Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 210 of 210
Found at i:69809587 original size:103 final size:102
Alignment explanation
Indices: 69809464--69809793 Score: 452
Period size: 103 Copynumber: 3.2 Consensus size: 102
69809454 CCAGTGATTT
*
69809464 GGGGAACCAGCACTTAGCAACCCCTTTCACATTCAAAGATATGATGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAGATATG-TGGAATCAGCACTTAGCAACC
* * *
69809529 ACCAATGATTCGGGGAATCAACACTTAGCAGCCCCTTG
65 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
* * * *
69809567 GGGGAATCAGTACTTAGCAACCCC-TTCACATTTAAA-ATACGGTGGGATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAGATA-TGTGGAATCAGCACTTAGCAACC
* * *
69809630 ACTAATGAATCAGGGAATCAGCACTTAGCAACTCCTTG
65 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
*
69809668 GGGGAATCAGCACTTAGCAACCCCCTTT-ATATTCAAAGATACTGTGGAATCAGCACTTAGCAAC
1 GGGGAATCAGCACTTAGCAA-CCCCTTTCACATTCAAAGATA-TGTGGAATCAGCACTTAGCAAC
** * *
69809732 GGCCAATGAGTCGGGGAATCAGCACTTAGCAATCCCTT-
64 CACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
69809770 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
69809794 CTTTATATTC
Statistics
Matches: 200, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
101 78 0.39
102 43 0.22
103 79 0.40
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.21
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAGATATGTGGAATCAGCACTTAGCAACCA
CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
Found at i:69809628 original size:101 final size:102
Alignment explanation
Indices: 69809464--69809793 Score: 457
Period size: 101 Copynumber: 3.2 Consensus size: 102
69809454 CCAGTGATTT
* * *
69809464 GGGGAACCAGCACTTAGCAACCCCTTTCACATTCAAAGATATGATGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCC-TTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
* * *
69809529 ACCAATGATTCGGGGAATCAACACTTAGCAGCCCCTTG
65 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
* * *
69809567 GGGGAATCAGTACTTAGCAACCCCTTCACATTTAAA-ATACGGTGGGATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACCA
* * *
69809631 CTAATGAATCAGGGAATCAGCACTTAGCAACTCCTTG
66 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
* * * *
69809668 GGGGAATCAGCACTTAGCAACCCCCTTTATATTCAAAGATACTGTGGAATCAGCACTTAGCAACG
1 GGGGAATCAGCACTTAGCAA-CCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
* * *
69809733 GCCAATGAGTCGGGGAATCAGCACTTAGCAATCCCTT-
65 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
69809770 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
69809794 CTTTATATTC
Statistics
Matches: 200, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
101 79 0.40
102 44 0.22
103 77 0.38
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.21
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
Found at i:69815544 original size:37 final size:37
Alignment explanation
Indices: 69815503--69815597 Score: 111
Period size: 37 Copynumber: 2.6 Consensus size: 37
69815493 AATAAATTTA
* * * **
69815503 ATATTAAATTTAATTTCATATTTATCTATATAGTATT
1 ATATTAAATTTAATTTAATATTTACCTAGATAACATT
*
69815540 ATATTAATTTTAATTTAATATTTACCTAGATAACATT
1 ATATTAAATTTAATTTAATATTTACCTAGATAACATT
*
69815577 GTATT-AATTTAATATTAATAT
1 ATATTAAATTTAAT-TTAATAT
69815598 GAGGTATTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
36 7 0.14
37 42 0.86
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (37 bp):
ATATTAAATTTAATTTAATATTTACCTAGATAACATT
Found at i:69815587 original size:61 final size:60
Alignment explanation
Indices: 69815541--69815656 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 60
69815531 TATAGTATTA
*
69815541 TATTAATTTTAATTTAATATTTACCTAGATAACATTGTATTAATTTAATATTAATATGAGG
1 TATTAAATTTAATTTAATATTTACCTAGATAACATTGTATTAATTTAATATTAATATGA-G
* * * * *
69815602 TATTAAATTTAATTTAATATTTATCTTGATAATATTTTATTCATGTT-ATATTAAT
1 TATTAAATTTAATTTAATATTTACCTAGATAACATTGTATTAAT-TTAATATTAAT
69815657 GTGATTAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
61 46 0.96
62 2 0.04
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (60 bp):
TATTAAATTTAATTTAATATTTACCTAGATAACATTGTATTAATTTAATATTAATATGAG
Found at i:69818695 original size:17 final size:17
Alignment explanation
Indices: 69818673--69818706 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
69818663 CACTAACATT
*
69818673 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
69818690 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
69818707 TGCACTAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:69819205 original size:21 final size:21
Alignment explanation
Indices: 69819181--69819223 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
69819171 TTGTTCACAA
69819181 CTTCAACAA-AGACTTCCTCCT
1 CTTCAACAACA-ACTTCCTCCT
*
69819202 CTTCCACAACAACTTCCTCCT
1 CTTCAACAACAACTTCCTCCT
69819223 C
1 C
69819224 AACAACAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.26, C:0.44, G:0.02, T:0.28
Consensus pattern (21 bp):
CTTCAACAACAACTTCCTCCT
Found at i:69821419 original size:31 final size:31
Alignment explanation
Indices: 69821381--69821442 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
69821371 CAGCTTCATA
69821381 GTCCATGTTCA-TTGGCTTAATTGCCCACATT
