGAGGTCT
* *
6867822 ACCTAGAACGTCACATGCAAGAACTATATTATATAAATAGCAAAATTAACCTCCTTGAAGAGG
1 ACCTAAAACGTCACATGCAAGAACTACATTATATAAATAGCAAAATTAACCTCCTTGAAGAGG
*
6867885 ACCTAAAACGTCACATGCAAGAA-TCACATTATATAAATAGCGAAATTAACCTCCTTGAAGAGG
1 ACCTAAAACGTCACATGCAAGAACT-ACATTATATAAATAGCAAAATTAACCTCCTTGAAGAGG
6867948 A
1 A
6867949 GACACACAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 1 0.02
63 59 0.98
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (63 bp):
ACCTAAAACGTCACATGCAAGAACTACATTATATAAATAGCAAAATTAACCTCCTTGAAGAGG
Found at i:6869375 original size:22 final size:22
Alignment explanation
Indices: 6869349--6869399 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
6869339 TATAGTTCAT
6869349 CCAACTATGTTTTTTTT-GTCAC
1 CCAACTAT-TTTTTTTTGGTCAC
*
6869371 CCAACAAATTTTTTTTTGGTCAC
1 CCAAC-TATTTTTTTTTGGTCAC
6869394 CCAACT
1 CCAACT
6869400 TTGAAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.24, C:0.25, G:0.08, T:0.43
Consensus pattern (22 bp):
CCAACTATTTTTTTTTGGTCAC
Found at i:6873444 original size:16 final size:18
Alignment explanation
Indices: 6873405--6873446 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
6873395 TAAGTTTATA
6873405 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
6873422 ATTTTTATATATTATG-T
1 ATATTTATATATTATGTT
6873439 A-ATTTATA
1 ATATTTATA
6873447 ACACATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:6874422 original size:14 final size:14
Alignment explanation
Indices: 6874403--6874432 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6874393 CTTTTATTAC
*
6874403 ATAAAAATATAAAA
1 ATAAAAATAAAAAA
6874417 ATAAAAATAAAAAA
1 ATAAAAATAAAAAA
6874431 AT
1 AT
6874433 TTCATANNNN
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
ATAAAAATAAAAAA
Found at i:6875776 original size:13 final size:14
Alignment explanation
Indices: 6875741--6875778 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
6875731 TGCAAAATTA
6875741 TTAATTTTATAATAT
1 TTAATTTT-TAATAT
6875756 TT-ATTTTTAA-AT
1 TTAATTTTTAATAT
6875768 TTAATTTTTAA
1 TTAATTTTTAA
6875779 CATATGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.18
13 11 0.50
14 5 0.23
15 2 0.09
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTAATTTTTAATAT
Found at i:6877907 original size:20 final size:18
Alignment explanation
Indices: 6877859--6877907 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
6877849 TAATTTTTTT
6877859 AAAAT-TTTAAAAAATAA
1 AAAATATTTAAAAAATAA
*
6877876 ATAATATATTAAAAATATAA
1 AAAATAT-TTAAAAA-ATAA
6877896 AAAATGATTTAA
1 AAAAT-ATTTAA
6877908 TCGGCTCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 4 0.15
18 1 0.04
19 7 0.27
20 12 0.46
21 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
AAAATATTTAAAAAATAA
Found at i:6878090 original size:3 final size:3
Alignment explanation
Indices: 6878082--6878117 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
6878072 ACAAAAACAA
6878082 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6878118 TACGAGCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:6879049 original size:8 final size:8
Alignment explanation
Indices: 6879036--6879068 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
6879026 GTATGTTGTT
6879036 TTATTATA
1 TTATTATA
6879044 TTATTATA
1 TTATTATA
*
6879052 ATATTATA
1 TTATTATA
6879060 TTATTATA
1 TTATTATA
6879068 T
1 T
6879069 ATATAAAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTATTATA
Found at i:6879058 original size:16 final size:17
Alignment explanation
Indices: 6879037--6879072 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
6879027 TATGTTGTTT
6879037 TATTATATTATTATA-A
1 TATTATATTATTATATA
6879053 TATTATATTATTATATA
1 TATTATATTATTATATA
6879070 TAT
1 TAT
6879073 AAAGCAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTATATTATTATATA
Found at i:6884466 original size:3 final size:3
Alignment explanation
Indices: 6884460--6884527 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
6884450 CCTCCTCCTC
6884460 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6884508 ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
6884528 GTACGAGCAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:6885460 original size:8 final size:8
Alignment explanation
Indices: 6885447--6885479 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
6885437 GTATGTTGTT
6885447 TTATTATA
1 TTATTATA
6885455 TTATTATA
1 TTATTATA
*
6885463 ATATTATA
1 TTATTATA
6885471 TTATTATA
1 TTATTATA
6885479 T
1 T
6885480 ATATAAAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTATTATA
Found at i:6885469 original size:16 final size:17
Alignment explanation
Indices: 6885448--6885483 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
6885438 TATGTTGTTT
6885448 TATTATATTATTATA-A
1 TATTATATTATTATATA
6885464 TATTATATTATTATATA
1 TATTATATTATTATATA
6885481 TAT
1 TAT
6885484 AAAGCAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTATATTATTATATA
Found at i:6886858 original size:6 final size:6
Alignment explanation
Indices: 6886847--6886900 Score: 72
Period size: 6 Copynumber: 8.8 Consensus size: 6
6886837 AATACTATTT
* * *
6886847 CTGTTA CTGTTA CTGTTA CTATTA CTGTTA CTGCTA CAGTTA CTGATTA
1 CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA CTG-TTA
6886896 CTGTT
1 CTGTT
6886901 TAGGTGTTGT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
6 35 0.85
7 6 0.15
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
CTGTTA
Found at i:6888848 original size:30 final size:30
Alignment explanation
Indices: 6888822--6888880 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
6888812 AATTGGTATT
6888822 TGAACTTGATAATTTTTCTAATTTGGTACC
1 TGAACTTGATAATTTTTCTAATTTGGTACC
* **
6888852 TGAATTTGATTTTTTTTCTAATTTGGTAC
1 TGAACTTGATAATTTTTCTAATTTGGTAC
6888881 TTAAGCTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.53
Consensus pattern (30 bp):
TGAACTTGATAATTTTTCTAATTTGGTACC
Found at i:6889758 original size:23 final size:23
Alignment explanation
Indices: 6889732--6889783 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
6889722 TAGTCTATAT
* *
6889732 CTGTAATATCTCGAAAATTACTA
1 CTGTAATACCACGAAAATTACTA
*
6889755 CTGTAATACCACGAAAATTATTA
1 CTGTAATACCACGAAAATTACTA
*
6889778 CAGTAA
1 CTGTAA
6889784 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (23 bp):
CTGTAATACCACGAAAATTACTA
Found at i:6890625 original size:48 final size:47
Alignment explanation
Indices: 6890550--6890646 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 47
6890540 AAGTTAAAGA
6890550 TTGAAATCAATAGCACAAGGTAAGAACATCAAGATTTCAATATATTT
1 TTGAAATCAATAGCACAAGGTAAGAACATCAAGATTTCAATATATTT
* **
6890597 TTGAGAATCAATAGGACAAGGTAAGAACATTGAGATTTCAATATATTT
1 TTGA-AATCAATAGCACAAGGTAAGAACATCAAGATTTCAATATATTT
6890645 TT
1 TT
6890647 AAGTTTGATA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
47 4 0.09
48 42 0.91
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.32
Consensus pattern (47 bp):
TTGAAATCAATAGCACAAGGTAAGAACATCAAGATTTCAATATATTT
Found at i:6891580 original size:11 final size:11
Alignment explanation
Indices: 6891566--6891592 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
6891556 TATTTTTTAA
6891566 TTTTAAAATAC
1 TTTTAAAATAC
6891577 TTTTAAAATAC
1 TTTTAAAATAC
6891588 TTTTA
1 TTTTA
6891593 TTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:6892591 original size:8 final size:8
Alignment explanation
Indices: 6892580--6892606 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
6892570 CCTTTACCAA
6892580 TTTAAAAT
1 TTTAAAAT
6892588 TTTAAAAT
1 TTTAAAAT
6892596 TTTAAAAT
1 TTTAAAAT
6892604 TTT
1 TTT
6892607 CTAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTAAAAT
Found at i:6894951 original size:2 final size:2
Alignment explanation
Indices: 6894944--6894983 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
6894934 CATTTGGGGA
6894944 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
6894984 ATATATATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:6895150 original size:6 final size:6
Alignment explanation
Indices: 6895139--6895177 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
6895129 GGTGAGCATT
*
6895139 TACATA TACATA TACATA CACATA TAACATA TACATA TA
1 TACATA TACATA TACATA TACATA T-ACATA TACATA TA
6895178 TGTATATGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (6 bp):
TACATA
Found at i:6895183 original size:19 final size:19
Alignment explanation
Indices: 6895140--6895175 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
6895130 GTGAGCATTT
6895140 ACATAT-ACATATACATAC
1 ACATATAACATATACATAC
6895158 ACATATAACATATACATA
1 ACATATAACATATACATA
6895176 TATGTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (19 bp):
ACATATAACATATACATAC
Found at i:6900485 original size:16 final size:16
Alignment explanation
Indices: 6900464--6900499 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
6900454 TTGACCCACT
6900464 TCAGTCCCCAATATTA
1 TCAGTCCCCAATATTA
* *
6900480 TCAGTCCCTAATGTTA
1 TCAGTCCCCAATATTA
6900496 TCAG
1 TCAG
6900500 ATGTTCTCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (16 bp):
TCAGTCCCCAATATTA
Found at i:6909749 original size:87 final size:89
Alignment explanation
Indices: 6909638--6909816 Score: 335
Period size: 87 Copynumber: 2.0 Consensus size: 89
6909628 GGGGCAAAGG
*
6909638 TAAATTTATATTATGCCTTATGTTTTTAAGATATTTATTAATGGTTATGAAGGTTAGGGATTATT
1 TAAATTTATATTATGCCTTATGTTTTTAAGATATTTATTAATGATTATGAAGGTTAGGGATTATT
6909703 GCTTGCTTACTCCATGTAGATAAT
66 GCTTGCTTACTCCATGTAGATAAT
6909727 TAAATTTATA-T-TGCCTTATGTTTTTAAGATATTTATTAATGATTATGAAGGTTAGGGATTATT
1 TAAATTTATATTATGCCTTATGTTTTTAAGATATTTATTAATGATTATGAAGGTTAGGGATTATT
6909790 GCTTGCTTACTCCATGTAGATAAT
66 GCTTGCTTACTCCATGTAGATAAT
6909814 TAA
1 TAA
