Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 203 of 210
Found at i:67647829 original size:9 final size:9
Alignment explanation
Indices: 67647815--67647869 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
67647805 AGTTTATTTT
67647815 ATTTTTATA
1 ATTTTTATA
67647824 ATTTTTATA
1 ATTTTTATA
*
67647833 AGTTTATATCA
1 A-TTTTTAT-A
*
67647844 ATTTTAAT-
1 ATTTTTATA
*
67647852 ATTTTT-TT
1 ATTTTTATA
67647860 ATTTTTATA
1 ATTTTTATA
67647869 A
1 A
67647870 AATTTTAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
7 1 0.03
8 11 0.30
9 12 0.32
10 11 0.30
11 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
ATTTTTATA
Found at i:67647886 original size:21 final size:22
Alignment explanation
Indices: 67647861--67647907 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
67647851 TATTTTTTTA
*
67647861 TTTTTAT-AAAATTTTAATACG
1 TTTTTATAAAAATTTAAATACG
*
67647882 TTTTTATAAAAATTTAAATATG
1 TTTTTATAAAAATTTAAATACG
67647904 TTTT
1 TTTT
67647908 ATTAATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (22 bp):
TTTTTATAAAAATTTAAATACG
Found at i:67647902 original size:49 final size:48
Alignment explanation
Indices: 67647811--67647922 Score: 113
Period size: 49 Copynumber: 2.3 Consensus size: 48
67647801 TTCAAGTTTA
* ** *
67647811 TTTTATTTTTAT--AATTTTTATAAGTTTATATCAATTTTAATAT-TT
1 TTTTATTTTTATAAAATTTTAATAAGTTTATAAAAATTTAAATATGTT
*
67647856 TTTTATTTTTATAAAATTTTAATACGTTTTTATAAAAATTTAAATATGTT
1 TTTTATTTTTATAAAATTTTAATAAG--TTTATAAAAATTTAAATATGTT
* *
67647906 TTATTAATTATATAAAA
1 TT-TTATTTTTATAAAA
67647923 AATTATAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
45 12 0.22
47 10 0.19
49 16 0.30
50 4 0.07
51 12 0.22
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.58
Consensus pattern (48 bp):
TTTTATTTTTATAAAATTTTAATAAGTTTATAAAAATTTAAATATGTT
Found at i:67649112 original size:30 final size:30
Alignment explanation
Indices: 67649076--67649144 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
67649066 AGATGTGCAC
* *
67649076 GGCAACCCCATTCCACTT-ACTGACGAGCAT
1 GGCAACCCCATT-CAATTGACTGACGAACAT
*
67649106 GGCAACCCCGTTCAATTGACTGACGAACAT
1 GGCAACCCCATTCAATTGACTGACGAACAT
*
67649136 GGTAACCCC
1 GGCAACCCC
67649145 GTTTACGTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 4 0.12
30 30 0.88
ACGTcount: A:0.28, C:0.35, G:0.19, T:0.19
Consensus pattern (30 bp):
GGCAACCCCATTCAATTGACTGACGAACAT
Found at i:67651695 original size:30 final size:30
Alignment explanation
Indices: 67651659--67651727 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
67651649 AGATGTGCAC
* *
67651659 GGCAACCCCATTCCACTT-ACTGACGAGCAT
1 GGCAACCCCATT-CAATTGACTGACGAACAT
*
67651689 GGCAACCCCGTTCAATTGACTGACGAACAT
1 GGCAACCCCATTCAATTGACTGACGAACAT
*
67651719 GGTAACCCC
1 GGCAACCCC
67651728 GTTTACGTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 4 0.12
30 30 0.88
ACGTcount: A:0.28, C:0.35, G:0.19, T:0.19
Consensus pattern (30 bp):
GGCAACCCCATTCAATTGACTGACGAACAT
Found at i:67657914 original size:29 final size:30
Alignment explanation
Indices: 67657860--67658011 Score: 148
Period size: 30 Copynumber: 5.1 Consensus size: 30
67657850 TTAAATTTTT
* *
67657860 TTACATTTTGACCCCTAATCTTT-TCTAAAA
1 TTACATTTTGACCCTTAAACTTTCTC-AAAA
* *
67657890 TTACCTTTTGACCCTTAAACTTTCTCTAAA
1 TTACATTTTGACCCTTAAACTTTCTCAAAA
* *
67657920 TTACATTTTAACCCTTGAAA-TTT-TCTAAA
1 TTACATTTTGACCCTT-AAACTTTCTCAAAA
* * *
67657949 TTACATTTTAACCCCTGAACTTTCTCAAAA
1 TTACATTTTGACCCTTAAACTTTCTCAAAA
* * * *
67657979 TTATATTTTGACCCTGACATTTTCTCAAAA
1 TTACATTTTGACCCTTAAACTTTCTCAAAA
67658009 TTA
1 TTA
67658012 TGTTTCAGCC
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
28 2 0.02
29 24 0.24
30 71 0.70
31 5 0.05
ACGTcount: A:0.31, C:0.22, G:0.04, T:0.43
Consensus pattern (30 bp):
TTACATTTTGACCCTTAAACTTTCTCAAAA
Found at i:67657980 original size:59 final size:59
Alignment explanation
Indices: 67657880--67658011 Score: 167
Period size: 59 Copynumber: 2.2 Consensus size: 59
67657870 ACCCCTAATC
* * * *
67657880 TTTTCTAAAATTACCTTTTGACCCTTAAACTTTCTCTAAATTACATTTTAACCCTTGAAA
1 TTTTCTAAAATTACATTTTAACCCCTAAACTTTCTCAAAATTACATTTTAACCC-TGAAA
* * * *
67657940 TTTTCT-AAATTACATTTTAACCCCTGAACTTTCTCAAAATTATATTTTGACCCTGACA
1 TTTTCTAAAATTACATTTTAACCCCTAAACTTTCTCAAAATTACATTTTAACCCTGAAA
67657998 TTTTCTCAAAATTA
1 TTTTCT-AAAATTA
67658012 TGTTTCAGCC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 10 0.16
59 40 0.65
60 12 0.19
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (59 bp):
TTTTCTAAAATTACATTTTAACCCCTAAACTTTCTCAAAATTACATTTTAACCCTGAAA
Found at i:67658335 original size:19 final size:19
Alignment explanation
Indices: 67658313--67658353 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
67658303 AATAAAAACC
67658313 AAAGCAA-AAAGAAAAAGAA
1 AAAGCAACAAAGAAAAA-AA
67658332 AAAGCAAGCAAAGAAAAAAA
1 AAAGCAA-CAAAGAAAAAAA
67658352 AA
1 AA
67658354 TTTCAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 4 0.20
21 9 0.45
ACGTcount: A:0.78, C:0.07, G:0.15, T:0.00
Consensus pattern (19 bp):
AAAGCAACAAAGAAAAAAA
Found at i:67658503 original size:3 final size:3
Alignment explanation
Indices: 67658495--67658549 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
67658485 GGGGGCTGAT
*
67658495 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGT
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
67658543 AGA AGA A
1 AGA AGA A
67658550 AAAAAATTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:67658848 original size:6 final size:6
Alignment explanation
Indices: 67658835--67658896 Score: 53
Period size: 6 Copynumber: 10.5 Consensus size: 6
67658825 GAAGAGAAAG
67658835 AAAG-A AAAGAA AAA-AA AAAG-- AAAGAA AAAGAA AAAGTGAA GCAAA-AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAA--GAA --AAAGAA
67658882 AAAGAA AAAGAA AAA
1 AAAGAA AAAGAA AAA
67658897 AGGGGGTTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 17
0.74 0.00 0.26
Matches are distributed among these distances:
4 4 0.08
5 12 0.25
6 24 0.50
7 2 0.04
8 3 0.06
10 3 0.06
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:67658865 original size:21 final size:21
Alignment explanation
Indices: 67658831--67658896 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
67658821 AAAAGAAGAG
67658831 AAAGAAAG-AAAAGAAAAAAA
1 AAAGAAAGAAAAAGAAAAAAA
**
67658851 AAAGAAAGAAAAAGAAAAAGT
1 AAAGAAAGAAAAAGAAAAAAA
*
67658872 GAAGCAAA-AAAAAGAAAAAGAA
1 AAAG-AAAGAAAAAGAAAAA-AA
67658894 AAA
1 AAA
67658897 AGGGGGTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
20 8 0.22
21 24 0.65
22 5 0.14
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.02
Consensus pattern (21 bp):
AAAGAAAGAAAAAGAAAAAAA
Found at i:67658869 original size:27 final size:28
Alignment explanation
Indices: 67658820--67658896 Score: 79
Period size: 27 Copynumber: 2.8 Consensus size: 28
67658810 CAACAGGCCG
67658820 AAAAAGAAGAGAAAGAA-AGAAAAG-AAAAA
1 AAAAAGAA-AGAAA-AAGA-AAAAGTAAAAA
* **
67658849 AAAAAGAAAGAAAAAGAAAAAGTGAAGC
1 AAAAAGAAAGAAAAAGAAAAAGTAAAAA
67658877 AAAAA-AAAGAAAAAGAAAAA
1 AAAAAGAAAGAAAAAGAAAAA
67658897 AGGGGGTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
27 22 0.51
28 13 0.30
29 8 0.19
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.01
Consensus pattern (28 bp):
AAAAAGAAAGAAAAAGAAAAAGTAAAAA
Found at i:67658897 original size:15 final size:15
Alignment explanation
Indices: 67658819--67658896 Score: 61
Period size: 15 Copynumber: 5.0 Consensus size: 15
67658809 CCAACAGGCC
* *
67658819 GAAAAAGAAGAGAAA
1 GAAAAAAAAGAAAAA
*
67658834 GAAAGAAAAGAAAAA
1 GAAAAAAAAGAAAAA
67658849 -AAAAAGAAAGAAAAA
1 GAAAAA-AAAGAAAAA
*
67658864 GAAAAAGTGAAGCAAAAA
1 GAAAAA--AAAG-AAAAA
67658882 -AAAGAAAAAGAAAAA
1 GAAA-AAAAAGAAAAA
67658897 AGGGGGTTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
14 4 0.08
15 26 0.51
16 8 0.16
17 6 0.12
18 7 0.14
ACGTcount: A:0.78, C:0.01, G:0.19, T:0.01
Consensus pattern (15 bp):
GAAAAAAAAGAAAAA
Found at i:67659087 original size:28 final size:28
Alignment explanation
Indices: 67659047--67659104 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
67659037 ATATTTTTGT
*
67659047 ATTTATATTTTAAATTTAATTTAATTTCA
1 ATTTATATTTTAAATTTAA-ATAATTTCA
67659076 ATTT-TATTTTAAATTTAAATAATTTCA
1 ATTTATATTTTAAATTTAAATAATTTCA
67659103 AT
1 AT
67659105 AAATAAGGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 10 0.36
28 14 0.50
29 4 0.14
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (28 bp):
ATTTATATTTTAAATTTAAATAATTTCA
Found at i:67659404 original size:35 final size:34
Alignment explanation
Indices: 67659359--67659456 Score: 119
Period size: 37 Copynumber: 2.8 Consensus size: 34
67659349 AATACGGTAC
*
67659359 TTCTTAAAAAAATCTCGTGTTTCAAAATT-TTCGTG
1 TTCTTAAAAAAAT-TCGTGTTTCAAAATTCTT-GTA
67659394 TTCTTTAAAAAAAATTCGTGTTTCTAAAATTCTTGTA
1 TTC-TT-AAAAAAATTCGTGTTTC-AAAATTCTTGTA
67659431 TT-TTAAAAAAATTCGTGTTTTCAAAA
1 TTCTTAAAAAAATTCGTG-TTTCAAAA
67659457 AAAGAAAAAG
Statistics
Matches: 57, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
34 17 0.30
35 9 0.16
36 11 0.19
37 18 0.32
38 2 0.04
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (34 bp):
TTCTTAAAAAAATTCGTGTTTCAAAATTCTTGTA
Found at i:67659413 original size:36 final size:33
Alignment explanation
Indices: 67659362--67659456 Score: 111
Period size: 34 Copynumber: 2.7 Consensus size: 33
67659352 ACGGTACTTC
*
67659362 TTAAAAAAATCTCGTGTTTCAAAATT-TTCGTGTTCT
1 TTAAAAAAAT-TCGTGTTTCAAAATTCTT-GT-AT-T
67659398 TTAAAAAAAATTCGTGTTTCTAAAATTCTTGTATT
1 TT-AAAAAAATTCGTGTTTC-AAAATTCTTGTATT
67659433 TTAAAAAAATTCGTGTTTTCAAAA
1 TTAAAAAAATTCGTG-TTTCAAAA
67659457 AAAGAAAAAG
Statistics
Matches: 54, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
34 17 0.31
35 7 0.13
36 12 0.22
37 16 0.30
38 2 0.04
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (33 bp):