1 GTCCATGTTCACTT-GCTTAATTGCCCACATT
69821412 GTCCATGTTCACTTGCTTAATTGCCCACATT
1 GTCCATGTTCACTTGCTTAATTGCCCACATT
69821443 ACTTTGTGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.39
Consensus pattern (31 bp):
GTCCATGTTCACTTGCTTAATTGCCCACATT
Found at i:69825348 original size:21 final size:20
Alignment explanation
Indices: 69825324--69825372 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
69825314 ATTGTGGCTA
69825324 CATCTGATTCTAG-TGTGGATG
1 CATCTGATT-T-GTTGTGGATG
*
69825345 CATCTGGCTTTGTTGTGGATG
1 CATCT-GATTTGTTGTGGATG
69825366 CATCTGA
1 CATCTGA
69825373 ATGTGTTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
20 2 0.08
21 19 0.79
22 3 0.12
ACGTcount: A:0.16, C:0.16, G:0.29, T:0.39
Consensus pattern (20 bp):
CATCTGATTTGTTGTGGATG
Found at i:69825379 original size:21 final size:21
Alignment explanation
Indices: 69825337--69825380 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
69825327 CTGATTCTAG
** *
69825337 TGTGGATGCATCTGGCTTTGT
1 TGTGGATGCATCTGAATGTGT
69825358 TGTGGATGCATCTGAATGTGT
1 TGTGGATGCATCTGAATGTGT
69825379 TG
1 TG
69825381 ATTGTAGTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.11, G:0.34, T:0.41
Consensus pattern (21 bp):
TGTGGATGCATCTGAATGTGT
Found at i:69825392 original size:21 final size:21
Alignment explanation
Indices: 69825368--69825407 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
69825358 TGTGGATGCA
69825368 TCTGAA-TGTGTTGATTGTAGT
1 TCTGAAGT-TGTTGATTGTAGT
*
69825389 TCTGCAGTTGTTGATTGTA
1 TCTGAAGTTGTTGATTGTA
69825408 ATTCCCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.17, C:0.07, G:0.28, T:0.47
Consensus pattern (21 bp):
TCTGAAGTTGTTGATTGTAGT
Found at i:69836829 original size:9 final size:9
Alignment explanation
Indices: 69836815--69836845 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
69836805 GTTAAACGAA
69836815 TCGAGTTAT
1 TCGAGTTAT
*
69836824 TCGAGTTAA
1 TCGAGTTAT
69836833 TCGAGTTAT
1 TCGAGTTAT
69836842 TCGA
1 TCGA
69836846 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:69836916 original size:9 final size:9
Alignment explanation
Indices: 69836899--69836935 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
69836889 TAAGTTTTCG
69836899 AATTCGAAT
1 AATTCGAAT
*
69836908 AACTCGAAT
1 AATTCGAAT
69836917 AATTCGAAT
1 AATTCGAAT
69836926 AATTCGAAT
1 AATTCGAAT
69836935 A
1 A
69836936 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:69844739 original size:50 final size:50
Alignment explanation
Indices: 69844679--69844861 Score: 188
Period size: 50 Copynumber: 3.6 Consensus size: 50
69844669 TATCATTCGA
* *
69844679 TACACGTAGTAGCCTTCACATAGTACTATACATGTGATCAAACTTTCCAG
1 TACACGTAGTAGCCTTCACATAGTACTACACATGTGATCAAACTTTCCGG
* * * * * *
69844729 TTCACGTAGTAGCCTGCACATAGTACTAGACACGTGATCGAAGCTATCCGG
1 TACACGTAGTAGCCTTCACATAGTACTACACATGTGATC-AAACTTTCCGG
* * * * *** *
69844780 TACGCATAGTAGCCTGT-ACATAGTACTACACATGAGACCTTTCATTCCGG
1 TACACGTAGTAGCCT-TCACATAGTACTACACATGTGATCAAACTTTCCGG
*
69844830 TACACGTAGTAGCCTACACATAGTACTACACA
1 TACACGTAGTAGCCTTCACATAGTACTACACA
69844862 NNNNNNNNNN
Statistics
Matches: 107, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
50 69 0.64
51 38 0.36
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TACACGTAGTAGCCTTCACATAGTACTACACATGTGATCAAACTTTCCGG
Found at i:69849322 original size:20 final size:20
Alignment explanation
Indices: 69849299--69849342 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
69849289 TATTTTTCAT
69849299 AAAAATAATTAA-AAATAAGA
1 AAAAATAA-TAACAAATAAGA
* *
69849319 AAAAATTATAACAAATCAGA
1 AAAAATAATAACAAATAAGA
69849339 AAAA
1 AAAA
69849343 TTATAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.18
Consensus pattern (20 bp):
AAAAATAATAACAAATAAGA
Found at i:69849372 original size:14 final size:15
Alignment explanation
Indices: 69849348--69849377 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
69849338 AAAAATTATA
69849348 AAAAGTATTAAAAAT
1 AAAAGTATTAAAAAT
69849363 AAAA-TATTAAAAAT
1 AAAAGTATTAAAAAT
69849377 A
1 A
69849378 TATTGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AAAAGTATTAAAAAT
Found at i:69849525 original size:19 final size:20
Alignment explanation
Indices: 69849491--69849536 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
69849481 TTAGAATTTT
* *
69849491 ATAAAAACGTATTAAAATTC
1 ATAAAAACCTATTAAAAATC
*
69849511 TTAAAAACCTA-TAAAAATC
1 ATAAAAACCTATTAAAAATC
69849530 ATAAAAA
1 ATAAAAA
69849537 ATTATAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.61, C:0.11, G:0.02, T:0.26
Consensus pattern (20 bp):
ATAAAAACCTATTAAAAATC
Found at i:69863962 original size:23 final size:23
Alignment explanation
Indices: 69863932--69863979 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
69863922 TATATAGGAC
69863932 TTAAAAAATTATGGAAGAATGAG
1 TTAAAAAATTATGGAAGAATGAG
69863955 TTAAAAAATTATGGAAGAATGAG
1 TTAAAAAATTATGGAAGAATGAG
69863978 TT
1 TT
69863980 CATGTTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (23 bp):
TTAAAAAATTATGGAAGAATGAG
Found at i:69867665 original size:69 final size:70
Alignment explanation
Indices: 69867553--69867692 Score: 273
Period size: 69 Copynumber: 2.0 Consensus size: 70
69867543 TCTCCCTTAA