6909817 TCTTTTAATT
Statistics
Matches: 89, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
87 78 0.88
88 1 0.01
89 10 0.11
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (89 bp):
TAAATTTATATTATGCCTTATGTTTTTAAGATATTTATTAATGATTATGAAGGTTAGGGATTATT
GCTTGCTTACTCCATGTAGATAAT
Found at i:6909852 original size:87 final size:87
Alignment explanation
Indices: 6909655--6909858 Score: 252
Period size: 87 Copynumber: 2.3 Consensus size: 87
6909645 ATATTATGCC
* * *
6909655 TTATGTTTTTAAGATATTTATTAATGGTTATGAAGGTTAGGGATTATTGCTTGCTTACTCCATGT
1 TTATGTTTTTAAGACATTAATTAATGATTATGAAGGTTAGGGATTATTGCTTGCTTACTCCATGT
***
6909720 AGATAATTAAATTTATATTGCC
66 AGATAATTAAATTTATATTAAA
* *
6909742 TTATGTTTTTAAGATATTTATTAATGATTATGAAGGTTAGGGATTATTGCTTGCTTACTCCATGT
1 TTATGTTTTTAAGACATTAATTAATGATTATGAAGGTTAGGGATTATTGCTTGCTTACTCCATGT
*
6909807 AGATAATT-AATCTTTTAATTAAAA
66 AGATAATTAAAT-TTAT-ATT-AAA
** *
6909831 TT-TGTTTTTATTACA-TAATTAATAATTA
1 TTATGTTTTTAAGACATTAATTAATGATTA
6909859 ATAATTTATA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
86 3 0.03
87 86 0.83
88 13 0.12
89 2 0.02
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (87 bp):
TTATGTTTTTAAGACATTAATTAATGATTATGAAGGTTAGGGATTATTGCTTGCTTACTCCATGT
AGATAATTAAATTTATATTAAA
Found at i:6913736 original size:949 final size:948
Alignment explanation
Indices: 6911840--6913739 Score: 3370
Period size: 949 Copynumber: 2.0 Consensus size: 948
6911830 CCCCAGGTGA
*
6911840 TAAATAGCGCACACTCCAGTTATTCATCAACTTAACAAAGAGTTCTTTAATTCCAACAAAAGCAT
1 TAAATAGCGCACACTCCAGTTATTCATCAACTTAACAAAGAGTTCTTTAAATCCAACAAAAGCAT
* *
6911905 GTTTTTTCCTACATCCAACCATAGTTGGCAATCCCAAATACCTCTCTTGATTATTAGAAATCTGC
66 GTTTTTTCCTACATCCAACCATAGTTGGCAATCCCAAATACCTCTCTAGATTATTAGAAATCTAC
6911970 ACTCACAATATTCTCCCCACATGTTCCTGTATTTCTTATTCAACATTACAACTGAAATAGATTAG
131 ACTCACAATATTCTCCCCACATGTTCCTGTATTTCTTATTCAACATTACAACTGAAATAGATTAG
*
6912035 GGACTTGTCGAAGTTGACCAATTGTCCCGAAACTGCCTTCATACTCATTGATCATCATTTTCATA
196 GGACTTGTCGAAGTTGACCAATTGTCCCGAAACCGCCTTCATACTCATTGATCATCATTTTCATA
* *
6912100 ATATTTGCACCGTCAGTTGATACCTCTCCAAGCAACACACTATCATCAGCAAAAAACAAATGTGT
261 ATATTTACACCGTCAGTAGATACCTCTCCAAGCAACACACTATCATCAGCAAAAAACAAATGTGT
6912165 CACCAAAATACCACTTCTTCCCACCCTTGCCCCAAAGAGCCTCCCCTCCTTCCTAGCCATGTTAA
326 CACCAAAATACCACTTCTTCCCACCCTTGCCCCAAAGAGCCTCCCCTCCTTCCTAGCCATGTTAA
* * * *
6912230 GTAATTGTGAGAATCCTTGGCAGAAATTAGGAACAAATACGGGCCTAGGGGATCTCCTTGCCTCA
391 GTAATCGTAAGAATCCTTAGCAGAAATTAAGAACAAATACGGGCCTAGGGGATCTCCTTGCCTCA
*
6912295 AACCTCTTGTAGGCCGAAACTCTTCCCCATGTGTTCCATTAATCACTACTGTATACAATACACTA
456 AACCTCTTGTAGGCCGAAACTCTTCCCCATGTGTTCCATTAATCACTACTGTATACAATACAATA
* *
6912360 GCTATACACCTCATTATAAGTGAAATCCACTCCTCACAAAAACCCATTTTTGCATCATTTTCTCC
521 GCTATACACCTCATTATAAGTGAAATCCACTCCTCAAAAAAACCCATTTTTGCATCATTTTCTCA
6912425 AAAAAAACCACTCGACCCTGTCATACGCTTTGCTCATATCGAGTTTTAAAGCAAAGCCTCTATTT
586 AAAAAAACCACTCGACCCTGTCATACGCTTTGCTCATATCGAGTTTTAAAGCAAAGCCTCTATTT
*
6912490 GAAGTCCCTCTTCTTCTCTTGAACGAGTGCGAGATTTCATATACCACAAAAATATTGTCTGTGAT
651 GAAGTCCCTCTTCTTCTCTTGAACGAGTGCGAAATTTCATATACCACAAAAATATTGTCTGTGAT
* * *
6912555 TTACCTTCCTTGTACGGACGCCCCTTGGGTATCATCTATACAATAGTTAAGCACTTGGCGAAATC
716 TTACCTTCCTGGTACGAACGCCCCTTGGGTATCATCTATACAATAGTTAAGCACTTGGCAAAATC
* *
6912620 AGTTGACTAACACTTTCGAGATAATTTTATAAATCTTATTACAAAGACTAATAGGTCGAAACTGA
781 AGTTGACTAACACTTTCGAGATAATTTTATAAATCATATTACAAAGACTAATAGGTCAAAACTGA
6912685 CTCATAGACTTCAGCAAATTCACCTTAGGGATAAGAACAATATTTGTATGGTTCACCTCCTCTAT
846 CTCATAGACTTCAGCAAATTCACCTTAGGGATAAGAACAATATTTGTATGGTTCACCTCCTCTAT
*
6912750 GTTCCTTCGACCATTTAGCGCATCCTAACAATACCTAG
911 GTTCCTTCGACCATTTAGCGCATCCAAACAATACCTAG
**
6912788 TAAATAGCGCACACTCCAGTTATTCATCAACTTAACAAATCGTTCTTTAAATCCAACAAAAGCAT
1 TAAATAGCGCACACTCCAGTTATTCATCAACTTAACAAAGAGTTCTTTAAATCCAACAAAAGCAT
*
6912853 GTTTTTTCCTACGTCCAACCATAGTTGGCAATCCCAAATACCTCTCTAGATTATTAGAAATCTAC
66 GTTTTTTCCTACATCCAACCATAGTTGGCAATCCCAAATACCTCTCTAGATTATTAGAAATCTAC
* * *
6912918 ACTCACAATATTCTCCCCACTTGTTCCTGTATTTCTTGTTCAACATTACAACTGAACTAGATTAG
131 ACTCACAATATTCTCCCCACATGTTCCTGTATTTCTTATTCAACATTACAACTGAAATAGATTAG
* * *
6912983 GGACTTGTCGAAGTTGACCAATTGTCCCGACACCG-CTTCATATTCATTGATCATCCTTTTCATA
196 GGACTTGTCGAAGTTGACCAATTGTCCCGAAACCGCCTTCATACTCATTGATCATCATTTTCATA
* * *
6913047 ATATTTACACCGTCAGTAGATGCCTCTCCAAGCAACACATTATCATCAGCAAAAAATAAATGTGT
261 ATATTTACACCGTCAGTAGATACCTCTCCAAGCAACACACTATCATCAGCAAAAAACAAATGTGT
6913112 CACCAAAATACCACTTCTTCCCACCCTTGCCCCAAAGAGCCTCCCCTCCTTCCTAGCCATGTTAA
326 CACCAAAATACCACTTCTTCCCACCCTTGCCCCAAAGAGCCTCCCCTCCTTCCTAGCCATGTTAA
*
6913177 GTAATCGTAAGAATCCTTAGCAGAAATTAAGAACAAATATGGGCCTAGGGGATCTCCTTGCCTCA
391 GTAATCGTAAGAATCCTTAGCAGAAATTAAGAACAAATACGGGCCTAGGGGATCTCCTTGCCTCA
*
6913242 AACCTCTTGTAGGCCGAAACTCTTCCCCATGTGTTCTATTAATCACTACTGTATACAATACAATA
456 AACCTCTTGTAGGCCGAAACTCTTCCCCATGTGTTCCATTAATCACTACTGTATACAATACAATA
* *
6913307 GCTCTACACCTTATTATAAGTGAAATCCACTCCTCAAAAAAACCCATTCTTTGCATCATTTTCTC
521 GCTATACACCTCATTATAAGTGAAATCCACTCCTCAAAAAAACCCATT-TTTGCATCATTTTCTC
* *
6913372 AAAAAAACACCACTCGACCCTGTCATACGCTTTGCTCATTTTGAGTTTTAAAGCAAAGCCTCTAT
585 AAAAAAA-ACCACTCGACCCTGTCATACGCTTTGCTCATATCGAGTTTTAAAGCAAAGCCTCTAT
*
6913437 TTGAAGTCCCTCTTCTTCTCTTGAACGAGTGCGAAATTTCATATACCATAAAAATATTGTCTGTG
649 TTGAAGTCCCTCTTCTTCTCTTGAACGAGTGCGAAATTTCATATACCACAAAAATATTGTCTGTG
*
6913502 ATTTGCCTTCCTGGTACGAACGCCCCTTGGGTATCATCTATACAATAGTTAAGCACTTGGCAAAA
714 ATTTACCTTCCTGGTACGAACGCCCCTTGGGTATCATCTATACAATAGTTAAGCACTTGGCAAAA
* * *
6913567 TCAGTTGACTAACACTTTCGAGATAATTTTTTAAATCATATTATAAAGACTAATAGGTCAAAATT
779 TCAGTTGACTAACACTTTCGAGATAATTTTATAAATCATATTACAAAGACTAATAGGTCAAAACT
* *
6913632 GACTCATAGACTTCAGCAAATTCACCTTAGGGATAAGAACAATATTTGTATGGTTCACTTCTTCT
844 GACTCATAGACTTCAGCAAATTCACCTTAGGGATAAGAACAATATTTGTATGGTTCACCTCCTCT
6913697 ATGTTCCTTCGACCATTTAGCGCATCCAAACAATACCTAG
909 ATGTTCCTTCGACCATTTAGCGCATCCAAACAATACCTAG
6913737 TAA
1 TAA
6913740 CTTCATCCCC
Statistics
Matches: 905, Mismatches: 45, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
947 320 0.35
948 241 0.27
949 344 0.38
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (948 bp):
TAAATAGCGCACACTCCAGTTATTCATCAACTTAACAAAGAGTTCTTTAAATCCAACAAAAGCAT
GTTTTTTCCTACATCCAACCATAGTTGGCAATCCCAAATACCTCTCTAGATTATTAGAAATCTAC
ACTCACAATATTCTCCCCACATGTTCCTGTATTTCTTATTCAACATTACAACTGAAATAGATTAG
GGACTTGTCGAAGTTGACCAATTGTCCCGAAACCGCCTTCATACTCATTGATCATCATTTTCATA
ATATTTACACCGTCAGTAGATACCTCTCCAAGCAACACACTATCATCAGCAAAAAACAAATGTGT
CACCAAAATACCACTTCTTCCCACCCTTGCCCCAAAGAGCCTCCCCTCCTTCCTAGCCATGTTAA
GTAATCGTAAGAATCCTTAGCAGAAATTAAGAACAAATACGGGCCTAGGGGATCTCCTTGCCTCA
AACCTCTTGTAGGCCGAAACTCTTCCCCATGTGTTCCATTAATCACTACTGTATACAATACAATA
GCTATACACCTCATTATAAGTGAAATCCACTCCTCAAAAAAACCCATTTTTGCATCATTTTCTCA
AAAAAAACCACTCGACCCTGTCATACGCTTTGCTCATATCGAGTTTTAAAGCAAAGCCTCTATTT
GAAGTCCCTCTTCTTCTCTTGAACGAGTGCGAAATTTCATATACCACAAAAATATTGTCTGTGAT
TTACCTTCCTGGTACGAACGCCCCTTGGGTATCATCTATACAATAGTTAAGCACTTGGCAAAATC
AGTTGACTAACACTTTCGAGATAATTTTATAAATCATATTACAAAGACTAATAGGTCAAAACTGA
CTCATAGACTTCAGCAAATTCACCTTAGGGATAAGAACAATATTTGTATGGTTCACCTCCTCTAT
GTTCCTTCGACCATTTAGCGCATCCAAACAATACCTAG
Found at i:6916693 original size:16 final size:18
Alignment explanation
Indices: 6916672--6916707 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6916662 AAGTTCAATG
6916672 ATTAAA-AG-AGGCTAAA
1 ATTAAATAGAAGGCTAAA
6916688 ATTAAATAGAAGGCTAAA
1 ATTAAATAGAAGGCTAAA
6916706 AT
1 AT
6916708 GACTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 2 0.11
18 10 0.56
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (18 bp):
ATTAAATAGAAGGCTAAA
Found at i:6917219 original size:22 final size:21
Alignment explanation
Indices: 6917196--6917237 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6917186 TTATGCCCAT
6917196 ATAT-TTTATGATTAAATTTA
1 ATATGTTTATGATTAAATTTA
* *
6917216 ATATGTTTATTATTTAATTTA
1 ATATGTTTATGATTAAATTTA
6917237 A
1 A
6917238 ACTTGAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATATGTTTATGATTAAATTTA
Found at i:6921462 original size:173 final size:173
Alignment explanation
Indices: 6921173--6921519 Score: 694
Period size: 173 Copynumber: 2.0 Consensus size: 173
6921163 AAGGATTGAA
6921173 TTGAATTTTTATAATTTTTGGGGGGCAGAAGTATAATTTTACATTTACTAATTTAAAATTTTTTT
1 TTGAATTTTTATAATTTTTGGGGGGCAGAAGTATAATTTTACATTTACTAATTTAAAATTTTTTT
6921238 AAAAAAATTTGAGGGCCTAAATAGTAATTTTACATTTTAAGGGGGCCGGGACCCCTGACAGCCCC
66 AAAAAAATTTGAGGGCCTAAATAGTAATTTTACATTTTAAGGGGGCCGGGACCCCTGACAGCCCC
6921303 CCCTAAATTCGCCTCTGCGCAAAGGCTCTGGCCCTAGACTTGT
131 CCCTAAATTCGCCTCTGCGCAAAGGCTCTGGCCCTAGACTTGT
6921346 TTGAATTTTTATAATTTTTGGGGGGCAGAAGTATAATTTTACATTTACTAATTTAAAATTTTTTT
1 TTGAATTTTTATAATTTTTGGGGGGCAGAAGTATAATTTTACATTTACTAATTTAAAATTTTTTT
6921411 AAAAAAATTTGAGGGCCTAAATAGTAATTTTACATTTTAAGGGGGCCGGGACCCCTGACAGCCCC
66 AAAAAAATTTGAGGGCCTAAATAGTAATTTTACATTTTAAGGGGGCCGGGACCCCTGACAGCCCC
6921476 CCCTAAATTCGCCTCTGCGCAAAGGCTCTGGCCCTAGACTTGT
131 CCCTAAATTCGCCTCTGCGCAAAGGCTCTGGCCCTAGACTTGT
6921519 T
1 T
6921520 CATGTGTTGG
Statistics
Matches: 174, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
173 174 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34
Consensus pattern (173 bp):
TTGAATTTTTATAATTTTTGGGGGGCAGAAGTATAATTTTACATTTACTAATTTAAAATTTTTTT
AAAAAAATTTGAGGGCCTAAATAGTAATTTTACATTTTAAGGGGGCCGGGACCCCTGACAGCCCC
CCCTAAATTCGCCTCTGCGCAAAGGCTCTGGCCCTAGACTTGT
Found at i:6924257 original size:24 final size:24
Alignment explanation
Indices: 6924225--6924275 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
6924215 TACTTGGGTA
6924225 ATTTGCCGTCAATTCATCCTTTAC
1 ATTTGCCGTCAATTCATCCTTTAC
*
6924249 ATTTTCCGTCAATTCATCCTTTAC
1 ATTTGCCGTCAATTCATCCTTTAC
6924273 ATT
1 ATT