TTAAAAAAATTCGTGTTTCAAAATTCTTGTATT
Found at i:67659441 original size:19 final size:18
Alignment explanation
Indices: 67659364--67659459 Score: 67
Period size: 19 Copynumber: 5.4 Consensus size: 18
67659354 GGTACTTCTT
67659364 AAAAAAATCTCGTG-TTTC
1 AAAAAAAT-TCGTGTTTTC
** *
67659382 -AAAATTTTCGTGTTCTTTA
1 AAAAAAATTCGTG-T-TTTC
67659401 AAAAAAATTCGTG-TTTC
1 AAAAAAATTCGTGTTTTC
* * *
67659418 --TAAAATTCTTGTATTTT
1 AAAAAAATTCGTGT-TTTC
67659435 AAAAAAATTCGTGTTTTC
1 AAAAAAATTCGTGTTTTC
67659453 AAAAAAA
1 AAAAAAA
67659460 GAAAAAGTTG
Statistics
Matches: 58, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
15 9 0.16
16 5 0.09
17 11 0.19
18 10 0.17
19 13 0.22
20 10 0.17
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (18 bp):
AAAAAAATTCGTGTTTTC
Found at i:67664576 original size:43 final size:43
Alignment explanation
Indices: 67664528--67664649 Score: 158
Period size: 43 Copynumber: 2.8 Consensus size: 43
67664518 TTTTAGAAAT
67664528 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTCTCCCAC
* * * * *
67664571 AAACGCCGCT-ATAGATCATGACTTTTAGCTGCGCTTTTCCTAC
1 AAACGCCGCTAAAAG-TCATGACCTTTAGCGGCGCTTCTCCCAC
*
67664614 AAACGCCGCTAAAGAAT-ATGACCTTTAGCGGCGCTT
1 AAACGCCGCTAAA-AGTCATGACCTTTAGCGGCGCTT
67664650 GTTGGCTAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 3 0.04
43 61 0.91
44 2 0.03
45 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTCTCCCAC
Found at i:67674437 original size:30 final size:30
Alignment explanation
Indices: 67674402--67674460 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
67674392 CCGCCATTAG
*
67674402 GAAAGTTCCTCTAAACTACTGGAAATAAAA
1 GAAAGTTCCTCTAAACTACAGGAAATAAAA
*
67674432 GAAAGTTCCTCTAAAGTACAGGAAATAAA
1 GAAAGTTCCTCTAAACTACAGGAAATAAA
67674461 CGGTTCAGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.22
Consensus pattern (30 bp):
GAAAGTTCCTCTAAACTACAGGAAATAAAA
Found at i:67678047 original size:25 final size:25
Alignment explanation
Indices: 67678013--67678097 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 25
67678003 AGCATGTAAT
67678013 CGGGAAGCTC-TTTCAAGCCATATAA
1 CGGGAAGCTCATTT-AAGCCATATAA
* * *
67678038 CGGGAAGCTCATTTGAGCTATGTAA
1 CGGGAAGCTCATTTAAGCCATATAA
* * *
67678063 CGGGAAGCTCATGTGAGCCATGTAA
1 CGGGAAGCTCATTTAAGCCATATAA
**
67678088 CTAGAAGCTC
1 CGGGAAGCTC
67678098 CGGAGAGCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
25 49 0.94
26 3 0.06
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (25 bp):
CGGGAAGCTCATTTAAGCCATATAA
Found at i:67678082 original size:50 final size:50
Alignment explanation
Indices: 67678002--67678097 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 50
67677992 TATGCCATAC
* *
67678002 GAGCATGTAATCGGGAAGCTCTTTCAAGCCATATAACGGGAAGCTCATTT
1 GAGCATGTAATCGGGAAGCTCTGTCAAGCCATATAACGAGAAGCTCATTT
* * *
67678052 GAGCTATGTAA-CGGGAAGCTCATGT-GAGCCATGTAACTAGAAGCTC
1 GAGC-ATGTAATCGGGAAGCTC-TGTCAAGCCATATAACGAGAAGCTC
67678098 CGGAGAGCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
50 31 0.79
51 8 0.21
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (50 bp):
GAGCATGTAATCGGGAAGCTCTGTCAAGCCATATAACGAGAAGCTCATTT
Found at i:67678118 original size:24 final size:24
Alignment explanation
Indices: 67678028--67678232 Score: 99
Period size: 25 Copynumber: 8.4 Consensus size: 24
67678018 AGCTCTTTCA
***
67678028 AGCCATATAACGGGAAGCTCATTTG
1 AGCCAT-TAACGGGAAGCTCAGGAG
* * *
67678053 AGCTATGTAACGGGAAGCTCATGTG
1 AGCCAT-TAACGGGAAGCTCAGGAG
** *
67678078 AGCCATGTAACTAGAAGCTCCGGAG
1 AGCCAT-TAACGGGAAGCTCAGGAG
* *
67678103 AGCCATTAACGGGAAGTTCAAGTA-
1 AGCCATTAACGGGAAGCTC-AGGAG
* * *
67678127 AGCCAATATCGAGAAGCTC-GGAG
1 AGCCATTAACGGGAAGCTCAGGAG
* * **
67678150 AGCCATTAACAGGAATCTCATAAG
1 AGCCATTAACGGGAAGCTCAGGAG
* * * *
67678174 AGCCATTTATCGAGAAGCTCCGAAG
1 AGCCA-TTAACGGGAAGCTCAGGAG
* ** **
67678199 AGCAACAAACGGGAAGCTCAAAAAG
1 AGCCATTAACGGGAAGCTC-AGGAG
67678224 AGCCATTAA
1 AGCCATTAA
67678233 TCAAGAAGCT
Statistics
Matches: 133, Mismatches: 42, Indels: 10
0.72 0.23 0.05
Matches are distributed among these distances:
22 2 0.02
23 14 0.11
24 42 0.32
25 75 0.56
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (24 bp):
AGCCATTAACGGGAAGCTCAGGAG
Found at i:67678131 original size:49 final size:47
Alignment explanation
Indices: 67678060--67678169 Score: 130
Period size: 47 Copynumber: 2.3 Consensus size: 47
67678050 TTGAGCTATG
* * * *
67678060 TAACGGGAAGCTCATGTGAGCCATGTAACTAGAAGCTCCGGAGAGCCAT
1 TAACGGGAAGCTCAAGTAAGCCA-ATAACGAGAAGCT-CGGAGAGCCAT
* *
67678109 TAACGGGAAGTTCAAGTAAGCCAATATCGAGAAGCTCGGAGAGCCAT
1 TAACGGGAAGCTCAAGTAAGCCAATAACGAGAAGCTCGGAGAGCCAT
* *
67678156 TAACAGGAATCTCA
1 TAACGGGAAGCTCA
67678170 TAAGAGCCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 22 0.42
48 10 0.19
49 20 0.38
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18
Consensus pattern (47 bp):
TAACGGGAAGCTCAAGTAAGCCAATAACGAGAAGCTCGGAGAGCCAT
Found at i:67678178 original size:47 final size:47
Alignment explanation
Indices: 67678090--67678193 Score: 124
Period size: 47 Copynumber: 2.2 Consensus size: 47
67678080 CCATGTAACT
*
67678090 AGAAGCTCCGGAGAGCCATTAACGGGAAGTTCAAGTAAGCCA-ATATCG
1 AGAAGCT-CGGAGAGCCATTAACAGGAAGTTCAAG-AAGCCATATATCG
*
67678138 AGAAGCTCGGAGAGCCATTAACAGGAA-TCTCATA-AGAGCCATTTATCG
1 AGAAGCTCGGAGAGCCATTAACAGGAAGT-TCA-AGA-AGCCATATATCG
67678186 AGAAGCTC
1 AGAAGCTC
67678194 CGAAGAGCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
46 2 0.04
47 27 0.54
48 21 0.42
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (47 bp):
AGAAGCTCGGAGAGCCATTAACAGGAAGTTCAAGAAGCCATATATCG
Found at i:67685149 original size:18 final size:19
Alignment explanation
Indices: 67685110--67685150 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
67685100 AATTACAAAA
*
67685110 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTAT
67685129 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTAT
67685147 AAAA
1 AAAA
67685151 AAATCCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:67686381 original size:40 final size:40
Alignment explanation
Indices: 67686337--67686422 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
67686327 ACGACTAATG
* * * ** *
67686337 TTTTTATTAGTTTATTGCATATAAATTGTTGAAATATTAA
1 TTTTTATTAATTCATTGCAGATAAATAATTAAAATATTAA
*
67686377 TTTTTCTTAATTCATTGCAGATAAATAATTAAAATATTAA
1 TTTTTATTAATTCATTGCAGATAAATAATTAAAATATTAA
67686417 TTTTTA
1 TTTTTA
67686423 ACAATAAGGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (40 bp):
TTTTTATTAATTCATTGCAGATAAATAATTAAAATATTAA
Found at i:67689432 original size:3 final size:3
Alignment explanation
Indices: 67689414--67689456 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
67689404 GTTGTCTTCT
* *
67689414 TTA TTG TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
67689457 ATTTGGCAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:67689562 original size:3 final size:3
Alignment explanation
Indices: 67689550--67689605 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
67689540 TTCTTTTTAG
*
67689550 TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
67689598 TTA TTA TT
1 TTA TTA TT
67689606 TGCTTTCTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:67689568 original size:130 final size:131
Alignment explanation
Indices: 67689323--67689586 Score: 496
Period size: 130 Copynumber: 2.0 Consensus size: 131
67689313 GGTCTGGGAG
67689323 ATATTTGGCAGGAGATGTCAATGGCATTAGAATTCTCCAAGGTGTTTTATACTGCTCTTGAAATT
1 ATATTTGGCA-GAGATGTCAATGGCATTAGAATTCTCCAAGGTGTTTTATACTGCTCTTGAAATT
67689388 TAATTGGTGGATATTTGTTGTCTTCTTTATTGTTATTGTTATTATTATTATTATTATTATTATTA
65 TAATTGGTGGATATTTGTTGTCTTCTTTATTGTTATTGTTATTATTATTATTATTATTATTATTA
67689453 TT
130 TT
67689455 ATATTTGGCA-AGATGTCAATGGCATTAGAATTCTCCAAGGTGTTTTATACTGCTCTTGAAATTT
1 ATATTTGGCAGAGATGTCAATGGCATTAGAATTCTCCAAGGTGTTTTATACTGCTCTTGAAATTT
67689519 AATTGGTGGATATTTGTTGTCTTCTTT-TTAGTTATTGTTATTATTATTATTATTATTATTATTA
66 AATTGGTGGATATTTGTTGTCTTCTTTATT-GTTATTGTTATTATTATTATTATTATTATTATTA
67689583 TT
130 TT
67689585 AT
1 AT
67689587 TATTATTATT
Statistics
Matches: 131, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
129 2 0.02
130 119 0.91
132 10 0.08
ACGTcount: A:0.25, C:0.08, G:0.16, T:0.50
Consensus pattern (131 bp):
ATATTTGGCAGAGATGTCAATGGCATTAGAATTCTCCAAGGTGTTTTATACTGCTCTTGAAATTT
AATTGGTGGATATTTGTTGTCTTCTTTATTGTTATTGTTATTATTATTATTATTATTATTATTAT
T
Found at i:67700875 original size:9 final size:9
Alignment explanation
Indices: 67700861--67700962 Score: 55
Period size: 9 Copynumber: 10.8 Consensus size: 9
67700851 TATTTTTCTC
67700861 ATAAAAAAT
1 ATAAAAAAT
67700870 ATAAAAAA-
1 ATAAAAAAT
*
67700878 ATTAAATAAAA
1 A-TAAA-AAAT
*
67700889 ATTAAAAAT
1 ATAAAAAAT
**
67700898 GGATATAAACTT
1 --ATA-AAAAAT
* *
67700910 ATTAAAATT
1 ATAAAAAAT
*
67700919 ATAAAAATT
1 ATAAAAAAT
67700928 ATAAAAAAT
1 ATAAAAAAT
*
67700937 TTATAAAAAT
1 ATA-AAAAAT
67700947 -TATAAAAAT
1 ATA-AAAAAT
67700956 ATAAAAA
1 ATAAAAA
67700963 CCTAATAAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
8 1 0.01
9 51 0.68
10 16 0.21
11 3 0.04
12 4 0.05
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAAAAAAT
Found at i:67700923 original size:29 final size:27
Alignment explanation
Indices: 67700913--67700979 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 27
67700903 TAAACTTATT
* *
67700913 AAAATTATAAAAATTATAAAAAATTTATA
1 AAAATTATAAAAA-TAT-AAAAACTTATT
* *
67700942 AAAATTATAAAAATATAAAAACCTAAT
1 AAAATTATAAAAATATAAAAACTTATT
67700969 -AAATTATAAAA
1 AAAATTATAAAA
67700980 TTAATAACGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.32
27 7 0.21
28 3 0.09
29 13 0.38
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (27 bp):
AAAATTATAAAAATATAAAAACTTATT
Found at i:67700942 original size:20 final size:19
Alignment explanation
