Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 200 of 210
Found at i:66658593 original size:26 final size:26
Alignment explanation
Indices: 66658557--66658620 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
66658547 TTTTCAATAG
66658557 TGCTCACACGAGCTGCGAAATGGGCT
1 TGCTCACACGAGCTGCGAAATGGGCT
66658583 TGCTCACACGAGCTGCGAAATGGGCT
1 TGCTCACACGAGCTGCGAAATGGGCT
66658609 TGCTCACACGAG
1 TGCTCACACGAG
66658621 TTGTGGGTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.19
Consensus pattern (26 bp):
TGCTCACACGAGCTGCGAAATGGGCT
Found at i:66660268 original size:21 final size:21
Alignment explanation
Indices: 66660243--66660295 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
66660233 CGACACATAA
*
66660243 GTGCCTGAAATGACACGCGAG
1 GTGCCTGAAATGACACACGAG
* *
66660264 GTGCCTGATACGACACACGAG
1 GTGCCTGAAATGACACACGAG
*
66660285 GTGCCTAAAAT
1 GTGCCTGAAAT
66660296 ATGACACATA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.28, T:0.17
Consensus pattern (21 bp):
GTGCCTGAAATGACACACGAG
Found at i:66660301 original size:23 final size:21
Alignment explanation
Indices: 66660243--66660303 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
66660233 CGACACATAA
*
66660243 GTGCCTGAA-ATGACACGCGAG
1 GTGCCT-AATATGACACACGAG
* *
66660264 GTGCCTGATACGACACACGAG
1 GTGCCTAATATGACACACGAG
66660285 GTGCCTAAAATATGACACA
1 GTGCCT--AATATGACACA
66660304 TAAAGTGCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 22 0.69
23 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.26, T:0.16
Consensus pattern (21 bp):
GTGCCTAATATGACACACGAG
Found at i:66665489 original size:24 final size:24
Alignment explanation
Indices: 66665462--66665511 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
66665452 TTAAAAAACT
66665462 AAAACAATTCAAAAAATTATAAAA
1 AAAACAATTCAAAAAATTATAAAA
* * * *
66665486 AAAATATTTCTAAAAATTCTAAAA
1 AAAACAATTCAAAAAATTATAAAA
66665510 AA
1 AA
66665512 TGTGTTAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (24 bp):
AAAACAATTCAAAAAATTATAAAA
Found at i:66666051 original size:18 final size:18
Alignment explanation
Indices: 66666014--66666052 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
66666004 AAAATTATTA
* **
66666014 AAAAATAATAAAATGTAT
1 AAAAATAAAAAAATACAT
66666032 AAAAATAAAAAAATACAT
1 AAAAATAAAAAAATACAT
66666050 AAA
1 AAA
66666053 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (18 bp):
AAAAATAAAAAAATACAT
Found at i:66666233 original size:27 final size:26
Alignment explanation
Indices: 66666202--66666265 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 26
66666192 TTTATCAAGG
*
66666202 TTATTAGTTTATCGATAAATAAATATT
1 TTATTAATTTATCGATAAATAAATA-T
* *
66666229 TTATTAATTAATCGATAAATTAATAT
1 TTATTAATTTATCGATAAATAAATAT
66666255 TTATTAATTTA
1 TTATTAATTTA
66666266 GAGAATATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 11 0.33
27 22 0.67
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (26 bp):
TTATTAATTTATCGATAAATAAATAT
Found at i:66671151 original size:24 final size:24
Alignment explanation
Indices: 66671123--66671169 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
66671113 ATTGAAATGA
66671123 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
66671147 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
66671170 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:66672581 original size:30 final size:31
Alignment explanation
Indices: 66672545--66672621 Score: 106
Period size: 30 Copynumber: 2.6 Consensus size: 31
66672535 TAAAATGGAG
* *
66672545 TTTTAGGTTCCTTAAAAGTTGG-AAAAAACA
1 TTTTAGGTCCCTTAAAAGTTGGTAAAAAAAA
66672575 TTTTAGGTCCCTTAAAAGTTGGTAAAAAAAA
1 TTTTAGGTCCCTTAAAAGTTGGTAAAAAAAA
*
66672606 -TTT-GGGCCCTTAAAAG
1 TTTTAGGTCCCTTAAAAG
66672622 CTAAATTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 12 0.28
30 24 0.56
31 7 0.16
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (31 bp):
TTTTAGGTCCCTTAAAAGTTGGTAAAAAAAA
Found at i:66676111 original size:17 final size:16
Alignment explanation
Indices: 66676078--66676128 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
66676068 TGAAATGGTG
*
66676078 TTAATTTA-TTTTATT
1 TTAATTTAGTTTTGTT
66676093 TTAATTTAGGTTTTGTT
1 TTAATTTA-GTTTTGTT
* *
66676110 TTTATTTAAGTTGTGTT
1 TTAATTT-AGTTTTGTT
66676127 TT
1 TT
66676129 GTTTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 8 0.27
17 21 0.70
18 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.69
Consensus pattern (16 bp):
TTAATTTAGTTTTGTT
Found at i:66679043 original size:9 final size:9
Alignment explanation
Indices: 66679029--66679080 Score: 52
Period size: 9 Copynumber: 5.3 Consensus size: 9
66679019 TTATTATCTT
66679029 AAAAATTAA
1 AAAAATTAA
66679038 AAAAATTAA
1 AAAAATTAA
66679047 AAAAATATATA
1 AAAAAT-TA-A
66679058 CAACAAATTAA
1 -AA-AAATTAA
66679069 TAAAAA-TAA
1 -AAAAATTAA
66679078 AAA
1 AAA
66679081 TATATAACAT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
8 3 0.08
9 18 0.47
10 5 0.13
11 4 0.11
12 4 0.11
13 4 0.11
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAAATTAA
Found at i:66679340 original size:21 final size:22
Alignment explanation
Indices: 66679291--66679341 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
66679281 ATTAGAAAAA
*
66679291 TGATTTAAGATGAAATATGAAC
1 TGATTTAAGATGAAATATCAAC
* * *
66679313 CGATTTAAGATG-AATTTCAAT
1 TGATTTAAGATGAAATATCAAC
66679334 TGATTTAA
1 TGATTTAA
66679342 ATGTGTTGAC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (22 bp):
TGATTTAAGATGAAATATCAAC
Found at i:66679561 original size:18 final size:19
Alignment explanation
Indices: 66679526--66679561 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
66679516 TTAAAAGTTA
66679526 TATAAATATAAAAAAATCT
1 TATAAATATAAAAAAATCT
*
66679545 TATAAATA-AACAAAATC
1 TATAAATATAAAAAAATC
66679562 AGAACATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (19 bp):
TATAAATATAAAAAAATCT
Found at i:66699464 original size:2 final size:2
Alignment explanation
Indices: 66699457--66699481 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
66699447 GTATAAAAAG
66699457 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
66699482 GAGTATGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:66701485 original size:127 final size:125
Alignment explanation
Indices: 66701321--66702399 Score: 531
Period size: 131 Copynumber: 8.3 Consensus size: 125
66701311 CGATGTTTTT
* * *
66701321 GTTTTTTCTGTCTGCTCCGCTACTACTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTG
1 GTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTG
* * * * *
66701386 CTTAGGGAGATAAGATCT-GTGGTTTTAATCCGCTCCACTGTAACT-TTAGGGAGATAAGATTG
66 CTTAGGGAGATAAGA-CTGGTGGCTTAAATCCGCTCCAC--T-ACTCTTAGGAAGATAAAATTC
*
66701448 GTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTA
1 GTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTG
* ** *
66701513 CTTAGGGAGATAGGACTGGTGGCTTAAATGTGCTTCACTACTGCTTAGGAAGATAAAATTC
66 CTTAGGGAGATAAGACTGGTGGCTTAAATCCGCTCCACTACT-CTTAGGAAGATAAAATTC
* ** *
66701574 GTCGTCTT-TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCAT-CTTTGACCTGCTCC
1 GT-TTCTTCTG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGC---GATCTGCTCC
* ***** ** * * *
66701637 ACTACTGCTTAGGGAGATGGAA-TCTACCATCTTCGACCCGCTCCACTACTGCTTAGGGAGATAG
59 ACTACTGCTTAGGGAGAT--AAGACTGGTGGCTTAAATCCGCTCCACTACT-CTTAGGAAGATAA
* * *
66701701 GACTG
121 AATTC
** * * * * * *
66701706 GTGGCTTAAT-TATGCTTCACTACTGCTTAGGAAGATAAGA-TTCGCCGTCTTCGATCTGCTCCA
1 GTTTCTT-CTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTT----G-ATGCGATCTGCTCCA
* ***** ** * **
66701769 CTACTGCTTAGGGAGATAAAATCTACCATCTTTGA-CCTGCTCCACTACTGCTTAGGGAGATAGG
60 CTACTGCTTAGGGAGATAAGA-CTGGTGGCTTAAATCC-GCTCCACTACT-CTTAGGAAGATAAA
66701833 A-TC
122 ATTC
** * * * * *
66701836 -TACCATCCTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTTG-TGGCTTAAATCTGCTTC
1 GTTTC-TTCT-G-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAT-GC---GATCTGCTCC
* * * * * *
66701899 ACTACTGCTTAGGAAGATAGGACTTGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAGGA
59 ACTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCCGCTCCACTACT-CTTAGGAAGATA-AA
*
66701964 CTT-
122 ATTC
** *** * * * * *
66701967 GTGGCTTAAATCTGCTTCACTACTACTTAGGAAGATAAGA-TTCACCGTCTTCGATCTGCTCCAC
1 GTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTT----G-ATGCGATCTGCTCCAC
* * * * *
66702031 TACTGCTTAGGGAGATAGGACTTGG-GGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGAT
61 TACTGCTTAGGGAGATAAGAC-TGGTGGCTTAAATCCGCTCCACTACT-CTTAGGAAGATAAAAT
66702095 TC
124 TC
** * * ** * *
66702097 GCCGTCTTC-GATCTGCTCCCCTACTGCTTAGGGAGATAGGATCTACCATCCTCGACCTGCTCCA
1 G-TTTCTTCTG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGAT--GCGATCTGCTCCA
* * * * *
66702161 CTACTGCTTAGGGAGATAGGACTTGG-GGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGA
60 CTACTGCTTAGGGAGATAAGAC-TGGTGGCTTAAATCCGCTCCACTACT-CTTAGGAAGATAAAA
66702225 TTC
123 TTC
** * * ** * *
66702228 GCCGTCTTC-GATCTGCTCCCCTACTGCTTAGGGAGATAGGATCTACCATCCTCGACCTGCTCCA
1 G-TTTCTTCTG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGAT--GCGATCTGCTCCA
* * * * *
66702292 CTACTGCTTAGGGAGATAGGACTTGG-GGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGA
60 CTACTGCTTAGGGAGATAAGAC-TGGTGGCTTAAATCCGCTCCACTACT-CTTAGGAAGATAAAA
66702356 TTC
123 TTC
** *
66702359 GCCGTCTTC-GATCTGCTCCCCTACTGCTTAGGGAGATAAGA
1 G-TTTCTTCTG-TCTGCTCCACTACTGCTTAGGGAGATAAGA
66702400 TCTACCATCT
Statistics
Matches: 793, Mismatches: 108, Indels: 98
0.79 0.11 0.10
Matches are distributed among these distances:
124 3 0.00
125 1 0.00
126 20 0.03
127 125 0.16
128 6 0.01
129 37 0.05
130 97 0.12
131 434 0.55
132 61 0.08
133 7 0.01
134 2 0.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (125 bp):
GTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTG
CTTAGGGAGATAAGACTGGTGGCTTAAATCCGCTCCACTACTCTTAGGAAGATAAAATTC
Found at i:66701602 original size:44 final size:44
Alignment explanation
Indices: 66701331--66702432 Score: 652
Period size: 44 Copynumber: 25.4 Consensus size: 44
66701321 GTTTTTTCTG
* * * * *
66701331 TCTGCTCCGCTACTACTTAGGGAGATAAGA--C-TTG-ATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* **
66701371 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TCTGTGGT-TTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GTCGTCTTCGA
* * *
66701414 TCCGCTCCACTGTAACT--TTAGGGAGATAAGATTGGT-TTCTTCTG-
1 TCTGCTCCAC--T-ACTGCTTAGGGAGATAAGATTCGTCGTCTTC-GA
* * *
66701458 TCTGCTCCACTACTGCTTAGGGAGATAAGA--C-TTG-ATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* * * * * **
66701498 TCTGCTCCACTACTACTTAGGGAGATAGGACTGGT-GGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* * * * *
66701541 TGTGCTTCACTACTGCTTAGGAAGATAAAATTCGTCGTCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* *
66701585 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TC-TACCATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGT--CGTCTTCGA
* * * *
66701629 CCTGCTCCACTACTGCTTAGGGAGAT-GGAATC-TACCATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGT--CGTCTTCGA
* * * * * * *
66701673 CCCGCTCCACTACTGCTTAGGGAGATAGGACTGGT-GGCTT-AA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* * * *
66701715 TTATGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGA
1 -TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* * *
66701760 TCTGCTCCACTACTGCTTAGGGAGATAA-AATC-TACCATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGT--CGTCTTCGA
* * * *
66701804 CCTGCTCCACTACTGCTTAGGGAGATAGGA-TC-TACCATCCTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGT--CGTCTTCGA
* * * **
66701848 CCTGCTCCACTACTGCTTAGGGAGATAGGACTT-GT-GGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TTCGTCGTCTTCGA
* * * * **
66701891 TCTGCTTCACTACTGCTTAGGAAGATAGGACTT-GT-GGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TTCGTCGTCTTCGA
* * * * **
66701934 TCTGCTTCACTACTGCTTAGGAAGATAGGACTT-GT-GGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TTCGTCGTCTTCGA
* * * **
66701977 TCTGCTTCACTACTACTTAGGAAGATAAGATTCACCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* * * **
66702021 TCTGCTCCACTACTGCTTAGGGAGATAGGACTT-G-GGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TTCGTCGTCTTCGA