6924276 CGTAGTGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.27, G:0.06, T:0.45
Consensus pattern (24 bp):
ATTTGCCGTCAATTCATCCTTTAC
Found at i:6924454 original size:101 final size:101
Alignment explanation
Indices: 6924278--6924508 Score: 345
Period size: 101 Copynumber: 2.3 Consensus size: 101
6924268 TTTACATTCG
* * * * * *
6924278 TAGTGTCATAACCCAGTTATGGTCTTTTCATCAAAATTCTATATCCCAGCTATGGTCTTACATAT
1 TAGTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGGTCTTACATAT
* * *
6924343 AAACATTGCCATGGTCCAACCATGGTCTTACGTTTA
66 AAACACTGCCATGGTCCAACCATGGTCTTAAGTTCA
* *
6924379 TAGTGCCATAACCTAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGGTCTTACATAT
1 TAGTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGGTCTTACATAT
6924444 AAACACTGCCATGGTCCAACCATGGTCTTAAGTTCA
66 AAACACTGCCATGGTCCAACCATGGTCTTAAGTTCA
* *
6924480 TAGTGCCATAACCCAGTTATTGTATTATC
1 TAGTGCCATAACCCAGTTATGGTCTTATC
6924509 CGTGAATTCA
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 116 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (101 bp):
TAGTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGGTCTTACATAT
AAACACTGCCATGGTCCAACCATGGTCTTAAGTTCA
Found at i:6924463 original size:35 final size:33
Alignment explanation
Indices: 6924327--6924473 Score: 93
Period size: 33 Copynumber: 4.3 Consensus size: 33
6924317 TATATCCCAG
6924327 CTATGGTCTTACATATAAACATTGCCATGGTCCAA
1 CTATGGTCTTACAT-TAAACA-TGCCATGGTCCAA
* * * * ** *
6924362 CCATGGTCTTACGTTTATA-GTGCCAT-AACCTAG
1 CTATGGTCTTAC-ATTAAACATGCCATGGTCC-AA
* * * * *
6924395 TTATGGTCTTATCATCAGA-ATGCCATAGCCCAA
1 CTATGGTCTTA-CATTAAACATGCCATGGTCCAA
6924428 CTATGGTCTTACATATAAACACTGCCATGGTCCAA
1 CTATGGTCTTACAT-TAAACA-TGCCATGGTCCAA
*
6924463 CCATGGTCTTA
1 CTATGGTCTTA
6924474 AGTTCATAGT
Statistics
Matches: 83, Mismatches: 22, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
32 5 0.06
33 38 0.46
34 4 0.05
35 35 0.42
36 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (33 bp):
CTATGGTCTTACATTAAACATGCCATGGTCCAA
Found at i:6925391 original size:11 final size:11
Alignment explanation
Indices: 6925377--6925401 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6925367 TTTATTTTAT
6925377 TTTAATTACAA
1 TTTAATTACAA
6925388 TTTAATTACAA
1 TTTAATTACAA
6925399 TTT
1 TTT
6925402 TGCCATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTAATTACAA
Found at i:6926505 original size:16 final size:17
Alignment explanation
Indices: 6926476--6926508 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
6926466 ATTAAATTTT
*
6926476 TATATATATTTAAAAAA
1 TATATATATATAAAAAA
6926493 TATA-ATATATAAAAAA
1 TATATATATATAAAAAA
6926509 ACACTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TATATATATATAAAAAA
Found at i:6928010 original size:3 final size:3
Alignment explanation
Indices: 6928002--6928050 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
6927992 CAAAAACAGT
6928002 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6928050 T
1 T
6928051 TTTAGAGTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:6928117 original size:9 final size:9
Alignment explanation
Indices: 6928002--6928117 Score: 60
Period size: 9 Copynumber: 12.7 Consensus size: 9
6927992 CAAAAACAGT
*
6928002 TAATAATAA
1 TAATTATAA
*
6928011 TAATAATAA
1 TAATTATAA
*
6928020 TAATAATAA
1 TAATTATAA
*
6928029 TAATAATAA
1 TAATTATAA
*
6928038 TAATAATAA
1 TAATTATAA
*
6928047 TAATTTTAGA
1 TAATTATA-A
6928057 GTAATTAATAA
1 -TAATT-ATAA
* *
6928068 GAATTA-ATT
1 TAATTATA-A
6928077 TAATT-TACA
1 TAATTATA-A
*
6928086 TAAATTAT-T
1 T-AATTATAA
6928095 TAATT-TAA
1 TAATTATAA
6928103 TAATTATAA
1 TAATTATAA
*
6928112 TGATTA
1 TAATTA
6928118 ATTTAATAGA
Statistics
Matches: 87, Mismatches: 11, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
7 1 0.01
8 10 0.11
9 58 0.67
10 9 0.10
11 7 0.08
12 2 0.02
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (9 bp):
TAATTATAA
Found at i:6929583 original size:13 final size:13
Alignment explanation
Indices: 6929567--6929619 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
6929557 TTTAAACCAA
6929567 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
6929580 ACTTCTT-AAAAGC
1 ACTT-TTCAAAAGC
* *
6929593 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
6929606 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
6929619 A
1 A
6929620 ATGAAGAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 2 0.06
13 30 0.88
14 2 0.06
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:6936966 original size:9 final size:9
Alignment explanation
Indices: 6936952--6936988 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
6936942 TATATTTTGA
6936952 TATTCGAAT
1 TATTCGAAT
6936961 TATTCGAAT
1 TATTCGAAT
*
6936970 TATTCGAGT
1 TATTCGAAT
*
6936979 TCTTCGAAT
1 TATTCGAAT
6936988 T
1 T
6936989 TGAAACCTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:6943331 original size:21 final size:21
Alignment explanation
Indices: 6943286--6943332 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
6943276 TAAAAATTTC
* *
6943286 AAAAATAAAATTTAACTTTAA
1 AAAAATAAAATCTAACATTAA
6943307 AAAAATAAAATCTAA-ATTAA
1 AAAAATAAAATCTAACATTAA
*
6943327 TAAAAT
1 AAAAAT
6943333 GTTTATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAAATAAAATCTAACATTAA
Found at i:6945182 original size:13 final size:13
Alignment explanation
Indices: 6945166--6945192 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6945156 TTCATTTCAA
6945166 TGATATATCAAAT
1 TGATATATCAAAT
6945179 TGATATATCAAAT
1 TGATATATCAAAT
6945192 T
1 T
6945193 CACTCCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (13 bp):
TGATATATCAAAT
Found at i:6969879 original size:25 final size:24
Alignment explanation
Indices: 6969850--6969910 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 24
6969840 ATATTCTAAA
*
6969850 TAAAATATAAAAATT-ATAATTTTT
1 TAAAATATAAAAATTCAT-ACTTTT
6969874 TAAAA-ATAAATAAATTCATACTTTT
1 TAAAATAT-AA-AAATTCATACTTTT
6969899 TAAAAT-TAAAAA
1 TAAAATATAAAAA
6969911 CTATTAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
23 5 0.16
24 9 0.28
25 16 0.50
26 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (24 bp):
TAAAATATAAAAATTCATACTTTT
Found at i:6969937 original size:17 final size:17
Alignment explanation
Indices: 6969897--6969937 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
6969887 ATTCATACTT
*
6969897 TTTAAAATTAAAAACTA
1 TTTAAAAATAAAAACTA
* *
6969914 TTAAAAAATAAAAACTC
1 TTTAAAAATAAAAACTA
6969931 TTTAAAA
1 TTTAAAA
6969938 TTTTAAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (17 bp):
TTTAAAAATAAAAACTA
Found at i:6977118 original size:36 final size:36
Alignment explanation
Indices: 6977050--6977119 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
6977040 GAAAGTACCG
* *
6977050 AAGGAACCAACCTGAGTGAAAACAATCTAAGTCCAC
1 AAGGAACAAACCTGAGTGAAAACAATCCAAGTCCAC
*
6977086 AAGGAACAAACCTGAGTGAGAACACA-CCAAGTCC
1 AAGGAACAAACCTGAGTGAAAACA-ATCCAAGTCC
6977120 TTCAGAGATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
36 29 0.97
37 1 0.03
ACGTcount: A:0.44, C:0.26, G:0.19, T:0.11
Consensus pattern (36 bp):
AAGGAACAAACCTGAGTGAAAACAATCCAAGTCCAC
Found at i:6977154 original size:36 final size:37
Alignment explanation
Indices: 6977109--6977192 Score: 102
Period size: 36 Copynumber: 2.3 Consensus size: 37
6977099 GAGTGAGAAC
* * *
6977109 ACACCAAGTCCTTC-AGAGATTAA-CTCGGAGGGAAAA
1 ACACAAAGTCCTTCTAGAGA-TAAGCCCAGAGGGAAAA
*
6977145 ACACAAAGTCC-TCTAGAGATAAGCCCAGAGGGGAAA
1 ACACAAAGTCCTTCTAGAGATAAGCCCAGAGGGAAAA
6977181 ACACAAAGTCCT
1 ACACAAAGTCCT
6977193 CAAGGTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
35 5 0.12
36 36 0.88
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.14
Consensus pattern (37 bp):
ACACAAAGTCCTTCTAGAGATAAGCCCAGAGGGAAAA
Found at i:6977338 original size:108 final size:108
Alignment explanation
Indices: 6977250--6977487 Score: 289
Period size: 108 Copynumber: 2.2 Consensus size: 108
6977240 CGGCAATGAT
* * * * **
6977250 GACACACAAAGTCCTCAGAAGAGAAGCCATGATGCAAACATGAGTAGTCCTCAATGTATAAA-CA
1 GACACACAAAGTCCTCAAAAGAAAAACCACGATGCAAACATGAGTAGTCCTCAACATATAAATC-
*
6977314 ATAATGAAGATGCACAAAAACCTCAAGATATAATCTGGAATGGA
65 ATAATGAAGATGCACAAAAACCTCAAGATATAAGCTGGAATGGA
** * *
6977358 GGTACACAAAGTCCTCAAAAGAAAAACCGCGATGCAAACATGAGTAGTCCTCAACATATAAATCC
1 GACACACAAAGTCCTCAAAAGAAAAACCACGATGCAAACATGAGTAGTCCTCAACATATAAATCA
* * * * * *
6977423 TAATGAAGATGCACAGAAAGCTCGAGATATAAACCGGAATGAA
66 TAATGAAGATGCACAAAAACCTCAAGATATAAGCTGGAATGGA
* *
6977466 GATACACAGAGTCCTCAAAAGA
1 GACACACAAAGTCCTCAAAAGA
6977488 TAAGCCGCAA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
108 110 0.99
109 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.17
Consensus pattern (108 bp):
GACACACAAAGTCCTCAAAAGAAAAACCACGATGCAAACATGAGTAGTCCTCAACATATAAATCA
TAATGAAGATGCACAAAAACCTCAAGATATAAGCTGGAATGGA
Found at i:6988213 original size:16 final size:16
Alignment explanation
Indices: 6988194--6988236 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
6988184 TTATTATTTA
6988194 TTAAATAAAA-ATTAT
1 TTAAATAAAATATTAT
*
6988209 CTTAATTAAAATATTAT
1 -TTAAATAAAATATTAT
*
6988226 TTCAATAAAAT
1 TTAAATAAAAT
6988237 GGTTAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAAATAAAATATTAT
Found at i:6989976 original size:25 final size:25
Alignment explanation
Indices: 6989948--6990003 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
6989938 TTTCAAATCG
6989948 AATCAAATCAATTT-GAATAAAATAA
1 AATCAAAT-AATTTGGAATAAAATAA
* ** *
6989973 AATCATATTGTTTGGAATCAAATAA
1 AATCAAATAATTTGGAATAAAATAA
6989998 AATCAA
1 AATCAA
6990004 GATATATGTC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (25 bp):
AATCAAATAATTTGGAATAAAATAA
Found at i:7000567 original size:34 final size:35