Indices: 67700913--67700962 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 19
67700903 TAAACTTATT
67700913 AAAATTATAAAAATTATAA
1 AAAATTATAAAAATTATAA
67700932 AAAATTTATAAAAATTAT-A
1 AAAA-TTATAAAAATTATAA
67700951 AAAA-TATAAAAA
1 AAAATTATAAAAA
67700963 CCTAATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.27
19 9 0.30
20 13 0.43
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATTATAAAAATTATAA
Found at i:67701073 original size:29 final size:30
Alignment explanation
Indices: 67700996--67701074 Score: 72
Period size: 31 Copynumber: 2.7 Consensus size: 30
67700986 ACGCTTACTT
* *
67700996 AAAATATTTAAAATTAAAAAATGTATTACA
1 AAAATATTAAAAATTAAAAAATGTAGTACA
** * *
67701026 ATTATTTTAAAAAAATAAAAAAT-T-GTACA
1 AAAATATT-AAAAATTAAAAAATGTAGTACA
*
67701055 AAAATATTAAAAATTTAAAA
1 AAAATATTAAAAATTAAAAA
67701075 GTATTAAAAT
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
28 10 0.27
29 9 0.24
30 6 0.16
31 12 0.32
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (30 bp):
AAAATATTAAAAATTAAAAAATGTAGTACA
Found at i:67701671 original size:9 final size:9
Alignment explanation
Indices: 67701624--67701786 Score: 82
Period size: 9 Copynumber: 17.6 Consensus size: 9
67701614 TTCTTAACTT
*
67701624 TTTTTAGAA
1 TTTTTATAA
67701633 CTTTTTATAA
1 -TTTTTATAA
**
67701643 TTTATTA-GG
1 TTT-TTATAA
67701652 TTTTTAT-A
1 TTTTTATAA
67701660 TTTTTATAA
1 TTTTTATAA
67701669 TTTTTATAA
1 TTTTTATAA
*
67701678 GTTTATATCAA
1 -TTTTTAT-AA
* **
67701689 TTTTCATGC
1 TTTTTATAA
*
67701698 TTTTTTTAA
1 TTTTTATAA
*
67701707 TATTTAATAA
1 T-TTTTATAA
67701717 TTTTTAT-A
1 TTTTTATAA
*
67701725 TTATTGAT-A
1 TT-TTTATAA
* *
67701734 TTTTTTTTA
1 TTTTTATAA
67701743 TTTTTATAA
1 TTTTTATAA
* *
67701752 TATTTTCTTATT
1 T-TTTT-ATA-A
67701764 TTTTTATAA
1 TTTTTATAA
*
67701773 TTTTTATGA
1 TTTTTATAA
67701782 TTTTT
1 TTTTT
67701787 TATTCTTTTT
Statistics
Matches: 116, Mismatches: 26, Indels: 23
0.70 0.16 0.14
Matches are distributed among these distances:
8 16 0.14
9 56 0.48
10 35 0.30
11 8 0.07
12 1 0.01
ACGTcount: A:0.27, C:0.03, G:0.04, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:67701776 original size:30 final size:28
Alignment explanation
Indices: 67701716--67701797 Score: 78
Period size: 30 Copynumber: 2.9 Consensus size: 28
67701706 ATATTTAATA
* *
67701716 ATTTTTATATTA-TTGA-TATTTTTTTT
1 ATTTTTATAATATTTTATTATTTTTTTT
*
67701742 ATTTTTATAATATTTTCTTATTTTTTTAT
1 ATTTTTATAATATTTTATTATTTTTTT-T
* * *
67701771 AATTTTTATGATTTTTTATTCTTTTTT
1 -ATTTTTATAATATTTTATTATTTTTT
67701798 ATGGGAAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 11 0.24
27 2 0.04
28 9 0.20
29 1 0.02
30 22 0.49
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (28 bp):
ATTTTTATAATATTTTATTATTTTTTTT
Found at i:67705597 original size:41 final size:41
Alignment explanation
Indices: 67705540--67705620 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
67705530 TAGAGAATTG
67705540 AAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCTTTT
1 AAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCTTTT
67705581 AAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCTTT
1 AAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCTTT
67705621 AGTACAAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (41 bp):
AAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCTTTT
Found at i:67710250 original size:13 final size:13
Alignment explanation
Indices: 67710232--67710264 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
67710222 TAATTTTGGT
*
67710232 GCCACACAGTCTG
1 GCCACACAGTCTA
67710245 GCCACACAGTCTA
1 GCCACACAGTCTA
67710258 GCCACAC
1 GCCACAC
67710265 GGTCGTATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.27, C:0.42, G:0.18, T:0.12
Consensus pattern (13 bp):
GCCACACAGTCTA
Found at i:67721379 original size:3 final size:3
Alignment explanation
Indices: 67721371--67721413 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
67721361 CCCTGTTTCT
67721371 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
67721414 ATCTTAATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:67733394 original size:16 final size:16
Alignment explanation
Indices: 67733357--67733396 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
67733347 TTAATAAAAT
* *
67733357 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
67733373 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
67733389 TAAAATTA
1 TAAAATTA
67733397 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:67733396 original size:22 final size:22
Alignment explanation
Indices: 67733329--67733381 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
67733319 TAATTAAAAT
* * *
67733329 TAAAATTAAAATTATTTTTTAA
1 TAAAATTAAAACTAATTGTTAA
*
67733351 TAAAATTAAAACTAATTGTTAT
1 TAAAATTAAAACTAATTGTTAA
67733373 TAAAATTAA
1 TAAAATTAA
67733382 TTGTTAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
TAAAATTAAAACTAATTGTTAA
Found at i:67734042 original size:20 final size:22
Alignment explanation
Indices: 67734019--67734058 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
67734009 TAAAAAATAT
67734019 ATTAAAAT-AT-TAAATATTAA
1 ATTAAAATAATATAAATATTAA
67734039 ATTAAAATAATATAAATATT
1 ATTAAAATAATATAAATATT
67734059 TTAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 2 0.11
22 8 0.44
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTAAAATAATATAAATATTAA
Found at i:67745717 original size:16 final size:16
Alignment explanation
Indices: 67745696--67745764 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
67745686 TTTGGTTCGC
67745696 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
67745712 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
67745728 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
67745745 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
67745761 TGTA
1 TGTA
67745765 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:67745742 original size:33 final size:32
Alignment explanation
Indices: 67745696--67745764 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
67745686 TTTGGTTCGC
67745696 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
67745728 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
67745761 TGTA
1 TGTA
67745765 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:67745829 original size:44 final size:45
Alignment explanation
Indices: 67745745--67745835 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
67745735 GGATTAGAGG
* * *
67745745 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
67745790 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
67745834 TG
1 TG
67745836 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:67747171 original size:7 final size:7
Alignment explanation
Indices: 67747161--67747692 Score: 1064
Period size: 7 Copynumber: 76.0 Consensus size: 7
67747151 GAAATTCGAA
67747161 ACTTGAT
1 ACTTGAT
67747168 ACTTGAT
1 ACTTGAT
67747175 ACTTGAT
1 ACTTGAT
67747182 ACTTGAT
1 ACTTGAT
67747189 ACTTGAT
1 ACTTGAT
67747196 ACTTGAT
1 ACTTGAT
67747203 ACTTGAT
1 ACTTGAT
67747210 ACTTGAT
1 ACTTGAT
67747217 ACTTGAT
1 ACTTGAT
67747224 ACTTGAT
1 ACTTGAT
67747231 ACTTGAT
1 ACTTGAT
67747238 ACTTGAT
1 ACTTGAT
67747245 ACTTGAT
1 ACTTGAT
67747252 ACTTGAT
1 ACTTGAT
67747259 ACTTGAT
1 ACTTGAT
67747266 ACTTGAT
1 ACTTGAT
67747273 ACTTGAT
1 ACTTGAT
67747280 ACTTGAT
1 ACTTGAT
67747287 ACTTGAT
1 ACTTGAT
67747294 ACTTGAT
1 ACTTGAT
67747301 ACTTGAT
1 ACTTGAT
67747308 ACTTGAT
1 ACTTGAT
67747315 ACTTGAT
1 ACTTGAT
67747322 ACTTGAT
1 ACTTGAT
67747329 ACTTGAT
1 ACTTGAT
67747336 ACTTGAT
1 ACTTGAT
67747343 ACTTGAT
1 ACTTGAT
67747350 ACTTGAT
1 ACTTGAT
67747357 ACTTGAT
1 ACTTGAT
67747364 ACTTGAT
1 ACTTGAT
67747371 ACTTGAT
1 ACTTGAT
67747378 ACTTGAT
1 ACTTGAT
67747385 ACTTGAT
1 ACTTGAT
67747392 ACTTGAT
1 ACTTGAT
67747399 ACTTGAT
1 ACTTGAT
67747406 ACTTGAT
1 ACTTGAT
67747413 ACTTGAT
1 ACTTGAT
67747420 ACTTGAT
1 ACTTGAT
67747427 ACTTGAT
1 ACTTGAT
67747434 ACTTGAT
1 ACTTGAT
67747441 ACTTGAT
1 ACTTGAT
67747448 ACTTGAT
1 ACTTGAT
67747455 ACTTGAT
1 ACTTGAT
67747462 ACTTGAT
1 ACTTGAT
67747469 ACTTGAT
1 ACTTGAT
67747476 ACTTGAT
1 ACTTGAT
67747483 ACTTGAT
1 ACTTGAT
67747490 ACTTGAT
1 ACTTGAT
67747497 ACTTGAT
1 ACTTGAT
67747504 ACTTGAT
1 ACTTGAT
67747511 ACTTGAT
1 ACTTGAT
67747518 ACTTGAT
1 ACTTGAT
67747525 ACTTGAT
1 ACTTGAT
67747532 ACTTGAT
1 ACTTGAT
67747539 ACTTGAT
1 ACTTGAT
67747546 ACTTGAT
1 ACTTGAT
67747553 ACTTGAT
1 ACTTGAT
67747560 ACTTGAT
1 ACTTGAT
67747567 ACTTGAT
1 ACTTGAT
67747574 ACTTGAT
1 ACTTGAT
67747581 ACTTGAT
1 ACTTGAT
67747588 ACTTGAT
1 ACTTGAT
67747595 ACTTGAT
1 ACTTGAT
67747602 ACTTGAT
1 ACTTGAT
67747609 ACTTGAT
1 ACTTGAT
67747616 ACTTGAT
1 ACTTGAT
67747623 ACTTGAT
1 ACTTGAT
67747630 ACTTGAT
1 ACTTGAT
67747637 ACTTGAT
1 ACTTGAT
67747644 ACTTGAT
1 ACTTGAT
67747651 ACTTGAT
1 ACTTGAT
67747658 ACTTGAT
1 ACTTGAT
67747665 ACTTGAT
1 ACTTGAT
67747672 ACTTGAT
1 ACTTGAT
67747679 ACTTGAT
1 ACTTGAT
67747686 ACTTGAT
1 ACTTGAT
67747693 TTCCACATAT
Statistics
Matches: 525, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 525 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (7 bp):
ACTTGAT
Found at i:67749793 original size:35 final size:36
Alignment explanation
Indices: 67749738--67749806 Score: 90
Period size: 35 Copynumber: 1.9 Consensus size: 36
67749728 TTTCTCATAA
67749738 AAAAACTATAAAAAATTAAAAATCA-TAAAAACTTAA
1 AAAAACTATAAAAAATTAAAAAT-ATTAAAAACTTAA
*
67749774 AAAATA-TATTAAAAA-TAAAAATATTAAAAACTT
1 AAAA-ACTATAAAAAATTAAAAATATTAAAAACTT
67749807 TCTATAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 1 0.03
35 16 0.53
36 12 0.40
37 1 0.03
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (36 bp):
AAAAACTATAAAAAATTAAAAATATTAAAAACTTAA
Found at i:67749799 original size:15 final size:16
Alignment explanation