69867553 TTTTAGGGATTTACAAGATAAGCCTTATCAAATCTAATCTAATCTTTACAAGATATGATTCCCTC
1 TTTTAGGGATTTACAAGATAAGCCTTATCAAATCTAATCTAATCTTTACAAGATATGATTCCCTC
69867618 TATCT
66 TATCT
69867623 TTTTAGGGA-TTACAAGATAAGCCTTATCAAATCTAATCTAATCTTTACAAGATATGATTCCCTC
1 TTTTAGGGATTTACAAGATAAGCCTTATCAAATCTAATCTAATCTTTACAAGATATGATTCCCTC
69867687 TATCT
66 TATCT
69867692 T
1 T
69867693 CTAAGATTAG
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
69 61 0.87
70 9 0.13
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.39
Consensus pattern (70 bp):
TTTTAGGGATTTACAAGATAAGCCTTATCAAATCTAATCTAATCTTTACAAGATATGATTCCCTC
TATCT
Found at i:69870311 original size:24 final size:24
Alignment explanation
Indices: 69870284--69870332 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
69870274 CAATTTTATT
*
69870284 TTATATAATATACATAATTCATAC
1 TTATATAATATACATAATCCATAC
*
69870308 TTATATAATATACATGATCCATAC
1 TTATATAATATACATAATCCATAC
69870332 T
1 T
69870333 AAAAATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (24 bp):
TTATATAATATACATAATCCATAC
Found at i:69873384 original size:46 final size:46
Alignment explanation
Indices: 69873312--69873400 Score: 169
Period size: 46 Copynumber: 1.9 Consensus size: 46
69873302 GCAAAATGTG
*
69873312 AAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGCA
1 AAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAGTTGCA
69873358 AAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAGTT
1 AAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAGTT
69873401 ATAGCAATGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (46 bp):
AAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAGTTGCA
Found at i:69873914 original size:68 final size:68
Alignment explanation
Indices: 69873805--69873941 Score: 238
Period size: 68 Copynumber: 2.0 Consensus size: 68
69873795 TGTTAAACAA
*
69873805 CTTTTTGGATTTATATGGCATGTATAGGAAATTGAAGTAAAAAGTAATAGAATGAATGACTAAGT
1 CTTTTTGGATTTATATGGCATGTATAGGAAATTGAAATAAAAAGTAATAGAATGAATGACTAAGT
69873870 ATG
66 ATG
* * *
69873873 CTTTTTGGATTTATATGGCATGTATAGGGAATTGAAATAAAAAGTATTAGTATGAATGACTAAGT
1 CTTTTTGGATTTATATGGCATGTATAGGAAATTGAAATAAAAAGTAATAGAATGAATGACTAAGT
69873938 ATG
66 ATG
69873941 C
1 C
69873942 AAAATAAATT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (68 bp):
CTTTTTGGATTTATATGGCATGTATAGGAAATTGAAATAAAAAGTAATAGAATGAATGACTAAGT
ATG
Found at i:69877424 original size:28 final size:28
Alignment explanation
Indices: 69877384--69877441 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
69877374 GTACTTATGC
69877384 TTTAAATTATGCAAATTGAAATTGTAAG
1 TTTAAATTATGCAAATTGAAATTGTAAG
69877412 TTTAAATTATGCAAATTGAAATTGTAAG
1 TTTAAATTATGCAAATTGAAATTGTAAG
69877440 TT
1 TT
69877442 ATGTTTTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.41
Consensus pattern (28 bp):
TTTAAATTATGCAAATTGAAATTGTAAG
Found at i:69878761 original size:41 final size:41
Alignment explanation
Indices: 69878716--69878820 Score: 129
Period size: 41 Copynumber: 2.6 Consensus size: 41
69878706 AAGCTTGATA
* *
69878716 AAGCCTACTAGGCATAAAGCCTGATAATATACACCGACACG
1 AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGACACG
* * * * * *
69878757 AAGCCCGCTAGGCACAACGCCTGATAATCTACACTGGCATG
1 AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGACACG
*
69878798 AAGCTTGCTAGGCACAAAGCCTG
1 AAGCCTGCTAGGCACAAAGCCTG
69878821 CTAGGTACAA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.33, C:0.29, G:0.21, T:0.17
Consensus pattern (41 bp):
AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGACACG
Found at i:69878817 original size:16 final size:16
Alignment explanation
Indices: 69878798--69878836 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
69878788 CACTGGCATG
*
69878798 AAGCTTGCTAGGCACA
1 AAGCCTGCTAGGCACA
*
69878814 AAGCCTGCTAGGTACA
1 AAGCCTGCTAGGCACA
69878830 AAGCCTG
1 AAGCCTG
69878837 GTAATATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.18
Consensus pattern (16 bp):
AAGCCTGCTAGGCACA
Found at i:69882570 original size:16 final size:16
Alignment explanation
Indices: 69882549--69882593 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
69882539 TTTGTAAGTT
69882549 CAGGCTTTGTGCCTAG
1 CAGGCTTTGTGCCTAG
69882565 CAGGCTTTGTGCCTAG
1 CAGGCTTTGTGCCTAG
*
69882581 CAGGCTTTATGCC
1 CAGGCTTTGTGCC
69882594 AGTGAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.13, C:0.27, G:0.29, T:0.31
Consensus pattern (16 bp):
CAGGCTTTGTGCCTAG
Found at i:69882622 original size:41 final size:41
Alignment explanation
Indices: 69882565--69882720 Score: 195
Period size: 41 Copynumber: 3.8 Consensus size: 41
69882555 TTGTGCCTAG
* *
69882565 CAGGCTTTGTGCCTAGCAGGCTTTATGCCAGTGAATTATAT
1 CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATAT
69882606 CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATAT
1 CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATAT
* * * * * * *
69882647 CAGACTTTATGTCTAGTAGGCTTTGTTCCGGTGAAATGTAT
1 CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATAT
** * *
69882688 TGGGCTTTGTGCGTAGCAGGCTTTATGCCGGTG
1 CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTG
69882721 TTTTATACAA
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 97 1.00