Alignment explanation
Indices: 7000512--7000578 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7000502 CAAACACCAG
*
7000512 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
7000547 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
7000579 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:7004260 original size:3 final size:3
Alignment explanation
Indices: 7004243--7004284 Score: 68
Period size: 3 Copynumber: 14.0 Consensus size: 3
7004233 CTCACCATCT
7004243 TTC TT- TTC TTTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
7004285 ATATCTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
3 32 0.86
4 3 0.08
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:7027775 original size:31 final size:31
Alignment explanation
Indices: 7027714--7027775 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
7027704 GGTGTATACG
*
7027714 TTATTATTAATTAATTAATTTCAAATCATAT
1 TTATTATTAATTAATTAATTTCAAAACATAT
* * *
7027745 TTATTATT-ATTTATTATTTTTAAAGACATAT
1 TTATTATTAATTAATTAATTTCAAA-ACATAT
7027776 GTATATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (31 bp):
TTATTATTAATTAATTAATTTCAAAACATAT
Found at i:7037172 original size:887 final size:889
Alignment explanation
Indices: 7035452--7038127 Score: 5108
Period size: 887 Copynumber: 3.0 Consensus size: 889
7035442 ATTTTAGACT
7035452 AAATGGATTGGTACTTGTGATGGAATGAGGATTTACAGATGTTTGGCCAAATGTTGGAGAAGAAC
1 AAATGGATTGGTACTTGTGATGGAATGAGGATTTACAGATGTTTGGCCAAATGTTGGAGAAGAAC
*
7035517 CACAAGGACTTGTAGGTGCAGTTGACACACCAGAGCAAATCTCTCCAGAAGGCTGAGAGGTTGGC
66 CACAAGGACTTGTAGGTGCAGTTGACACACCAGAGCAAATCTCTCCAGAAGGCTGAGCGGTTGGC
7035582 TGCAGTCCAACTGACAGTCAAATTATTACAGCAAGTTAGTCGATAATGAACATGGGAAAGAATAA
131 TGCAGTCCAACTGACAGTCAAATTATTACAGCAAGTTAGTCGATAATG-A-ATGGGAAAGAATAA
7035647 TGAATAACTT-CAGGTTTTCTTTAATATTTTACAAAGGTACCTTTATCTCCTAATTGATAATCCT
194 TGAATAACTTCCAGGTTTTC-TTAATATTTTACAAAGGTACCTTTATCTCCTAATTGATAATCCT
7035711 CCCATCTCAGCTCCTCATGACTTTTATCTTTGTAAACAGGCATAGCTGAAATTGACTCGAACATC
258 CCCATCTCAGCTCCTCATGACTTTTATCTTTGTAAACAGGCATAGCTGAAATTGACTCGAACATC
7035776 TGTGTACCAATGCTACTATCAGCGTCAATTGTAGGCGTGTAAGAAGCAACTCTTCTTCCCCCACG
323 TGTGTACCAATGCTACTATCAGCGTCAATTGTAGGCGTGTAAGAAGCAACTCTTCTTCCCCCACG
7035841 TTGAGCCCCAAAAGTTGACTGTCCAAATGCTGGTGCAGAAGATTGGGGTCCTACATGAGAACTCA
388 TTGAGCCCCAAAAGTTGACTGTCCAAATGCTGGTGCAGAAGATTGGGGTCCTACATGAGAACTCA
7035906 AAGAATTTTAAATAATATATATATGTATACGTATACGAACTCCCTTGACCTTAAATCATGTAAGG
453 AAGAATTTTAAATAATATATATATGTATAC-TATA-GAACTCCCTTGACCTTAAATCATGTAAGG
*
7035971 CCCATGAAAATATATATTTCTGCCTAACTGTACAGGTAGTTTCGAAGTCTATGATCAAGTAGGCT
516 CCCATGAAAATATATATTTCTGCCTAACTGTACAAGTAGTTTCGAAGTCTATGATCAAGTAGGCT
7036036 TGGTTACTCACCAAAAGAACTCTGTGCTCCAATTGTAGTTGTTCCAAAAGGACTACTGGCAAATG
581 TGGTTACTCACCAAAAGAACTCTGTGCTCCAATTGTAGTTGTTCCAAAAGGACTACTGGCAAATG
*
7036101 CTGGTGTTGATTGGCCAAAAGCAGCGCTAGACCCAGAGCTGAATGAAGGAGTAGAAGATGATCCA
646 CTGGTGTTGATTGGCCAAAAGCAGGGCTAGACCCAGAGCTGAATGAAGGAGTAGAAGATGATCCA
7036166 AAAGTAGGAGTGTCGGAAACGCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCTTGGAAGT
711 AAAGTAGGAGTGTCGGAAACGCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCTTGGAAGT
7036231 GCCAAAAGCAGAATTCGATGCTCCAACAGCATGAGTGAGAGAAGTGCCAAAAGCTGGTGCGCTTG
776 GCCAAAAGCAGAATTCGATGCTCCAACAGCATGAGTGAGAGAAGTGCCAAAAGCTGGTGCGCTTG
7036296 ATGCTCCAAATGTGCCTACTGTTCCAAATACCGGGGAATTAGATACACC
841 ATGCTCCAAATGTGCCTACTGTTCCAAATACCGGGGAATTAGATACACC
*
7036345 AAATGGATTGGTACTTGTGATGGAATGAGGATTTACAGATGTTTGGCCAAATGTTGGAGAAGAGC
1 AAATGGATTGGTACTTGTGATGGAATGAGGATTTACAGATGTTTGGCCAAATGTTGGAGAAGAAC
7036410 CACAAGGACTTGTAGGTGCAGTTGACACACCAGAGCAAATCTCTCCAGAAGGCTGAGCGGTTGGC
66 CACAAGGACTTGTAGGTGCAGTTGACACACCAGAGCAAATCTCTCCAGAAGGCTGAGCGGTTGGC
7036475 TGCAGTCCAACTGACAGTCAAATTATTACAGCAAGTTAGTCGATAATGAATGGGAAAGAATAATG
131 TGCAGTCCAACTGACAGTCAAATTATTACAGCAAGTTAGTCGATAATGAATGGGAAAGAATAATG
7036540 AATAACTTCCAGGTTTTCTTAATATTTTACAAAGGTACCTTTATCTCCTAATTGATAATCCTCCC
196 AATAACTTCCAGGTTTTCTTAATATTTTACAAAGGTACCTTTATCTCCTAATTGATAATCCTCCC
7036605 ATCTCAGCTCCTCATGACTTTTATCTTTGTAAACAGGCATAGCTGAAATTGACTCGAACATCTGT
261 ATCTCAGCTCCTCATGACTTTTATCTTTGTAAACAGGCATAGCTGAAATTGACTCGAACATCTGT
7036670 GTACCAATGCTACTATCAGCGTCAATTGTAGGCGTGTAAGAAGCAACTCTTCTTCCCCCACGTTG
326 GTACCAATGCTACTATCAGCGTCAATTGTAGGCGTGTAAGAAGCAACTCTTCTTCCCCCACGTTG
**
7036735 AGCCCCAAAAGTTGACTGTCCAAATGCTGGTGCAGAAGATCAGGGTCCTACATGAGAACTCAAAG
391 AGCCCCAAAAGTTGACTGTCCAAATGCTGGTGCAGAAGATTGGGGTCCTACATGAGAACTCAAAG
*
7036800 AATTTTAAATAATATATATACGTATA-TAT-GAACTCCCTTGACCTTAAATCATGTAAGGCCCAT
456 AATTTTAAATAATATATATATGTATACTATAGAACTCCCTTGACCTTAAATCATGTAAGGCCCAT
7036863 GAAAATATATATTTCTGCCTAACTGTACAAGTAGTTTCGAAGTCTATGATCAAGTAGGCTTGGTT
521 GAAAATATATATTTCTGCCTAACTGTACAAGTAGTTTCGAAGTCTATGATCAAGTAGGCTTGGTT
7036928 ACTCACCAAAAGAACTCTGTGCTCCAATTGTAGTTGTTCCAAAAGGACTACTGGCAAATGCTGGT
586 ACTCACCAAAAGAACTCTGTGCTCCAATTGTAGTTGTTCCAAAAGGACTACTGGCAAATGCTGGT
*
7036993 GTTGATTGGTCAAAAGCAGGGCTAGACCCAGAGCTGAATGAAGGAGTAGAAGATGATCCAAAAGT
651 GTTGATTGGCCAAAAGCAGGGCTAGACCCAGAGCTGAATGAAGGAGTAGAAGATGATCCAAAAGT
*
7037058 AGGAGTGTCGGAAACGCCAAAACCAGAATTTGACACTCCAAAAACAGGAGTCTTGGAAGTGCCAA
716 AGGAGTGTCGGAAACGCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCTTGGAAGTGCCAA
7037123 AAGCAGAATTCGATGCTCCAACAGCATGAGTGAGAGAAGTGCCAAAAGCTGGTGCGCTTGATGCT
781 AAGCAGAATTCGATGCTCCAACAGCATGAGTGAGAGAAGTGCCAAAAGCTGGTGCGCTTGATGCT
7037188 CCAAATGTGCCTACTGTTCCAAATACCGGGGAATTAGATACACC
846 CCAAATGTGCCTACTGTTCCAAATACCGGGGAATTAGATACACC
7037232 AAATGGATTGGTACTTGTGATGGAATGAGGATTTACAGATGTTTGGCCAAATGTTGGAGAAGAAC
1 AAATGGATTGGTACTTGTGATGGAATGAGGATTTACAGATGTTTGGCCAAATGTTGGAGAAGAAC
7037297 CACAAGGACTTGTAGGTGCAGTTGACACACCAGAGCAAATCTCTCCAGAAGGCTGAGCGGTTGGC
66 CACAAGGACTTGTAGGTGCAGTTGACACACCAGAGCAAATCTCTCCAGAAGGCTGAGCGGTTGGC
7037362 TGCAGTCCAACTGACAGTCAAATTATTACAGCAAGTTAGTCGATAATGAATGGGAAAGAATAATG
131 TGCAGTCCAACTGACAGTCAAATTATTACAGCAAGTTAGTCGATAATGAATGGGAAAGAATAATG
*
7037427 AATAACTTCCAGGTTTTCTTAATATTTTACAAAGGTACCTTTGTCTCCTAATTGATAATCCTCCC
196 AATAACTTCCAGGTTTTCTTAATATTTTACAAAGGTACCTTTATCTCCTAATTGATAATCCTCCC
7037492 ATCTCAGCTCCTCATGACTTTTATCTTTGTAAACAGGCATAGCTGAAATTGACTCGAACATCTGT
261 ATCTCAGCTCCTCATGACTTTTATCTTTGTAAACAGGCATAGCTGAAATTGACTCGAACATCTGT
7037557 GTACCAATGCTACTATCAGCGTCAATTGTAGGCGTGTAAGAAGCAACTCTTCTTCCCCCACGTTG
326 GTACCAATGCTACTATCAGCGTCAATTGTAGGCGTGTAAGAAGCAACTCTTCTTCCCCCACGTTG
7037622 AGCCCCAAAAGTTGACTGTCCAAATGCTGGTGCAGAAGATTGGGGTCCTACATGAGAACTCAAAG
391 AGCCCCAAAAGTTGACTGTCCAAATGCTGGTGCAGAAGATTGGGGTCCTACATGAGAACTCAAAG
7037687 AATTTTAAATAATATATATATGTATACGTATACGAACTCCCTTGACCTTAAATCATGTAAGGCCC
456 AATTTTAAATAATATATATATGTATAC-TATA-GAACTCCCTTGACCTTAAATCATGTAAGGCCC
*
7037752 ATGAAAATATATATTTCTGCCTAACTGTACAAGTAGTTTCAAAGTCTATGATCAAGTAGGCTTGG
519 ATGAAAATATATATTTCTGCCTAACTGTACAAGTAGTTTCGAAGTCTATGATCAAGTAGGCTTGG
*
7037817 TTACTCACCAAAAGAACTCTGTGCTCCAATTGTAGTTGTTCCAAAAGGACTACTGGAAAATGCTG
584 TTACTCACCAAAAGAACTCTGTGCTCCAATTGTAGTTGTTCCAAAAGGACTACTGGCAAATGCTG
*
7037882 GTGTTGATTGGCCAAAAGCAGGGCTAGACCCAGAGCTGAATAAAGGAGTAGAAGATGATCCAAAA
649 GTGTTGATTGGCCAAAAGCAGGGCTAGACCCAGAGCTGAATGAAGGAGTAGAAGATGATCCAAAA
7037947 GTAGGAGTGTCGGAAACGCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCTTGGAAGTGCC
714 GTAGGAGTGTCGGAAACGCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCTTGGAAGTGCC
*
7038012 AAAAGCAGAATTTGATGCTCCAA-ATGCATGAGTGAGAGAAGTGCCAAAAGCTGGTGCGCTTGAT
779 AAAAGCAGAATTCGATGCTCCAACA-GCATGAGTGAGAGAAGTGCCAAAAGCTGGTGCGCTTGAT
* *
7038076 GCTCCAAATGTGCCTACTGTTCCAAATACCGGAGAATTAGACACACC
843 GCTCCAAATGTGCCTACTGTTCCAAATACCGGGGAATTAGATACACC
7038123 AAATG
1 AAATG
7038128 CAGTTCCAGT
Statistics
Matches: 1755, Mismatches: 22, Indels: 14
0.98 0.01 0.01
Matches are distributed among these distances:
887 875 0.50
889 6 0.00
890 1 0.00
891 687 0.39
892 10 0.01
893 176 0.10
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (889 bp):
AAATGGATTGGTACTTGTGATGGAATGAGGATTTACAGATGTTTGGCCAAATGTTGGAGAAGAAC
CACAAGGACTTGTAGGTGCAGTTGACACACCAGAGCAAATCTCTCCAGAAGGCTGAGCGGTTGGC
TGCAGTCCAACTGACAGTCAAATTATTACAGCAAGTTAGTCGATAATGAATGGGAAAGAATAATG
AATAACTTCCAGGTTTTCTTAATATTTTACAAAGGTACCTTTATCTCCTAATTGATAATCCTCCC
ATCTCAGCTCCTCATGACTTTTATCTTTGTAAACAGGCATAGCTGAAATTGACTCGAACATCTGT
GTACCAATGCTACTATCAGCGTCAATTGTAGGCGTGTAAGAAGCAACTCTTCTTCCCCCACGTTG
AGCCCCAAAAGTTGACTGTCCAAATGCTGGTGCAGAAGATTGGGGTCCTACATGAGAACTCAAAG
AATTTTAAATAATATATATATGTATACTATAGAACTCCCTTGACCTTAAATCATGTAAGGCCCAT
GAAAATATATATTTCTGCCTAACTGTACAAGTAGTTTCGAAGTCTATGATCAAGTAGGCTTGGTT
ACTCACCAAAAGAACTCTGTGCTCCAATTGTAGTTGTTCCAAAAGGACTACTGGCAAATGCTGGT
GTTGATTGGCCAAAAGCAGGGCTAGACCCAGAGCTGAATGAAGGAGTAGAAGATGATCCAAAAGT
AGGAGTGTCGGAAACGCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCTTGGAAGTGCCAA
AAGCAGAATTCGATGCTCCAACAGCATGAGTGAGAGAAGTGCCAAAAGCTGGTGCGCTTGATGCT
CCAAATGTGCCTACTGTTCCAAATACCGGGGAATTAGATACACC
Found at i:7037991 original size:21 final size:20
Alignment explanation
Indices: 7037965--7038026 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
7037955 GTCGGAAACG
7037965 CCAAAAGCAGAATTTGACACT
1 CCAAAAGCAGAATTTGA-ACT
* * *
7037986 CCAAAAACAGGAGTCTTGGAAGT
1 CCAAAAGCA-GAAT-TT-GAACT
7038009 GCCAAAAGCAGAATTTGA
1 -CCAAAAGCAGAATTTGA
7038027 TGCTCCAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
21 10 0.31
22 5 0.16
23 7 0.22
24 10 0.31
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (20 bp):
CCAAAAGCAGAATTTGAACT
Found at i:7037991 original size:45 final size:45
Alignment explanation
Indices: 7037940--7038035 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
7037930 TAGAAGATGA
** *
7037940 TCCAAAAGTAGGAGTGTCGGAAACGCCAAAAGCAGAATTTGACAC
1 TCCAAAAACAGGAGTCTCGGAAACGCCAAAAGCAGAATTTGACAC