Indices: 67749774--67749803 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67749764 AAAAACTTAA
67749774 AAAATATATTAAAAAT
1 AAAATATATTAAAAAT
67749790 AAAA-ATATTAAAAA
1 AAAATATATTAAAAA
67749804 CTTTCTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATATATTAAAAAT
Found at i:67749845 original size:22 final size:21
Alignment explanation
Indices: 67749820--67749867 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 21
67749810 ATAAACTTTT
67749820 AAAAATTATAAAAGATTCATA-A
1 AAAAATTAT--AAGATTCATATA
*
67749842 AAAAGTTATAAGATTCATATA
1 AAAAATTATAAGATTCATATA
67749863 AAAAA
1 AAAAA
67749868 AAAGTATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 10 0.43
21 5 0.22
22 8 0.35
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.27
Consensus pattern (21 bp):
AAAAATTATAAGATTCATATA
Found at i:67751793 original size:62 final size:62
Alignment explanation
Indices: 67751696--67751812 Score: 234
Period size: 62 Copynumber: 1.9 Consensus size: 62
67751686 CTGCCTGGAA
67751696 CTCTCCAATACTCCCATAGCTTCTAGAAGAGCATTCATTGTTGCACAATAGAACTCTCCAAT
1 CTCTCCAATACTCCCATAGCTTCTAGAAGAGCATTCATTGTTGCACAATAGAACTCTCCAAT
67751758 CTCTCCAATACTCCCATAGCTTCTAGAAGAGCATTCATTGTTGCACAATAGAACT
1 CTCTCCAATACTCCCATAGCTTCTAGAAGAGCATTCATTGTTGCACAATAGAACT
67751813 GTTCAGAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (62 bp):
CTCTCCAATACTCCCATAGCTTCTAGAAGAGCATTCATTGTTGCACAATAGAACTCTCCAAT
Found at i:67752027 original size:2 final size:2
Alignment explanation
Indices: 67752015--67752050 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
67752005 CCTCCCTCCT
* *
67752015 GA GA GA TA GA GA GA GA GA GA GA TA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
67752051 TTAGTGGAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.44, T:0.06
Consensus pattern (2 bp):
GA
Found at i:67752036 original size:16 final size:16
Alignment explanation
Indices: 67752015--67752050 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
67752005 CCTCCCTCCT
67752015 GAGAGATAGAGAGAGA
1 GAGAGATAGAGAGAGA
67752031 GAGAGATAGAGAGAGA
1 GAGAGATAGAGAGAGA
67752047 GAGA
1 GAGA
67752051 TTAGTGGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.44, T:0.06
Consensus pattern (16 bp):
GAGAGATAGAGAGAGA
Found at i:67754747 original size:8 final size:8
Alignment explanation
Indices: 67754734--67754762 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
67754724 AACAACTACC
67754734 ATATAACT
1 ATATAACT
67754742 ATATAACT
1 ATATAACT
67754750 ATATAACT
1 ATATAACT
67754758 ATATA
1 ATATA
67754763 TATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAACT
Found at i:67754762 original size:2 final size:2
Alignment explanation
Indices: 67754757--67754795 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
67754747 ACTATATAAC
67754757 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67754796 CCAAACAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:67757509 original size:25 final size:25
Alignment explanation
Indices: 67757472--67757527 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
67757462 CATATATGAA
*
67757472 ATAATCTTGTTGTTTAATGTAGT-GG
1 ATAATCTTATTGTTTAATGTA-TAGG
*
67757497 ATAATCTTATTGTTTGATGTATAGG
1 ATAATCTTATTGTTTAATGTATAGG
67757522 ATAATC
1 ATAATC
67757528 ATTTCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.29, C:0.05, G:0.20, T:0.46
Consensus pattern (25 bp):
ATAATCTTATTGTTTAATGTATAGG
Found at i:67760692 original size:17 final size:17
Alignment explanation
Indices: 67760655--67760693 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
67760645 TTATTTGTTC
*
67760655 TATTGTTGGAATTGAAT
1 TATTGTTGGAATTGAAA
67760672 TATTGTTGGAATT-ATAA
1 TATTGTTGGAATTGA-AA
67760689 TATTG
1 TATTG
67760694 AATTGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAATTGAAA
Found at i:67760858 original size:21 final size:20
Alignment explanation
Indices: 67760832--67760939 Score: 94
Period size: 21 Copynumber: 5.3 Consensus size: 20
67760822 GTGTTTTACT
*
67760832 TTCTGTTCAGCTCTTATGAGC
1 TTCTGTTCAGCT-TTACGAGC
* * * *
67760853 TTCTGTTCAACTGTAATGAGT
1 TTCTGTTCAGCT-TTACGAGC
*
67760874 TTCTGTTTAGCTCTTACGAGC
1 TTCTGTTCAGCT-TTACGAGC
*
67760895 TTCTATTCAGCTTT-CGAGC
1 TTCTGTTCAGCTTTACGAGC
* *
67760914 TTCTATTAAGCTTT-CGAGC
1 TTCTGTTCAGCTTTACGAGC
67760933 TTCTGTT
1 TTCTGTT
67760940 GGCATATTCA
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
19 29 0.40
20 2 0.03
21 42 0.58
ACGTcount: A:0.17, C:0.21, G:0.18, T:0.44
Consensus pattern (20 bp):
TTCTGTTCAGCTTTACGAGC
Found at i:67760914 original size:19 final size:19
Alignment explanation
Indices: 67760890--67760936 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
67760880 TTAGCTCTTA
*
67760890 CGAGCTTCTATTCAGCTTT
1 CGAGCTTCTATTAAGCTTT
67760909 CGAGCTTCTATTAAGCTTT
1 CGAGCTTCTATTAAGCTTT
67760928 CGAGCTTCT
1 CGAGCTTCT
67760937 GTTGGCATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (19 bp):
CGAGCTTCTATTAAGCTTT
Found at i:67762886 original size:54 final size:54
Alignment explanation
Indices: 67762808--67762950 Score: 268
Period size: 54 Copynumber: 2.6 Consensus size: 54
67762798 GTTTGTTATT
*
67762808 TATTACAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTGTGAGTTTA
1 TATTACAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTA
*
67762862 TATTACAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTGTATGAGTTTA
1 TATTACAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTA
67762916 TATTACAGGGGATTTAGCCTGGACTGGTAATCCCG
1 TATTACAGGGGATTTAGCCTGGACTGGTAATCCCG
67762951 CTGTAAGGAT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (54 bp):
TATTACAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTA
Found at i:67764017 original size:21 final size:20
Alignment explanation
Indices: 67763989--67764040 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
67763979 ATTAATAGAA
67763989 GTTATGAATGACAGGAAATT
1 GTTATGAATGACAGGAAATT
*
67764009 GTTAGTGAATGACAGGGAATT
1 GTTA-TGAATGACAGGAAATT
**
67764030 GACATGAATGA
1 GTTATGAATGA
67764041 TTTTATTTCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.38, C:0.06, G:0.29, T:0.27
Consensus pattern (20 bp):
GTTATGAATGACAGGAAATT
Found at i:67766268 original size:21 final size:22
Alignment explanation
Indices: 67766240--67766303 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
67766230 CAGAAACAGT
*
67766240 ATACGACACATAAAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
** *
67766262 A-ACGACACACGTGGTGCCT-A
1 ATACGACACATATAGTGCCTGA
67766282 ATACGACACATATAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
67766304 TTGACAAAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
20 2 0.06
21 29 0.88
22 2 0.06
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (22 bp):
ATACGACACATATAGTGCCTGA
Found at i:67768818 original size:96 final size:96
Alignment explanation
Indices: 67768698--67768889 Score: 339
Period size: 96 Copynumber: 2.0 Consensus size: 96
67768688 CTTCACCTTT
* *
67768698 TTCAATTTGGTCCTAATCCATCCATTTTACTTAGTTTCTAGATCATTCCACTCTTAAAATATTTA
1 TTCAATTTGGTCATAATCCATCCATTTTACTTAGTTTCTAGATCATTCCACTCTCAAAATATTTA
* *
67768763 CACCATTGGTCCTTCAACTTTTTCATATTTA
66 CACCATTGGTCCTTCAACATTATCATATTTA
67768794 TTCAATTTGGTCATAATCCATCCATTTTACTTAGTTTCTAGATCATTCCACTCTCAAAATATTTA
1 TTCAATTTGGTCATAATCCATCCATTTTACTTAGTTTCTAGATCATTCCACTCTCAAAATATTTA
*
67768859 CACCATTGGTCCTTTAACATTATCATATTTA
66 CACCATTGGTCCTTCAACATTATCATATTTA
67768890 CACTTTAACC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 91 1.00
ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44
Consensus pattern (96 bp):
TTCAATTTGGTCATAATCCATCCATTTTACTTAGTTTCTAGATCATTCCACTCTCAAAATATTTA
CACCATTGGTCCTTCAACATTATCATATTTA
Found at i:67769219 original size:17 final size:18
Alignment explanation
Indices: 67769185--67769220 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
67769175 TGAACTTTTA
67769185 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
67769203 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
67769220 T
1 T
67769221 AACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:67773149 original size:90 final size:89
Alignment explanation
Indices: 67773037--67773222 Score: 320
Period size: 90 Copynumber: 2.1 Consensus size: 89
67773027 TGAATTTTTT
*
67773037 TAATTTTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTA
1 TAATTTTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTA
67773102 GTGTTTTGTGATTTTTTATGAATG
66 GTGTTTTGTGATTTTTTATGAATG
* *
67773126 TAATTTTTTCAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATCGTTTGTGTTTAGTTT
1 TAATTTTTT-AAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTT
*
67773191 AGTGTTTTGTGATTTGTTATGAATG
65 AGTGTTTTGTGATTTTTTATGAATG
67773216 T-ATTTTT
1 TAATTTTT
67773223 ATATTATTTT
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
89 15 0.16
90 77 0.84
ACGTcount: A:0.24, C:0.01, G:0.17, T:0.58
Consensus pattern (89 bp):
TAATTTTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTA
GTGTTTTGTGATTTTTTATGAATG
Found at i:67773269 original size:97 final size:104
Alignment explanation
Indices: 67773126--67773408 Score: 339
Period size: 114 Copynumber: 2.7 Consensus size: 104
67773116 TTTATGAATG
*
67773126 TAATT-TTTTCAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATCGTTTGTGTTTAGTT
1 TAATTATTTT-AAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTT
*
67773190 TAGTGTTTTGTGA-TTTGT-T-ATG-AA-TG-TATTTTTA
65 TAATGTTTTGTGATTTTGTATAATGAAATTGCTATTTTTA
* * * *
67773224 T-ATTATTTTAAAGTCATTTTGTTAGTAATTTATGGTTAGGTTATAAATTATTTGTATTTAGTTT
1 TAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTT
* *
67773288 AATGTTATTGTGATTTTTTTATAAATGTAAATTTTTTTTGCTTTTTTTA
66 AATGTT-TTGTGA-TTTTGTAT-AATG-AAA------TTGCTATTTTTA
67773337 TAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTT
1 TAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTT
67773402 AATGTTT
66 AATGTTT
67773409 ATTGTGAATT
Statistics
Matches: 155, Mismatches: 12, Indels: 21
0.82 0.06 0.11
Matches are distributed among these distances:
97 58 0.37
98 11 0.07
100 4 0.03
101 1 0.01
103 3 0.02
105 2 0.01
112 2 0.01
113 9 0.06
114 65 0.42
ACGTcount: A:0.26, C:0.01, G:0.15, T:0.58
Consensus pattern (104 bp):
TAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTT
AATGTTTTGTGATTTTGTATAATGAAATTGCTATTTTTA
Found at i:67773357 original size:114 final size:113
Alignment explanation
Indices: 67773218--67773439 Score: 347
Period size: 114 Copynumber: 2.0 Consensus size: 113
67773208 TATGAATGTA
*
67773218 TTTTTATATTATTTTAAAGTCATTTTGTTAGTAATTTATGGTTAGGTTATAAATTATTTGTATTT
1 TTTTTATATTATTTTAAAGTCATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTATTT
* * *
67773283 AGTTTAATG-TTATTGTGATTTTTTTATAAATGTAAATTTTTTTTGCTT
66 AGTTTAATGTTTATTGTGA-ATTGTCATAAATGTAAATTTTTTTTGCTT
* * *
67773331 TTTTTATAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTT
1 TTTTTAT-ATTATTTTAAAGTCATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTATT
*
67773396 TAGTTTAATGTTTATTGTGAATTGTCATAAATGTAAGTTTTTTT
65 TAGTTTAATGTTTATTGTGAATTGTCATAAATGTAAATTTTTTT
67773440 GTATTTTTTT
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
113 7 0.07
114 83 0.84
115 9 0.09
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (113 bp):
TTTTTATATTATTTTAAAGTCATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTATTT
AGTTTAATGTTTATTGTGAATTGTCATAAATGTAAATTTTTTTTGCTT
Found at i:67773788 original size:21 final size:21
Alignment explanation
Indices: 67773762--67773814 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
67773752 CATTGTTTCT
* * *
67773762 AATCTCACTGCTATAGTATCC
1 AATCTCACCGCTACAGTAACC
*
67773783 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
67773804 AATCTCACCGC
1 AATCTCACCGC
67773815 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.26
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:67775200 original size:21 final size:21
Alignment explanation
Indices: 67775174--67775226 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
67775164 CATTGTTTCT
* * *
67775174 AATCTCACTGCTATAGTATCC
1 AATCTCACCGCTACAGTAACC
*
67775195 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
67775216 AATCTCACCGC
1 AATCTCACCGC
67775227 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.26
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:67779687 original size:54 final size:54
Alignment explanation
Indices: 67779539--67779689 Score: 143
Period size: 54 Copynumber: 2.9 Consensus size: 54
67779529 AACTAATAAT
* * * *
67779539 TAATTTATAATACTTACTAACAAAATAACTTTAAAATAAATTAAAAATTAATAAA
1 TAATTTATAATAATAACTAACAAAATAACTTTAAAATAAATT-AAAATAAACAAA
* * * *
67779594 -AATTTATATTAATAACCTAAC-AAATCAC---AATAA-ACATTAAACTAAACAAA
1 TAATTTATAATAATAA-CTAACAAAATAACTTTAA-AATAAATTAAAATAAACAAA
* *
67779644 TAATTTATAATAGTAACTAACAAAATGACTTTAAAATAAATTAAAA
1 TAATTTATAATAATAACTAACAAAATAACTTTAAAATAAATTAAAA
67779690 ACAACATAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 17
0.71 0.12 0.16
Matches are distributed among these distances:
50 14 0.19
51 25 0.33
52 2 0.03
53 2 0.03
54 27 0.36
55 5 0.07
ACGTcount: A:0.58, C:0.10, G:0.01, T:0.31
Consensus pattern (54 bp):
TAATTTATAATAATAACTAACAAAATAACTTTAAAATAAATTAAAATAAACAAA
Found at i:67779692 original size:51 final size:51
Alignment explanation
Indices: 67779539--67779698 Score: 137
Period size: 51 Copynumber: 3.1 Consensus size: 51
67779529 AACTAATAAT
* * *
67779539 TAATTTATAATACTTACTAACAAAATAACTTTAAAATAAATTAAAAATTAATAA
1 TAATTTATAATAATAACTAACAAAATAACTTTAAAATAAATTAAAAA--CA-AA
* * * ** *
67779593 AAATTTATATTAATAACCTAAC-AAATCACAATAAACATTAAACT--AAACAAA
1 TAATTTATAATAATAA-CTAACAAAATAACTTTAAA-A-TAAATTAAAAACAAA
* *
67779644 TAATTTATAATAGTAACTAACAAAATGACTTTAAAATAAATTAAAAACAACA
1 TAATTTATAATAATAACTAACAAAATAACTTTAAAATAAATTAAAAACAA-A
67779696 TAA
1 TAA
67779699 AAACAACAAT
Statistics
Matches: 83, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
49 5 0.06
50 6 0.07
51 31 0.37
52 5 0.06
54 25 0.30
55 6 0.07
56 5 0.06
ACGTcount: A:0.58, C:0.11, G:0.01, T:0.30
Consensus pattern (51 bp):
TAATTTATAATAATAACTAACAAAATAACTTTAAAATAAATTAAAAACAAA
Found at i:67780013 original size:24 final size:25
Alignment explanation
Indices: 67779983--67780031 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
67779973 ACCATTAAAT
*
67779983 AAAATAAATTTTA-TAAAAATATAA
1 AAAATAAATTTTATTAAAAAAATAA
67780007 AAAATAAATTTTATTAAAAAAATAA
1 AAAATAAATTTTATTAAAAAAATAA
67780032 CGGTATTGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
AAAATAAATTTTATTAAAAAAATAA
Found at i:67787707 original size:18 final size:20
Alignment explanation
Indices: 67787670--67787710 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
67787660 AAATTTTTCA
*
67787670 AAATTTTTGAAAAACTAATT
1 AAATTTTTGAAAAACAAATT
67787690 AAATTTTT-AAAAA-AAATT
1 AAATTTTTGAAAAACAAATT
67787708 AAA
1 AAA
67787711 AAGCTAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 5 0.25
20 8 0.40
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (20 bp):
AAATTTTTGAAAAACAAATT
Found at i:67787718 original size:30 final size:28
Alignment explanation
Indices: 67787679--67787736 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
67787669 AAAATTTTTG
* *
67787679 AAAAACTAATTAAATTTTTAAAAAAAATT
1 AAAAACTAATGAAA-ATTTAAAAAAAATT
*
67787708 AAAAAGCTAATGAAAATTTAAAAATAATT
1 AAAAA-CTAATGAAAATTTAAAAAAAATT
67787737 CAGATTGCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (28 bp):
AAAAACTAATGAAAATTTAAAAAAAATT
Found at i:67790724 original size:64 final size:63
Alignment explanation
Indices: 67790588--67790793 Score: 168
Period size: 69 Copynumber: 3.1 Consensus size: 63
67790578 CACTCACATG
* * * * *
67790588 CTCACACTTACTCT-ATAAATAAGTGTCAGTTTCTTAACTATTTTCTTTAACAACTTAGTTTTAA
1 CTCACATTTA-TCTGATAAATAAGTGT-AATTTCTT-ACTATTTTCATTAAAAACTTAATTTTAA
67790652 T
63 T
*
67790653 C-CTACATTTATCTGATAAATAAGTGATAATTTCTTACTATTTTCATTAAAAATTTAATTTTAAT
1 CTC-ACATTTATCTGATAAATAAGTG-TAATTTCTTACTATTTTCATTAAAAACTTAATTTTAAT
* * * * *
67790717 CTCACATTGAT-TAGAGAATACTCTCATAG-CTAACTTTTTTACTATTTTCATTAAAAAGTTAAT
1 CTCACATTTATCT-GATAA-A---T-A-AGTGTAA-TTTCTTACTATTTTCATTAAAAACTTAAT
67790780 TTTAAT
58 TTTAAT
67790786 CTCACATT
1 CTCACATT
67790794 AACTAAAATA
Statistics
Matches: 118, Mismatches: 11, Indels: 20
0.79 0.07 0.13
Matches are distributed among these distances:
63 1 0.01
64 41 0.35
65 27 0.23
66 1 0.01
68 4 0.03
69 42 0.36
70 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.45
Consensus pattern (63 bp):
CTCACATTTATCTGATAAATAAGTGTAATTTCTTACTATTTTCATTAAAAACTTAATTTTAAT
Found at i:67790767 original size:69 final size:68
Alignment explanation
Indices: 67790686--67790862 Score: 241
Period size: 69 Copynumber: 2.6 Consensus size: 68
67790676 TGATAATTTC
* *
67790686 TTACTATTTTCATTAAAAATTTAATTTTAATCTCACATTGATTAGAGA-ATACTCTCATAGCTAA
1 TTACTATTTTCATTAAAAA-TTAATTTTAATCTCACATTGACTA-AAATATACTCTCATAGCTAA
* *
67790750 CTTTT
64 CGTAT
* *
67790755 TTACTATTTTCATTAAAAAGTTAATTTTAATCTCACATTAACTAAAATATACTCTCATAGCTCAC
1 TTACTATTTTCATTAAAAA-TTAATTTTAATCTCACATTGACTAAAATATACTCTCATAGCTAAC
67790820 GTAT
65 GTAT
*
67790824 TCACTATTTTCATTAAAAATTAATTTTAAT-TCCACATTG
1 TTACTATTTTCATTAAAAATTAATTTTAATCT-CACATTG
67790863 GCTAGACAAC
Statistics
Matches: 97, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
67 1 0.01
68 19 0.20
69 77 0.79
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.44
Consensus pattern (68 bp):
TTACTATTTTCATTAAAAATTAATTTTAATCTCACATTGACTAAAATATACTCTCATAGCTAACG
TAT
Found at i:67792426 original size:19 final size:18
Alignment explanation
Indices: 67792393--67792428 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
67792383 ACATTCAAAG
*
67792393 CCAAACAAACTTATCAAT
1 CCAAACAAAATTATCAAT
67792411 CCAAACAAAATATATCAA
1 CCAAACAAAAT-TATCAA
67792429 CTTATGGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.25, G:0.00, T:0.19
Consensus pattern (18 bp):
CCAAACAAAATTATCAAT
Found at i:67794102 original size:69 final size:69
Alignment explanation
Indices: 67793989--67794137 Score: 192
Period size: 69 Copynumber: 2.2 Consensus size: 69
67793979 AAGTGACAAT
* ** * * *
67793989 TTCTTCACTATTTTTATTAAAAAATTAATTTTAATCCTACATTGACTAGAGAATACTCTCATAGA
1 TTCTTCACTATATCCATTAAAAAATCAATTTTAATCCCAAATTGACTAGAGAATACTCTCATA-A
67794054 -TAAC
65 CTAAC
* *
67794058 TTCTTCACTATATCCATTAAAAAGTCAATTTTAATCCCAAATTGACTAGAGAATACTTTCATAAC
1 TTCTTCACTATATCCATTAAAAAATCAATTTTAATCCCAAATTGACTAGAGAATACTCTCATAAC
*
67794123 TCAC
66 TAAC
*
67794127 TTATTCACTAT
1 TTCTTCACTAT
67794138 TAAAAATTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
68 1 0.01
69 68 0.99
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.39
Consensus pattern (69 bp):
TTCTTCACTATATCCATTAAAAAATCAATTTTAATCCCAAATTGACTAGAGAATACTCTCATAAC
TAAC
Found at i:67794160 original size:21 final size:22
Alignment explanation
Indices: 67794134--67794177 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
67794124 CACTTATTCA
67794134 CTATTAAAAATT-AATTTTAAT
1 CTATTAAAAATTAAATTTTAAT
*
67794155 CTATTAAAACTTAAATTTTAAT
1 CTATTAAAAATTAAATTTTAAT
67794177 C
1 C
67794178 CCACATTAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (22 bp):
CTATTAAAAATTAAATTTTAAT
Found at i:67809957 original size:17 final size:18
Alignment explanation
Indices: 67809915--67809958 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
67809905 ATATCAGGAC
67809915 AAAATTATAAAAATTATTG
1 AAAATTA-AAAAATTATTG
* *
67809934 AATATTAAAATATTATT-
1 AAAATTAAAAAATTATTG
67809951 AAAATTAA
1 AAAATTAA
67809959 TATAAGATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 7 0.32
18 9 0.41
19 6 0.27
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