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (41 bp):
CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATAT
Found at i:69883526 original size:18 final size:17
Alignment explanation
Indices: 69883498--69883534 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
69883488 TTCGAAAGTA
69883498 ATATGTGTATTATATAT
1 ATATGTGTATTATATAT
*
69883515 ATATGATGTATTATGTAT
1 ATATG-TGTATTATATAT
69883533 AT
1 AT
69883535 GCTGCCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (17 bp):
ATATGTGTATTATATAT
Found at i:69883583 original size:113 final size:112
Alignment explanation
Indices: 69883465--69883691 Score: 420
Period size: 113 Copynumber: 2.0 Consensus size: 112
69883455 ATTGTTGTAT
69883465 AAATTAATTATATTTAAGCC-TATTTCGAAAGTAATATGTGTATTATATATATATGATGTATTAT
1 AAATTAATTATATTTAAGCCATATTTCGAAAG--ATATGTGTATTATATATATATGATGTATTAT
69883529 GTATATGCTGCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAA
64 GTATATGCTGCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAA
69883578 AAATTAATTATATTTAAGCCTATATTTCGAAAGATATGTGTATTATATATATATGATGTATTATG
1 AAATTAATTATATTTAAGCC-ATATTTCGAAAGATATGTGTATTATATATATATGATGTATTATG
69883643 TATATGCTGCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAA
65 TATATGCTGCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAA
69883691 A
1 A
69883692 GTGCTGTTAA
Statistics
Matches: 112, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
113 101 0.90
115 11 0.10
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.46
Consensus pattern (112 bp):
AAATTAATTATATTTAAGCCATATTTCGAAAGATATGTGTATTATATATATATGATGTATTATGT
ATATGCTGCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAA
Found at i:69883637 original size:18 final size:17
Alignment explanation
Indices: 69883611--69883647 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
69883601 ATTTCGAAAG
69883611 ATATGTGTATTATATAT
1 ATATGTGTATTATATAT
*
69883628 ATATGATGTATTATGTAT
1 ATATG-TGTATTATATAT
69883646 AT
1 AT
69883648 GCTGCCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (17 bp):
ATATGTGTATTATATAT
Found at i:69883784 original size:137 final size:139
Alignment explanation
Indices: 69883643--69883927 Score: 450
Period size: 137 Copynumber: 2.1 Consensus size: 139
69883633 ATGTATTATG
* *
69883643 TATATGCTGCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGG
1 TATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGG
* ** *
69883708 TATGTATATGCTGCCTATTTGCTGTATATATGCTAT-TAAATTTTGGTGTA-AAAGTGCTGTTAA
66 TATGTATATGCTGCCTATTTGATGTATATAACCTATCCAAATTTTGGTGTATAAA-TGCTGTTAA
69883771 ATTTGGTAT-
130 ATTTGGTATA
69883780 TATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGG
1 TATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGG
* * *
69883845 TATGTATATGCTGCCTATTTGATGTATATAACCTGTCCAAATTTTGTTGTATAAATGCTGTTTAA
66 TATGTATATGCTGCCTATTTGATGTATATAACCTATCCAAATTTTGGTGTATAAATGCTGTTAAA
69883910 TTTGGTATA
131 TTTGGTATA
*
69883919 TAAATGCTG
1 TATATGCTG
69883928 TCCACATTGA
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
137 95 0.70
138 29 0.21
139 11 0.08
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.45
Consensus pattern (139 bp):
TATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGG
TATGTATATGCTGCCTATTTGATGTATATAACCTATCCAAATTTTGGTGTATAAATGCTGTTAAA
TTTGGTATA
Found at i:69883816 original size:68 final size:69
Alignment explanation
Indices: 69883639--69883927 Score: 447
Period size: 69 Copynumber: 4.2 Consensus size: 69
69883629 TATGATGTAT
* *
69883639 TATGTATATGCTGCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAAT
1 TATGTATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAAT
69883704 TTGG
66 TTGG
69883708 TATGTATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAAT
1 TATGTATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAAT
69883773 TTGG
66 TTGG
69883777 TAT-TATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAAT
1 TATGTATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAAT
69883841 TTGG
66 TTGG
* ** * * * *
69883845 TATGTATATGCTGCCTATTTGATGTATATAACCTGTCCAAATTTTGTTGTATAAA-TGCTGTTTA
1 TATGTATATGCTGCCTATTTGCTGTATATATGCTAT-TAAATTTTGGTGTA-AAAGTGCTGTTAA
69883909 ATTTGG
64 ATTTGG
* *
69883915 TATATAAATGCTG
1 TATGTATATGCTG
69883928 TCCACATTGA
Statistics
Matches: 206, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
68 68 0.33
69 98 0.48
70 37 0.18
71 3 0.01
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.45
Consensus pattern (69 bp):
TATGTATATGCTGCCTATTTGCTGTATATATGCTATTAAATTTTGGTGTAAAAGTGCTGTTAAAT
TTGG
Found at i:69886137 original size:42 final size:42
Alignment explanation
Indices: 69886078--69886168 Score: 182
Period size: 42 Copynumber: 2.2 Consensus size: 42
69886068 ATTTTCAAAC
69886078 GAAAATAGATGAATCTATAAAAGAGTTGACCACGTCAATTGA
1 GAAAATAGATGAATCTATAAAAGAGTTGACCACGTCAATTGA
69886120 GAAAATAGATGAATCTATAAAAGAGTTGACCACGTCAATTGA
1 GAAAATAGATGAATCTATAAAAGAGTTGACCACGTCAATTGA
69886162 GAAAATA
1 GAAAATA
69886169 AAATCACAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (42 bp):
GAAAATAGATGAATCTATAAAAGAGTTGACCACGTCAATTGA
Found at i:69888117 original size:95 final size:95
Alignment explanation