* ** **
7037985 TCCAAAAACAGGAGTCTTGGAAGTGCCAAAAGCAGAATTTGATGC
1 TCCAAAAACAGGAGTCTCGGAAACGCCAAAAGCAGAATTTGACAC
7038030 TCCAAA
1 TCCAAA
7038036 TGCATGAGTG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.18
Consensus pattern (45 bp):
TCCAAAAACAGGAGTCTCGGAAACGCCAAAAGCAGAATTTGACAC
Found at i:7038053 original size:45 final size:45
Alignment explanation
Indices: 7037964--7038062 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
7037954 TGTCGGAAAC
**
7037964 GCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCTTGGAAGT
1 GCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCGAGGAAGT
** ** *
7038009 GCCAAAAGCAGAATTTGATGCTCCAAATGCATGAGT-GAGAGAAGT
1 GCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCGAG-GAAGT
7038054 GCCAAAAGC
1 GCCAAAAGC
7038063 TGGTGCGCTT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
44 1 0.02
45 45 0.98
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.17
Consensus pattern (45 bp):
GCCAAAAGCAGAATTTGACACTCCAAAAACAGGAGTCGAGGAAGT
Found at i:7038215 original size:24 final size:24
Alignment explanation
Indices: 7038165--7038223 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
7038155 TTCCAGTTGA
*
7038165 ACCGAAGGCAGGAGTGCTTGTGAC
1 ACCGAAGGCAGGAGTGCTTGAGAC
*
7038189 ACCGAAAGCAGGAGTGCTTGCAG-C
1 ACCGAAGGCAGGAGTGCTTG-AGAC
7038213 ACCGAAGGCAG
1 ACCGAAGGCAG
7038224 AAGTACTGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 30 0.97
25 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.36, T:0.12
Consensus pattern (24 bp):
ACCGAAGGCAGGAGTGCTTGAGAC
Found at i:7040236 original size:20 final size:19
Alignment explanation
Indices: 7040211--7040251 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
7040201 ATAAAATATT
7040211 TATTTTAAATATATAAACTA
1 TATTTTAAATATATAAA-TA
*
7040231 TATTTTAAATATTTAAATA
1 TATTTTAAATATATAAATA
7040250 TA
1 TA
7040252 ACCATTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TATTTTAAATATATAAATA
Found at i:7041810 original size:26 final size:24
Alignment explanation
Indices: 7041762--7041807 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7041752 AATAAATTAT
*
7041762 ATATATAAATAGATTTAAAAGAAG
1 ATATATAAACAGATTTAAAAGAAG
*
7041786 ATATATAAACATATTTAAAAGA
1 ATATATAAACAGATTTAAAAGA
7041808 GAATTTAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (24 bp):
ATATATAAACAGATTTAAAAGAAG
Found at i:7042192 original size:46 final size:46
Alignment explanation
Indices: 7042131--7042236 Score: 126
Period size: 46 Copynumber: 2.3 Consensus size: 46
7042121 ATACTAATAC
* * *
7042131 ATGATAACTTT-AAATAA-AATACATGATAAACTTAAAATAATGTTA
1 ATGATAAATTTAAAATAATAATACATGATAAA-TTAAAATAATATCA
* * *
7042176 ATGATAAATTTAAAATAATAATATATTATAAATTAAAATAATATCG
1 ATGATAAATTTAAAATAATAATACATGATAAATTAAAATAATATCA
*
7042222 ATGATAAGTTTAAAA
1 ATGATAAATTTAAAA
7042237 ATATATTAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
45 10 0.19
46 31 0.60
47 11 0.21
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.35
Consensus pattern (46 bp):
ATGATAAATTTAAAATAATAATACATGATAAATTAAAATAATATCA
Found at i:7042217 original size:23 final size:24
Alignment explanation
Indices: 7042118--7042218 Score: 111
Period size: 23 Copynumber: 4.4 Consensus size: 24
7042108 TGATAAGTTC
*
7042118 AAAATACTAATACATGAT-AACTT
1 AAAATAATAATACATGATAAACTT
*
7042141 TAAATAA-AATACATGATAAACTT
1 AAAATAATAATACATGATAAACTT
** *
7042164 AAAATAATGTTA-ATGATAAATTT
1 AAAATAATAATACATGATAAACTT
* *
7042187 AAAATAATAATATATTATAAA-TT
1 AAAATAATAATACATGATAAACTT
7042210 AAAATAATA
1 AAAATAATA
7042219 TCGATGATAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
22 10 0.15
23 47 0.71
24 9 0.14
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (24 bp):
AAAATAATAATACATGATAAACTT
Found at i:7042234 original size:23 final size:22
Alignment explanation
Indices: 7042125--7042236 Score: 86
Period size: 23 Copynumber: 5.0 Consensus size: 22
7042115 TTCAAAATAC
*
7042125 TAATA-CATGATAACTTT-AAA
1 TAATATCATGATAAATTTAAAA
* *
7042145 TAAAATACATGATAAACTTAAAA
1 TAATAT-CATGATAAATTTAAAA
* *
7042168 TAATGTTAATGATAAATTTAAAA
1 TAAT-ATCATGATAAATTTAAAA
* *
7042191 TAATAATATATTATAAA-TTAAAA
1 TAAT-AT-CATGATAAATTTAAAA
*
7042214 TAATATCGATGATAAGTTTAAAA
1 TAATATC-ATGATAAATTTAAAA
7042237 ATATATTAAG
Statistics
Matches: 71, Mismatches: 14, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
20 4 0.06
22 18 0.25
23 41 0.58
24 8 0.11
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.35
Consensus pattern (22 bp):
TAATATCATGATAAATTTAAAA
Found at i:7042281 original size:23 final size:22
Alignment explanation
Indices: 7042157--7042289 Score: 51
Period size: 23 Copynumber: 5.8 Consensus size: 22
7042147 AAATACATGA
*
7042157 TAAACTTAAAATAATGTTA-ATG
1 TAAAATTAAAATAAT-TTAGATG
* * *
7042179 ATAAATTTAAAATAATAATATAT-
1 -TAAAATTAAAATAAT-TTAGATG
* *
7042202 TATAAATTAAAATAATATCGATG
1 TA-AAATTAAAATAATTTAGATG
** * *
7042225 ATAAGTTTAAAAATATATTAAGCTG
1 -TAAAATT-AAAATA-ATTTAGATG
7042250 -AAACA-TAAAATAATGTTAGATG
1 TAAA-ATTAAAATAAT-TTAGATG
7042272 TAAAATT-AAATATATTTA
1 TAAAATTAAAATA-ATTTA
7042290 AAACAGAATA
Statistics
Matches: 83, Mismatches: 16, Indels: 23
0.68 0.13 0.19
Matches are distributed among these distances:
21 2 0.02
22 26 0.31
23 40 0.48
24 10 0.12
25 5 0.06
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (22 bp):
TAAAATTAAAATAATTTAGATG
Found at i:7042437 original size:91 final size:91
Alignment explanation
Indices: 7042330--7042514 Score: 343
Period size: 91 Copynumber: 2.0 Consensus size: 91
7042320 GAAATAAATA
*
7042330 AAAAAACCAAGCATATTAAATAGGCAAGCATTAAATTAAATTAACAACAAAATTAAAGGAAAAAA
1 AAAAAACCAAGCATATTAAATAGGCAAGCATTAAATTAAACTAACAACAAAATTAAAGGAAAAAA
7042395 TGAAAATAAAATAAAGCAAAGAGGCC
66 TGAAAATAAAATAAAGCAAAGAGGCC
* *
7042421 AAAAAACCAAGCATATTAAATAGGTAAGGATTAAATTAAACTAACAACAAAATTAAAGGAAAAAA
1 AAAAAACCAAGCATATTAAATAGGCAAGCATTAAATTAAACTAACAACAAAATTAAAGGAAAAAA
7042486 TGAAAATAAAATAAAGCAAAGAGGCC
66 TGAAAATAAAATAAAGCAAAGAGGCC
7042512 AAA
1 AAA
7042515 TGTAATACGT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.61, C:0.10, G:0.12, T:0.16
Consensus pattern (91 bp):
AAAAAACCAAGCATATTAAATAGGCAAGCATTAAATTAAACTAACAACAAAATTAAAGGAAAAAA
TGAAAATAAAATAAAGCAAAGAGGCC
Found at i:7044282 original size:16 final size:18
Alignment explanation
Indices: 7044261--7044294 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
7044251 CCATTCTTTA
7044261 AAAAACA-TAAA-AAAAT
1 AAAAACATTAAACAAAAT
7044277 AAAAACATTAAACAAAAT
1 AAAAACATTAAACAAAAT
7044295 TCTTGGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (18 bp):
AAAAACATTAAACAAAAT
Found at i:7044617 original size:19 final size:20
Alignment explanation
Indices: 7044595--7044643 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
7044585 GGTTTTTTCA
*
7044595 AATTTTTATATTTTT-AAGT
1 AATTTTTATATTTTTAAAAT
*
7044614 AATTTTGAT-TTTTTAAAAT
1 AATTTTTATATTTTTAAAAT
7044633 AATTTTTATAT
1 AATTTTTATAT
7044644 AGAATCGGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 5 0.20
19 19 0.76
20 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (20 bp):
AATTTTTATATTTTTAAAAT
Found at i:7047120 original size:23 final size:22
Alignment explanation
Indices: 7047068--7047120 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
7047058 TTAAATTACA
*
7047068 TTTTAGAATTTTAAAATTTTTT
1 TTTTATAATTTTAAAATTTTTT
* *
7047090 TTAATATAATTTTGAAATTTTATT
1 TT-TTATAATTTTAAAATTTT-TT
7047114 TTTTATA
1 TTTTATA
7047121 TAGTCACGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 2 0.08
23 19 0.76
24 4 0.16
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (22 bp):
TTTTATAATTTTAAAATTTTTT
Found at i:7054632 original size:21 final size:20
Alignment explanation
Indices: 7054602--7054640 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
7054592 AGGCATAGAT
7054602 TCCAACTTCAATTCTACGTA
1 TCCAACTTCAATTCTACGTA
7054622 TCCAAGCTTCAATTCTACG
1 TCCAA-CTTCAATTCTACG
7054641 CATCTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (20 bp):
TCCAACTTCAATTCTACGTA
Found at i:7063494 original size:18 final size:17
Alignment explanation
Indices: 7063473--7063519 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
7063463 ATATCTACTT
7063473 CTTTTATATTCTCTATTG
1 CTTTTATATTCTCT-TTG
* *
7063491 CTTTCATATTTTCTTTG
1 CTTTTATATTCTCTTTG
*
7063508 -TTTTTTATTCTC
1 CTTTTATATTCTC
7063520 CCCATCTCTC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
16 9 0.38
17 3 0.12
18 12 0.50
ACGTcount: A:0.13, C:0.17, G:0.04, T:0.66
Consensus pattern (17 bp):
CTTTTATATTCTCTTTG
Found at i:7068534 original size:27 final size:27
Alignment explanation
Indices: 7068504--7068557 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
7068494 TTTTGAAAAG
*
7068504 TTAT-ATTTTAGTTCAATTAGATTTTTT
1 TTATAATTTGAGTTC-ATTAGATTTTTT
* *
7068531 TTATAATTTGATTTCATTATATTTTTT
1 TTATAATTTGAGTTCATTAGATTTTTT
7068558 AATTTAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.65
Consensus pattern (27 bp):
TTATAATTTGAGTTCATTAGATTTTTT
Found at i:7070286 original size:23 final size:22
Alignment explanation
Indices: 7070260--7070304 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7070250 TTATATTGCG
7070260 AAATTAGCCATTTTTAAATTAAA
1 AAATT-GCCATTTTTAAATTAAA
** *
7070283 AAATTGGGATTTTTGAATTAAA
1 AAATTGCCATTTTTAAATTAAA
7070305 TTCAGGATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.40
Consensus pattern (22 bp):
AAATTGCCATTTTTAAATTAAA
Found at i:7072970 original size:341 final size:339
Alignment explanation
Indices: 7072347--7073267 Score: 1492
Period size: 341 Copynumber: 2.7 Consensus size: 339
7072337 CTTTTTCGTT
*
7072347 TGCAGGTCACAGAAGCTGAAGCTGCAGAACAGACTTCTAGCTCTGATGAGTCAGAGAAGAATATT
1 TGCAGGTCACAGAAGCTGAAGCTGCAGGACAGACTTCTAGCTCTGATGAGTCAGAGAAGAATATT