AAAATTAAAAAATTATTG
Found at i:67809988 original size:20 final size:20
Alignment explanation
Indices: 67809960--67810034 Score: 68
Period size: 21 Copynumber: 3.8 Consensus size: 20
67809950 TAAAATTAAT
67809960 ATAAGATTATAAAAATTGTTA
1 ATAAGATTATAAAAATT-TTA
67809981 ATAA-ATTAT-AAAATTTT-
1 ATAAGATTATAAAAATTTTA
*
67809998 ATAAAATTAATAAAACATATTTA
1 ATAAGATT-ATAAAA-AT-TTTA
*
67810021 A-AATATTATAAAAA
1 ATAAGATTATAAAAA
67810035 CGTATAAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
17 4 0.09
18 5 0.11
19 8 0.17
20 9 0.19
21 12 0.26
22 8 0.17
23 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (20 bp):
ATAAGATTATAAAAATTTTA
Found at i:67810062 original size:10 final size:9
Alignment explanation
Indices: 67809915--67810143 Score: 104
Period size: 10 Copynumber: 23.4 Consensus size: 9
67809905 ATATCAGGAC
67809915 AAAATTATA
1 AAAATTATA
*
67809924 AAAATTATTG
1 AAAATTA-TA
*
67809934 AATATTA-A
1 AAAATTATA
* *
67809942 AATATTATT
1 AAAATTATA
67809951 AAAATTAATA
1 AAAATT-ATA
*
67809961 TAAGATTATA
1 -AAAATTATA
*
67809971 AAAATTGTTA
1 AAAATT-ATA
67809981 ATAAATTAT-
1 A-AAATTATA
*
67809990 AAAATTTTA
1 AAAATTATA
67809999 TAAAATTAATA
1 -AAAATT-ATA
*
67810010 AAACATATTTA
1 AAA-AT-TATA
67810021 AAATATTATA
1 AAA-ATTATA
*
67810031 AAAACGTATA
1 AAAA-TTATA
*
67810041 AAAATTCTTA
1 AAAATT-ATA
67810051 AAAACTTATAA
1 AAAA-TTAT-A
* *
67810062 AAAATAAAA
1 AAAATTATA
67810071 AAAATTACTA
1 AAAATTA-TA
67810081 AAAATTATA
1 AAAATTATA
* *
67810090 AAAGTTATTC
1 AAAATTA-TA
*
67810100 AAAA-TATT
1 AAAATTATA
67810108 AAAATTGATA
1 AAAATT-ATA
*
67810118 TAAACTTATA
1 -AAAATTATA
67810128 TAAATATATATA
1 -AAA-AT-TATA
67810140 AAAA
1 AAAA
67810144 AGTCATAAAA
Statistics
Matches: 168, Mismatches: 30, Indels: 43
0.70 0.12 0.18
Matches are distributed among these distances:
8 18 0.11
9 38 0.23
10 70 0.42
11 37 0.22
12 5 0.03
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (9 bp):
AAAATTATA
Found at i:67810813 original size:19 final size:19
Alignment explanation
Indices: 67810732--67810813 Score: 51
Period size: 19 Copynumber: 4.2 Consensus size: 19
67810722 ATTTTAATAG
*
67810732 TTTAAATATTTTTA-TGATT
1 TTTAAAT-TTTTTATTAATT
**
67810751 TATTATAATTGTTTTAAGAA-T
1 T-TTA-AATT-TTTTATTAATT
* * *
67810772 TTTAAACGTTTTTATCAAAT
1 TTTAAA-TTTTTTATTAATT
67810792 TTTAAATTTTTTATTAATT
1 TTTAAATTTTTTATTAATT
67810811 TTT
1 TTT
67810814 TATAATTTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
19 23 0.47
20 15 0.31
21 10 0.20
22 1 0.02
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (19 bp):
TTTAAATTTTTTATTAATT
Found at i:67810872 original size:29 final size:31
Alignment explanation
Indices: 67810839--67810918 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 31
67810829 TTTATCAGAT
**
67810839 TTTTTAATAATATTTATAAGCATA-TATTAA
1 TTTTTAATAATATTTATAAAAATATTATTAA
* * *
67810869 -TTTTAATAGTATTTTAAAAAAATATTTTTAA
1 TTTTTAATAATA-TTTATAAAAATATTATTAA
*
67810900 TTTTTAATAATTTTTATAA
1 TTTTTAATAATATTTATAA
67810919 TTTTCCTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
29 10 0.26
30 9 0.23
31 11 0.28
32 9 0.23
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (31 bp):
TTTTTAATAATATTTATAAAAATATTATTAA
Found at i:67821082 original size:243 final size:243
Alignment explanation
Indices: 67820654--67821145 Score: 867
Period size: 243 Copynumber: 2.0 Consensus size: 243
67820644 ATCTTCTTGT
*
67820654 CATTCCAGTGGATGGAGACAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
1 CATTCCAGTAGATGGAGACAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
** *
67820719 CCCAGCTGCAATTTCTTCAGGAAGACTCTGCTGAAATGTTTTGGGGAGATCCTTTCCAACCCACC
66 CCCAGCTGCAATTTCTTCAGGAAGACTCCACTGAAATGTTTCGGGGAGATCCTTTCCAACCCACC
*
67820784 TACAAGGAGAATGAAAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
131 TACAAGGAGAATGAAAGAAAGGATAGTGCTGCTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
*
67820849 AGAGATGAATTCATCAACAGCGGATATCTTCAGGGTATGGGATTTGGA
196 AGAGATGAATTCATCAACAGCGGATATCTTCAAGGTATGGGATTTGGA
*
67820897 CATTCCAGTAGATGGGGACAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
1 CATTCCAGTAGATGGAGACAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
** * * *
67820962 CTGAGCTGCAATTTCTTCAGGAAGATTCCACTGAAGTGTTTCGGGGAGATCCTTTCCGACCCACC
66 CCCAGCTGCAATTTCTTCAGGAAGACTCCACTGAAATGTTTCGGGGAGATCCTTTCCAACCCACC
67821027 TACAAGGAGAATGAAAGAAAGGATAGTGCTGCTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
131 TACAAGGAGAATGAAAGAAAGGATAGTGCTGCTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
*
67821092 AGAGATGAATTCATCAACAGTGGATATCTTCAAGGTATGGGATTTGGA
196 AGAGATGAATTCATCAACAGCGGATATCTTCAAGGTATGGGATTTGGA
67821140 CATTCC
1 CATTCC
67821146 GGATGAGGAA
Statistics
Matches: 236, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
243 236 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (243 bp):
CATTCCAGTAGATGGAGACAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
CCCAGCTGCAATTTCTTCAGGAAGACTCCACTGAAATGTTTCGGGGAGATCCTTTCCAACCCACC
TACAAGGAGAATGAAAGAAAGGATAGTGCTGCTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
AGAGATGAATTCATCAACAGCGGATATCTTCAAGGTATGGGATTTGGA
Found at i:67821659 original size:75 final size:75
Alignment explanation
Indices: 67821568--67821760 Score: 386
Period size: 75 Copynumber: 2.6 Consensus size: 75
67821558 GCATTTTTCG
67821568 TTATACATGGTAATGTATGTATGAGAATATAATTTAGTGTGGGGCTGGTTAGTTCATCAGAGCAA
1 TTATACATGGTAATGTATGTATGAGAATATAATTTAGTGTGGGGCTGGTTAGTTCATCAGAGCAA
67821633 AACAACGTTC
66 AACAACGTTC
67821643 TTATACATGGTAATGTATGTATGAGAATATAATTTAGTGTGGGGCTGGTTAGTTCATCAGAGCAA
1 TTATACATGGTAATGTATGTATGAGAATATAATTTAGTGTGGGGCTGGTTAGTTCATCAGAGCAA
67821708 AACAACGTTC
66 AACAACGTTC
67821718 TTATACATGGTAATGTATGTATGAGAATATAATTTAGTGTGGG
1 TTATACATGGTAATGTATGTATGAGAATATAATTTAGTGTGGG
67821761 TGGTACAAGT
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 118 1.00
ACGTcount: A:0.32, C:0.09, G:0.24, T:0.35
Consensus pattern (75 bp):
TTATACATGGTAATGTATGTATGAGAATATAATTTAGTGTGGGGCTGGTTAGTTCATCAGAGCAA
AACAACGTTC
Found at i:67824154 original size:177 final size:177
Alignment explanation
Indices: 67823858--67824215 Score: 689
Period size: 177 Copynumber: 2.0 Consensus size: 177
67823848 AAATGGACCC
67823858 CACGAATGGTTTAATTACGAATTGTAGATTAAATCAGCCCTAAATAAAAATTCTAGAAAAATAGG
1 CACGAATGGTTTAATTACGAATTGTAGATTAAATCAGCCCTAAATAAAAATTCTAGAAAAATAGG
*
67823923 CCACATGCCTAAGTGGATTTACACAATCCAAATGACTAGCCCATGTGGCCCACAGGGTTACCTAT
66 CCACATGCCTAAGTGGATTTACACAACCCAAATGACTAGCCCATGTGGCCCACAGGGTTACCTAT
*
67823988 CCTGCCTGTGTGATTTCACACGCTCGTGTGTCCGACATGGCCAGCCA
131 CCTGCCTATGTGATTTCACACGCTCGTGTGTCCGACATGGCCAGCCA
67824035 CACGAATGGTTTAATTACGAATTGTAGATTAAATCAGCCCTAAATAAAAATTCTAGAAAAATAGG
1 CACGAATGGTTTAATTACGAATTGTAGATTAAATCAGCCCTAAATAAAAATTCTAGAAAAATAGG
*
67824100 CCACATGCCTAAGTGGATTTACACGACCCAAATGACTAGCCCATGTGGCCCACAGGGTTACCTAT
66 CCACATGCCTAAGTGGATTTACACAACCCAAATGACTAGCCCATGTGGCCCACAGGGTTACCTAT
67824165 CCTGCCTATGTGATTTCACACGCTCGTGTGTCCGACATGGCCAGCCA
131 CCTGCCTATGTGATTTCACACGCTCGTGTGTCCGACATGGCCAGCCA
67824212 CACG
1 CACG
67824216 GCCATGTGAC
Statistics
Matches: 178, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
177 178 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (177 bp):
CACGAATGGTTTAATTACGAATTGTAGATTAAATCAGCCCTAAATAAAAATTCTAGAAAAATAGG
CCACATGCCTAAGTGGATTTACACAACCCAAATGACTAGCCCATGTGGCCCACAGGGTTACCTAT
CCTGCCTATGTGATTTCACACGCTCGTGTGTCCGACATGGCCAGCCA
Found at i:67836921 original size:28 final size:28
Alignment explanation
Indices: 67836883--67836951 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
67836873 CCAAAAAATT
67836883 CAACGGCCATATTGCAACGA-CTAGATTC
1 CAACGGCCATATTGCAACGATC-AGATTC
* *
67836911 CAACGGTCATATTGTAACGATCAGATTC
1 CAACGGCCATATTGCAACGATCAGATTC
**
67836939 CAACTACCATATT
1 CAACGGCCATATT
67836952 ATAACGGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 34 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (28 bp):
CAACGGCCATATTGCAACGATCAGATTC
Found at i:67836964 original size:28 final size:28
Alignment explanation
Indices: 67836883--67836965 Score: 76
Period size: 28 Copynumber: 3.0 Consensus size: 28
67836873 CCAAAAAATT
* ** *
67836883 CAACGGCCATATTGCAACGACTAGATTC
1 CAACGACCATATTATAACGATTAGATTC
** * *
67836911 CAACGGTCATATTGTAACGATCAGATTC
1 CAACGACCATATTATAACGATTAGATTC
* *
67836939 CAACTACCATATTATAACGGTTAGATT
1 CAACGACCATATTATAACGATTAGATT
67836966 TTTGCATTAC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (28 bp):
CAACGACCATATTATAACGATTAGATTC
Found at i:67838377 original size:12 final size:12
Alignment explanation
Indices: 67838360--67838384 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67838350 GACTAAATTG
67838360 AAATAAAATAAA
1 AAATAAAATAAA
67838372 AAATAAAATAAA
1 AAATAAAATAAA
67838384 A
1 A
67838385 CCCTAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAATAAAATAAA
Found at i:67843215 original size:12 final size:11
Alignment explanation
Indices: 67843198--67843231 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
67843188 ACCTTGTGTG
67843198 TGTTCTTTCTGT
1 TGTTCTTT-TGT
67843210 TGTTCTTTTGT
1 TGTTCTTTTGT
67843221 TGCTTCTTTTG
1 TG-TTCTTTTG
67843232 GCATAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.00, C:0.15, G:0.18, T:0.68
Consensus pattern (11 bp):
TGTTCTTTTGT
Found at i:67849204 original size:21 final size:20
Alignment explanation
Indices: 67849168--67849206 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67849158 CTTTGACCGA
*
67849168 TCATTGACTAGTGTTGACTG
1 TCATTGACTAGCGTTGACTG
67849188 TCATTGACTATGCGTTGAC
1 TCATTGACTA-GCGTTGAC
67849207 CAACCACGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (20 bp):
TCATTGACTAGCGTTGACTG
Found at i:67849974 original size:22 final size:22
Alignment explanation
Indices: 67849949--67849998 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