* * * *
66702064 TCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* * * *
66702108 TCTGCTCCCCTACTGCTTAGGGAGATAGGA-TC-TACCATCCTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGT--CGTCTTCGA
* * * * **
66702152 CCTGCTCCACTACTGCTTAGGGAGATAGGACTT-G-GGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TTCGTCGTCTTCGA
* * * *
66702195 TCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* * * *
66702239 TCTGCTCCCCTACTGCTTAGGGAGATAGGA-TC-TACCATCCTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGT--CGTCTTCGA
* * * * **
66702283 CCTGCTCCACTACTGCTTAGGGAGATAGGACTT-G-GGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TTCGTCGTCTTCGA
* * * *
66702326 TCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
* * *
66702370 TCTGCTCCCCTACTGCTTAGGGAGATAAGA-TC-TACCATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGT--CGTCTTCGA
*
66702414 CCTGCTCCACTACTGCTTA
1 TCTGCTCCACTACTGCTTA
66702433 AGATGTACCA
Statistics
Matches: 847, Mismatches: 161, Indels: 104
0.76 0.14 0.09
Matches are distributed among these distances:
39 1 0.00
40 59 0.07
41 4 0.00
42 12 0.01
43 304 0.36
44 449 0.53
45 10 0.01
46 8 0.01
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATTCGTCGTCTTCGA
Found at i:66701607 original size:87 final size:87
Alignment explanation
Indices: 66701458--66702396 Score: 796
Period size: 87 Copynumber: 10.8 Consensus size: 87
66701448 GTTTCTTCTG
* * * * * *
66701458 TCTGCTCCACTACTGCTTAGGGAGATAAGA--C-TTG-ATGCGATCTGCTCCACTACTACTTAGG
1 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGG
*
66701519 GAGATAGGACTGGTGGCTTAAA
66 GAGATAGGACTGGCGGCTTAAA
* * *
66701541 TGTGCTTCACTACTGCTTAGGAAGATAAAATTCGTCGTCTTTGATCTGCTCCACTACTGCTTAGG
1 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGG
* ** ** **
66701606 GAGATAAGATCTACCATCTTTGA
66 GAGATAGGA-CTGGCGGCTTAAA
* * * * * * * *
66701629 CCTGCTCCACTACTGCTTAGGGAGAT-GGAATC-TACCATCTTCGACCCGCTCCACTACTGCTTA
1 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGT--CGTCTTCGATCTGCTCCACTACTGCTTA
* *
66701692 GGGAGATAGGACTGGTGGCTTAAT
64 GGGAGATAGGACTGGCGGCTTAAA
* *
66701716 TATGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGG
** ** ** **
66701781 GAGATAAAATCTACCATCTTTGA
66 GAGATAGGA-CTGGCGGCTTAAA
* * * * * * *
66701804 CCTGCTCCACTACTGCTTAGGGAGATAGGA-TC-TACCATCCTCGACCTGCTCCACTACTGCTTA
1 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGT--CGTCTTCGATCTGCTCCACTACTGCTTA
* *
66701867 GGGAGATAGGACTTGTGGCTTAAA
64 GGGAGATAGGACTGGCGGCTTAAA
* * ** *
66701891 TCTGCTTCACTACTGCTTAGGAAGATAGGACTT-GT-GGCTTAAATCTGCTTCACTACTGCTTAG
1 TCTGCTTCACTACTGCTTAGGAAGATAAGA-TTCGTCGTCTTCGATCTGCTCCACTACTGCTTAG
* * *
66701954 GAAGATAGGACTTGTGGCTTAAA
65 GGAGATAGGACTGGCGGCTTAAA
* **
66701977 TCTGCTTCACTACTACTTAGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGG
66702042 GAGATAGGACTTGG-GGCTTAAA
66 GAGATAGGAC-TGGCGGCTTAAA
* * *
66702064 TCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCCCTACTGCTTAGG
1 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGG
** ** * **
66702129 GAGATAGGATCTACCATCCTCGA
66 GAGATAGGA-CTGGCGGCTTAAA
* * * * * * ** *
66702152 CCTGCTCCACTACTGCTTAGGGAGATAGGACTT-G-GGGCTTAAATCTGCTTCACTACTGCTTAG
1 TCTGCTTCACTACTGCTTAGGAAGATAAGA-TTCGTCGTCTTCGATCTGCTCCACTACTGCTTAG
* * * * **
66702215 GAAGAT-GAGATTCGCCGTCTTCGA
65 GGAGATAG-GACT-GGCGGCTTAAA
* * * * * * *
66702239 TCTGCTCCCCTACTGCTTAGGGAGATAGGA-TC-TACCATCCTCGACCTGCTCCACTACTGCTTA
1 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGT--CGTCTTCGATCTGCTCCACTACTGCTTA
66702302 GGGAGATAGGACTTGG-GGCTTAAA
64 GGGAGATAGGAC-TGGCGGCTTAAA
* * *
66702326 TCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCCCTACTGCTTAGG
1 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGG
66702391 GAGATA
66 GAGATA
66702397 AGATCTACCA
Statistics
Matches: 676, Mismatches: 149, Indels: 58
0.77 0.17 0.07
Matches are distributed among these distances:
83 26 0.04
85 4 0.01
86 76 0.11
87 371 0.55
88 193 0.29
89 6 0.01
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (87 bp):
TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAGGACTGGCGGCTTAAA
Found at i:66701709 original size:175 final size:176
Alignment explanation
Indices: 66701459--66702181 Score: 930
Period size: 175 Copynumber: 4.2 Consensus size: 176
66701449 TTTCTTCTGT
* ** * * *
66701459 CTGCTCCACTACTGCTTAGGGAGATAAG-A-CT-TGA--TGCGATCTGCTCCACTACTACTTAGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGAATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
* * *
66701519 GAGATAGGACTGGTGGCTTAAATGTGCTTCACTACTGCTTAGGAAGATAAAATTCGTCGTCTTTG
66 GAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAAATTCGCCGTCTTCG
66701584 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGAC
131 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGAC
*
66701630 CTGCTCCACTACTGCTTAGGGAGAT-GGAATCTACCATCTTCGACCCGCTCCACTACTGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGAATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
* * *
66701694 GAGATAGGACTGGTGGCTTAATTATGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCG
66 GAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAAATTCGCCGTCTTCG
*
66701759 ATCTGCTCCACTACTGCTTAGGGAGATAAAATCTACCATCTTTGAC
131 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGAC
*
66701805 CTGCTCCACTACTGCTTAGGGAGATAGG-ATCTACCATCCTCGACCTGCTCCACTACTGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGAATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
* * * * * *
66701869 GAGATAGGACTTGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAGGACTT-G-TGGCTTA
66 GAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATA-AAATTCGCCGTCTTC
* * * * ***** ** *
66701932 AATCTGCTTCACTACTGCTTAGGAAGATAGGA-CTTGTGGCTTAAAT
130 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGAC
* * * * * * *
66701978 CTGCTTCACTACTACTTAGGAAGATAAGATTC-ACCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGAATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
* *
66702042 GAGATAGGACTTGG-GGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTC
66 GAGATAGGAC-TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAAATTCGCCGTCTTC
* * * *
66702106 GATCTGCTCCCCTACTGCTTAGGGAGATAGGATCTACCATCCTCGAC
130 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGAC
66702153 CTGCTCCACTACTGCTTAGGGAGATAGGA
1 CTGCTCCACTACTGCTTAGGGAGATAGGA
66702182 CTTGGGGCTT
Statistics
Matches: 470, Mismatches: 70, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
170 1 0.00
171 26 0.06
172 4 0.01
173 105 0.22
174 67 0.14
175 263 0.56
176 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (176 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGAATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
GAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAAATTCGCCGTCTTCG
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGAC
Found at i:66701728 original size:131 final size:131
Alignment explanation
Indices: 66701458--66702432 Score: 1001
Period size: 131 Copynumber: 7.5 Consensus size: 131
66701448 GTTTCTTCTG
** * * *
66701458 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGA--TGCGATCTGCTCCACTACTACTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
* * * * * *
66701519 GAGATAGGAC-TGGTGGCTTAAATGTGCTTCACTACTGCTTAGGAAGATAAAATTCGTCGTCTTT
66 GAGATAGGACTTGG-GGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGACTCGCCGTCTTC
66701583 GA
130 GA
*
66701585 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
***** ** * * * * ** *
66701650 GAGAT-GGAATCTACCATCTTCGACCCGCTCCACTACTGCTTAGGGAGAT-AGGACT-GGTGGCT
66 GAGATAGG-A-CTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGA-GACTCGCCGTCT
*
66701712 T-AA
128 TCGA
* * * * * *
66701715 TTATGCTTCACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 -TCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACCATCTTCGACCTGCTCCACTACTGCTTA
** ***** ** * * * * *
66701779 GGGAGATAAAATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGAT-AGGA-TCTACCAT
64 GGGAGATAGGA-CTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGA-GACTC-GCCGT
*
66701842 CCTCGA
126 CTTCGA
* * ***** ** * *
66701848 CCTGCTCCACTACTGCTTAGGGAGATAGGA-CTTGTGGCTTAAATCTGCTTCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
* * * * * *
66701912 AAGATAGGACTTGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGAT-AGGACTTG-TGGCTTA
66 GAGATAGGACTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGA-GACTCGCCGTCTTC
*
66701975 AA
130 GA
* * * * *
66701977 TCTGCTTCACTACTACTTAGGAAGATAAGAT-TCACCGTCTTCGATCTGCTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACCATCTTCGACCTGCTCCACTACTGCTTAG
*
66702041 GGAGATAGGACTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTC
65 GGAGATAGGACTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGACTCGCCGTCTTC
66702106 GA
130 GA
* * *
66702108 TCTGCTCCCCTACTGCTTAGGGAGATAGGATCTACCATCCTCGACCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
*
66702173 GAGATAGGACTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
66 GAGATAGGACTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGACTCGCCGTCTTCG
66702238 A
131 A
* * *
66702239 TCTGCTCCCCTACTGCTTAGGGAGATAGGATCTACCATCCTCGACCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
*
66702304 GAGATAGGACTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
66 GAGATAGGACTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGACTCGCCGTCTTCG
66702369 A
131 A
* *
66702370 TCTGCTCCCCTACTGCTTAGGGAGATAAGATCTACCATCTTTGACCTGCTCCACTACTGCTTA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTA
66702433 AGATGTACCA
Statistics
Matches: 721, Mismatches: 106, Indels: 38
0.83 0.12 0.04
Matches are distributed among these distances:
127 30 0.04
128 2 0.00
129 30 0.04
130 113 0.16
131 488 0.68
132 57 0.08
133 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (131 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGG
GAGATAGGACTTGGGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGACTCGCCGTCTTCG
A
Found at i:66704381 original size:28 final size:29
Alignment explanation
Indices: 66704345--66704417 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
66704335 CGTACGTAAC
* * * *
66704345 GTATCTATGTCTATATAGATTA-TAAAAT
1 GTATGTATGTATATATAAATTACAAAAAT
66704373 GTATGTATGTATATATAAATTACAAAAAT
1 GTATGTATGTATATATAAATTACAAAAAT
66704402 GTATGTATGTATATAT
1 GTATGTATGTATATAT
66704418 GTAATTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 19 0.47
29 21 0.52
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.42
Consensus pattern (29 bp):
GTATGTATGTATATATAAATTACAAAAAT
Found at i:66704410 original size:29 final size:28
Alignment explanation
Indices: 66704345--66704426 Score: 101
Period size: 29 Copynumber: 2.9 Consensus size: 28
66704335 CGTACGTAAC
* * * *
66704345 GTATCTATGTCTATATAGATTATAAAAT
1 GTATGTATGTATATATAAATTAAAAAAT
66704373 GTATGTATGTATATATAAATTACAAAAAT
1 GTATGTATGTATATATAAATTA-AAAAAT
*
66704402 GTATGTATGTATATATGTAATTAAA
1 GTATGTATGTATATAT-AAATTAAA
66704427 TTTAAAATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
28 19 0.40
29 23 0.49
30 5 0.11
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (28 bp):
GTATGTATGTATATATAAATTAAAAAAT
Found at i:66707997 original size:49 final size:49
Alignment explanation
Indices: 66707925--66708020 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
66707915 TATGCAAAGT
* *
66707925 TAAACTTGGTCTTCCACTGTCTACACTTTTATCACTATTTATACCTTGC
1 TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACCTTGC
* *
66707974 TAAACTTAGTCTTTCACTGTCTACACTCTTATCACTATTTATCCCTT
1 TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACCTT
66708021 CTTGAATGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.23, C:0.27, G:0.06, T:0.44
Consensus pattern (49 bp):
TAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACCTTGC
Found at i:66709357 original size:43 final size:43
Alignment explanation
Indices: 66709309--66709391 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
66709299 TCATATTTCA
* * *
66709309 TTTCTCATCTCATAATCATTTTTCATATTTGTCATTTCAATAT
1 TTTCTCATCTCATAATCAATTATCATATTTGCCATTTCAATAT
* *
66709352 TTTCTCATCTCATATTCAATTATCATCTTTGCCATTTCAA