Indices: 69887990--69888192 Score: 237
Period size: 95 Copynumber: 2.1 Consensus size: 95
69887980 TATGGAAATA
* * * * * * * *
69887990 AAAAATAAATTAGGAGTGTGTTGGGTTGAGTAACCATGGTGAGGTGCTTGGGTTGTCATTCCACT
1 AAAAATAAATTAAGAGCGTGTCGGGCTAAGTAACCAGGGTGAGGTGCTTGAGTTGTCATCCCACT
* * *
69888055 TCGCGTCAAAAGGGCTAATACATTCTTAAAC
66 TCACATCAAAAGGGCCAATACATT-TTAAAC
* * *
69888086 AAAAA-AAATTAAGAGCGTGTCGGGCTAAGTAATCGGGGTGGGGTGCTTGAGTTGTCATCCCACT
1 AAAAATAAATTAAGAGCGTGTCGGGCTAAGTAACCAGGGTGAGGTGCTTGAGTTGTCATCCCACT
*
69888150 TCACATCAAAAGGGCCAATACATTTTAAAT
66 TCACATCAAAAGGGCCAATACATTTTAAAC
69888180 AAAATATATAATT
1 AAAA-ATA-AATT
69888193 TGATAAAATA
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
94 9 0.10
95 70 0.79
96 6 0.07
97 4 0.04
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.29
Consensus pattern (95 bp):
AAAAATAAATTAAGAGCGTGTCGGGCTAAGTAACCAGGGTGAGGTGCTTGAGTTGTCATCCCACT
TCACATCAAAAGGGCCAATACATTTTAAAC
Found at i:69889616 original size:6 final size:6
Alignment explanation
Indices: 69889602--69889638 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
69889592 AACTCGTCCA
*
69889602 TATTCT TATTTT TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT T
69889639 TCAGGTTAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:69892628 original size:54 final size:54
Alignment explanation
Indices: 69892516--69892629 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 54
69892506 TCGTGTCTAT
* * * * * *
69892516 GCCCGTGTAACTCATTGACTTGAGCCACACGGTCGTGTCCCAGCCTATGTCTCT
1 GCCCGTGTAACTCACTAACTTGAGCCACACGGCCATGTCACAGCCTATGTCTCA
* * * *
69892570 GCCCGTGTATCTCACTAACTTGGGTCACACGGCCATGTCACATGCC-ATGTGTCA
1 GCCCGTGTAACTCACTAACTTGAGCCACACGGCCATGTCACA-GCCTATGTCTCA
69892624 GCCCGT
1 GCCCGT
69892630 TTTGGAACTA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
54 46 0.94
55 3 0.06
ACGTcount: A:0.18, C:0.33, G:0.23, T:0.26
Consensus pattern (54 bp):
GCCCGTGTAACTCACTAACTTGAGCCACACGGCCATGTCACAGCCTATGTCTCA
Found at i:69893715 original size:41 final size:41
Alignment explanation
Indices: 69893647--69893855 Score: 233
Period size: 41 Copynumber: 5.1 Consensus size: 41
69893637 TACTGGCACA
* * * * * *
69893647 AAGCCTGCTAGACTCAATGCCTAATAATATACACCGACTCA
1 AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGACACG
*
69893688 AAGCCTGCTAGGCACAAAGCCTGATAATCTACACC-AGCACG
1 AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGA-CACG
* * * * *
69893729 AAGCTTGCGAGGCACAAAGGCTGATAATATACACTGGCACG
1 AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGACACG
* *
69893770 AAGCCTGCTAGGCACAAAACCTGATAATATACACCGGCACG
1 AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGACACG
* * *
69893811 AAGCCTGCTAGGCACAAAGCCTG-TGAGTATACATCGGCACG
1 AAGCCTGCTAGGCACAAAGCCTGAT-AATATACACCGACACG
69893852 AAGC
1 AAGC
69893856 TTTTTGGACT
Statistics
Matches: 144, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 2 0.01
41 142 0.99
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (41 bp):
AAGCCTGCTAGGCACAAAGCCTGATAATATACACCGACACG
Found at i:69893857 original size:123 final size:121
Alignment explanation
Indices: 69893631--69893857 Score: 303
Period size: 123 Copynumber: 1.9 Consensus size: 121
69893621 GTTACCTAAT
* ** *
69893631 ATAATATACTGGCACAAAGCCTGCTAGACTCAATGCCTAATAATATACACCGACTCAAAGCCTGC
1 ATAATATACTGGCACAAAGCCTGCTAGACACAAAACCTAATAATATACACCGACACAAAGCCTGC
*
69893696 TAGGCACAAAGCCTGATAATCTACACCAGCACGAAGCTTGCGAGGCACAAAGGCTG
66 TAGGCACAAAGCCTGATAATATACACCAGCACGAAGCTTGCGAGGCACAAAGGCTG
* * * * *
69893752 ATAATATACACTGGCACGAAGCCTGCTAGGCACAAAACCTGATAATATACACCGGCACGAAGCCT
1 ATAATAT--ACTGGCACAAAGCCTGCTAGACACAAAACCTAATAATATACACCGACACAAAGCCT
* * *
69893817 GCTAGGCACAAAGCCTG-TGAGTATACATCGGCACGAAGCTT
64 GCTAGGCACAAAGCCTGAT-AATATACACCAGCACGAAGCTT
69893858 TTTGGACTCA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
121 7 0.08
122 1 0.01
123 82 0.91
ACGTcount: A:0.35, C:0.27, G:0.20, T:0.18
Consensus pattern (121 bp):
ATAATATACTGGCACAAAGCCTGCTAGACACAAAACCTAATAATATACACCGACACAAAGCCTGC
TAGGCACAAAGCCTGATAATATACACCAGCACGAAGCTTGCGAGGCACAAAGGCTG
Found at i:69904415 original size:4 final size:4
Alignment explanation
Indices: 69904408--69904438 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
69904398 TTATTTAGGG
*
69904408 TTTA TTTA TTTA CTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
69904439 TTAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:69905168 original size:13 final size:12
Alignment explanation
Indices: 69905152--69905182 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
69905142 TATTTTAATA
69905152 TATTATCATTTAT
1 TATTATCA-TTAT
69905165 TATTATCATTAT
1 TATTATCATTAT
69905177 TATTAT
1 TATTAT
69905183 TAACGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (12 bp):
TATTATCATTAT
Found at i:69951270 original size:20 final size:20
Alignment explanation
Indices: 69951234--69951280 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 20
69951224 AAAATAAATA
69951234 AATAAGATAAATAATTAGAAT
1 AATAA-ATAAATAATTAGAAT
69951255 AATAAATAAA-AGATTAGAAT
1 AATAAATAAATA-ATTAGAAT
69951275 AATAAA
1 AATAAA
69951281 GAAGAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 19 0.76
21 5 0.20