* *
7072412 GTAAATCAAGGCACTGCACCAAGAAGAATACGCTTGCAAACGAAACTTTCTACTGGGGCAATGAA
66 GTAAATCAAGGCACTGCTCCAAGAAGAATACGCTTGCAAAC--AACTTTCTACTGGGCCAATGAA
* * *
7072477 AGGTTCTGCAGGCTGTGACAATGGTGGGAACATGACTAGTCCTGGCCTCGTTGAAGAAGAAGTTC
129 AGGTTCTGCAGGCTGTGTCGATGGTGGGAACATGACAAGTCCTGGCCTCGTTGAAGAAGAAGTTC
7072542 AATCTGCTCTTACTGAGGTAGAGTTACCAGGAAAAGCTAATTTTGAGCACTGTTGATATACTGTT
194 AATCTGCTCTTACTGAGGTAGAGTTACCAGGAAAAGCTAATTTTGAGCACTGTTGATATACTGTT
* *
7072607 TTTACTGCTAAAGGCCAAATTATAATATTAGTACACTGAAATACATTTCTGAAAGTGAACAATAT
259 TTTACTGCCAAAGGCCAAATTATAATATTAGTACACTGAAATACATTTCTCAAAGTGAACAATAT
*
7072672 CTTCCAATACTTTGAA
324 CTTCCAATACTTTAAA
* * * *
7072688 TGCAGGTCACAGAAGCTGAAGCTGCTGGACTGACTTCTAGCTCAGATGAGTTAGAGAAGAATATT
1 TGCAGGTCACAGAAGCTGAAGCTGCAGGACAGACTTCTAGCTCTGATGAGTCAGAGAAGAATATT
*
7072753 GTAAATCAAGGCACTGCTCCAAGAAGAATACGCTTGCAAACTAATCTTTCTACTGGACCAATGAA
66 GTAAATCAAGGCACTGCTCCAAGAAGAATACGCTTGCAAAC-AA-CTTTCTACTGGGCCAATGAA
* * *
7072818 AGGTTCTGCAGGCTGCGTCGATGGTGGGAGCATGACAAGTCCTGGTCTCGTTGAAGAAGAAGTTC
129 AGGTTCTGCAGGCTGTGTCGATGGTGGGAACATGACAAGTCCTGGCCTCGTTGAAGAAGAAGTTC
7072883 AATCTGCTCTTACTGAGGTAGAGTTACCAGGAAAAGCTAATTTTGAGCACTGTTGATATACTGTT
194 AATCTGCTCTTACTGAGGTAGAGTTACCAGGAAAAGCTAATTTTGAGCACTGTTGATATACTGTT
*
7072948 TTTACTGCCAAAGGCCAAATTATAATATTAGTACACTGACATACATTTCTCAAAGTGAACAATAT
259 TTTACTGCCAAAGGCCAAATTATAATATTAGTACACTGAAATACATTTCTCAAAGTGAACAATAT
7073013 CTTCCAATACTTTAAA
324 CTTCCAATACTTTAAA
7073029 TGCAGGTCACAGAAGCTGAAGCTGCAGGACAGACTTCTAGCTCTGATGAGTCAGAGAAGAATATT
1 TGCAGGTCACAGAAGCTGAAGCTGCAGGACAGACTTCTAGCTCTGATGAGTCAGAGAAGAATATT
* * * * *
7073094 GTAAACCAAGCCATTGCTCCAAGAAGAATACGTTTG----CAACTTTCTACTGGGCCAATGAATG
66 GTAAATCAAGGCACTGCTCCAAGAAGAATACGCTTGCAAACAACTTTCTACTGGGCCAATGAAAG
* * *
7073155 GTTCCGCAGGCTGTGTCGATGGTGGGAACATGACAAGTCCTGGCCTCGGTAAAGAAGAAGTTCAA
131 GTTCTGCAGGCTGTGTCGATGGTGGGAACATGACAAGTCCTGGCCTCGTTGAAGAAGAAGTTCAA
* ** * *
7073220 TCTGCTCTAACTGAGGTAGAGGAACTAGGAAAAGTTAATTTT-AGCACT
196 TCTGCTCTTACTGAGGTAGAGTTACCAGGAAAAGCTAATTTTGAGCACT
7073268 ATTCGTATAC
Statistics
Matches: 539, Mismatches: 40, Indels: 9
0.92 0.07 0.02
Matches are distributed among these distances:
334 6 0.01
335 116 0.22
336 2 0.00
337 1 0.00
340 2 0.00
341 412 0.76
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (339 bp):
TGCAGGTCACAGAAGCTGAAGCTGCAGGACAGACTTCTAGCTCTGATGAGTCAGAGAAGAATATT
GTAAATCAAGGCACTGCTCCAAGAAGAATACGCTTGCAAACAACTTTCTACTGGGCCAATGAAAG
GTTCTGCAGGCTGTGTCGATGGTGGGAACATGACAAGTCCTGGCCTCGTTGAAGAAGAAGTTCAA
TCTGCTCTTACTGAGGTAGAGTTACCAGGAAAAGCTAATTTTGAGCACTGTTGATATACTGTTTT
TACTGCCAAAGGCCAAATTATAATATTAGTACACTGAAATACATTTCTCAAAGTGAACAATATCT
TCCAATACTTTAAA
Found at i:7077883 original size:2 final size:2
Alignment explanation
Indices: 7077876--7077905 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7077866 ATTAAAAGTA
7077876 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7077906 TTCATCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7103232 original size:20 final size:20
Alignment explanation
Indices: 7103207--7103247 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7103197 GGTAGAGCAA
7103207 CCCTAATAGCTAGACGGTAT
1 CCCTAATAGCTAGACGGTAT
7103227 CCCTAATAGCTAGACGGTAT
1 CCCTAATAGCTAGACGGTAT
7103247 C
1 C
7103248 GACCATCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (20 bp):
CCCTAATAGCTAGACGGTAT
Found at i:7112669 original size:101 final size:101
Alignment explanation
Indices: 7112494--7112687 Score: 379
Period size: 101 Copynumber: 1.9 Consensus size: 101
7112484 TTTTTTATGG
7112494 TTAAGTTTTACAAATCAAGTCTGCCATGGTTGAATCTTCGTCCGGTAAACAGGGCGAAATAGAAA
1 TTAAGTTTTACAAATCAAGTCTGCCATGGTTGAATCTTCGTCCGGTAAACAGGGCGAAATAGAAA
*
7112559 AAAAATTTAGGGTTTGAAATAAAATTTTTATAAATT
66 AAAAATTTAGGGTTGGAAATAAAATTTTTATAAATT
7112595 TTAAGTTTTACAAATCAAGTCTGCCATGGTTGAATCTTCGTCCGGTAAACAGGGCGAAATAGAAA
1 TTAAGTTTTACAAATCAAGTCTGCCATGGTTGAATCTTCGTCCGGTAAACAGGGCGAAATAGAAA
7112660 AAAAATTTAGGGTTGGAAATAAAATTTT
66 AAAAATTTAGGGTTGGAAATAAAATTTT
7112688 AATATTATAA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 92 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.31
Consensus pattern (101 bp):
TTAAGTTTTACAAATCAAGTCTGCCATGGTTGAATCTTCGTCCGGTAAACAGGGCGAAATAGAAA
AAAAATTTAGGGTTGGAAATAAAATTTTTATAAATT
Found at i:7112764 original size:29 final size:30
Alignment explanation
Indices: 7112695--7112762 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
7112685 TTTAATATTA
*
7112695 TAAATTTTTATAATTTTTAAAAGATTAAAT
1 TAAATTTTTATAATTTTTAAAAGATTAAAG
*
7112725 TAAATTTTTATAA-TTTTAAAGGATTAAAG
1 TAAATTTTTATAATTTTTAAAAGATTAAAG
7112754 TATAATTTT
1 TA-AATTTT
7112763 ATTTTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 16 0.46
30 19 0.54
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (30 bp):
TAAATTTTTATAATTTTTAAAAGATTAAAG
Found at i:7127614 original size:18 final size:19
Alignment explanation
Indices: 7127591--7127626 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7127581 AATGATTTGA
7127591 AAAATAT-AAAAACAAATT
1 AAAATATCAAAAACAAATT
*
7127609 AAAATATCTAAAACAAAT
1 AAAATATCAAAAACAAAT
7127627 CGAAAAACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATATCAAAAACAAATT
Found at i:7134178 original size:15 final size:15
Alignment explanation
Indices: 7134158--7134189 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7134148 CGAAAACTAA
7134158 AAGAAAAAGGAGATC
1 AAGAAAAAGGAGATC
7134173 AAGAAAAAGGAGATC
1 AAGAAAAAGGAGATC
7134188 AA
1 AA
7134190 TAATTTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.06, G:0.25, T:0.06
Consensus pattern (15 bp):
AAGAAAAAGGAGATC
Found at i:7135765 original size:3 final size:3
Alignment explanation
Indices: 7135751--7135808 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
7135741 AAAAGTTGAT
*
7135751 TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7135799 TAA TAA TAA T
1 TAA TAA TAA T
7135809 TAAGAAACAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7149271 original size:14 final size:14
Alignment explanation
Indices: 7149254--7149280 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7149244 AATTTCCTTC
7149254 AAAAAAATTTAATT
1 AAAAAAATTTAATT
7149268 AAAAAAATTTAAT
1 AAAAAAATTTAAT
7149281 AGAACTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAAAAATTTAATT
Found at i:7162722 original size:80 final size:81
Alignment explanation
Indices: 7162637--7162817 Score: 217
Period size: 81 Copynumber: 2.2 Consensus size: 81
7162627 AAGTGTTTCG
* *
7162637 GAAATGAAATAAAATAACTAATAATTGTTCCGA-AAAATGAA-AAAA-TTATTGCAACACCAAAC
1 GAAATGAAATAAAATAAATAATAATTATT-CGAGAAAAT-AACAAAATTTATTGCAACACCAAAC
**
7162699 TCAAGTTCAAGTGCCCCGA
64 TCAAGCCCAAGTG-CCCGA
* * * *
7162718 -AAATGAAATAGAATAAATAATAATTATTCTAGAAAATAACAAAATTTATTGCACCACCTAACTC
1 GAAATGAAATAAAATAAATAATAATTATTCGAGAAAATAACAAAATTTATTGCAACACCAAACTC
*
7162782 AAGCCCAAGTGCCCTA
66 AAGCCCAAGTGCCCGA
*
7162798 GAAATTAAATAAAATAAATA
1 GAAATGAAATAAAATAAATA
7162818 TTTATTATAA
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
79 4 0.05
80 38 0.45
81 43 0.51
ACGTcount: A:0.50, C:0.16, G:0.10, T:0.24
Consensus pattern (81 bp):
GAAATGAAATAAAATAAATAATAATTATTCGAGAAAATAACAAAATTTATTGCAACACCAAACTC
AAGCCCAAGTGCCCGA
Found at i:7170675 original size:16 final size:17
Alignment explanation
Indices: 7170634--7170677 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
7170624 GAAAATAGCA
7170634 AAAAAAACTTGAAAAATCT
1 AAAAAAA-TT-AAAAATCT
7170653 AAAAAAATTAAAAAT-T
1 AAAAAAATTAAAAATCT
*
7170669 AAGAAAATT
1 AAAAAAATT
7170678 TATAATATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
17 6 0.25
18 2 0.08
19 7 0.29
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (17 bp):
AAAAAAATTAAAAATCT
Found at i:7174361 original size:21 final size:20
Alignment explanation
Indices: 7174321--7174362 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
7174311 TTTATTAAAA
*
7174321 TTTACCATCAACTTTGATTT
1 TTTACCATCAACTTTAATTT
7174341 TTTACCACTCAA-TATTAATTT
1 TTTACCA-TCAACT-TTAATTT
7174362 T
1 T
7174363 GATGATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.29, C:0.19, G:0.02, T:0.50
Consensus pattern (20 bp):
TTTACCATCAACTTTAATTT
Found at i:7198928 original size:8 final size:8
Alignment explanation
Indices: 7198915--7198977 Score: 74
Period size: 8 Copynumber: 8.0 Consensus size: 8
7198905 CCCGATACAG
7198915 TTTCACAT
1 TTTCACAT
7198923 TTTCACAT
1 TTTCACAT
*
7198931 TTACACAT
1 TTTCACAT
*
7198939 ATTCA-AT
1 TTTCACAT
* *
7198946 TATCATAT
1 TTTCACAT
7198954 TTTCACAT
1 TTTCACAT
7198962 TTTCACAT
1 TTTCACAT
*
7198970 TTACACAT
1 TTTCACAT
7198978 ATATATTCAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
7 5 0.11
8 41 0.89
ACGTcount: A:0.32, C:0.22, G:0.00, T:0.46
Consensus pattern (8 bp):
TTTCACAT
Found at i:7201017 original size:124 final size:123
Alignment explanation
Indices: 7200798--7201044 Score: 458
Period size: 124 Copynumber: 2.0 Consensus size: 123
7200788 GCTTCTAAAA
*
7200798 CATCAAAATGAAGAGAAAATGACTAAATTTAGATTACCAATTAAACTGAAGCTTTAAAATCTCAA
1 CATCAAAATGAAGAGAAAAGGACTAAATTTAGATTACCAATTAAACTGAAGCTTTAAAATCTCAA
*
7200863 TTTCCCCTTTTCTTTTCTTTCCCTTTTTTCTTCCCCTGTTTTCGTCTCTTTCTCTGTT
66 TTTCCCCTTTTCTTTTCTTTCCCTTTTTTCTTCCCCTATTTTCGTCTCTTTCTCTGTT
*
7200921 CATCAAAATGAAGAGAAAAGGACTAAATTTAGCTTACCAATTAAACTTGAAGCTTTAAAATCTCA
1 CATCAAAATGAAGAGAAAAGGACTAAATTTAGATTACCAATTAAAC-TGAAGCTTTAAAATCTCA
7200986 ATTTCCCCTTTTCTTTTCTTTCCCTTTTTTCTTCCCCTATTTTCGTCTCTTTCTCTGTT
65 ATTTCCCCTTTTCTTTTCTTTCCCTTTTTTCTTCCCCTATTTTCGTCTCTTTCTCTGTT
7201045 TCTATTCTGT
Statistics
Matches: 120, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
123 44 0.37
124 76 0.63
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.43