1 TTTCTCATCTCATAATCAATTATCATATTTGCCATTTCAA
66709392 AATCAATCAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.25, C:0.22, G:0.02, T:0.51
Consensus pattern (43 bp):
TTTCTCATCTCATAATCAATTATCATATTTGCCATTTCAATAT
Found at i:66718618 original size:3 final size:3
Alignment explanation
Indices: 66718610--66718643 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
66718600 TTGATGACAG
66718610 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
66718644 TGATAGTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:66725409 original size:16 final size:15
Alignment explanation
Indices: 66725379--66725407 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
66725369 GTATCTTTCC
66725379 TTTTTTAAATATTTA
1 TTTTTTAAATATTTA
66725394 TTTTTTAAATATTT
1 TTTTTTAAATATTT
66725408 TACTACACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAAATATTTA
Found at i:66735391 original size:14 final size:15
Alignment explanation
Indices: 66735374--66735407 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
66735364 AATAAATATC
66735374 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
66735388 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
66735403 TAAAA
1 TAAAA
66735408 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:66735635 original size:22 final size:22
Alignment explanation
Indices: 66735605--66735646 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
66735595 ATTTGGAGAT
*
66735605 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
66735627 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
66735647 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:66735654 original size:30 final size:30
Alignment explanation
Indices: 66735618--66735676 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
66735608 TTGAAGGAAA
*
66735618 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAATTTGAGAGT
66735648 TTGAGAGAATTTTGGAAGGAATTTGAGAG
1 TTGAGAGAATTTTGGAAGGAATTTGAGAG
66735677 AATTTTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAATTTGAGAGT
Found at i:66735667 original size:52 final size:51
Alignment explanation
Indices: 66735596--66735697 Score: 134
Period size: 52 Copynumber: 2.0 Consensus size: 51
66735586 TTAATATGGA
* * *
66735596 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAA-TTGAGAG
* *
66735647 TTTGAGAGAATTTTGGAAGGAATTTGAGAGAATTTTTGAACGGAATTGAGA
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGA
66735698 TAATTTTTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
51 4 0.09
52 36 0.82
53 4 0.09
ACGTcount: A:0.33, C:0.01, G:0.31, T:0.34
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGAG
Found at i:66735672 original size:22 final size:22
Alignment explanation
Indices: 66735647--66735717 Score: 99
Period size: 22 Copynumber: 3.2 Consensus size: 22
66735637 AATTTGAGAG
*
66735647 TTTGAGAGAATTTTGGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
66735669 TTTGAGAGAATTTTTGAACGGAA
1 TTTGAGAGAATTTTTGAA-GGAA
*
66735692 -TTGAGATAATTTTTGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
*
66735713 ATTGA
1 TTTGA
66735718 TATTGAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.09
22 37 0.82
23 4 0.09
ACGTcount: A:0.37, C:0.01, G:0.27, T:0.35
Consensus pattern (22 bp):
TTTGAGAGAATTTTTGAAGGAA
Found at i:66746955 original size:13 final size:13
Alignment explanation
Indices: 66746916--66746966 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
66746906 AGTTTTTCAT
66746916 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
* *
66746929 TACTTTTCAGAAG
1 TGCTTTTGAGAAG
*
66746942 TGCTTTTGAAAAG
1 TGCTTTTGAGAAG
66746955 TGCTTTTGAGAA
1 TGCTTTTGAGAA
66746967 ATTTGAGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:66748014 original size:7 final size:7
Alignment explanation
Indices: 66747982--66748013 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
66747972 AGAGGGAACC
66747982 AGCAAAG
1 AGCAAAG
66747989 AGCAAAG
1 AGCAAAG
66747996 AGCAAAG
1 AGCAAAG
*
66748003 AGCAGAG
1 AGCAAAG
66748010 AGCA
1 AGCA
66748014 GTGTAGTAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.53, C:0.16, G:0.31, T:0.00
Consensus pattern (7 bp):
AGCAAAG
Found at i:66748054 original size:21 final size:21
Alignment explanation
Indices: 66748012--66748056 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
66748002 GAGCAGAGAG
* * * *
66748012 CAGTGTAGTAGCAGAGGGAAC
1 CAGTGTAGCAGCAAAAGAAAC
66748033 CAGTGTAGCAGCAAAAGAAAC
1 CAGTGTAGCAGCAAAAGAAAC
66748054 CAG
1 CAG
66748057 CAAAGAGCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.18, G:0.31, T:0.11
Consensus pattern (21 bp):
CAGTGTAGCAGCAAAAGAAAC
Found at i:66748064 original size:52 final size:52
Alignment explanation
Indices: 66747960--66748065 Score: 126
Period size: 52 Copynumber: 2.0 Consensus size: 52
66747950 GGGCAGAGAA
* *
66747960 CAGTGTAGCAGCAGAGGGAACCAGCAAAGAGCAAAGAGCAAAGAGCAGAGAG
1 CAGTGTAGCAGCAGAGGGAACCAGCAAAGAGCAAAGAGCAAACAGCAAAGAG
* ***
66748012 CAGTGTAGTAGCAGAGGGAACCAGTGTAGCAGCAAA-AG-AAACCAGCAAAGAG
1 CAGTGTAGCAGCAGAGGGAACCAGCAAAG-AGCAAAGAGCAAA-CAGCAAAGAG
66748064 CA
1 CA
66748066 AAGAGCAGAG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 3 0.07
52 37 0.80
53 6 0.13
ACGTcount: A:0.43, C:0.18, G:0.32, T:0.07
Consensus pattern (52 bp):
CAGTGTAGCAGCAGAGGGAACCAGCAAAGAGCAAAGAGCAAACAGCAAAGAG
Found at i:66750576 original size:2 final size:2
Alignment explanation
Indices: 66750569--66750614 Score: 65
Period size: 2 Copynumber: 22.5 Consensus size: 2
66750559 TAACATTACC
* *
66750569 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AC AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
66750612 AT A
1 AT A
66750615 CTAAATTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 39 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:66750795 original size:2 final size:2
Alignment explanation
Indices: 66750788--66750829 Score: 57
Period size: 2 Copynumber: 20.5 Consensus size: 2
66750778 TAACATTACC
* *
66750788 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AC AC AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT A
66750830 CTAAATTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:66750903 original size:215 final size:216
Alignment explanation
Indices: 66750528--66750961 Score: 825
Period size: 215 Copynumber: 2.0 Consensus size: 216
66750518 CACTTGATGT
*
66750528 CCAAAAATTATATATATGCCTTTTAACAATATAACATTACCATATATATATATATATATATATAT
1 CCAAAAAATATATATATGCCTTTTAACAATATAACATTACC--A-ATATATATATATATATATAT
66750593 ATATATATCATACACATATATACTAAATTTTACATTCAACCAATACTATGCACCTATTTGTATTT
63 ATATATATCATACACATATATACTAAATTTTACATTCAACCAATACTATGCACCTATTTGTATTT
66750658 ATAAAAATTCTCATATTTTCCAATATAGTCCTTTTCTCACTTTTTTGTACCAATTGTATCATTTT
128 ATAAAAATTCTCATATTTTCCAATATAGTCCTTTTCTCACTTTTTTGTACCAATTGTATCATTTT
66750723 CTAATACATTTAAACATTATGAAA
193 CTAATACATTTAAACATTATGAAA
66750747 CCAAAAAATATATATATGCCTTTTAACAATATAACATTACC-ATATATATATATATATATATATA
1 CCAAAAAATATATATATGCCTTTTAACAATATAACATTACCAATATATATATATATATATATATA
66750811 TATATCATACACATATATACTAAATTTTACATTCAACCAATACTATGCACCTATTTGTATTTATA
66 TATATCATACACATATATACTAAATTTTACATTCAACCAATACTATGCACCTATTTGTATTTATA
66750876 AAAATTCTCATATTTTCCAATATAGTCCTTTTCTCACTTTTTTGTACCAATTGTATCATTTTCTA
131 AAAATTCTCATATTTTCCAATATAGTCCTTTTCTCACTTTTTTGTACCAATTGTATCATTTTCTA
66750941 ATACATTTAAACATTATGAAA
196 ATACATTTAAACATTATGAAA
66750962 TATACGCTAC
Statistics
Matches: 214, Mismatches: 1, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
215 174 0.81
219 40 0.19
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (216 bp):
CCAAAAAATATATATATGCCTTTTAACAATATAACATTACCAATATATATATATATATATATATA
TATATCATACACATATATACTAAATTTTACATTCAACCAATACTATGCACCTATTTGTATTTATA
AAAATTCTCATATTTTCCAATATAGTCCTTTTCTCACTTTTTTGTACCAATTGTATCATTTTCTA
ATACATTTAAACATTATGAAA
Found at i:66755790 original size:25 final size:26
Alignment explanation
Indices: 66755745--66755802 Score: 84
Period size: 24 Copynumber: 2.3 Consensus size: 26
66755735 TATTTAAGTT
*
66755745 TATATATTGCAATAAAAAT-AATT-A
1 TATATATTGAAATAAAAATAAATTGA
66755769 TATATATTGAATATAAAAATAAATTGA
1 TATATATTGAA-ATAAAAATAAATTGA
66755796 TATATAT
1 TATATAT
66755803 ATATTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 10 0.33
25 8 0.27
26 4 0.13
27 8 0.27
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (26 bp):
TATATATTGAAATAAAAATAAATTGA
Found at i:66763031 original size:62 final size:62
Alignment explanation
Indices: 66762975--66763094 Score: 161
Period size: 61 Copynumber: 2.0 Consensus size: 62
66762965 AAAAAAATTC
* * * * * *
66762975 AACAAATTTAACTCTCAATGTTTACAAAATCTATTATTTTAGTTCT-AATTCTAAAAATAAT
1 AACAAATTTAACCCTCAATATTTACAAAATCTATCAATTTAGTACTAAACTCTAAAAATAAT
* *
66763036 AATAAATTTCACCCTCAATATTTACAAAATCTATCAATTTAGTACTAAACTCTAAAAAT
1 AACAAATTTAACCCTCAATATTTACAAAATCTATCAATTTAGTACTAAACTCTAAAAAT
66763095 TTTAAAAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
61 39 0.78
62 11 0.22
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.38
Consensus pattern (62 bp):
AACAAATTTAACCCTCAATATTTACAAAATCTATCAATTTAGTACTAAACTCTAAAAATAAT
Found at i:66764222 original size:30 final size:30
Alignment explanation
Indices: 66764153--66764236 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 30
66764143 TTTTTAAAAA
* *
66764153 TTTTATAGTTAGGACAAAATTGACAAATTT
1 TTTTATATTTAGGACCAAATTGACAAATTT
* * **
66764183 TTTAAATATTTAGGACCAAATTTATTAATTT
1 TTT-TATATTTAGGACCAAATTGACAAATTT
* *
66764214 TTTTATATTTAAGATCAAATTGA
1 TTTTATATTTAGGACCAAATTGA
66764237 TAGAATGTGC
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
30 19 0.44
31 24 0.56
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (30 bp):
TTTTATATTTAGGACCAAATTGACAAATTT
Found at i:66765270 original size:21 final size:20
Alignment explanation
Indices: 66765230--66765273 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
66765220 TCAGGTCTAT
66765230 AAACATTTACAAGTCATTTA
1 AAACATTTACAAGTCATTTA
* *
66765250 AAACACTTTAGAA-TCATTTT
1 AAACA-TTTACAAGTCATTTA
66765270 AAAC
1 AAAC
66765274 TGAGTTCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (20 bp):
AAACATTTACAAGTCATTTA
Found at i:66768861 original size:20 final size:20
Alignment explanation
Indices: 66768838--66768879 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
66768828 TTAAGAAAAA
66768838 TAAGGTTTAATTAA-CTAAAT
1 TAAGG-TTAATTAAGCTAAAT
66768858 TAAGGTTAATTAAGCTAAAT
1 TAAGGTTAATTAAGCTAAAT
66768878 TA
1 TA
66768880 CAATTTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (20 bp):
TAAGGTTAATTAAGCTAAAT
Found at i:66769957 original size:20 final size:19
Alignment explanation
Indices: 66769924--66769993 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
66769914 TACGAGATTA
*
66769924 TGTGCCAGTATGCACTTCG
1 TGTGCCAGTATGCACTTTG
* *
66769943 TGTGCTAGATATGCA-TTTA
1 TGTGCCAG-TATGCACTTTG
66769962 TGTGCCAGTATGCACTTTG
1 TGTGCCAGTATGCACTTTG
*
66769981 TGTACCAGGTATG
1 TGTGCCA-GTATG
66769994 TGTTTTGTAC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
18 6 0.14
19 25 0.60
20 11 0.26
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.36
Consensus pattern (19 bp):
TGTGCCAGTATGCACTTTG
Found at i:66772078 original size:21 final size:21
Alignment explanation
Indices: 66772039--66772079 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
66772029 CTAATTAATT
66772039 TAAAATTTTATGATGTAAAAA
1 TAAAATTTTATGATGTAAAAA
*
66772060 TAAATATTTTAT-ATTTAAAA
1 TAAA-ATTTTATGATGTAAAA
66772080 TAGTGGAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (21 bp):
TAAAATTTTATGATGTAAAAA
Found at i:66782708 original size:183 final size:184
Alignment explanation
Indices: 66782400--66782766 Score: 727
Period size: 183 Copynumber: 2.0 Consensus size: 184
66782390 CAGGATTTTG
66782400 TTTTAAGAGTTCCTAACGATTTAACTAGCCAGTTCTAGTTGGGCTCAATTAAAATTTAGGGCTGG
1 TTTTAAGAGTTCCTAACGATTTAACTAGCCAGTTCTAGTTGGGCTCAATTAAAATTTAGGGCTGG
66782465 CCCGGCCTGAAAAATTAGTTTAAAATTTTGTCTATATCTTATTCGGATAAAAATATTAAAATTCG
66 CCCGGCCTGAAAAATTAGTTTAAAATTTTGTCTATATCTTATTCGGATAAAAATATTAAAATTCG
66782530 GGTTCAACTCGGCTCGTCAATATTATTTTTTATATTATTTTTA-ATAATTTTAA
131 GGTTCAACTCGGCTCGTCAATATTATTTTTTATATTATTTTTATATAATTTTAA