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (20 bp):
AATAAATAAATAATTAGAAT
Found at i:69952626 original size:5 final size:4
Alignment explanation
Indices: 69952588--69952631 Score: 63
Period size: 4 Copynumber: 10.8 Consensus size: 4
69952578 AAGTCAAACA
69952588 AAAT AAAT AAAT AAAT AAAT AAGAT AAAT AAAT AGAAT -AAT AAA
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT A-AAT AAAT AAA
69952632 GAAGAAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 3 0.08
4 27 0.73
5 7 0.19
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:69952629 original size:25 final size:24
Alignment explanation
Indices: 69952587--69952643 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 24
69952577 CAAGTCAAAC
*
69952587 AAAATAAATAAATAAATAAATAAG
1 AAAATAAATAAATAAATAAAGAAG
69952611 ATAAATAAATAGAAT-AATAAAGAAG
1 A-AAATAAATA-AATAAATAAAGAAG
69952636 AAAATAAA
1 AAAATAAA
69952644 GAAGATAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 8 0.27
25 19 0.63
26 3 0.10
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (24 bp):
AAAATAAATAAATAAATAAAGAAG
Found at i:69952641 original size:12 final size:12
Alignment explanation
Indices: 69952587--69952648 Score: 56
Period size: 12 Copynumber: 5.1 Consensus size: 12
69952577 CAAGTCAAAC
*
69952587 AAAATAAATAA-
1 AAAATAAAGAAG
*
69952598 ATAAATAAATAAG
1 A-AAATAAAGAAG
*
69952611 ATAAATAAA-TAG
1 A-AAATAAAGAAG
69952623 AATAATAAAGAAG
1 AA-AATAAAGAAG
69952636 AAAATAAAGAAG
1 AAAATAAAGAAG
69952648 A
1 A
69952649 TAGATGGAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
11 2 0.04
12 30 0.67
13 13 0.29
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.18
Consensus pattern (12 bp):
AAAATAAAGAAG
Found at i:69953698 original size:12 final size:11
Alignment explanation
Indices: 69953662--69953702 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
69953652 TAGTAATAAT
69953662 ATAATAGCAAA
1 ATAATAGCAAA
* *
69953673 ATGACAGCAAA
1 ATAATAGCAAA
69953684 ATAATAGCAAAA
1 ATAATAGC-AAA
69953696 ATAATAG
1 ATAATAG
69953703 GCAGATTCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.61, C:0.10, G:0.12, T:0.17
Consensus pattern (11 bp):
ATAATAGCAAA
Found at i:69957131 original size:42 final size:41
Alignment explanation
Indices: 69957072--69957174 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 41
69957062 NNNNNNNNTG
*
69957072 TTTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTA
1 TTTCACTGGCATTAAGCCTGCTAGACGTAAAGTCTGAAA-TA
* *
69957114 TTTCACTGGCATTAAGCCTGCTAGATGTAAAGTCTGAAATG
1 TTTCACTGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATA
* *
69957155 TTTCACTGGCAATAAACCTG
1 TTTCACTGGCATTAAGCCTG
69957175 ATAGGCACTG
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 19 0.34
42 37 0.66
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (41 bp):
TTTCACTGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATA
Found at i:69959860 original size:28 final size:28
Alignment explanation
Indices: 69959774--69959871 Score: 81
Period size: 28 Copynumber: 3.5 Consensus size: 28
69959764 AAATTAGTGC
**
69959774 GCTTATCA-TATTATTACGCACTTCAGT
1 GCTTATCATTATTATTTTGCACTTCAGT
* ** * **
69959801 GCTTATCGTTGTAAAAATTTGCACTTTTGT
1 GCTTATC-AT-TATTATTTTGCACTTCAGT
*
69959831 GCTTATCATTATTATTTTGCACTTCGGT
1 GCTTATCATTATTATTTTGCACTTCAGT
*
69959859 GCTTATCGTTATT
1 GCTTATCATTATT
69959872 TGCACTTTGT
Statistics
Matches: 53, Mismatches: 15, Indels: 5
0.73 0.21 0.07
Matches are distributed among these distances:
27 7 0.13
28 26 0.49
29 1 0.02
30 19 0.36
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.47
Consensus pattern (28 bp):
GCTTATCATTATTATTTTGCACTTCAGT
Found at i:69960509 original size:113 final size:113
Alignment explanation
Indices: 69960368--69960583 Score: 432
Period size: 113 Copynumber: 1.9 Consensus size: 113
69960358 ATGGCATATT
69960368 TTGTAAGCTTTTGAAAGGAATTTATAATAGCTTAACATATGCATGCATATATAATGTTATTATAT
1 TTGTAAGCTTTTGAAAGGAATTTATAATAGCTTAACATATGCATGCATATATAATGTTATTATAT
69960433 AGATTTTGTGGTGAATTTTAATGAGTTTGAGGGTAATTTCTAATGGCA
66 AGATTTTGTGGTGAATTTTAATGAGTTTGAGGGTAATTTCTAATGGCA
69960481 TTGTAAGCTTTTGAAAGGAATTTATAATAGCTTAACATATGCATGCATATATAATGTTATTATAT
1 TTGTAAGCTTTTGAAAGGAATTTATAATAGCTTAACATATGCATGCATATATAATGTTATTATAT
69960546 AGATTTTGTGGTGAATTTTAATGAGTTTGAGGGTAATT
66 AGATTTTGTGGTGAATTTTAATGAGTTTGAGGGTAATT
69960584 GAATTGGTTT
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 103 1.00
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (113 bp):
TTGTAAGCTTTTGAAAGGAATTTATAATAGCTTAACATATGCATGCATATATAATGTTATTATAT
AGATTTTGTGGTGAATTTTAATGAGTTTGAGGGTAATTTCTAATGGCA
Found at i:69973907 original size:17 final size:19
Alignment explanation
Indices: 69973867--69973907 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
69973857 TTAAATTTTT
69973867 TTAA-ATAAAATCATATTA
1 TTAATATAAAATCATATTA
*
69973885 TAAATATAAAATCA-A-TA
1 TTAATATAAAATCATATTA
69973902 TTAATA
1 TTAATA
69973908 CATACAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 7 0.35
18 4 0.20
19 9 0.45
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TTAATATAAAATCATATTA
Found at i:69986304 original size:26 final size:26
Alignment explanation