67849939 TTTATTTACA
67849949 ATTTTA-CTCGTTTTTTTAAATT
1 ATTTTATCTC-TTTTTTTAAATT
* *
67849971 ATTTTATGTCTTTTTTTAAAAT
1 ATTTTATCTCTTTTTTTAAATT
67849993 -TTTTAT
1 ATTTTAT
67849999 ATATTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 6 0.24
22 17 0.68
23 2 0.08
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.66
Consensus pattern (22 bp):
ATTTTATCTCTTTTTTTAAATT
Found at i:67853448 original size:13 final size:13
Alignment explanation
Indices: 67853430--67853459 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
67853420 TATTTGGTAG
67853430 TACAAATTGTAAT
1 TACAAATTGTAAT
67853443 TACAAATTGTAAT
1 TACAAATTGTAAT
67853456 TACA
1 TACA
67853460 TAGTTACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (13 bp):
TACAAATTGTAAT
Found at i:67857565 original size:15 final size:16
Alignment explanation
Indices: 67857535--67857567 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
67857525 TAGTTACTTA
*
67857535 TTTGGGTCATTTCGAG
1 TTTGGATCATTTCGAG
67857551 TTTGGATCA-TTCGAG
1 TTTGGATCATTTCGAG
67857566 TT
1 TT
67857568 AGTTTTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.15, C:0.12, G:0.27, T:0.45
Consensus pattern (16 bp):
TTTGGATCATTTCGAG
Found at i:67865484 original size:21 final size:23
Alignment explanation
Indices: 67865442--67865484 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
67865432 TTATCATTGT
**
67865442 TATAAAAAATATTTAATTATAAC
1 TATAAAAAATATTTAAAAATAAC
67865465 TATAAAAAA-A-TTAAAAATAA
1 TATAAAAAATATTTAAAAATAA
67865485 TTATCATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.44
22 1 0.06
23 9 0.50
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (23 bp):
TATAAAAAATATTTAAAAATAAC
Found at i:67865750 original size:21 final size:21
Alignment explanation
Indices: 67865726--67865778 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
67865716 CATTATTTCT
*
67865726 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
67865747 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
67865768 AATCTCACCGC
1 AATCTCACCGC
67865779 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.40, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:67868591 original size:10 final size:10
Alignment explanation
Indices: 67868569--67868618 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
67868559 TTAAAACGAA
*
67868569 AAAACTTTA-
1 AAAATTTTAT
67868578 AAAATTTTAT
1 AAAATTTTAT
67868588 AAAATTTTAT
1 AAAATTTTAT
*
67868598 AAAATCATATAT
1 AAAAT--TTTAT
67868610 AAAATTTTA
1 AAAATTTTA
67868619 AACTTTATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
9 8 0.23
10 18 0.51
12 9 0.26
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (10 bp):
AAAATTTTAT
Found at i:67868659 original size:31 final size:31
Alignment explanation
Indices: 67868576--67868663 Score: 88
Period size: 31 Copynumber: 2.7 Consensus size: 31
67868566 GAAAAAACTT
* *
67868576 TAAAAATTTTATAAAATTTTATAAAATCATATA
1 TAAAAA-TTTA-AAAATATTAAAAAATCATATA
* **
67868609 TAAAATTTTAAACTTTATTAAAAAAT-ATATA
1 TAAAAATTTAAA-AATATTAAAAAATCATATA
67868640 TAAATAATTTAAAAATATTAAAAA
1 TAAA-AATTTAAAAATATTAAAAA
67868664 GTTGTAAAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
31 20 0.44
32 20 0.44
33 5 0.11
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (31 bp):
TAAAAATTTAAAAATATTAAAAAATCATATA
Found at i:67868671 original size:19 final size:18
Alignment explanation
Indices: 67868630--67868741 Score: 77
Period size: 19 Copynumber: 5.9 Consensus size: 18
67868620 ACTTTATTAA
67868630 AAAATATATATAAATAATT-T
1 AAAA-ATAT-TAAA-AATTGT
67868650 AAAAATATTAAAAAGTTGT
1 AAAAATATTAAAAA-TTGT
* * *
67868669 AAAAGTTCTTAAAAATGGT
1 AAAA-ATATTAAAAATTGT
67868688 AAAAA-AGTATAAAAATTGT
1 AAAAATA-T-TAAAAATTGT
* *
67868707 AAAAAAATTTAAAA-TGT
1 AAAAATATTAAAAATTGT
67868724 AAAAACTATTAAATAATT
1 AAAAA-TATTAAA-AATT
67868742 TATTTTTTTT
Statistics
Matches: 74, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
17 10 0.14
18 17 0.23
19 33 0.45
20 14 0.19
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (18 bp):
AAAAATATTAAAAATTGT
Found at i:67869152 original size:10 final size:10
Alignment explanation
Indices: 67869051--67869154 Score: 56
Period size: 9 Copynumber: 10.5 Consensus size: 10
67869041 CATTTTTTAT
67869051 TTTTATAATAA
1 TTTT-TAATAA
*
67869062 ATTTTAA-AA
1 TTTTTAATAA
67869071 TTTTCTAAATAA
1 TTTT-T-AATAA
*
67869083 TTTTTTACTAA
1 -TTTTTAATAA
*
67869094 TTTTT-ATAT
1 TTTTTAATAA
*
67869103 TTTTTTA-AA
1 TTTTTAATAA
* *
67869112 TTTTTACT-C
1 TTTTTAATAA
*
67869121 TTTTT-TTAA
1 TTTTTAATAA
*
67869130 TTTTAAATAA
1 TTTTTAATAA
*
67869140 TTTTTAATGA
1 TTTTTAATAA
67869150 TTTTT
1 TTTTT
67869155 TGATCTGTCA
Statistics
Matches: 70, Mismatches: 15, Indels: 17
0.69 0.15 0.17
Matches are distributed among these distances:
8 1 0.01
9 27 0.39
10 26 0.37
11 9 0.13
12 3 0.04
13 4 0.06
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:67882744 original size:13 final size:13
Alignment explanation
Indices: 67882708--67882757 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
67882698 TCTTCATTGC
67882708 TTTTGAAAAGTG-
1 TTTTGAAAAGTGA
*
67882720 TTGTGGAAAAGTGA
1 TT-TTGAAAAGTGA
* *
67882734 TTTTGAGAAGTGC
1 TTTTGAAAAGTGA
67882747 TTTTGAAAAGT
1 TTTTGAAAAGT
67882758 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
12 2 0.06
13 27 0.87
14 2 0.06
ACGTcount: A:0.32, C:0.02, G:0.28, T:0.38
Consensus pattern (13 bp):
TTTTGAAAAGTGA
Found at i:67884421 original size:6 final size:6
Alignment explanation
Indices: 67884410--67884437 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
67884400 ACTATAGTAT
67884410 TGGTAG TGGTAG TGGTAG TGGTAG TGGT
1 TGGTAG TGGTAG TGGTAG TGGTAG TGGT
67884438 TCATAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.50, T:0.36
Consensus pattern (6 bp):
TGGTAG
Found at i:67886263 original size:17 final size:17
Alignment explanation
Indices: 67886241--67886284 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
67886231 TTTTTTAAAA
67886241 TATAAATTTGGAATTTT
1 TATAAATTTGGAATTTT
*
67886258 TATAAATATTTTGAATTTT
1 TAT-AA-ATTTGGAATTTT
*
67886277 TAAAAATT
1 TATAAATT
67886285 ATTTTAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 6 0.26
18 4 0.17
19 13 0.57
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (17 bp):
TATAAATTTGGAATTTT
Found at i:67886273 original size:19 final size:20
Alignment explanation
Indices: 67886246--67886299 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
67886236 TAAAATATAA
*
67886246 ATTTGGAATTTTTATAAA-T
1 ATTTTGAATTTTTATAAATT
*
67886265 ATTTTGAATTTTTAAAAATT
1 ATTTTGAATTTTTATAAATT
*
67886285 ATTTTAAATTTTTAT
1 ATTTTGAATTTTTAT
67886300 TTAGAGAGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:67886277 original size:20 final size:20
Alignment explanation
Indices: 67886252--67886298 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
67886242 ATAAATTTGG
* *
67886252 AATTTTTATAAA-TATTTTG
1 AATTTTTAAAAATTATTTTA
67886271 AATTTTTAAAAATTATTTTA
1 AATTTTTAAAAATTATTTTA
67886291 AATTTTTA
1 AATTTTTA
67886299 TTTAGAGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
AATTTTTAAAAATTATTTTA
Found at i:67887962 original size:18 final size:18
Alignment explanation
Indices: 67887939--67887974 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
67887929 AGATTTATCA
67887939 TTTTAGCACATTAAACTT
1 TTTTAGCACATTAAACTT
*
67887957 TTTTAGCACATTGAACTT
1 TTTTAGCACATTAAACTT
67887975 ACTAAGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (18 bp):
TTTTAGCACATTAAACTT
Found at i:67892891 original size:23 final size:22
Alignment explanation
Indices: 67892848--67892892 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
67892838 GTTAAATTGA
* **
67892848 ATTGTATGTATGTGATTGTATT
1 ATTGTATGTATATGAAAGTATT
67892870 ATTGTCATGTATATGAAAGTATT
1 ATTGT-ATGTATATGAAAGTATT
67892893 CATATATCCG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (22 bp):
ATTGTATGTATATGAAAGTATT
Found at i:67893165 original size:26 final size:26
Alignment explanation
Indices: 67893136--67893203 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
67893126 CCCGATATAT
*
67893136 GGCTCTTCATGAG-TTTTTCGATTAAA
1 GGCTCTTCATGAGCTTCTT-GATTAAA
** *
67893162 GGCTCTTTGTGAGCTTCTTGATTAAT
1 GGCTCTTCATGAGCTTCTTGATTAAA
67893188 GGCTCTTCA-GAGCTTC
1 GGCTCTTCATGAGCTTC
67893204 CCGATATGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
25 7 0.20
26 24 0.69
27 4 0.11
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (26 bp):
GGCTCTTCATGAGCTTCTTGATTAAA
Found at i:67893272 original size:24 final size:24
Alignment explanation
Indices: 67893183--67893324 Score: 64
Period size: 24 Copynumber: 5.9 Consensus size: 24
67893173 AGCTTCTTGA
67893183 TTAATGGCTCTTCAGAGCTTCCCG
1 TTAATGGCTCTTCAGAGCTTCCCG
* * *
67893207 AT-ATGGCTCGCTT--GAACTTCCCA
1 TTAATGGCT--CTTCAGAGCTTCCCG
* * *
67893230 CTATATGGCT-ATCTGGAGCTTCCCG
1 TTA-ATGGCTCTTC-AGAGCTTCCCG
* *
67893255 TTAATGGCTCTTCAGAGCTACCTG
1 TTAATGGCTCTTCAGAGCTTCCCG
* * * *
67893279 TTATTAGCTC-GCATGAGCTTCTCG
1 TTAATGGCTCTTCA-GAGCTTCCCG
67893303 ATT-ATGGCTCTT-ATGAGCTTCC
1 -TTAATGGCTCTTCA-GAGCTTCC
67893325 TATTATACAG
Statistics
Matches: 85, Mismatches: 22, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
22 1 0.01
23 17 0.20
24 44 0.52
25 23 0.27
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (24 bp):
TTAATGGCTCTTCAGAGCTTCCCG
Found at i:67893297 original size:48 final size:49
Alignment explanation
Indices: 67893245--67893362 Score: 134
Period size: 48 Copynumber: 2.4 Consensus size: 49
67893235 TGGCTATCTG
* *
67893245 GAGCTTCCCGTTAATGGCTCTTCA-GAGCTACCTGTTAT-TAGCTCGCAT
1 GAGCTTCCCGTTAATGGCTCTT-ATGAGCTACCTATTATACAGCTCGCAT
* * *
67893293 GAGCTTCTCGATT-ATGGCTCTTATGAGCTTCCTATTATACAGCTCGGAT
1 GAGCTTCCCG-TTAATGGCTCTTATGAGCTACCTATTATACAGCTCGCAT
*