Consensus pattern (123 bp):
CATCAAAATGAAGAGAAAAGGACTAAATTTAGATTACCAATTAAACTGAAGCTTTAAAATCTCAA
TTTCCCCTTTTCTTTTCTTTCCCTTTTTTCTTCCCCTATTTTCGTCTCTTTCTCTGTT
Found at i:7201280 original size:5 final size:5
Alignment explanation
Indices: 7201263--7201298 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
7201253 TATTTAATTT
* *
7201263 ATATA GTATA ATACA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA A
7201299 AACATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (5 bp):
ATATA
Found at i:7211928 original size:20 final size:20
Alignment explanation
Indices: 7211889--7211928 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7211879 AAAGAGATTA
*
7211889 ATTTATTTTTATATAAAAAT
1 ATTTATTTTTATAAAAAAAT
7211909 ATTTA-TTTTATAAAATAAAT
1 ATTTATTTTTATAAAA-AAAT
7211929 TGTATTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTTATTTTTATAAAAAAAT
Found at i:7217029 original size:71 final size:73
Alignment explanation
Indices: 7216913--7217057 Score: 276
Period size: 71 Copynumber: 2.0 Consensus size: 73
7216903 TTATAAATAA
7216913 ATAATATACCCAATTAAAATTTTTATTAAATCCTTTGGATTTCTTTCTAAATAAAAT-A-ATAAA
1 ATAATATACCCAATTAAAATTTTTATTAAATCCTTTGGATTTCTTTCTAAATAAAATAATATAAA
7216976 ATTTATAC
66 ATTTATAC
7216984 ATAATATACCCAATTAAAATTTTTATTAAATCCTTTGGATTTCTTTCTAAATAAAATAATATAAA
1 ATAATATACCCAATTAAAATTTTTATTAAATCCTTTGGATTTCTTTCTAAATAAAATAATATAAA
7217049 ATTTATAC
66 ATTTATAC
7217057 A
1 A
7217058 CTATTTAAAA
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
71 57 0.79
72 1 0.01
73 14 0.19
ACGTcount: A:0.44, C:0.11, G:0.03, T:0.42
Consensus pattern (73 bp):
ATAATATACCCAATTAAAATTTTTATTAAATCCTTTGGATTTCTTTCTAAATAAAATAATATAAA
ATTTATAC
Found at i:7221735 original size:42 final size:42
Alignment explanation
Indices: 7221645--7221738 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
7221635 GAGTTTCAGT
* * * * * *
7221645 TCAACCCTAATGGGTTTCCGTTCAGCTCTTTTGAGCTTCTGT
1 TCAACCCTTATCGATTTCCGTTCAGCTCTTATGAGCTTCCGG
* * *
7221687 TTAACCCTTATCGATTTTCGTTCAGTTCTTATGAGCTTCCGG
1 TCAACCCTTATCGATTTCCGTTCAGCTCTTATGAGCTTCCGG
7221729 TCAACCCTTA
1 TCAACCCTTA
7221739 CGGGTTTCTA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.17, C:0.27, G:0.16, T:0.40
Consensus pattern (42 bp):
TCAACCCTTATCGATTTCCGTTCAGCTCTTATGAGCTTCCGG
Found at i:7237572 original size:14 final size:14
Alignment explanation
Indices: 7237549--7237581 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
7237539 ACCTTCATTT
7237549 TTTCTC-CTTTTTC
1 TTTCTCTCTTTTTC
7237562 TTTCTCTCTTTTTC
1 TTTCTCTCTTTTTC
7237576 -TTCTCT
1 TTTCTCT
7237582 GTTTCCTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTCTCTCTTTTTC
Found at i:7238872 original size:25 final size:25
Alignment explanation
Indices: 7238805--7238926 Score: 83
Period size: 24 Copynumber: 4.9 Consensus size: 25
7238795 GAAACTTATA
* **
7238805 AGAGCCA-TAATCGGGAAGTTCAAG
1 AGAGCCATTAATCGGGAAGCTCTGG
* *
7238829 CGAGCCAAT-ATCGGGAAGCTCTGG
1 AGAGCCATTAATCGGGAAGCTCTGG
* *
7238853 AGAGCCATTAAT-GAGGAAGCTCAAGAA
1 AGAGCCATTAATCG-GGAAGCTC-TG-G
* *
7238880 AGAACCTTTAATCGGGAAGCTCTGG
1 AGAGCCATTAATCGGGAAGCTCTGG
7238905 AGAG-C-TGTATATCGGGAAGCTC
1 AGAGCCAT-TA-ATCGGGAAGCTC
7238927 ATAAGATTTG
Statistics
Matches: 77, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
23 1 0.01
24 29 0.38
25 26 0.34
26 2 0.03
27 18 0.23
28 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.30, T:0.19
Consensus pattern (25 bp):
AGAGCCATTAATCGGGAAGCTCTGG
Found at i:7240090 original size:47 final size:47
Alignment explanation
Indices: 7240021--7240160 Score: 280
Period size: 47 Copynumber: 3.0 Consensus size: 47
7240011 AAGGACCTCA
7240021 AATATTGAATTCCATAGCTTCTTGATCCCTTTAGCTACTAGAATTCT
1 AATATTGAATTCCATAGCTTCTTGATCCCTTTAGCTACTAGAATTCT
7240068 AATATTGAATTCCATAGCTTCTTGATCCCTTTAGCTACTAGAATTCT
1 AATATTGAATTCCATAGCTTCTTGATCCCTTTAGCTACTAGAATTCT
7240115 AATATTGAATTCCATAGCTTCTTGATCCCTTTAGCTACTAGAATTC
1 AATATTGAATTCCATAGCTTCTTGATCCCTTTAGCTACTAGAATTC
7240161 AACTTTAGCT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (47 bp):
AATATTGAATTCCATAGCTTCTTGATCCCTTTAGCTACTAGAATTCT
Found at i:7240168 original size:20 final size:20
Alignment explanation
Indices: 7240143--7240182 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7240133 TTCTTGATCC
7240143 CTTTAGCTACTAGAATTCAA
1 CTTTAGCTACTAGAATTCAA
7240163 CTTTAGCTACTAGAATTCAA
1 CTTTAGCTACTAGAATTCAA
7240183 TTAGACATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (20 bp):
CTTTAGCTACTAGAATTCAA
Found at i:7264073 original size:22 final size:22
Alignment explanation
Indices: 7264048--7264089 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7264038 TAACGCAAGG
7264048 TTTAAAAACATAAATATTAAAA
1 TTTAAAAACATAAATATTAAAA
*
7264070 TTTAAAAATATAAATATTAA
1 TTTAAAAACATAAATATTAA
7264090 TATTAAGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
TTTAAAAACATAAATATTAAAA
Found at i:7274376 original size:20 final size:20
Alignment explanation
Indices: 7274351--7274390 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7274341 ACTCTTTCTA
7274351 GAGGTTTTTTTACCTCTATC
1 GAGGTTTTTTTACCTCTATC
7274371 GAGGTTTTTTTACCTCTATC
1 GAGGTTTTTTTACCTCTATC
7274391 CATAAGGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.50
Consensus pattern (20 bp):
GAGGTTTTTTTACCTCTATC
Found at i:7283103 original size:25 final size:25
Alignment explanation
Indices: 7283072--7283150 Score: 149
Period size: 25 Copynumber: 3.2 Consensus size: 25
7283062 ATAAGCCCAG
7283072 ACATTTTCAAAATGCAGGCGAGACA
1 ACATTTTCAAAATGCAGGCGAGACA
*
7283097 TCATTTTCAAAATGCAGGCGAGACA
1 ACATTTTCAAAATGCAGGCGAGACA
7283122 ACATTTTCAAAATGCAGGCGAGACA
1 ACATTTTCAAAATGCAGGCGAGACA
7283147 ACAT
1 ACAT
7283151 CCATCCAAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (25 bp):
ACATTTTCAAAATGCAGGCGAGACA
Found at i:7288714 original size:3 final size:3
Alignment explanation
Indices: 7288706--7288740 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7288696 AAATGTAAAT
7288706 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
7288741 AAATCCCAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:7292916 original size:29 final size:28
Alignment explanation
Indices: 7292878--7292977 Score: 101
Period size: 29 Copynumber: 3.5 Consensus size: 28
7292868 ATAAAGAGAT
*
7292878 GCACCAAAGTGCAATGATAGAACAGAGTG
1 GCACCGAAGTGCAAT-ATAGAACAGAGTG
*
7292907 GCACCGAAGTGCAATATCAGAACAGAATG
1 GCACCGAAGTGCAATAT-AGAACAGAGTG
* * ** * *
7292936 ACACTGAAGTGCTTTAACAAAACAGAGTG
1 GCACCGAAGTGCAAT-ATAGAACAGAGTG
7292965 GCACCGAAGTGCA
1 GCACCGAAGTGCA
7292978 TTAACAGTAC
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
28 2 0.04
29 54 0.95
30 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.15
Consensus pattern (28 bp):
GCACCGAAGTGCAATATAGAACAGAGTG
Found at i:7292981 original size:29 final size:29
Alignment explanation
Indices: 7292898--7292983 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 29
7292888 GCAATGATAG
* * *
7292898 AACAGAGTGGCACCGAAGTGCAATATCAG
1 AACAGAGTGGCACCGAAGTGCATTAACAA
* * * *
7292927 AACAGAATGACACTGAAGTGCTTTAACAA
1 AACAGAGTGGCACCGAAGTGCATTAACAA
7292956 AACAGAGTGGCACCGAAGTGCATTAACA
1 AACAGAGTGGCACCGAAGTGCATTAACA
7292984 GTACAAAGAG
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.16
Consensus pattern (29 bp):
AACAGAGTGGCACCGAAGTGCATTAACAA
Found at i:7298094 original size:24 final size:24
Alignment explanation
Indices: 7298049--7298095 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7298039 TATATATACC
7298049 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
7298073 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
7298096 CCATAGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:7298761 original size:11 final size:10
Alignment explanation
Indices: 7298745--7298807 Score: 54
Period size: 11 Copynumber: 5.8 Consensus size: 10
7298735 CTTTTTCACC
7298745 TTTTCTTTCCT
1 TTTTCTTT-CT
7298756 TTTTCTCTTCT
1 TTTTCT-TTCT
*
7298767 GTTTCGTTTCT
1 TTTTC-TTTCT
**
7298778 ATGGTCTTTCT
1 -TTTTCTTTCT
7298789 TTTTCTATTCT
1 TTTTCT-TTCT
7298800 TTTTCTTT
1 TTTTCTTT
7298808 TATTTAATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
10 6 0.14
11 31 0.74
12 5 0.12
ACGTcount: A:0.03, C:0.21, G:0.06, T:0.70
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:7298827 original size:8 final size:8
Alignment explanation
Indices: 7298814--7298863 Score: 75
Period size: 8 Copynumber: 6.4 Consensus size: 8
7298804 CTTTTATTTA
7298814 ATTATAAT
1 ATTATAAT
*
7298822 AATATAAT
1 ATTATAAT
*
7298830 AATATAA-
1 ATTATAAT
7298837 ATTATAAT
1 ATTATAAT
7298845 ATTATAAT
1 ATTATAAT
7298853 ATTATAAT
1 ATTATAAT
7298861 ATT
1 ATT
7298864 TATTTTAACT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
7 6 0.15
8 33 0.85
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
ATTATAAT
Found at i:7298843 original size:23 final size:23
Alignment explanation
Indices: 7298813--7298859 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
7298803 TCTTTTATTT
7298813 AATTATAATAATATAATAATATA
1 AATTATAATAATATAATAATATA
* *
7298836 AATTATAATATTATAATATTATA
1 AATTATAATAATATAATAATATA
7298859 A
1 A
7298860 TATTTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
AATTATAATAATATAATAATATA
Found at i:7298867 original size:20 final size:19
Alignment explanation
Indices: 7298844--7298885 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7298834 TAAATTATAA
7298844 TATTATAA-TATTATAATATT
1 TATTATAACT-TTA-AATATT
*
7298864 TATTTTAACTTTAAATATT
1 TATTATAACTTTAAATATT
7298883 TAT
1 TAT
7298886 AATATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 9 0.45
20 10 0.50
21 1 0.05
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTATAACTTTAAATATT
Found at i:7314737 original size:26 final size:27
Alignment explanation
Indices: 7314682--7314739 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 27
7314672 ATCACGTAGG
7314682 AATAGGAAAGATATATAATATATTCCTA
1 AATAGGAAAGATATATAATATATT-CTA
*
7314710 AATAGGAATGATATATAATATATT-TA
1 AATAGGAAAGATATATAATATATTCTA
7314736 AATA
1 AATA
7314740 TTTCTAAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 6 0.21
28 23 0.79
ACGTcount: A:0.52, C:0.03, G:0.10, T:0.34
Consensus pattern (27 bp):
AATAGGAAAGATATATAATATATTCTA
Found at i:7315069 original size:12 final size:12
Alignment explanation
Indices: 7315052--7315077 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7315042 CAAAACAGGC
7315052 TTTTAGCGGCGT
1 TTTTAGCGGCGT
7315064 TTTTAGCGGCGT
1 TTTTAGCGGCGT
7315076 TT
1 TT
7315078 GGACAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:7315161 original size:40 final size:38
Alignment explanation
Indices: 7315084--7315177 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 38
7315074 GTTTGGACAA
* * *
7315084 AAAACGCCACTAAAAATCAAGCATTAGCTGCGCTTTTGGG
1 AAAACGCCGCTAAAAATCAAACATTAGCGGCGCTTTT--G
*
7315124 AAAACGCCGCTAAAAAT-AAACATTAGCGGCGTTTTTTG
1 AAAACGCCGCTAAAAATCAAACATTAGCGGCG-CTTTTG
7315162 AAAAGCGCCGC-AAAAA
1 AAAA-CGCCGCTAAAAA
7315178 GCCTAAGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
38 10 0.21
39 18 0.38
40 20 0.42
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.20
Consensus pattern (38 bp):
AAAACGCCGCTAAAAATCAAACATTAGCGGCGCTTTTG
Found at i:7315171 original size:39 final size:40
Alignment explanation
Indices: 7315084--7315177 Score: 113
Period size: 39 Copynumber: 2.4 Consensus size: 40
7315074 GTTTGGACAA
* * *
7315084 AAAACGCCACTAAAAATCAAGCATTAGCTGCGCTTTTGGG
1 AAAACGCCGCTAAAAATCAAACATTAGCGGCGCTTTTGGG
**
7315124 AAAACGCCGCTAAAAAT-AAACATTAGCGGCG-TTTTTTG
1 AAAACGCCGCTAAAAATCAAACATTAGCGGCGCTTTTGGG
7315162 AAAAGCGCCGC-AAAAA
1 AAAA-CGCCGCTAAAAA
7315178 GCCTAAGCCA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 14 0.29
39 18 0.38
40 16 0.33
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.20
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCAAACATTAGCGGCGCTTTTGGG
Found at i:7315285 original size:41 final size:41
Alignment explanation
Indices: 7315213--7315469 Score: 345
Period size: 41 Copynumber: 6.3 Consensus size: 41
7315203 TGAGTTTTTG
* *
7315213 GGGCCTTTAGCGGCGCTTTTTCAA-AAACGCCGCTAATGCTA
1 GGGCCTTTAGCGGCG-TTTTTGAAGAAGCGCCGCTAATGCTA
* * *
7315254 TGGCCTTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTA
* *
7315295 GGGCCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTA
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTA
** * *
7315336 TTGCCTTTAGCGGAGTTTTTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTA
*
7315377 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTA
* * * *
7315418 GGGCCTTTAGCGGTGTTTTTAAAGAAGCACCGCTAATACTA
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTA
*
7315459 GGGGCTTTAGC
1 GGGCCTTTAGC
7315470 ATTCAATTTA
Statistics
Matches: 192, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 8 0.04
41 184 0.96
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTA
Found at i:7315889 original size:23 final size:23
Alignment explanation
Indices: 7315817--7315875 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
7315807 GAGGGATTAT
*
7315817 GGTTTAAGGATT-GA-GATTTAA-
1 GGTTTAAGGGTTAGAGGA-TTAAG
*
7315838 GGTTTAAAGGTTAGAGGATTAAG
1 GGTTTAAGGGTTAGAGGATTAAG
7315861 GGTTTAAGGGTTAGA
1 GGTTTAAGGGTTAGA
7315876 AGGTTAGCGG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 10 0.31
22 6 0.19
23 16 0.50
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (23 bp):
GGTTTAAGGGTTAGAGGATTAAG
Found at i:7315904 original size:22 final size:23
Alignment explanation
Indices: 7315838--7315894 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
7315828 TGAGATTTAA
*
7315838 GGTTTAAAGGTTAG-AGGATTAAG-
1 GGTTTAAGGGTTAGAAGG-TT-AGC
7315861 GGTTTAAGGGTTAGAAGGTTAGC
1 GGTTTAAGGGTTAGAAGGTTAGC
7315884 GGTTT-AGGGTT
1 GGTTTAAGGGTT
7315895 TAGATGTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
22 8 0.26
23 20 0.65
24 3 0.10
ACGTcount: A:0.26, C:0.02, G:0.39, T:0.33
Consensus pattern (23 bp):
GGTTTAAGGGTTAGAAGGTTAGC
Found at i:7316147 original size:14 final size:15
Alignment explanation
Indices: 7316121--7316158 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
7316111 GTTTAGAGAG
7316121 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
7316136 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
7316150 TAT-GATTTA
1 TATGGATTTA
7316159 AGGGTTGGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 14 0.64
15 6 0.27
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:7316431 original size:15 final size:15
Alignment explanation
Indices: 7316411--7316440 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7316401 ATTTTAAGGA
7316411 TTAGGGAGTATGGAT
1 TTAGGGAGTATGGAT
*
7316426 TTAGGGATTATGGAT
1 TTAGGGAGTATGGAT
7316441 AGTTAGAGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (15 bp):
TTAGGGAGTATGGAT
Found at i:7316886 original size:15 final size:15
Alignment explanation
Indices: 7316866--7316899 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7316856 GTTTTTTTTT
*
7316866 AATTTATAAAAAACC
1 AATTTATAAAAAACA
7316881 AATTTATAAAAAACA
1 AATTTATAAAAAACA
7316896 AATT
1 AATT
7316900 AAAAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (15 bp):
AATTTATAAAAAACA
Found at i:7317257 original size:151 final size:150
Alignment explanation
Indices: 7316881--7317601 Score: 1058
Period size: 151 Copynumber: 4.8 Consensus size: 150
7316871 ATAAAAAACC
* **
7316881 AATTTATAAAAAACAAATTAAAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAAAATG
1 AATTTATAAAAAA-ACA--AAAAAAA--TTTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATG
* * *
7316946 AAATAA-TCTTTTGTGGCGTTTTTATGAAAAACGCCGCAATAGATAAGCAATAGTGGCATTTTTT
61 AAATAATTTTTTTGCGGCGTTTTTATGAAAAACGCCGCAATAGATAAGCAATAGTGGCGTTTTTT
* *
7317010 TTAAAAAAGCCGCAAAAAATCAATT
126 TTAAAAACGCCGCAAAAAATAAATT
7317035 AATTTAT------A-AAAAAAAA-TTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATGAAATA
1 AATTTATAAAAAAACAAAAAAAATTTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATGAAATA
*
7317092 ATTTTTTTGCGGCGTTTTTATGAAAAACGCCGCAATAGATAAGCAATAGCGGCGTTTTTTTTAAA
66 ATTTTTTTGCGGCGTTTTTATGAAAAACGCCGCAATAGATAAGCAATAGTGGCGTTTTTTTTAAA
*
7317157 AACGCTGCAAAAAAATAAATT
131 AACGCCGC-AAAAAATAAATT
7317178 AATTTATAAAAAAACAAAAAAAATTTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATGAAATA
1 AATTTATAAAAAAACAAAAAAAATTTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATGAAATA
*
7317243 ATTTTTTTGCGGCGTTTTTCAT-AAAAACGCCGCAATAGAGAAGCAATAGTGGCGTTTTTTTTAA
66 ATTTTTTTGCGGCGTTTTT-ATGAAAAACGCCGCAATAGATAAGCAATAGTGGCGTTTTTTTTAA
7317307 AAACGCCGCAAAAAAATAAATT
130 AAACGCCGC-AAAAAATAAATT
*
7317329 AATTTAT-AAAAAACAAAAAAAAATTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATGAAATA
1 AATTTATAAAAAAACAAAAAAAATTTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATGAAATA
*
7317393 ATTTTTTT-CTGGTGTTTTTATGAAAAACGCCGCAATAGATAAGCAATAGTGGCGTTTTTTTTAA
66 ATTTTTTTGC-GGCGTTTTTATGAAAAACGCCGCAATAGATAAGCAATAGTGGCGTTTTTTTT-A
7317457 AAAACGCCGC--AAAA-AAATT
129 AAAACGCCGCAAAAAATAAATT
*
7317476 AATTTATAAAAAAACATAATAAAAATTTTTTAGCATAGTGAAACGGCGTCATTTTGCTCAAAATG
1 AATTTATAAAAAAACA-AA-AAAAA---TTTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATG
* *
7317541 AAATAATTTTTTTGCGGCGTTTTTATGAAAAATGCCGCAATAGATAAGCAATAGCGGCGTT
61 AAATAATTTTTTTGCGGCGTTTTTATGAAAAACGCCGCAATAGATAAGCAATAGTGGCGTT
7317602 ATCCCAAAAT
Statistics
Matches: 526, Mismatches: 20, Indels: 43
0.89 0.03 0.07
Matches are distributed among these distances:
141 40 0.08
142 65 0.12
143 18 0.03
144 7 0.01
146 1 0.00
147 13 0.02
148 12 0.02
149 6 0.01
150 124 0.24
151 139 0.26
152 2 0.00
153 91 0.17
154 8 0.02
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.31
Consensus pattern (150 bp):
AATTTATAAAAAAACAAAAAAAATTTAGCATAGTGAAACGGCGTCATTTTGTTCAAAATGAAATA
ATTTTTTTGCGGCGTTTTTATGAAAAACGCCGCAATAGATAAGCAATAGTGGCGTTTTTTTTAAA
AACGCCGCAAAAAATAAATT
Found at i:7321914 original size:43 final size:42
Alignment explanation
Indices: 7321867--7322217 Score: 387
Period size: 43 Copynumber: 8.2 Consensus size: 42
7321857 TGTTTTTAGT
** * * *
7321867 GGCGTTTTTACAAGAAGCGTCGCTAAAGGTCTCGAGCTATAGC
1 GGCGTTTTTGGAA-AAGCGCCGCTAAAGGTCTTGATCTATAGC
* * * * *
7321910 GGCGTTTGTGGGAAAAGCGTCGCTAAAGGCCTCGAGCTATAGC
1 GGCGTTT-TTGGAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
* * *
7321953 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCTTGAGCTATAGC
1 GGCGTTT-TTGGAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
* *
7321996 GGCGTTTTTGGGGAAAGCGCCGCTAAAGGTCTTGATCTATAGA
1 GGCGTTTTT-GGAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
* * *
7322039 GGCGTTTGTGCAAAAAGCGCCGCTAAAGCTCTTGATCTATAGC
1 GGCGTTTTTG-GAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
* *
7322082 GGCGTTTTTGGGAGAAGCGCCGCTAAAGGTCTTGATCTCTAGC
1 GGCGTTTTT-GGAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
* * * *
7322125 GGCGTTTGTGCAAAAAGCGCCGTTAAAGCTCTTGATCTATAGC
1 GGCGTTTTTG-GAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
* * *
7322168 GGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGATCTATAGC
1 GGCGTTT-TTGGAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
7322211 GGCGTTT
1 GGCGTTT
7322218 ATTCCTAAAA
Statistics
Matches: 268, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
42 3 0.01
43 260 0.97
44 5 0.02
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (42 bp):
GGCGTTTTTGGAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
Done.