Indices: 69986269--69986344 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
69986259 ACACGTCAGA
*
69986269 AAATAGAAGCCTTTGTGGCGTATCTG
1 AAATGGAAGCCTTTGTGGCGTATCTG
* *
69986295 AAATGGAAGCCTTAGTGGCGTAACTG
1 AAATGGAAGCCTTTGTGGCGTATCTG
* *
69986321 AAATGGAAGCCATTGTAGCG-ATCT
1 AAATGGAAGCCTTTGTGGCGTATCT
69986345 ATGGAAAGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 3 0.07
26 40 0.93
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (26 bp):
AAATGGAAGCCTTTGTGGCGTATCTG
Found at i:69988041 original size:71 final size:68
Alignment explanation
Indices: 69987885--69988046 Score: 182
Period size: 72 Copynumber: 2.3 Consensus size: 68
69987875 CACCGTTTCC
* * * *
69987885 ATTAAAAAGTTAATTTTAATCCATATTGACTAGAGAACACTCTCATAGTTCACTTCTTCGCTATT
1 ATTAAAAAGTTAATTTTAATCCAAATTGACTAGAGAACACTCCCATAGCTCACTTCTTCACTATT
69987950 TTT
66 TTT
* * *
69987953 ATTAAAAAAAAGTTAATTTTAATCTTAAATTGACTAGAGAATACTCCCATAGCTCACTTTTTTTT
1 ATT---AAAAAGTTAATTTTAATC-CAAATTGACTAGAGAACACTCCCATAGCTCAC---TTCTT
*
69988018 TACTATTTTT
59 CACTATTTTT
69988028 ATTAAAAA-TTAATTTTAAT
1 ATTAAAAAGTTAATTTTAAT
69988047 TCCTTAAAAC
Statistics
Matches: 79, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
68 3 0.04
71 29 0.37
72 32 0.41
75 15 0.19
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (68 bp):
ATTAAAAAGTTAATTTTAATCCAAATTGACTAGAGAACACTCCCATAGCTCACTTCTTCACTATT
TTT
Found at i:69989375 original size:20 final size:20
Alignment explanation
Indices: 69989347--69989436 Score: 72
Period size: 20 Copynumber: 4.5 Consensus size: 20
69989337 ATGTGCAATG
* *
69989347 TATCAATACAACTCCACTTC
1 TATCCATACAAGTCCACTTC
* ** * *
69989367 TATCCATACATGTTAAGTTT
1 TATCCATACAAGTCCACTTC
* * *
69989387 TATCTATACAAATCCATTTC
1 TATCCATACAAGTCCACTTC
* *
69989407 TACCCATACAAGTTCACTTC
1 TATCCATACAAGTCCACTTC
69989427 TATCCATACA
1 TATCCATACA
69989437 TCTTGTAAGT
Statistics
Matches: 50, Mismatches: 20, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (20 bp):
TATCCATACAAGTCCACTTC
Found at i:69989436 original size:40 final size:40
Alignment explanation
Indices: 69989347--69989436 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
69989337 ATGTGCAATG
* * * * *
69989347 TATCAATACAACTCCACTTCTATCCATACATGTTAAGTTT
1 TATCAATACAAATCCACTTCTACCCATACAAGTTAACTTC
* * *
69989387 TATCTATACAAATCCATTTCTACCCATACAAGTTCACTTC
1 TATCAATACAAATCCACTTCTACCCATACAAGTTAACTTC
*
69989427 TATCCATACA
1 TATCAATACA
69989437 TCTTGTAAGT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (40 bp):
TATCAATACAAATCCACTTCTACCCATACAAGTTAACTTC
Found at i:69996783 original size:8 final size:8
Alignment explanation
Indices: 69996770--69996796 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
69996760 TTTTATCAGC
69996770 TTTTATTA
1 TTTTATTA
69996778 TTTTATTA
1 TTTTATTA
69996786 TTTTATTA
1 TTTTATTA
69996794 TTT
1 TTT
69996797 CAAAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTATTA
Found at i:70000981 original size:40 final size:40
Alignment explanation
Indices: 70000890--70000981 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
70000880 TGGAAATGGT
* * *
70000890 TATATGAAGTGTTTATATGAATCAGTTATATAAAAATAGA
1 TATATGAAATGGTAATATGAATCAGTTATATAAAAATAGA
* *
70000930 TATATGGAATGGTAATATGAATCAGTTATATGAAAATAGA
1 TATATGAAATGGTAATATGAATCAGTTATATAAAAATAGA
70000970 TATATGAAATGG
1 TATATGAAATGG
70000982 AACATTTGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.45, C:0.02, G:0.18, T:0.35
Consensus pattern (40 bp):
TATATGAAATGGTAATATGAATCAGTTATATAAAAATAGA
Found at i:70001165 original size:60 final size:60
Alignment explanation
Indices: 70001072--70001196 Score: 241
Period size: 60 Copynumber: 2.1 Consensus size: 60
70001062 TACTTGCAAT
70001072 ATTTTTGACATGATAAAGTTATTATATGTTTTGCATATGTGAACTCACTAACCTTGTAAG
1 ATTTTTGACATGATAAAGTTATTATATGTTTTGCATATGTGAACTCACTAACCTTGTAAG
*
70001132 ATTTTTGACATGATAAAGTTATTATATGTTTTGCATATGTGAACTCACTAACCTTGTAAT
1 ATTTTTGACATGATAAAGTTATTATATGTTTTGCATATGTGAACTCACTAACCTTGTAAG
70001192 ATTTT
1 ATTTT
70001197 CGGTGTGTAT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 64 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (60 bp):
ATTTTTGACATGATAAAGTTATTATATGTTTTGCATATGTGAACTCACTAACCTTGTAAG
Found at i:70004837 original size:25 final size:25
Alignment explanation
Indices: 70004808--70004923 Score: 119
Period size: 25 Copynumber: 4.6 Consensus size: 25
70004798 ACGGACACAC
*
70004808 CACAGCTCGTATGAGCTTACTGATT
1 CACAGCTCGTATGAGCTTACCGATT
* *
70004833 TACAGCTCGTGA-GAGCTTATCGATT
1 CACAGCTCGT-ATGAGCTTACCGATT
* * *
70004858 CCCAGTTCGTATAAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATT
* *
70004883 CACAGCTCGTGA-GAGCATACCAATT
1 CACAGCTCGT-ATGAGCTTACCGATT
*
70004908 CATAGCTCGTATGAGC
1 CACAGCTCGTATGAGC
70004924 ATACATGTAT
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
24 2 0.03
25 69 0.95
26 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTACCGATT
Found at i:70004918 original size:50 final size:50
Alignment explanation
Indices: 70004808--70004919 Score: 143
Period size: 50 Copynumber: 2.2 Consensus size: 50
70004798 ACGGACACAC
* * * * * *
70004808 CACAGCTCGTATGAGCTTACTGATTTACAGCTCGTGAGAGCTTATCGATT