66782583 TTTTAAGAGTTCCTAACGATTTAACTAGCCAGTTCTAGTTGGGCTCAATTAAAATTTAGGGCTGG
1 TTTTAAGAGTTCCTAACGATTTAACTAGCCAGTTCTAGTTGGGCTCAATTAAAATTTAGGGCTGG
66782648 CCCGGCCTGAAAAATTAGTTTAAAATTTTGTCTATATCTTATTCGGATAAAAATATTAAAATTCG
66 CCCGGCCTGAAAAATTAGTTTAAAATTTTGTCTATATCTTATTCGGATAAAAATATTAAAATTCG
66782713 GGTTCAACTCGGCTCGTCAATATTATTTTTTATATTATTTTTATATAATTTTAA
131 GGTTCAACTCGGCTCGTCAATATTATTTTTTATATTATTTTTATATAATTTTAA
66782767 AATATATATA
Statistics
Matches: 183, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
183 173 0.95
184 10 0.05
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.41
Consensus pattern (184 bp):
TTTTAAGAGTTCCTAACGATTTAACTAGCCAGTTCTAGTTGGGCTCAATTAAAATTTAGGGCTGG
CCCGGCCTGAAAAATTAGTTTAAAATTTTGTCTATATCTTATTCGGATAAAAATATTAAAATTCG
GGTTCAACTCGGCTCGTCAATATTATTTTTTATATTATTTTTATATAATTTTAA
Found at i:66782749 original size:12 final size:12
Alignment explanation
Indices: 66782732--66782764 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
66782722 CGGCTCGTCA
66782732 ATATTATTTTTT
1 ATATTATTTTTT
66782744 ATATTA-TTTTT
1 ATATTATTTTTT
*
66782755 ATATAATTTT
1 ATATTATTTT
66782765 AAAATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
ATATTATTTTTT
Found at i:66782920 original size:30 final size:30
Alignment explanation
Indices: 66782886--66782950 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
66782876 CAACTTAACA
66782886 AACAAAT-ACCTCTAAAATAATAACAAAATT
1 AACAAATGA-CTCTAAAATAATAACAAAATT
*
66782916 AACAAATGACTTTAAAATAATAACAAAATT
1 AACAAATGACTCTAAAATAATAACAAAATT
66782946 AACAA
1 AACAA
66782951 TAAAATAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.62, C:0.14, G:0.02, T:0.23
Consensus pattern (30 bp):
AACAAATGACTCTAAAATAATAACAAAATT
Found at i:66783255 original size:20 final size:20
Alignment explanation
Indices: 66783230--66783270 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
66783220 TGCAACTTTG
66783230 AAAATT-TTTAATGTTTCCAA
1 AAAATTCTTTAA-GTTTCCAA
*
66783250 AAAATTCTTTGAGTTTCCAA
1 AAAATTCTTTAAGTTTCCAA
66783270 A
1 A
66783271 TTAGTCCCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (20 bp):
AAAATTCTTTAAGTTTCCAA
Found at i:66783537 original size:23 final size:23
Alignment explanation
Indices: 66783511--66783563 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
66783501 TATAAAGCTA
*
66783511 AACTTAATTTTTAATT-AGTATAT
1 AACTTAATTATTAATTAAGTA-AT
66783534 AACTTTAA-TATTAATTAAGTAAT
1 AAC-TTAATTATTAATTAAGTAAT
66783557 AA-TTAAT
1 AACTTAAT
66783564 ATACTTTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 4 0.15
23 14 0.54
24 8 0.31
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (23 bp):
AACTTAATTATTAATTAAGTAAT
Found at i:66783799 original size:21 final size:20
Alignment explanation
Indices: 66783771--66783838 Score: 50
Period size: 23 Copynumber: 3.2 Consensus size: 20
66783761 CACAACTTTT
66783771 TTAA-CTAATAATTCT-AAA
1 TTAATCTAATAATTCTAAAA
* *
66783789 TTAAATTCTAAATATTTTTAAAA
1 TT-AA-TCT-AATAATTCTAAAA
66783812 TTAATCTAATAATATACTAAAAA
1 TTAATCTAATAAT-T-CT-AAAA
66783835 TTAA
1 TTAA
66783839 AGGGCATTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
18 2 0.05
19 2 0.05
20 5 0.13
21 6 0.16
22 10 0.26
23 13 0.34
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (20 bp):
TTAATCTAATAATTCTAAAA
Found at i:66797132 original size:28 final size:26
Alignment explanation
Indices: 66797065--66797138 Score: 71
Period size: 25 Copynumber: 2.8 Consensus size: 26
66797055 ACATATCGCA
* * *
66797065 GCTC-TTATGAGCATCCCGATATATG
1 GCTCTTTATGAGCTTCCCGATTTAAG
*
66797090 GCTCTTT-GGAGCTTCCCGATTTAAAG
1 GCTCTTTATGAGCTTCCCGATTT-AAG
*
66797116 GCTCATTTATGAGCTTCTCGATT
1 GCTC-TTTATGAGCTTCCCGATT
66797139 AATTGGCTCT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
25 16 0.41
26 8 0.21
27 3 0.08
28 12 0.31
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GCTCTTTATGAGCTTCCCGATTTAAG
Found at i:66798533 original size:21 final size:20
Alignment explanation
Indices: 66798509--66798548 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
66798499 TGTTTGGTTT
*
66798509 ATGATATAAATGTCAAATGAA
1 ATGAAATAAATGT-AAATGAA
*
66798530 ATGAAATATATGTAAATGA
1 ATGAAATAAATGTAAATGA
66798549 TCTGTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30
Consensus pattern (20 bp):
ATGAAATAAATGTAAATGAA
Found at i:66801212 original size:15 final size:15
Alignment explanation
Indices: 66801192--66801222 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
66801182 AGCTATTGTC
66801192 TTTGCTCTGAAAATT
1 TTTGCTCTGAAAATT
*
66801207 TTTGCTTTGAAAATT
1 TTTGCTCTGAAAATT
66801222 T
1 T
66801223 GGCGACACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.52
Consensus pattern (15 bp):
TTTGCTCTGAAAATT
Found at i:66807663 original size:37 final size:40
Alignment explanation
Indices: 66807571--66807704 Score: 107
Period size: 40 Copynumber: 3.4 Consensus size: 40
66807561 ACACCAGTTT
*
66807571 GCACCCAGTGCCTCATCGGATAATTCGAAATAATAATTTG
1 GCACCCAGTGCCTCATCGGATAACTCGAAATAATAATTTG
* ** * *
66807611 ACACCCAGTATCTCATCGGCTAAACT-GAAGT-A-AA-TTG
1 GCACCCAGTGCCTCATCGGAT-AACTCGAAATAATAATTTG
** *
66807648 GCACCCAGTGCCTCATCAAATATA-TCTGAAGTAATAATTTG
1 GCACCCAGTGCCTCATCGGATA-ACTC-GAAATAATAATTTG
* *
66807689 ACACCCAGTGTCTCAT
1 GCACCCAGTGCCTCAT
66807705 TGACTCGAAG
Statistics
Matches: 73, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
36 2 0.03
37 19 0.26
38 7 0.10
39 2 0.03
40 23 0.32
41 20 0.27
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (40 bp):
GCACCCAGTGCCTCATCGGATAACTCGAAATAATAATTTG
Found at i:66808873 original size:16 final size:16
Alignment explanation
Indices: 66808852--66808884 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
66808842 TAATTTCTCC
*
66808852 TTTCTTTCTTTCTCTT
1 TTTCTTTCTTTCCCTT
66808868 TTTCTTTCTTTCCCTT
1 TTTCTTTCTTTCCCTT
66808884 T
1 T
66808885 CTGTTTTCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTCTTTCTTTCCCTT
Found at i:66815232 original size:52 final size:52
Alignment explanation
Indices: 66815159--66815270 Score: 206
Period size: 52 Copynumber: 2.2 Consensus size: 52
66815149 AGGGAAAAAT
*
66815159 ACATAGTTTATATTTTATGCTCAAAACCATATCACTTAAATAGAATTGGAAA
1 ACATGGTTTATATTTTATGCTCAAAACCATATCACTTAAATAGAATTGGAAA
*
66815211 ACATGGTTTATATTTTATGCTCCAAACCATATCACTTAAATAGAATTGGAAA
1 ACATGGTTTATATTTTATGCTCAAAACCATATCACTTAAATAGAATTGGAAA
66815263 ACATGGTT
1 ACATGGTT
66815271 ACTCAACAAG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (52 bp):
ACATGGTTTATATTTTATGCTCAAAACCATATCACTTAAATAGAATTGGAAA
Found at i:66828748 original size:2 final size:2
Alignment explanation
Indices: 66828741--66828766 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
66828731 TTTTGAGGAA
66828741 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
66828767 TGTTGTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66833482 original size:16 final size:16
Alignment explanation
Indices: 66833450--66833483 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
66833440 AAAATATTAT
*
66833450 TTATTTAATCAATTAA
1 TTATTTAATCAAATAA
*
66833466 TTATTTAATTAAATAA
1 TTATTTAATCAAATAA
66833482 TT
1 TT
66833484 TTTTCCATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATTTAATCAAATAA
Found at i:66837133 original size:90 final size:89
Alignment explanation
Indices: 66836948--66837174 Score: 334
Period size: 90 Copynumber: 2.6 Consensus size: 89
66836938 TATGTAGCAT
* * * *
66836948 CACCAATGTGGTCATGCCAAAGAGAATGGTTCCACCAAAAT-AAAAT-AAAAATCATTTTTATAG
1 CACCAAAGTGGTCACGCCAAAGAGAATGGCTCCACCAAAATAAAAATAAAAAATAATTTTTATAG
66837011 TGGTCACACCATTCTCAATGGCAC
66 TGGTCACACCATTCTCAATGGCAC
*
66837035 CACCAAAGTGGTCACGCCAAAGAGAATGGCTCCACCAAAATAAAAATAAAAAATTAATTTTTATG
1 CACCAAAGTGGTCACGCCAAAGAGAATGGCTCCACCAAAATAAAAATAAAAAA-TAATTTTTATA
*
66837100 GTGGTCACGCCATTCTCAATGGCAC
65 GTGGTCACACCATTCTCAATGGCAC
* * * *
66837125 CACCAAAGTGGTCACGTCAAAGTGAATGACTCCACTAAAATAAAAA-AAAA
1 CACCAAAGTGGTCACGCCAAAGAGAATGGCTCCACCAAAATAAAAATAAAA
66837175 TTATTATTAA
Statistics
Matches: 127, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
87 38 0.30
88 5 0.04
89 9 0.07
90 75 0.59
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (89 bp):
CACCAAAGTGGTCACGCCAAAGAGAATGGCTCCACCAAAATAAAAATAAAAAATAATTTTTATAG
TGGTCACACCATTCTCAATGGCAC
Found at i:66839437 original size:30 final size:30
Alignment explanation
Indices: 66839403--66839465 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
66839393 ACTTATTTTA
66839403 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
66839433 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
66839463 TTG
1 TTG
66839466 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:66839621 original size:13 final size:11
Alignment explanation
Indices: 66839587--66839614 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
66839577 TATATATGTT
66839587 TAAAAATAATA
1 TAAAAATAATA
66839598 TAAAAATAATA
1 TAAAAATAATA
66839609 TAAAAA
1 TAAAAA
66839615 ATTAATAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:66839899 original size:13 final size:14
Alignment explanation
Indices: 66839878--66839911 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
66839868 AACATACAAA
66839878 AATAATT-AAAAAT
1 AATAATTAAAAAAT
*
66839891 AATATTTAAAAAAT
1 AATAATTAAAAAAT
66839905 AATAATT
1 AATAATT
66839912 TTTTATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
AATAATTAAAAAAT
Found at i:66842351 original size:39 final size:39
Alignment explanation
Indices: 66842277--66842352 Score: 93
Period size: 39 Copynumber: 1.9 Consensus size: 39
66842267 CCTCTGTTTA
* *
66842277 TTTTACCCATTTTCTTATATTTTCTTCTCATCAAACAAT
1 TTTTACCCATTTTCTTATATTTTCATCTCACCAAACAAT
*
66842316 TTTTACCAGATTTTCTTAT-TTTCTCATC-CACCAAACA
1 TTTTACC-CATTTTCTTATATTT-TCATCTCACCAAACA
66842353 CCCCCCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 18 0.56
40 14 0.44
ACGTcount: A:0.26, C:0.25, G:0.01, T:0.47
Consensus pattern (39 bp):
TTTTACCCATTTTCTTATATTTTCATCTCACCAAACAAT
Found at i:66846079 original size:136 final size:137
Alignment explanation
Indices: 66845835--66846108 Score: 541
Period size: 136 Copynumber: 2.0 Consensus size: 137
66845825 TAAAATAAAT
66845835 TCATGTATTTATTTTTTAAAATGTGTGTAAATGAACTGAGATTAAATCTCCATATATATTTAAAT
1 TCATGTATTTATTTTTTAAAATGTGTGTAAATGAACTGAGATTAAATCTCCATATATATTTAAAT
66845900 TATATCAAATTAAAATTTCAGGTTTATTTCTTTGAAGGAGATGCAGTTTAATTATTTATAC-TAT
66 TATATCAAATTAAAATTTCAGGTTTATTTCTTTGAAGGAGATGCAGTTTAATTATTTATACATAT
66845964 ATATATA
131 ATATATA
66845971 TCATGTATTTATTTTTTAAAATGTGTGTAAATGAACTGAGATTAAATCTCCATATATATTTAAAT
1 TCATGTATTTATTTTTTAAAATGTGTGTAAATGAACTGAGATTAAATCTCCATATATATTTAAAT
66846036 TATATCAAATTAAAATTTCAGGTTTATTTCTTTGAAGGAGATGCAGTTTAATTATTTATACATAT
66 TATATCAAATTAAAATTTCAGGTTTATTTCTTTGAAGGAGATGCAGTTTAATTATTTATACATAT
66846101 ATATATA
131 ATATATA
66846108 T
1 T
66846109 ATATGATATT
Statistics
Matches: 137, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
136 126 0.92
137 11 0.08
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.45
Consensus pattern (137 bp):
TCATGTATTTATTTTTTAAAATGTGTGTAAATGAACTGAGATTAAATCTCCATATATATTTAAAT
TATATCAAATTAAAATTTCAGGTTTATTTCTTTGAAGGAGATGCAGTTTAATTATTTATACATAT
ATATATA
Found at i:66847706 original size:16 final size:16
Alignment explanation
Indices: 66847682--66847717 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
66847672 TAGATTATGG
* *
66847682 ATTTTAAAATGTTAGT
1 ATTTCAAAATATTAGT
66847698 ATTTCAAAATATTAGT
1 ATTTCAAAATATTAGT
66847714 ATTT
1 ATTT
66847718 GTGATTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (16 bp):
ATTTCAAAATATTAGT
Found at i:66850381 original size:8 final size:9
Alignment explanation
Indices: 66850353--66850379 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
66850343 AATCGATTCC
66850353 ATTAAAAAA
1 ATTAAAAAA
66850362 ATTAAAAAA
1 ATTAAAAAA
66850371 ATTAAAAAA
1 ATTAAAAAA
66850380 TTTCGGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
ATTAAAAAA
Found at i:66854719 original size:98 final size:99
Alignment explanation
Indices: 66854603--66854806 Score: 376
Period size: 98 Copynumber: 2.1 Consensus size: 99
66854593 TAAAAATTTA
66854603 TAATTTATAATATATATTTTAATTGAATGATAATTAATGTTTAAGATTAATTATATCTTGAGATT