67893342 AAGCTTCCCGTTATATGGCTC
1 GAGCTTCCCGTTA-ATGGCTC
67893363 GAGAGAGGGC
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
47 1 0.02
48 32 0.55
49 18 0.31
50 7 0.12
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.35
Consensus pattern (49 bp):
GAGCTTCCCGTTAATGGCTCTTATGAGCTACCTATTATACAGCTCGCAT
Found at i:67893560 original size:5 final size:5
Alignment explanation
Indices: 67893550--67893617 Score: 136
Period size: 5 Copynumber: 13.6 Consensus size: 5
67893540 TTGAAGTACA
67893550 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
67893600 ATGAT ATGAT ATGAT ATG
1 ATGAT ATGAT ATGAT ATG
67893618 TACATGTTCA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 63 1.00
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.40
Consensus pattern (5 bp):
ATGAT
Found at i:67896853 original size:21 final size:24
Alignment explanation
Indices: 67896810--67896855 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 24
67896800 ACTCACCCTG
67896810 TTCTACTTAGAATAAGACATTATT
1 TTCTACTTAGAATAAGACATTATT
*
67896834 TTCTA-TTA-AATAA-ATATTATT
1 TTCTACTTAGAATAAGACATTATT
67896855 T
1 T
67896856 ATATTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 5 0.24
23 3 0.14
24 5 0.24
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (24 bp):
TTCTACTTAGAATAAGACATTATT
Found at i:67900111 original size:27 final size:28
Alignment explanation
Indices: 67900089--67900494 Score: 153
Period size: 27 Copynumber: 14.2 Consensus size: 28
67900079 GTTTTTCCAA
*
67900089 TATTTTCCAGATTTTACACTTTTTGCCCC
1 TATTTTCCAGATTTTACA-ATTTTGCCCC
* *
67900118 TATTTTCCAAATTTTACACTTTTG-CCC
1 TATTTTCCAGATTTTACAATTTTGCCCC
*
67900145 TATTTTTCAGATTTTACAATTTT-CCCC
1 TATTTTCCAGATTTTACAATTTTGCCCC
** **
67900172 TATTTTAAAGATTTTACAATTTTGCTCGT
1 TATTTTCCAGATTTTACAATTTTGC-CCC
* * * * *
67900201 TTTTTTTCAAATTTTATAATTCTT-CCTC
1 TATTTTCCAGATTTTACAATT-TTGCCCC
** * * * *
67900229 TATTTTTTAGATTTTATAGTTTAGCCCT
1 TATTTTCCAGATTTTACAATTTTGCCCC
** *
67900257 TATTTTCCCCCTATTTTTCATATTTTATAGTTTAGCCCC
1 TATTTT--CCAGA-TTTT-ACA----AT--TTT-GCCCC
* * * *
67900296 TATTTTTCAAATTTTACAATTTTATCCAC
1 TATTTTCCAGATTTTACAATTTT-GCCCC
** * * * *
67900325 TATTTTTTAGATTTTATAGTTTTTCCACT
1 TATTTTCCAGATTTTACAATTTTGCC-CC
* ** *
67900354 TTTTTTTTAGGTTTTACAATTTT-CCCC
1 TATTTTCCAGATTTTACAATTTTGCCCC
* * * **
67900381 TATTTTTCAGATTTTACAACTTAG-CAT
1 TATTTTCCAGATTTTACAATTTTGCCCC
* * *
67900408 TATTTT-TATATTTTA-AATTTTGCCCA
1 TATTTTCCAGATTTTACAATTTTGCCCC
* * *
67900434 TATTTTTCAAATTTTAAAATTTTG-CCC
1 TATTTTCCAGATTTTACAATTTTGCCCC
** * *
67900461 TATTTTTTAGATTTTATAGTTTTGCCCC
1 TATTTTCCAGATTTTACAATTTTGCCCC
67900489 TATTTT
1 TATTTT
67900495 TTAAAAATTT
Statistics
Matches: 288, Mismatches: 67, Indels: 45
0.72 0.17 0.11
Matches are distributed among these distances:
25 5 0.02
26 14 0.05
27 103 0.36
28 53 0.18
29 80 0.28
30 3 0.01
31 6 0.02
32 3 0.01
35 2 0.01
36 5 0.02
37 2 0.01
38 2 0.01
39 10 0.03
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (28 bp):
TATTTTCCAGATTTTACAATTTTGCCCC
Found at i:67900282 original size:96 final size:95
Alignment explanation
Indices: 67900163--67900346 Score: 235
Period size: 96 Copynumber: 1.9 Consensus size: 95
67900153 AGATTTTACA
* ** * *
67900163 ATTTTCCCCTATTTTAAAGATTTTACAATTTTGCTCGTTTTTTTTCAAATTTTATAATTCT-TCC
1 ATTTTCCCCTATTTTAAAGATTTTACAATTTAGC-CCCTATTTTTCAAATTTTACAATTCTATCC
*
67900227 TCTATTTTTTAGATTTTATAGTTTAGCCCTT
65 ACTATTTTTTAGATTTTATAGTTTAGCCCTT
** * * * *
67900258 ATTTTCCCCCTATTTTTCATATTTTATAGTTTAGCCCCTATTTTTCAAATTTTACAATTTTATCC
1 ATTTT-CCCCTATTTTAAAGATTTTACAATTTAGCCCCTATTTTTCAAATTTTACAATTCTATCC
67900323 ACTATTTTTTAGATTTTATAGTTT
65 ACTATTTTTTAGATTTTATAGTTT
67900347 TTCCACTTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
95 26 0.35
96 49 0.65
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.55
Consensus pattern (95 bp):
ATTTTCCCCTATTTTAAAGATTTTACAATTTAGCCCCTATTTTTCAAATTTTACAATTCTATCCA
CTATTTTTTAGATTTTATAGTTTAGCCCTT
Found at i:67900319 original size:29 final size:28
Alignment explanation
Indices: 67900258--67900542 Score: 175
Period size: 29 Copynumber: 10.2 Consensus size: 28
67900248 TTTAGCCCTT
* * *
67900258 ATTTTCCCCCTATTTTTCATATTTTATA
1 ATTTTGCCCCTATTTTTCAAATTTTACA
* *
67900286 GTTTAGCCCCTATTTTTCAAATTTTACA
1 ATTTTGCCCCTATTTTTCAAATTTTACA
* * * * *
67900314 ATTTTATCCACTATTTTTTAGATTTTATA
1 ATTTT-GCCCCTATTTTTCAAATTTTACA
* * * * * **
67900343 GTTTTTCCACTTTTTTTTTAGGTTTTACA
1 ATTTTGCC-CCTATTTTTCAAATTTTACA
*
67900372 ATTTT-CCCCTATTTTTCAGATTTTACA
1 ATTTTGCCCCTATTTTTCAAATTTTACA
* * ** *
67900399 ACTTAG-CATTATTTTT-ATATTTTA-A
1 ATTTTGCCCCTATTTTTCAAATTTTACA
* *
67900424 ATTTTGCCCATATTTTTCAAATTTTAAA
1 ATTTTGCCCCTATTTTTCAAATTTTACA
* * *
67900452 ATTTTG-CCCTATTTTTTAGATTTTATA
1 ATTTTGCCCCTATTTTTCAAATTTTACA
* * *
67900479 GTTTTGCCCCTATTTTTTAAAAATTTTACT
1 ATTTTGCCCCTA-TTTTT-CAAATTTTACA
** * *
67900509 ATTTTGTCCCCTGCTTTACCAATTTTACA
1 ATTTTG-CCCCTATTTTTCAAATTTTACA
67900538 ATTTT
1 ATTTT
67900543 ACCCAGAATT
Statistics
Matches: 198, Mismatches: 49, Indels: 19
0.74 0.18 0.07
Matches are distributed among these distances:
25 5 0.03
26 15 0.08
27 56 0.28
28 43 0.22
29 59 0.30
30 15 0.08
31 5 0.03
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.54
Consensus pattern (28 bp):
ATTTTGCCCCTATTTTTCAAATTTTACA
Found at i:67900359 original size:57 final size:56
Alignment explanation
Indices: 67900258--67900449 Score: 153
Period size: 57 Copynumber: 3.4 Consensus size: 56
67900248 TTTAGCCCTT
* * *
67900258 ATTTTCCCCCTATTTTTCATATTTTATAGTTTAGCC-CCTATTTTTCAAATTTTACA
1 ATTTT-CCACTATTTTTCAGATTTTATAGTTTAGCCACTTATTTTTCAAATTTTACA
* ** * * **
67900314 ATTTTATCCACTATTTTTTAGATTTTATAGTTTTTCCACTTTTTTTTTAGGTTTTACA
1 A-TTT-TCCACTATTTTTCAGATTTTATAGTTTAGCCACTTATTTTTCAAATTTTACA
* * ** *
67900372 ATTTTCCCCTATTTTTCAGATTTTACAACTTAG-CA-TTATTTTT-ATATTTTA-A
1 ATTTTCCACTATTTTTCAGATTTTATAGTTTAGCCACTTATTTTTCAAATTTTACA
*
67900424 ATTTTGCC-CATATTTTTCAAATTTTA
1 ATTTT-CCAC-TATTTTTCAGATTTTA
67900450 AAATTTTGCC
Statistics
Matches: 110, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
52 7 0.06
53 23 0.21
54 7 0.06
55 2 0.02
56 23 0.21
57 31 0.28
58 17 0.15
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.55
Consensus pattern (56 bp):
ATTTTCCACTATTTTTCAGATTTTATAGTTTAGCCACTTATTTTTCAAATTTTACA
Found at i:67900438 original size:53 final size:55
Alignment explanation
Indices: 67900356--67900495 Score: 160
Period size: 53 Copynumber: 2.6 Consensus size: 55
67900346 TTTCCACTTT
* * * *
67900356 TTTTTTAGGTTTTACAATTTT-CCCCTATTTTTCAGATTTTACAACTTAGCATTA
1 TTTTTTAGATTTTACAATTTTGCCCCTATTTTTCAAATTTTAAAACTTAGCACTA
* * * * *
67900410 -TTTTTATATTTTA-AATTTTGCCCATATTTTTCAAATTTTAAAATTTTGCCCTA
1 TTTTTTAGATTTTACAATTTTGCCCCTATTTTTCAAATTTTAAAACTTAGCACTA
* *
67900463 TTTTTTAGATTTTATAGTTTTGCCCCTATTTTT
1 TTTTTTAGATTTTACAATTTTGCCCCTATTTTT
67900496 TAAAAATTTT
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
52 6 0.08
53 37 0.52
54 12 0.17
55 16 0.23
ACGTcount: A:0.24, C:0.14, G:0.06, T:0.56
Consensus pattern (55 bp):
TTTTTTAGATTTTACAATTTTGCCCCTATTTTTCAAATTTTAAAACTTAGCACTA
Found at i:67900495 original size:27 final size:28
Alignment explanation
Indices: 67900258--67900495 Score: 180
Period size: 27 Copynumber: 8.6 Consensus size: 28
67900248 TTTAGCCCTT
* * *
67900258 ATTTTCCCCCTATTTTTCATATTTTATA
1 ATTTTGCCCCTATTTTTCAGATTTTACA
* * *
67900286 GTTTAGCCCCTATTTTTCAAATTTTACA
1 ATTTTGCCCCTATTTTTCAGATTTTACA
* * * *
67900314 ATTTTATCCACTATTTTTTAGATTTTATA
1 ATTTT-GCCCCTATTTTTCAGATTTTACA
* * * * * *
67900343 GTTTTTCCACTTTTTTTTTAGGTTTTACA
1 ATTTTGCC-CCTATTTTTCAGATTTTACA
67900372 ATTTT-CCCCTATTTTTCAGATTTTACA
1 ATTTTGCCCCTATTTTTCAGATTTTACA
* * ** *
67900399 ACTTAG-CATTATTTTT-ATATTTTA-A
1 ATTTTGCCCCTATTTTTCAGATTTTACA
* * *
67900424 ATTTTGCCCATATTTTTCAAATTTTAAA
1 ATTTTGCCCCTATTTTTCAGATTTTACA
* *
67900452 ATTTTG-CCCTATTTTTTAGATTTTATA
1 ATTTTGCCCCTATTTTTCAGATTTTACA
*
67900479 GTTTTGCCCCTATTTTT
1 ATTTTGCCCCTATTTTT
67900496 TAAAAATTTT
Statistics
Matches: 165, Mismatches: 38, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
25 5 0.03
26 15 0.09
27 56 0.34
28 48 0.29
29 41 0.25
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.55
Consensus pattern (28 bp):
ATTTTGCCCCTATTTTTCAGATTTTACA
Found at i:67901442 original size:26 final size:26
Alignment explanation
Indices: 67901413--67901464 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
67901403 TAGAACCCTG
* *
67901413 TATGTGTGAACCCTATAG-GCAAACCT
1 TATGTGAGAACACTAT-GTGCAAACCT
67901439 TATGTGAGAACACTATGTGCAAACCT
1 TATGTGAGAACACTATGTGCAAACCT
67901465 ATTATGCATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (26 bp):
TATGTGAGAACACTATGTGCAAACCT
Found at i:67904753 original size:50 final size:51
Alignment explanation
Indices: 67904666--67904763 Score: 128
Period size: 50 Copynumber: 1.9 Consensus size: 51
67904656 TAAATTTAGT
* * * *
67904666 CCTCAAATTTTACATATTATATCAATTTAGTCATAATT-TTGAAAATTAAC
1 CCTCAAAATTTACAAATGATATCAATTTAGTCATAATTCTAGAAAATTAAC
*
67904716 CCTCAAAATTTACAAATGATATCAATTT-GATCCTAATTCTAGAAAATT
1 CCTCAAAATTTACAAATGATATCAATTTAG-TCATAATTCTAGAAAATT
67904764 CAAAGAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.02
50 32 0.78
51 8 0.20
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (51 bp):
CCTCAAAATTTACAAATGATATCAATTTAGTCATAATTCTAGAAAATTAAC
Found at i:67907085 original size:21 final size:21
Alignment explanation
Indices: 67907055--67907100 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
67907045 TAAACAACTA
* * *
67907055 AAGCATAGGCGGCAGCAAGGG
1 AAGCAGAGGCCGCAGCAAGAG
67907076 AAGCAGAGGCCGCAGCAAGAG
1 AAGCAGAGGCCGCAGCAAGAG
67907097 AAGC
1 AAGC
67907101 TGCGAGAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.22, G:0.39, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCAAGAG
Done.