1 TAATTTATAATATATATTTTAATTGAATGATAATTAATGTTTAAGATTAATTATATCTTGAGATT
66854668 CGATAAAAGTAAGTATTTAATATCCAAAC-TCAT
66 CGATAAAAGTAAGTATTTAATATCCAAACATCAT
66854701 TAATTTATAATA-ATTATTTTAATTGAATGATAATTAATGTTTAAGATTAATTATATCTTGAGAT
1 TAATTTATAATATA-TATTTTAATTGAATGATAATTAATGTTTAAGATTAATTATATCTTGAGAT
66854765 TCGATAAAAGTAAGTATTTAATATCCAAACTATCAT
65 TCGATAAAAGTAAGTATTTAATATCCAAAC-ATCAT
66854801 TAATTT
1 TAATTT
66854807 CATGAAATCC
Statistics
Matches: 103, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
97 1 0.01
98 92 0.89
100 10 0.10
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.44
Consensus pattern (99 bp):
TAATTTATAATATATATTTTAATTGAATGATAATTAATGTTTAAGATTAATTATATCTTGAGATT
CGATAAAAGTAAGTATTTAATATCCAAACATCAT
Found at i:66862219 original size:20 final size:20
Alignment explanation
Indices: 66862175--66862220 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
66862165 ATCTATATTG
*
66862175 AAGTATCAATACCTTTCCTA
1 AAGTATCAATACCTTTACTA
*
66862195 TAGTATCAATA-CTTTGACTA
1 AAGTATCAATACCTTT-ACTA
66862215 AAGTAT
1 AAGTAT
66862221 TGATACCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (20 bp):
AAGTATCAATACCTTTACTA
Found at i:66862429 original size:2 final size:2
Alignment explanation
Indices: 66862422--66862458 Score: 65
Period size: 2 Copynumber: 18.0 Consensus size: 2
66862412 CATTTCTTAA
66862422 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
66862459 TTTCTTAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:66868135 original size:29 final size:28
Alignment explanation
Indices: 66868094--66868153 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
66868084 TACAAGCTGT
* * *
66868094 ATGCACTCAACAAAATCATCATAGCAGC
1 ATGCACTCAACAAAAACATAACAGCAGC
66868122 ATGCACTTCAACAAAAACATAACAGCAGC
1 ATGCAC-TCAACAAAAACATAACAGCAGC
66868151 ATG
1 ATG
66868154 GTTGGCCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.45, C:0.27, G:0.12, T:0.17
Consensus pattern (28 bp):
ATGCACTCAACAAAAACATAACAGCAGC
Found at i:66868148 original size:26 final size:27
Alignment explanation
Indices: 66868094--66868148 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 27
66868084 TACAAGCTGT
*
66868094 ATGCACTCAACAAAATCATCATAGCAGC
1 ATGCACTCAACAAAA-CATCATAACAGC
66868122 ATGCACTTCAACAAAA-A-CATAACAGC
1 ATGCAC-TCAACAAAACATCATAACAGC
66868148 A
1 A
66868149 GCATGGTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 9 0.36
27 1 0.04
28 6 0.24
29 9 0.36
ACGTcount: A:0.47, C:0.27, G:0.09, T:0.16
Consensus pattern (27 bp):
ATGCACTCAACAAAACATCATAACAGC
Found at i:66886246 original size:1 final size:1
Alignment explanation
Indices: 66886240--66886264 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
66886230 CCTAGTGTTG
66886240 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
66886265 GCATTAGGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:66907918 original size:88 final size:88
Alignment explanation
Indices: 66907659--66907922 Score: 366
Period size: 89 Copynumber: 3.0 Consensus size: 88
66907649 AAAAGCTCTA
* * * * *
66907659 AAACTTTTTCAAAAAAAAGTAATTAAGCCACTGTTTTTTTTTACACTCAATTGGGTATTTGAACT
1 AAACTTTTTC-AAAAAAAGCAATTAAGCCACT-ATTTTTTTTGCACTCAATTGGATAATTGAACT
* *
66907724 TTCAAAATGCATAAAAAAGACCCTC
64 GTCAAAATGCATAAAAAAGGCCCTC
* * *
66907749 AAACTTTTTCAAATAAAGCAATTAAGCCCCTACTTTTTTTTGCACTTAATTGGATAATTGAACTG
1 AAACTTTTTCAAAAAAAGCAATTAAGCCACTA-TTTTTTTTGCACTCAATTGGATAATTGAACTG
*
66907814 TCAAAATGCATCAAAAAGGCCCTC
65 TCAAAATGCATAAAAAAGGCCCTC
** * *
66907838 AAACTTTTTCAAAAAAAGCAATTAATTCACTATTTTTTTTGCACTCAATTGGATACTTGAACTGC
1 AAACTTTTTCAAAAAAAGCAATTAAGCCACTATTTTTTTTGCACTCAATTGGATAATTGAACTGT
66907903 CAAAATGCATAAAAAAGGCC
66 CAAAATGCATAAAAAAGGCC
66907923 AGAGGTGAAT
Statistics
Matches: 154, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
88 49 0.32
89 95 0.62
90 10 0.06
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (88 bp):
AAACTTTTTCAAAAAAAGCAATTAAGCCACTATTTTTTTTGCACTCAATTGGATAATTGAACTGT
CAAAATGCATAAAAAAGGCCCTC
Found at i:66920145 original size:9 final size:9
Alignment explanation
Indices: 66920131--66920257 Score: 50
Period size: 9 Copynumber: 13.4 Consensus size: 9
66920121 ATTTGGTACG
66920131 ATAATTTTT
1 ATAATTTTT
66920140 ATAATTTTTTT
1 ATAA--TTTTT
66920151 ATGAA-TTTT
1 AT-AATTTTT
66920160 AT-ATTTCTT
1 ATAATTT-TT
66920169 -TACATTTTGT
1 ATA-ATTTT-T
66920179 ATAATTTTCTT
1 ATAA-TTT-TT
* *
66920190 ATGA-CTTT
1 ATAATTTTT
*
66920198 ATAAAATTTT
1 AT-AATTTTT
66920208 ATAATTTTT
1 ATAATTTTT
*
66920217 -TATATTTCT
1 ATA-ATTTTT
*
66920226 AT-TTATTTT
1 ATAAT-TTTT
66920235 ATAATTTTTT
1 ATAA-TTTTT
*
66920245 AAAATTTTT
1 ATAATTTTT
66920254 ATAA
1 ATAA
66920258 AATTTTACAG
Statistics
Matches: 89, Mismatches: 11, Indels: 36
0.65 0.08 0.26
Matches are distributed among these distances:
7 1 0.01
8 10 0.11
9 39 0.44
10 19 0.21
11 17 0.19
12 3 0.03
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:66920215 original size:39 final size:37
Alignment explanation
Indices: 66920131--66920216 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 37
66920121 ATTTGGTACG
* *
66920131 ATAATTTTTATAATTTTTTTATGAATTTTATATTTCT
1 ATAATTTTTATAATTTTCTTATGAATTTTAAATTTCT
* *
66920168 TTACATTTTGTATAATTTTCTTATGACTTTATAAAATTT-T
1 ATA-ATTTT-TATAATTTTCTTATGAATTT-T-AAATTTCT
66920208 ATAATTTTT
1 ATAATTTTT
66920217 TATATTTCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
37 2 0.05
38 6 0.15
39 23 0.57
40 4 0.10
41 5 0.12
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (37 bp):
ATAATTTTTATAATTTTCTTATGAATTTTAAATTTCT
Found at i:66920217 original size:10 final size:10
Alignment explanation
Indices: 66920131--66920263 Score: 54
Period size: 10 Copynumber: 13.8 Consensus size: 10
66920121 ATTTGGTACG
66920131 ATAA-TTTTT
1 ATAATTTTTT
66920140 ATAATTTTTTT
1 ATAA-TTTTTT
66920151 ATGAA--TTTT
1 AT-AATTTTTT
66920160 AT-ATTTCTTT
1 ATAATTT-TTT
* *
66920170 A-CATTTTGT
1 ATAATTTTTT
66920179 ATAATTTTCTT
1 ATAATTTT-TT
* *
66920190 ATGA--CTTT
1 ATAATTTTTT
**
66920198 ATAAAATTTT
1 ATAATTTTTT
66920208 ATAATTTTTT
1 ATAATTTTTT
*
66920218 AT-A-TTTCT
1 ATAATTTTTT
66920226 AT--TTATTTT
1 ATAATT-TTTT
66920235 ATAATTTTTT
1 ATAATTTTTT
*
66920245 AAAATTTTTAT
1 ATAATTTTT-T
*
66920256 AAAATTTT
1 ATAATTTT
66920264 ACAGTTTTTA
Statistics
Matches: 96, Mismatches: 12, Indels: 30
0.70 0.09 0.22
Matches are distributed among these distances:
7 1 0.01
8 12 0.12
9 21 0.22
10 38 0.40
11 22 0.23
12 2 0.02
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:66920263 original size:19 final size:19
Alignment explanation
Indices: 66920231--66920274 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
66920221 TTTCTATTTA
**
66920231 TTTTATAATTTTTTAAAAT
1 TTTTATAAAATTTTAAAAT
* *
66920250 TTTTATAAAATTTTACAGT
1 TTTTATAAAATTTTAAAAT
66920269 TTTTAT
1 TTTTAT
66920275 GTACTTTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTATAAAATTTTAAAAT
Found at i:66920468 original size:91 final size:91
Alignment explanation
Indices: 66920367--66920596 Score: 277
Period size: 91 Copynumber: 2.5 Consensus size: 91
66920357 AATTTTTAAT
* * * *
66920367 AAAAGTAGGGGCTTAATTTCTTTTTTTTTTAAA-GTTTGAGGGTCTTTTTGTTGCATTTTGAAAG
1 AAAAGTAGGGGCTTAATTGC-TTTTTTTTAAAATGTTTGAGGGCCTTTTTGATGCATTTTGAAAG
*
66920431 TTCAAGTACCCAATTGAGTGCAAAAAA
65 TTCAAGTACCCAAATGAGTGCAAAAAA
*
66920458 AAAAGTAGGGGCTTAATTGCTTTTTTTTAAAATGTTTGAGGGCCTTTTTGATGTATTTTGAAAGT
1 AAAAGTAGGGGCTTAATTGCTTTTTTTTAAAATGTTTGAGGGCCTTTTTGATGCATTTTGAAAGT
* * *
66920523 TCAAGTTCTCAAATGAGTGCATAAAA
66 TCAAGTACCCAAATGAGTGCAAAAAA
* * * * * * * *
66920549 AGAA-CAGGGGTTTAGTTGCTATTTTTGAAAACGTTTGTGGG-CTTTTTG
1 AAAAGTAGGGGCTTAATTGCTTTTTTTTAAAATGTTTGAGGGCCTTTTTG
66920597 CACCCTTAAA
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
89 7 0.06
90 41 0.34
91 73 0.60
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.40
Consensus pattern (91 bp):
AAAAGTAGGGGCTTAATTGCTTTTTTTTAAAATGTTTGAGGGCCTTTTTGATGCATTTTGAAAGT
TCAAGTACCCAAATGAGTGCAAAAAA
Found at i:66920965 original size:9 final size:9
Alignment explanation
Indices: 66920873--66920994 Score: 51
Period size: 9 Copynumber: 13.7 Consensus size: 9
66920863 AAAAATCACG
66920873 ATTTTTATAA
1 ATTTTTAT-A
* *
66920883 AATTTTACA
1 ATTTTTATA
*
66920892 ATTCTTATA
1 ATTTTTATA
*
66920901 ATTTTTTTCTA
1 A--TTTTTATA
66920912 ATTTTTAATA
1 ATTTTT-ATA
*
66920922 AATTTTA-A
1 ATTTTTATA
66920930 ATGTTTT-T-
1 AT-TTTTATA
*
66920938 -TTATTA-A
1 ATTTTTATA
* *
66920945 AATTTAATA
1 ATTTTTATA
66920954 ATTTTTATA
1 ATTTTTATA
*
66920963 ATTTTTATTG
1 ATTTTTA-TA
66920973 ATTTTTAT-
1 ATTTTTATA
*
66920981 -TTTTTATC
1 ATTTTTATA
66920989 ATTTTT
1 ATTTTT
66920995 TGTCACATGT
Statistics
Matches: 83, Mismatches: 17, Indels: 25
0.66 0.14 0.20
Matches are distributed among these distances:
6 3 0.04
7 8 0.10
8 5 0.06
9 39 0.47
10 21 0.25
11 7 0.08
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (9 bp):
ATTTTTATA
Found at i:66920980 original size:10 final size:10
Alignment explanation
Indices: 66920935--66920981 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
66920925 TTTAAATGTT
66920935 TTTTTATTAA
1 TTTTTATTAA
** *
66920945 AATTTAATAA
1 TTTTTATTAA
66920955 TTTTTA-TAA
1 TTTTTATTAA
*
66920964 TTTTTATTGA
1 TTTTTATTAA
66920974 TTTTTATT
1 TTTTTATT
66920982 TTTTATCATT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
9 9 0.30
10 21 0.70
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTTTATTAA
Found at i:66922834 original size:90 final size:95
Alignment explanation
Indices: 66922672--66922922 Score: 240
Period size: 95 Copynumber: 2.7 Consensus size: 95
66922662 CGCCCCTAGC
* * * * *
66922672 CTTTTTGATGCATTTTTG-CAGTTCAAGTGCCCAATT-AGTAC-TAAAAAAGAGCACATGCTTAA
1 CTTTTTGATGCA-TTTTGACAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAGCACATGATTAA
*
66922734 TTGCT-TTTTTTGGAAAAAGTTTAAGG-GA-
65 TTGCTGTTTTTTGGAAAAAGTTTAAGGTCAT
* *
66922762 CTTTTTGATGCATTTTGACAGTTCAAGTACCCAATTGAGTGCAGAAAAAAAAG-AGGA-GATTAA
1 CTTTTTGATGCATTTTGACAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAGCA-CATGATTAA
* * *
66922825 TTG-TGTTTTTTTTTGAAAAATTTTGAGGTCAT
65 TTGCTG--TTTTTTGGAAAAAGTTTAAGGTCAT
* * *
66922857 TTTTTTTATGCATTTTGAAAGTTCAAGTACCCAATTGAGTG-AAAAAAAAAA-CA-A-GACTTAA
1 CTTTTTGATGCATTTTGACAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAGCACATGA-TTAA
66922918 TTGCT
65 TTGCT
66922923 TTTAAAAAAA
Statistics
Matches: 135, Mismatches: 14, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
89 5 0.04
90 30 0.22
91 13 0.10
92 12 0.09
93 25 0.19
94 12 0.09
95 38 0.28
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.37
Consensus pattern (95 bp):
CTTTTTGATGCATTTTGACAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAGCACATGATTAAT
TGCTGTTTTTTGGAAAAAGTTTAAGGTCAT
Found at i:66924595 original size:50 final size:50
Alignment explanation
Indices: 66924531--66924716 Score: 273
Period size: 50 Copynumber: 3.7 Consensus size: 50
66924521 ATTTGGGTAA
*
66924531 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
1 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* * *
66924581 AGTGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* **
66924631 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCGTCATG
1 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
** *
66924681 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATATAAGACCATGTCTGGGACATGGC
66924717 TTTGGCATGT
Statistics
Matches: 121, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 92 0.76
51 29 0.24
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
Found at i:66926191 original size:19 final size:19
Alignment explanation
Indices: 66926147--66926330 Score: 112
Period size: 19 Copynumber: 9.9 Consensus size: 19
66926137 GCCTAATGTG
* **
66926147 ATACCAAAATCTTTAACGG
1 ATACCAAAATCTCTAACAA
**
66926166 ATGTCAAAATCTCTAACAA
1 ATACCAAAATCTCTAACAA
* **
66926185 ATATCAAAAAT-TCTAACTG
1 ATA-CCAAAATCTCTAACAA
66926204 ATACCAAAATCTCTAACCAA
1 ATACCAAAATCTCTAA-CAA
* * ***
66926224 ATACTAAAGTCTCTAATTG
1 ATACCAAAATCTCTAACAA
***
66926243 ATACCAAAATCTCTAATGG
1 ATACCAAAATCTCTAACAA
* *
66926262 ATACCAAAATTTGTAACCAA
1 ATACCAAAATCTCTAA-CAA
*
66926282 ATACCACAATCTCTAAC--
1 ATACCAAAATCTCTAACAA
66926299 --A--AAAATCTCTAACAA
1 ATACCAAAATCTCTAACAA
*
66926314 ATACCAAAATTTCTAAC
1 ATACCAAAATCTCTAAC
66926331 CATATATAGA
Statistics
Matches: 124, Mismatches: 31, Indels: 20
0.71 0.18 0.11
Matches are distributed among these distances:
13 11 0.09
15 1 0.01
17 1 0.01
18 6 0.05
19 72 0.58
20 33 0.27
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (19 bp):
ATACCAAAATCTCTAACAA
Found at i:66926225 original size:39 final size:38
Alignment explanation
Indices: 66926147--66926258 Score: 127
Period size: 39 Copynumber: 2.9 Consensus size: 38
66926137 GCCTAATGTG
* * * **
66926147 ATACCAAAATCTTTAACGGATGTCAAAATCTCTAACAA
1 ATACAAAAATCTCTAACTGATACCAAAATCTCTAACAA
66926185 ATATCAAAAAT-TCTAACTGATACCAAAATCTCTAACCAA
1 ATA-CAAAAATCTCTAACTGATACCAAAATCTCTAA-CAA
* * *
66926224 ATACTAAAGTCTCTAATTGATACCAAAATCTCTAA
1 ATACAAAAATCTCTAACTGATACCAAAATCTCTAA
66926259 TGGATACCAA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
38 28 0.44
39 35 0.56
ACGTcount: A:0.46, C:0.21, G:0.05, T:0.28
Consensus pattern (38 bp):
ATACAAAAATCTCTAACTGATACCAAAATCTCTAACAA
Found at i:66926307 original size:13 final size:13
Alignment explanation
Indices: 66926289--66926314 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66926279 CAAATACCAC
66926289 AATCTCTAACAAA
1 AATCTCTAACAAA
66926302 AATCTCTAACAAA
1 AATCTCTAACAAA
66926315 TACCAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (13 bp):
AATCTCTAACAAA
Found at i:66936777 original size:83 final size:84
Alignment explanation
Indices: 66936638--66936804 Score: 327
Period size: 83 Copynumber: 2.0 Consensus size: 84
66936628 GGGGTTGGCA
66936638 GGGGTTTTGGTCCCTTAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAA
1 GGGGTTTTGGTCCCTTAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAA
66936703 ATTAGT-AAGGTAAAATTG
66 ATTAGTAAAGGTAAAATTG
66936721 GGGGTTTTGGTCCCTTAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAA
1 GGGGTTTTGGTCCCTTAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAA
66936786 ATTAGTAAAGGTAAAATTG
66 ATTAGTAAAGGTAAAATTG
66936805 CACTTTATCC
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
83 71 0.86
84 12 0.14
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (84 bp):
GGGGTTTTGGTCCCTTAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAA
ATTAGTAAAGGTAAAATTG
Found at i:66936824 original size:83 final size:83
Alignment explanation
Indices: 66936648--66936825 Score: 261
Period size: 83 Copynumber: 2.1 Consensus size: 83
66936638 GGGGTTTTGG
*
66936648 TCCCTTAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAAATTAGTAAGG
1 TCCCTAAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAAATTAGTAAGG
*** **
66936713 TAAAATTGGGGGTTTTGG
66 TAAAATTGGCACTTTTCC
*
66936731 TCCCTTAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAAATTAGTAAAG
1 TCCCTAAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAAATTAGT-AAG
66936796 GTAAAATT-GCACTTTATCC
65 GTAAAATTGGCACTTT-TCC
66936815 T-CCTAAAAATG
1 TCCCTAAAAATG
66936826 ATAAAAACTT
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
83 74 0.85
84 13 0.15
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (83 bp):
TCCCTAAAAATGGAAAATTTTTCATTTACGTCTTTTGAAATTTTTAAAATTTTAAATTAGTAAGG
TAAAATTGGCACTTTTCC
Found at i:66947403 original size:21 final size:19
Alignment explanation
Indices: 66947364--66947406 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
66947354 GTATGTAATT
66947364 TATATGAAATTAAATTAAA
1 TATATGAAATTAAATTAAA
66947383 TATAT-AATATTATAATGTAAA
1 TATATGAA-ATTA-AAT-TAAA
66947404 TAT
1 TAT
66947407 TAAAGTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 2 0.10
19 9 0.43
20 3 0.14
21 7 0.33
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
TATATGAAATTAAATTAAA
Found at i:66950999 original size:78 final size:79
Alignment explanation
Indices: 66950911--66951076 Score: 318
Period size: 78 Copynumber: 2.1 Consensus size: 79
66950901 TTTATTATCT
66950911 ATTTACAAATATAAATATATATTTTTCATTTTTATTCTAAGTAATTCCATATTACAATATAAGCA
1 ATTTACAAATATAAATATATATTTTTCATTTTTATTCTAAGTAATTCCATATTACAATATAAGCA
66950976 TTT-AATAAAAATA
66 TTTAAATAAAAATA
66950989 ATTTACAAATATAAATATATATTTTTCATTTTTATTCTAAGTAATTCCATATTACAATATAAGCA
1 ATTTACAAATATAAATATATATTTTTCATTTTTATTCTAAGTAATTCCATATTACAATATAAGCA
66951054 TTTAAATAAAAATA
66 TTTAAATAAAAATA
66951068 ATTTA-AAAT
1 ATTTACAAAT
66951077 CTTCTAGTAC
Statistics
Matches: 87, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
78 72 0.83
79 15 0.17
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.43
Consensus pattern (79 bp):
ATTTACAAATATAAATATATATTTTTCATTTTTATTCTAAGTAATTCCATATTACAATATAAGCA
TTTAAATAAAAATA
Found at i:66953409 original size:27 final size:27
Alignment explanation
Indices: 66953371--66953426 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
66953361 GCTTCATGGA
*
66953371 TATCAATAGGTACAGTAGCAGATAAAC
1 TATCAATAGGTACAATAGCAGATAAAC
* * *
66953398 TATCAGTAGGTACAATATCAGATGAAC
1 TATCAATAGGTACAATAGCAGATAAAC
66953425 TA
1 TA
66953427 GTTACCCTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (27 bp):
TATCAATAGGTACAATAGCAGATAAAC
Found at i:66971234 original size:14 final size:14
Alignment explanation
Indices: 66971215--66971252 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
66971205 GATGAAGCTA
66971215 TCACTTATCACTTG
1 TCACTTATCACTTG
*
66971229 TCACTTGTCACTTG
1 TCACTTATCACTTG
*
66971243 TCACTAATCA
1 TCACTTATCA
66971253 GATAAGTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.08, T:0.39
Consensus pattern (14 bp):
TCACTTATCACTTG
Found at i:66971240 original size:58 final size:58
Alignment explanation
Indices: 66971173--66971284 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
66971163 ACCAATTATG
* * * *
66971173 ACTTATCACTTGTCACTGATTAGATAAGTGTAGATGAAGCTATCACTTATCACTTGTC
1 ACTTATCACTTGTCACTAATCAGATAAGTGTAGATAAAGCTACCACTTATCACTTGTC
* *
66971231 ACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCACTTATCACT
1 ACTTATCACTTGTCACTAATCAGATAAGTGTAGATAAAGCTACCACTTATCACT
66971285 GATCAGAAGT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (58 bp):
ACTTATCACTTGTCACTAATCAGATAAGTGTAGATAAAGCTACCACTTATCACTTGTC
Found at i:66971278 original size:51 final size:51
Alignment explanation
Indices: 66971114--66971284 Score: 207
Period size: 51 Copynumber: 3.2 Consensus size: 51
66971104 TACGTATGAT
* *
66971114 CACTTATCACTTGTCGCTTGTCACTGATTAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTGTCACTTGTCACTGATTAGATAAGTGTAGCTAAAGCTAC
* * * * * *
66971165 CAATTATGACTTATCACTTGTCACTGATTAGATAAGTGTAGATGAAGCTAT
1 CACTTATCACTTGTCACTTGTCACTGATTAGATAAGTGTAGCTAAAGCTAC
66971216 CACTTATCACTTGTCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTTGTCAC-TG--A-T--T-AGATAAGTGTAGCTAAAGCTAC
66971274 CACTTATCACT
1 CACTTATCACT
66971285 GATCAGAAGT
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
51 64 0.65
52 2 0.02
54 1 0.01
55 1 0.01
57 1 0.01
58 30 0.30
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (51 bp):
CACTTATCACTTGTCACTTGTCACTGATTAGATAAGTGTAGCTAAAGCTAC
Found at i:66977021 original size:50 final size:50
Alignment explanation
Indices: 66976857--66977166 Score: 407
Period size: 51 Copynumber: 6.3 Consensus size: 50
66976847 ACTTCTGAGC
* *
66976857 AGTGATCAGTGATACGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
*
66976908 CGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
* * *
66976959 AGTGATATGTGATAAGTGGTAGCTTAACTACTCTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
** *
66977009 AGTGGCAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTT-AGCTACACTTATCTGATCAGTGACA
* * *
66977060 AGTGATATGTGATAAGTGGTAGCTTAACTACTCTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
** * *
66977110 AGTGGCAAGTGATAAGT-G--G--TAGC-ACACTTATCTGATCTGGGACA
1 AGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
66977154 AGTGATAAGTGAT
1 AGTGATAAGTGAT
66977167 CATACGTAAG
Statistics
Matches: 230, Mismatches: 28, Indels: 9
0.86 0.10 0.03
Matches are distributed among these distances:
44 29 0.13
45 3 0.01
47 1 0.00
49 1 0.00
50 83 0.36
51 113 0.49
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (50 bp):
AGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
Found at i:66977166 original size:101 final size:101
Alignment explanation
Indices: 66976857--66977132 Score: 455
Period size: 101 Copynumber: 2.7 Consensus size: 101
66976847 ACTTCTGAGC
* * * * **
66976857 AGTGATCA-GTGATACGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACACGTGATAAGTGAT
1 AGTGAT-ATGTGATAAGTGGTAGC-TTAACTACTCTTATCTGATCAGTGACAAGTGGCAAGTGAT
*
66976921 AAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
64 AAGTGGTAGCTTCAGCTACACTTATCTGATCAGTGACA
66976959 AGTGATATGTGATAAGTGGTAGCTTAACTACTCTTATCTGATCAGTGACAAGTGGCAAGTGATAA
1 AGTGATATGTGATAAGTGGTAGCTTAACTACTCTTATCTGATCAGTGACAAGTGGCAAGTGATAA
*
66977024 GTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
66 GTGGTAGCTTCAGCTACACTTATCTGATCAGTGACA
66977060 AGTGATATGTGATAAGTGGTAGCTTAACTACTCTTATCTGATCAGTGACAAGTGGCAAGTGATAA
1 AGTGATATGTGATAAGTGGTAGCTTAACTACTCTTATCTGATCAGTGACAAGTGGCAAGTGATAA
66977125 GTGGTAGC
66 GTGGTAGC
66977133 ACACTTATCT
Statistics
Matches: 164, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
101 144 0.88
102 20 0.12
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (101 bp):
AGTGATATGTGATAAGTGGTAGCTTAACTACTCTTATCTGATCAGTGACAAGTGGCAAGTGATAA
GTGGTAGCTTCAGCTACACTTATCTGATCAGTGACA
Found at i:66977621 original size:30 final size:30
Alignment explanation
Indices: 66977584--66977724 Score: 132
Period size: 30 Copynumber: 4.8 Consensus size: 30
66977574 ATTTTTATTT
66977584 TTACATTTTGACCCCTAAACTTTTCTAAAA
1 TTACATTTTGACCCCTAAACTTTTCTAAAA
* *
66977614 TTGCATTTTAACCCCTAAA-TTTTCTTAAAA
1 TTACATTTTGACCCCTAAACTTTTC-TAAAA
*
66977644 TTACATTTCT-ACGCCTAAACTTTTCT-AAA
1 TTACATTT-TGACCCCTAAACTTTTCTAAAA
* *
66977673 TTACA-TTTGGCCCC-ATA-TTTTCCTAAAA
1 TTACATTTTGACCCCTAAACTTTT-CTAAAA
* * *
66977701 TTGCATTTTTACCCCAGAAACTTT
1 TTACATTTTGACCCC-TAAACTTT
66977725 GCACCCTATG
Statistics
Matches: 90, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
26 4 0.04
27 5 0.06
28 12 0.13
29 20 0.22
30 38 0.42
31 8 0.09
32 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
TTACATTTTGACCCCTAAACTTTTCTAAAA
Found at i:66978067 original size:34 final size:33
Alignment explanation
Indices: 66978023--66978088 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
66978013 CAACTAGCAA
66978023 AACAACCAAAA-AGCAAAAAAAAAGAGAAAGAAAC
1 AACAACCAAAAGAG--AAAAAAAAGAGAAAGAAAC
*
66978057 AACAAGCAAAAGAGAAAAAAAAGAGAAAGAAA
1 AACAACCAAAAGAGAAAAAAAAGAGAAAGAAA
66978089 AAAGAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 18 0.60
34 10 0.33
35 2 0.07
ACGTcount: A:0.74, C:0.11, G:0.15, T:0.00
Consensus pattern (33 bp):
AACAACCAAAAGAGAAAAAAAAGAGAAAGAAAC
Found at i:66978080 original size:11 final size:12
Alignment explanation
Indices: 66978041--66978098 Score: 54
Period size: 11 Copynumber: 5.2 Consensus size: 12
66978031 AAAAGCAAAA
66978041 AAAAAGAGAAAG
1 AAAAAGAGAAAG
* *
66978053 AAACA-A-CAAG
1 AAAAAGAGAAAG
*
66978063 CAAAAGAGAAA-
1 AAAAAGAGAAAG
66978074 AAAAAGAGAAAG
1 AAAAAGAGAAAG
66978086 AAAAA-AG-AAG
1 AAAAAGAGAAAG
66978096 AAA
1 AAA
66978099 GATGGGGGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
10 12 0.32
11 14 0.38
12 11 0.30
ACGTcount: A:0.76, C:0.05, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:66978220 original size:13 final size:13
Alignment explanation
Indices: 66978202--66978262 Score: 61
Period size: 13 Copynumber: 4.6 Consensus size: 13
66978192 TGATCAGGAA
66978202 AGAAAGAAAAAAG
1 AGAAAGAAAAAAG
*
66978215 AGAAAGAAAAGAG
1 AGAAAGAAAAAAG
66978228 AAGAAAGAAAGAAA-
1 -AGAAAGAAA-AAAG
* * *
66978242 AAAAAGAGAAAAC
1 AGAAAGAAAAAAG
66978255 AGAAAGAA
1 AGAAAGAA
66978263 GAAGGAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
12 3 0.08
13 25 0.64
14 9 0.23
15 2 0.05
ACGTcount: A:0.75, C:0.02, G:0.23, T:0.00
Consensus pattern (13 bp):
AGAAAGAAAAAAG
Found at i:66978226 original size:22 final size:22
Alignment explanation
Indices: 66978200--66978277 Score: 67
Period size: 22 Copynumber: 3.7 Consensus size: 22
66978190 GCTGATCAGG
66978200 AAAGAAAGAAAAAAGAGAAAGA
1 AAAGAAAGAAAAAAGAGAAAGA
*
66978222 AAAG--AG-AAGAA-AGAAAGA
1 AAAGAAAGAAAAAAGAGAAAGA
* * *
66978240 AAAAAAAGAGAAAACAGAAAGA
1 AAAGAAAGAAAAAAGAGAAAGA
66978262 AGAAGGAAA-AAAAAAG
1 A-AA-GAAAGAAAAAAG
66978278 GGAGATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 11
0.70 0.11 0.18
Matches are distributed among these distances:
18 10 0.23
19 4 0.09
20 4 0.09
21 3 0.07
22 12 0.28
23 7 0.16
24 3 0.07
ACGTcount: A:0.76, C:0.01, G:0.23, T:0.00
Consensus pattern (22 bp):
AAAGAAAGAAAAAAGAGAAAGA
Found at i:66978250 original size:33 final size:33
Alignment explanation
Indices: 66978199--66978276 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
66978189 GGCTGATCAG
66978199 GAAAGAAAG--AAAAAAGAGAAAGA-A-AAGAGAA
1 GAAAGAAAGAAAAAAAAGAGAAA-ACAGAA-AGAA
66978230 GAAAGAAAGAAAAAAAAGAGAAAACAGAAAGAA
1 GAAAGAAAGAAAAAAAAGAGAAAACAGAAAGAA
*
66978263 GAAGGAAA-AAAAAA
1 GAAAGAAAGAAAAAA
66978277 GGGAGATAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
31 9 0.21
32 7 0.17
33 24 0.57
34 2 0.05
ACGTcount: A:0.76, C:0.01, G:0.23, T:0.00
Consensus pattern (33 bp):
GAAAGAAAGAAAAAAAAGAGAAAACAGAAAGAA
Found at i:66978253 original size:11 final size:11
Alignment explanation
Indices: 66978208--66978253 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
66978198 GGAAAGAAAG
66978208 AAAAAAGAGAA
1 AAAAAAGAGAA
*
66978219 AGAAAAGAGAA
1 AAAAAAGAGAA
*
66978230 GAAAGAA-AGAA
1 -AAAAAAGAGAA
66978241 AAAAAAGAGAA
1 AAAAAAGAGAA
66978252 AA
1 AA
66978254 CAGAAAGAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 5 0.17
11 20 0.69
12 4 0.14
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
AAAAAAGAGAA
Found at i:66978262 original size:11 final size:10
Alignment explanation
Indices: 66978200--66978277 Score: 52
Period size: 11 Copynumber: 7.4 Consensus size: 10
66978190 GCTGATCAGG
66978200 AAAGAAAGAA
1 AAAGAAAGAA
*
66978210 AAA-AGAGAA
1 AAAGAAAGAA
66978219 AGAA-AAGAGAA
1 A-AAGAA-AGAA
66978230 GAAAGAAAGAA
1 -AAAGAAAGAA
*
66978241 AAAAAAGAGAA
1 AAAGAA-AGAA
66978252 AACAGAAAGAA
1 AA-AGAAAGAA
* *
66978263 GAAGGAAAAAA
1 -AAAGAAAGAA
66978274 AAAG
1 AAAG
66978278 GGAGATAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
9 6 0.11
10 14 0.26
11 26 0.48
12 8 0.15
ACGTcount: A:0.76, C:0.01, G:0.23, T:0.00
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:66978419 original size:21 final size:20
Alignment explanation
Indices: 66978381--66978419 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
66978371 CAGCCCTAGG
*
66978381 CCCAAAAAAAAGGCAAAACC
1 CCCAAAAAAAAAGCAAAACC
*
66978401 CCCAAAAAATAAAGTAAAA
1 CCCAAAAAA-AAAGCAAAA
66978420 AAAGAAGCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.64, C:0.23, G:0.08, T:0.05
Consensus pattern (20 bp):
CCCAAAAAAAAAGCAAAACC
Found at i:66979042 original size:17 final size:17
Alignment explanation
Indices: 66979022--66979221 Score: 80
Period size: 17 Copynumber: 10.7 Consensus size: 17
66979012 TAAAAAAATA
66979022 GTGTTTCAAAAATTTTC
1 GTGTTTCAAAAATTTTC
*
66979039 GTGTTTTCAAAAAAAATTCTC
1 GTG-TTTC---AAAAATTTTC
*
66979060 GTGTTTTC-AAAATTCTC
1 GTG-TTTCAAAAATTTTC
**
66979077 GCATTTC-AAAATTTTC
1 GTGTTTCAAAAATTTTC
* *
66979093 TTGTTTTCAAAAAAAAAAGATTTCC
1 GTG-TTTC------AAAA-ATTTTC
* *
66979118 GTGTTTCATAAATTTTT
1 GTGTTTCAAAAATTTTC
* *
66979135 GTGTTTTAAAAAAAATTCTC
1 GTG-TTT--CAAAAATTTTC
*
66979155 GTCTTTCAAAAATTTTC
1 GTGTTTCAAAAATTTTC
**
66979172 GTGTTTTCAAAAAAATTGACC
1 GTG-TTTC--AAAAATT-TTC
*
66979193 GTGTTTCATAAATTTTC
1 GTGTTTCAAAAATTTTC
66979210 GTGTTTCAAAAA
1 GTGTTTCAAAAA
66979222 AAATTCTCGT
Statistics
Matches: 137, Mismatches: 26, Indels: 40
0.67 0.13 0.20
Matches are distributed among these distances:
16 12 0.09
17 47 0.34
18 20 0.15
19 3 0.02
20 20 0.15
21 21 0.15
24 7 0.05
25 7 0.05
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (17 bp):
GTGTTTCAAAAATTTTC
Found at i:66979184 original size:38 final size:38
Alignment explanation
Indices: 66979068--66979325 Score: 183
Period size: 37 Copynumber: 6.6 Consensus size: 38
66979058 TCGTGTTTTC
** *
66979068 AAAATTCTCGCATTTC-AAAATTTTCTTGTTTTCAAAAAAA
1 AAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTC---AAAA
* *
66979108 AAAGATT-TCCGTGTTTCATAAATTTTTGTGTTTT-AAAA
1 AAA-ATTCT-CGTGTTTCAAAAATTTTCGTGTTTTCAAAA
*
66979146 AAAATTCTCGTCTTTCAAAAATTTTCGTGTTTTC-AAA
1 AAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAA
*
66979183 AAAATTGAC-CGTGTTTCATAAATTTTCGTG-TTTCAAAA
1 AAAATT--CTCGTGTTTCAAAAATTTTCGTGTTTTCAAAA
**
66979221 AAAATTCTCGTGTTTCGTTTTTATCAAAATTTTTATGTTTTCAAAA
1 AAAATTCTCGTGTTTC------A--AAAATTTTCGTGTTTTCAAAA
* *
66979267 ACAAATT-TTGTGTTTTAAAAATTTTCGTG-TTTCAAAA
1 A-AAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAA
*
66979304 AGAAAAT-TCGTGTTTTCAAAAA
1 A-AAATTCTCGTG-TTTCAAAAA
66979326 AAAATCTCGT
Statistics
Matches: 177, Mismatches: 21, Indels: 42
0.74 0.09 0.17
Matches are distributed among these distances:
36 1 0.01
37 63 0.36
38 54 0.31
39 1 0.01
40 5 0.03
41 9 0.05
42 13 0.07
43 1 0.01
45 9 0.05
46 16 0.09
47 5 0.03
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (38 bp):
AAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAA
Found at i:66979198 original size:75 final size:76
Alignment explanation
Indices: 66979068--66979236 Score: 227
Period size: 75 Copynumber: 2.2 Consensus size: 76
66979058 TCGTGTTTTC
*
66979068 AAAATTCTCG-CATTTCAAAATTTTCTTGTTTTCAAAAAAAAAAGATTTCCGTGTTTCATAAATT
1 AAAATTCTCGTC-TTTCAAAATTTTCGTGTTTTCAAAAAAAAAAGA--TCCGTGTTTCATAAATT
* *
66979132 TTTGTGTTTTAAAA
63 TTCGTGTTTCAAAA
**
66979146 AAAATTCTCGTCTTTCAAAAATTTTCGTGTTTTC-AAAAAAATTGA-CCGTGTTTCATAAATTTT
1 AAAATTCTCGTCTTTC-AAAATTTTCGTGTTTTCAAAAAAAAAAGATCCGTGTTTCATAAATTTT
66979209 CGTGTTTCAAAA
65 CGTGTTTCAAAA
*
66979221 AAAATTCTCGTGTTTC
1 AAAATTCTCGTCTTTC
66979237 GTTTTTATCA
Statistics
Matches: 83, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
75 43 0.52
78 23 0.28
79 17 0.20
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.43
Consensus pattern (76 bp):
AAAATTCTCGTCTTTCAAAATTTTCGTGTTTTCAAAAAAAAAAGATCCGTGTTTCATAAATTTTC
GTGTTTCAAAA
Found at i:66979261 original size:83 final size:83
Alignment explanation
Indices: 66979163--66979318 Score: 201
Period size: 83 Copynumber: 1.9 Consensus size: 83
66979153 TCGTCTTTCA
* *
66979163 AAAATTTTCGTGTTTTC-AAAA-AAATTGACCGTGTTTCATAAATTTTCGTGTTTCAAAAA-AAA
1 AAAATTTTCATGTTTTCAAAAACAAATT--CCGTGTTTCAAAAATTTTCGTGTTTCAAAAAGAAA
*
66979225 TTCTCGTGTTTCGTTTTTATC
64 AT-TCGTGTTTCGTTTTTATC
* ** *
66979246 AAAATTTTTATGTTTTCAAAAACAAATTTTGTGTTTTAAAAATTTTCGTGTTTCAAAAAGAAAAT
1 AAAATTTTCATGTTTTCAAAAACAAATTCCGTGTTTCAAAAATTTTCGTGTTTCAAAAAGAAAAT
66979311 TCGTGTTT
66 TCGTGTTT
66979319 TCAAAAAAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 50 0.79
84 8 0.13
85 5 0.08
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (83 bp):
AAAATTTTCATGTTTTCAAAAACAAATTCCGTGTTTCAAAAATTTTCGTGTTTCAAAAAGAAAAT
TCGTGTTTCGTTTTTATC
Found at i:66979290 original size:16 final size:17
Alignment explanation
Indices: 66979269--66979304 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
66979259 TTTCAAAAAC
*
66979269 AAATTTT-GTGTTTTAA
1 AAATTTTCGTGTTTCAA
66979285 AAATTTTCGTGTTTCAA
1 AAATTTTCGTGTTTCAA
66979302 AAA
1 AAA
66979305 GAAAATTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (17 bp):
AAATTTTCGTGTTTCAA
Found at i:66979372 original size:36 final size:34
Alignment explanation
Indices: 66979306--66979417 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 34
66979296 TTTCAAAAAG
* *
66979306 AAAATTCGTGTTTTCAAAAAAAAATCTCGTGTTTC
1 AAAATTCGTGTTTT-TAAAAAAAATTTCGTGTTTC
66979341 AAAATTTTCGTGTTTTTAAAAAAAATTTCGTGTTTC
1 AAAA--TTCGTGTTTTTAAAAAAAATTTCGTGTTTC
* *
66979377 TAAAATTCTTGTATTTAAAAAAAGATTTCGTGTTTTC
1 -AAAATTCGTGTTTTTAAAAAAA-ATTTCGTG-TTTC
66979414 AAAA
1 AAAA
66979418 AAAAGAATAA
Statistics
Matches: 68, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
35 20 0.29
36 30 0.44
37 18 0.26
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.42
Consensus pattern (34 bp):
AAAATTCGTGTTTTTAAAAAAAATTTCGTGTTTC
Found at i:66984789 original size:1 final size:1
Alignment explanation
Indices: 66984783--66984856 Score: 58
Period size: 1 Copynumber: 74.0 Consensus size: 1
66984773 TATTATGCCT
* * ** * * * * *
66984783 AAAAAAACAAACAAAAAAAACCAAAAAAAAAAAAAAACAAAAACAACAAAAAAAACAAAAAAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
66984848 AAAGAAAAA
1 AAAAAAAAA
66984857 TCAAGATGAA
Statistics
Matches: 55, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:66984803 original size:9 final size:9
Alignment explanation
Indices: 66984785--66984844 Score: 86
Period size: 9 Copynumber: 6.7 Consensus size: 9
66984775 TTATGCCTAA
66984785 AAAAACAAAC
1 AAAAA-AAAC
66984795 AAAAAAAAC
1 AAAAAAAAC
*
66984804 CAAAAAAA-
1 AAAAAAAAC
66984812 AAAAAAAAC
1 AAAAAAAAC
*
66984821 AAAAACAAC
1 AAAAAAAAC
66984830 AAAAAAAAC
1 AAAAAAAAC
66984839 AAAAAA
1 AAAAAA
66984845 GAAAAAGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
8 7 0.16
9 33 0.73
10 5 0.11
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:66984814 original size:25 final size:24
Alignment explanation
Indices: 66984783--66984850 Score: 86
Period size: 23 Copynumber: 2.8 Consensus size: 24
66984773 TATTATGCCT
66984783 AAAAAAACAAACAAAAAAAACCAA-A
1 AAAAAAACAAA-AAAAAAAA-CAACA
*
66984808 AAAAAAA-AAAAACAAAAACAACA
1 AAAAAAACAAAAAAAAAAACAACA
66984831 AAAAAAACAAAAAAGAAAAA
1 AAAAAAACAAAAAA-AAAAA
66984851 GAAAAATCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
22 3 0.08
23 15 0.39
24 8 0.21
25 12 0.32
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (24 bp):
AAAAAAACAAAAAAAAAAACAACA
Found at i:66984820 original size:26 final size:25
Alignment explanation
Indices: 66984783--66984850 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
66984773 TATTATGCCT
*
66984783 AAAAAAACAAACAAAAAAAACCAAAA
1 AAAAAAAAAAACAAAAAAAA-CAAAA
*
66984809 AAAAAAAAAAACAAAAACAACAAAA
1 AAAAAAAAAAACAAAAAAAACAAAA
* *
66984834 AAAACAAAAAAGAAAAA
1 AAAAAAAAAAACAAAAA
66984851 GAAAAATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
25 20 0.53
26 18 0.47
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (25 bp):
AAAAAAAAAAACAAAAAAAACAAAA
Found at i:66986000 original size:76 final size:75
Alignment explanation
Indices: 66985707--66986692 Score: 675
Period size: 77 Copynumber: 12.9 Consensus size: 75
66985697 TTTTAAGAAA
* ** * *
66985707 TATTTTTCACTTTCTGTTTTTTTTCAAATATCAACTCATAATACGAGAGGTGAGTT-AGCCTTGG
1 TATTTTT-AATTTCTG-TTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGG
66985771 GTTCACGCTGAGG
64 G-TCACGCTGAGG
* ***
66985784 TATTTTTAATTTCGGTTTTTT-TTTAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGT
1 TATTTTTAATTTCTGTTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT
66985847 CACGCTGAGG
66 CACGCTGAGG
* ** * * *
66985857 TATTTTTAATTTATGTCTTTTTTTAAAAATCAACTCATAATAC-ATAGATGAGTTGAGCCTCGAG
1 TATTTTTAATTTCTGT-TTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGG
66985921 TCACGCTGAGG
65 TCACGCTGAGG
* *
66985932 CATTTTTAATTTATGTCTTTTTAAAAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGG
1 TATTTTTAATTTCTGT-TTTTT-AAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGG
66985996 GTCACGCTGAGG
64 GTCACGCTGAGG
* ** * * *
66986008 TATTTTTAATTTCTATTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGG
1 TATTTTTAATTTCT-GTTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGG
66986073 TCACGCTGAGG
65 TCACGCTGAGG
* *
66986084 TATTTTTTTTAAATTTCTGTTTTTCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TA---TTTTT-AATTTCTGTTTTT--TAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCC
* ** * *
66986149 TTGGACCATGCCGAGG
60 TCGGGTCACGCTGAGG
* * * *
66986165 TATTTCTTTTAAATTTCTG-TTTTT-CAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TA--T-TTTT-AATTTCTGTTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTC
* *
66986228 -GGACAATGCTGAGG
62 GGGTC-ACGCTGAGG
* * * * * *
66986242 ATTTCTTTTAAATTTCCG-CTTTTCAAAAAATCAACTCATATTACGAGAGGTAAGTTGAGCCTCG
1 -TAT-TTTT-AATTTCTGTTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCG
** * *
66986306 GACCATGCCGAGG
63 GGTCACGCTGAGG
* * * *
66986319 TATTTCTTTTAAATTTCTG-TTTTT-CAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
1 TA--T-TTTT-AATTTCTGTTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTC
** * *
66986382 GGACCATGCCGAGGTG
62 GGGTCACGCTGA-G-G
* * * * * * * *
66986398 TTTCTTTTAGTTTTCAG-TTTTT-CAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTTGG
1 TAT-TTTTA-ATTTCTGTTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGG
** * *
66986461 ACCATGCCGAGG
64 GTCACGCTGAGG
* * * * *
66986473 TATTTATTTTAAATTTTTG-TTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTC
1 TA--T-TTTT-AATTTCTGTTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTC
*
66986536 GGGTCACGCCGAGG
62 GGGTCACGCTGAGG
* * * * * *
66986550 TATTTTTCAATTCCT-ATTTTT-CAAAAATCAACTCATACTGC-AAAGGGTGAGTTGAGCCTAC-
1 TATTTTT-AATTTCTGTTTTTTAAAAAAATCAACTCATAATACGAGA-GGTGAGTTGAGCCT-CG
* * *
66986611 AGTCGCATGCCGAGG
63 GGT--CACGCTGAGG
* * * *
66986626 TATTCTTTTCAAATTT-TG-TTTTT-CAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TA-T-TTTT--AATTTCTGTTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTC
66986688 GGGTC
62 GGGTC
66986693 GCACGCCGAG
Statistics
Matches: 782, Mismatches: 91, Indels: 73
0.83 0.10 0.08
Matches are distributed among these distances:
73 38 0.05
74 77 0.10
75 95 0.12
76 139 0.18
77 271 0.35
78 68 0.09
79 18 0.02
80 14 0.02
81 62 0.08
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (75 bp):
TATTTTTAATTTCTGTTTTTTAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT
CACGCTGAGG
Found at i:66986271 original size:77 final size:77
Alignment explanation
Indices: 66985957--66986689 Score: 896
Period size: 77 Copynumber: 9.5 Consensus size: 77
66985947 TCTTTTTAAA
* * ** * *
66985957 AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA--T-TTTT-AA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
*
66986017 TTTCTATTTTTTTTC
66 TTTC---TGTTTTTC
* ** * * *
66986032 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACGCTGAGGTATTTTTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
66986097 TTTCTGTTTTTC
66 TTTCTGTTTTTC
*
66986109 ATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGACCATGCCGAGGTATTTCTTT
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTT
66986174 TAAATTTCTGTTTTTC
62 TAAATTTCTGTTTTTC
* * *
66986190 AAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTCGGACAATGCTGAGG-ATTTCTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
* *
66986254 TTTCCGCTTTTC
66 TTTCTGTTTTTC
* *
66986266 AAAAAATCAACTCATATTACGAGAGGTAAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAA
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAA
66986331 ATTTCTGTTTTTC
65 ATTTCTGTTTTTC
* * **
66986344 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGACCATGCCGAGGTGTTTCTTTTAGT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
*
66986409 TTTCAGTTTTTC
66 TTTCTGTTTTTC
* * *
66986421 AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTTGGACCATGCCGAGGTATTTATTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
*
66986486 TTTTTGTTTTTC
66 TTTCTGTTTTTC
* ** * *
66986498 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACGCCGAGGTA--T-TTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
* *
66986560 TTCCTATTTTTC
66 TTTCTGTTTTTC
* * * *
66986572 AAAAATCAACTCATACTGC-AAAGGGTGAGTTGAGCCTACAGTCGCATGCCGAGGTA-TTCTTTT
1 AAAAATCAACTCATATTGCGAGA-GGTGAGTTGAGCCT-CGGAC-CATGCCGAGGTATTTCTTTT
66986635 CAAATTT-TGTTTTTC
63 -AAATTTCTGTTTTTC
*
66986650 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
66986690 GTCGCACGCC
Statistics
Matches: 576, Mismatches: 64, Indels: 34
0.85 0.09 0.05
Matches are distributed among these distances:
73 2 0.00
74 46 0.08
75 20 0.03
76 66 0.11
77 291 0.51
78 65 0.11
79 10 0.02
80 6 0.01
81 70 0.12
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (77 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
TTTCTGTTTTTC
Found at i:66986315 original size:154 final size:153
Alignment explanation
Indices: 66985726--66986689 Score: 909
Period size: 154 Copynumber: 6.3 Consensus size: 153
66985716 CTTTCTGTTT
* * * * * *
66985726 TTTTTCAAATATCAACTCATAATACGAGAGGTGAGTT-AGCCTTGGGTTCACGCTGAGGTA--T-
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGG-ACACGCCGAGGTATTTC
* **** * * ** *
66985787 TTTT-AATTTCGGTTTTTTTTTAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACG
64 TTTTAAATTTCCGTTTTTCAAAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCGGACCATG
* * *
66985851 CTGAGGTATTT-TTAATT-TATGTCT-
129 CCGAGGTATTTCTT--TTAAATTTCTG
* * * * * * * *
66985875 TTTTTTAAAAATCAACTCATAATAC-ATAGATGAGTTGAGCCTCGAGTCACGCTGAGGCA--T-T
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GACACGCCGAGGTATTTCT
** * * * **
66985936 TTT-AATTTATGTCTTTTTAAAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCA
65 TTTAAATTTCCG--TTTTT-CAAAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCGGACCA
* * *
66986000 CGCTGAGGTA--T-TTTT-AATTTCTATTT
127 TGCCGAGGTATTTCTTTTAAATTTC---TG
* * * *
66986026 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACGCTGAGGTATTTTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCCGAGGTATTTCT
* *
66986091 TTTAAATTTCTGTTTTTCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGACC
65 TTTAAATTTCCGTTTTTC---AAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCGGACC
66986156 ATGCCGAGGTATTTCTTTTAAATTTCTG
126 ATGCCGAGGTATTTCTTTTAAATTTCTG
* * *
66986184 TTTTTCAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTCGGACAATGCTGAGG-ATTTCT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAC-ACGCCGAGGTATTTCT
* * *
66986248 TTTAAATTTCCGCTTTTCAAAAAATCAACTCATATTACGAGAGGTAAGTTGAGCCTCGGACCATG
65 TTTAAATTTCCGTTTTTCAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCGGACCATG
66986313 CCGAGGTATTTCTTTTAAATTTCTG
129 CCGAGGTATTTCTTTTAAATTTCTG
* * *
66986338 TTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGACCATGCCGAGGTGTTTCT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGA-CACGCCGAGGTATTTCT
** * *
66986403 TTTAGTTTTCAGTTTTTC-AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTTGGACCATG
65 TTTAAATTTCCGTTTTTCAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCGGACCATG
* *
66986467 CCGAGGTATTTATTTTAAATTTTTG
129 CCGAGGTATTTCTTTTAAATTTCTG
* *
66986492 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACGCCGAGGTA--T-T
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCCGAGGTATTTCT
* * * * * *
66986554 TTTCAA-TTCCTATTTTTC-AAAAATCAACTCATACTGCAAAGGGTGAGTTGAGCCTACAGTCGC
65 TTTAAATTTCC-GTTTTTCAAAAAATCAACTCATATTGCAGA-GGTGAGTTGAGCCT-CGGAC-C
66986617 ATGCCGAGGTA-TTCTTTTCAAATTT-TG
126 ATGCCGAGGTATTTCTTTT-AAATTTCTG
*
66986644 TTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
66986690 GTCGCACGCC
Statistics
Matches: 710, Mismatches: 73, Indels: 62
0.84 0.09 0.07
Matches are distributed among these distances:
147 6 0.01
148 34 0.05
149 31 0.04
150 11 0.02
151 117 0.16
152 81 0.11
153 19 0.03
154 245 0.35
155 26 0.04
156 25 0.04
157 53 0.07
158 51 0.07
159 1 0.00
160 4 0.01
161 6 0.01
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (153 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCCGAGGTATTTCTT
TTAAATTTCCGTTTTTCAAAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCGGACCATGCC
GAGGTATTTCTTTTAAATTTCTG
Found at i:66986420 original size:231 final size:228
Alignment explanation
Indices: 66985808--66986689 Score: 900
Period size: 231 Copynumber: 3.8 Consensus size: 228
66985798 GTTTTTTTTT
* * * *
66985808 AAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATT-TAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTATTTTT--TTAAAT
* * * * * * * * *
66985871 GTCT-TTTTTTAAAAATCAACTCATAATAC-ATAGATGAGTTGAGCCTC-GAGTCACGCTGAGG-
64 TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGA-CCATGCCGAGGT
** * * *
66985932 CAT-TTTTAATTTAT-GTCTTTTTAAAAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTC
128 TTTCTTTTAATTT-TCG--TTTTT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * * ** *
66985994 GGGTC-ACGCTGAGGTATTTTTAATTTCTATTT---TTTTTCAA
188 -GGACAATGCCGAGGTA--TTTATTTTAAATTTCCGCTTTTCAA
* *
66986034 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACGCTGAGGTATTTTTTTTAAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTA-TTTTTTTAAATT
*
66986099 TCTGTTTTTCATAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGACCATGCCGAG
65 TCTGTTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAG
* *
66986164 GTATTTCTTTTAAATTTCTGTTTTTCAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTCG
126 GT-TTTCTTTTAATTTTC-GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
66986229 GACAATGCTGAGG-ATTTCTTTTAAATTTCCGCTTTTCAAA
189 GACAATGCCGAGGTATTTATTTTAAATTTCCGCTTTTC-AA
* * ** *
66986269 AAATCAACTCATATTACGAGAGGTAAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTATTT-TTTTAAATT
*
66986334 TCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGACCATGCCGAGGTGT
65 TCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGT-T
* * * *
66986399 TTCTTTTAGTTTTCAGTTTTTCAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTTGGACC
129 TTCTTTTAATTTTC-GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACA
** *
66986464 ATGCCGAGGTATTTATTTTAAATTTTTGTTTTTCAA
193 ATGCCGAGGTATTTATTTTAAATTTCCGCTTTTCAA
* * *
66986500 AAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACGCCGAGGTA--TTTTTCAATTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTATTTTTTTAAATTT
* * * * *
66986563 CTATTTTTCAAAAATCAACTCATACTGC-AAAGGGTGAGTTGAGCCTACAGTCGCATGCCGAGGT
66 CTGTTTTTCAAAAATCAACTCATATTGCGAGA-GGTGAGTTGAGCCT-CGGAC-CATGCCGAGGT
* *
66986627 ATTCTTTTCAAATTTT-GTTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
128 TTTCTTTT--AATTTTCGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
66986690 GTCGCACGCC
Statistics
Matches: 559, Mismatches: 69, Indels: 53
0.82 0.10 0.08
Matches are distributed among these distances:
226 17 0.03
227 40 0.07
228 57 0.10
229 55 0.10
230 11 0.02
231 181 0.32
232 37 0.07
233 43 0.08
234 36 0.06
235 73 0.13
236 8 0.01
237 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (228 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTATTTTTTTAAATTT
CTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTTTT
CTTTTAATTTTCGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACAATG
CCGAGGTATTTATTTTAAATTTCCGCTTTTCAA
Found at i:66986919 original size:30 final size:29
Alignment explanation
Indices: 66986888--66987013 Score: 148
Period size: 30 Copynumber: 4.2 Consensus size: 29
66986878 TTTATTTTTG
*
66986888 CATTTTGACCCCTAAACTTTTCTAAAATTG
1 CATTTTGACCCCTAAAC-TTTCTAAAATTA
66986918 CATTTTGACCCCTAAACTTTCTTAAAATTA
1 CATTTTGACCCCTAAACTTTC-TAAAATTA
*
66986948 CATTTCT-ACCCCTAAAATTTTCT-AAATTA
1 CATTT-TGACCCCT-AAACTTTCTAAAATTA
* * *
66986977 CATTTGGGCCCTTAAACTTTCTATAAATTA
1 CATTTTGACCCCTAAACTTTCTA-AAATTA
66987007 CATTTTG
1 CATTTTG
66987014 GTACCATATT
Statistics
Matches: 83, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
28 8 0.10
29 19 0.23
30 48 0.58
31 8 0.10
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (29 bp):
CATTTTGACCCCTAAACTTTCTAAAATTA
Found at i:66987005 original size:59 final size:60
Alignment explanation
Indices: 66986895--66987011 Score: 166
Period size: 59 Copynumber: 2.0 Consensus size: 60
66986885 TTGCATTTTG
* * *
66986895 ACCCCTAAACTTTTCTAAAATTGCATTTTGACCCCTAAACTTTCTTAAAATTACATTTCT
1 ACCCCTAAAATTTTCTAAAATTACATTTGGACCCCTAAACTTTCTTAAAATTACATTTCT
* *
66986955 ACCCCTAAAATTTTCT-AAATTACATTTGGGCCCTTAAACTTTC-TATAAATTACATTT
1 ACCCCTAAAATTTTCTAAAATTACATTTGGACCCCTAAACTTTCTTA-AAATTACATTT
66987012 TGGTACCATA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
58 2 0.04
59 34 0.67
60 15 0.29
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.40
Consensus pattern (60 bp):
ACCCCTAAAATTTTCTAAAATTACATTTGGACCCCTAAACTTTCTTAAAATTACATTTCT
Found at i:66987287 original size:12 final size:11
Alignment explanation
Indices: 66987260--66987294 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
66987250 AATAAATTTT
66987260 GAGCAAAAAAA
1 GAGCAAAAAAA
*
66987271 GAGCAAAAACA
1 GAGCAAAAAAA
66987282 GCAGCAAAAAAA
1 G-AGCAAAAAAA
66987294 G
1 G
66987295 GCATACCGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.66, C:0.14, G:0.20, T:0.00
Consensus pattern (11 bp):
GAGCAAAAAAA
Done.