1 CACAGCTCGTATAAGCTTACCGATTCACAGCTCGTGAGAGCATACCAATT
* *
70004858 CCCAGTTCGTATAAGCTTACCGATTCACAGCTCGTGAGAGCATACCAATT
1 CACAGCTCGTATAAGCTTACCGATTCACAGCTCGTGAGAGCATACCAATT
*
70004908 CATAGCTCGTAT
1 CACAGCTCGTAT
70004920 GAGCATACAT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (50 bp):
CACAGCTCGTATAAGCTTACCGATTCACAGCTCGTGAGAGCATACCAATT
Found at i:70015453 original size:12 final size:12
Alignment explanation
Indices: 70015438--70015471 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
70015428 TTCTTTTACC
70015438 ATATTTATTATT
1 ATATTTATTATT
70015450 ATATTTATTATT
1 ATATTTATTATT
70015462 ACTATTTATT
1 A-TATTTATT
70015472 TATGTATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (12 bp):
ATATTTATTATT
Found at i:70017005 original size:24 final size:24
Alignment explanation
Indices: 70016930--70017010 Score: 68
Period size: 24 Copynumber: 3.6 Consensus size: 24
70016920 TGTTCAACCT
*
70016930 TTCACCTTTCATTTTCCTTAACAT-
1 TTCACCTTTCATCTTCCTTAAC-TC
*
70016954 TCCACCTTTCA---T-CTT-AC-C
1 TTCACCTTTCATCTTCCTTAACTC
*
70016972 TTCTATCTTTCATCTTCCTTAACTC
1 TTC-ACCTTTCATCTTCCTTAACTC
70016997 TTCACCTTTCATCT
1 TTCACCTTTCATCT
70017011 CTTTATAACA
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
18 2 0.04
19 9 0.20
20 3 0.07
21 1 0.02
22 1 0.02
23 3 0.07
24 22 0.49
25 4 0.09
ACGTcount: A:0.17, C:0.35, G:0.00, T:0.48
Consensus pattern (24 bp):
TTCACCTTTCATCTTCCTTAACTC
Found at i:70022576 original size:45 final size:45
Alignment explanation
Indices: 70022333--70022578 Score: 233
Period size: 45 Copynumber: 5.5 Consensus size: 45
70022323 CCTGCATTAG
* * * * *
70022333 GGAAACATCTTGTTTCCTCTGTCCATATCCTGTTGCTAGCATCAA
1 GGAAACTTCTTGTTTCCTGTATCCATATCCTGTTTCTGGCATCAA
* * * * *
70022378 GGAAACTTCTTATTTCCTATATCTATATCCTGTTGCTAGCATCAA
1 GGAAACTTCTTGTTTCCTGTATCCATATCCTGTTTCTGGCATCAA
* * * * *
70022423 CGAAACTTCTTGTTTCCTATATCTATATCCTGTTTATGGCACCAA
1 GGAAACTTCTTGTTTCCTGTATCCATATCCTGTTTCTGGCATCAA
* * * * * *
70022468 GGAAACTCCTTGATTCCTGTATCCATAGCATGTTTCCGGC-TCCAT
1 GGAAACTTCTTGTTTCCTGTATCCATATCCTGTTTCTGGCAT-CAA
* * * * *
70022513 GGAGACTTCTTGTTTCCTGTATCCATAGCCTGTTTCCGGCTTCAT
1 GGAAACTTCTTGTTTCCTGTATCCATATCCTGTTTCTGGCATCAA
*
70022558 GGAAACTTCTTCTTTCCTGTA
1 GGAAACTTCTTGTTTCCTGTA
70022579 CCTGTAGTTT
Statistics
Matches: 171, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
45 170 0.99
46 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (45 bp):
GGAAACTTCTTGTTTCCTGTATCCATATCCTGTTTCTGGCATCAA
Found at i:70025352 original size:9 final size:9
Alignment explanation
Indices: 70025296--70025359 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
70025286 CTCACATCCT
70025296 ATTCTCTCA
1 ATTCTCTCA
* *
70025305 AATCTCTCT
1 ATTCTCTCA
*
70025314 ATTTTCTCA
1 ATTCTCTCA
* *
70025323 ACTCTCTTA
1 ATTCTCTCA
* *
70025332 ACTCTCTAA
1 ATTCTCTCA
70025341 ATTCTCTCA
1 ATTCTCTCA
*
70025350 ATTTTCTCA
1 ATTCTCTCA
70025359 A
1 A
70025360 GCTCTTGTTC
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.25, C:0.30, G:0.00, T:0.45
Consensus pattern (9 bp):
ATTCTCTCA
Found at i:70031507 original size:20 final size:20
Alignment explanation
Indices: 70031478--70031517 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
70031468 CCAATTCAAC
*
70031478 AAATACAAATAAAATAAAAG
1 AAATAAAAATAAAATAAAAG
*
70031498 AAATAAAAATAAATTAAAAG
1 AAATAAAAATAAAATAAAAG
70031518 TTCAATAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAATAAAAG
Found at i:70031814 original size:17 final size:18
Alignment explanation
Indices: 70031792--70031827 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
70031782 AGAATAACAG
70031792 AAAAATAGAAAA-AAATA
1 AAAAATAGAAAATAAATA
*
70031809 AAAAATATAAAATAAATA
1 AAAAATAGAAAATAAATA
70031827 A
1 A
70031828 TTTTTGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (18 bp):
AAAAATAGAAAATAAATA
Found at i:70033143 original size:51 final size:51
Alignment explanation
Indices: 70033013--70033196 Score: 176
Period size: 51 Copynumber: 3.6 Consensus size: 51
70033003 NNNNNNNTGG
* * ** * * *
70033013 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGTAAT-GA
* *
70033063 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGTAAT-GA
* * ** * * * *
70033114 TCACGTGTGTAGTACTATGTGTAGGCTACTATGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGTAATGA
70033165 TCACATGTGTAGTACTATGTGCAGGCTACTAT
1 TCACATGTGTAGTACTATGTGCAGGCTACTAT
70033197 ATGAACCGAA
Statistics
Matches: 110, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
50 36 0.33
51 72 0.65
52 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGTAATGA
Found at i:70033788 original size:27 final size:27
Alignment explanation
Indices: 70033758--70033810 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
70033748 TTACAATGAG
70033758 ATAATTAATTTTTAGTGAAGAGAGGTT
1 ATAATTAATTTTTAGTGAAGAGAGGTT
70033785 ATAATTAATTTTTAGTGAAGAGAGGT
1 ATAATTAATTTTTAGTGAAGAGAGGT
70033811 CAGAACTGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (27 bp):
ATAATTAATTTTTAGTGAAGAGAGGTT
Found at i:70035584 original size:17 final size:17
Alignment explanation
Indices: 70035540--70035592 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
70035530 TTTTTATATG
*
70035540 TTATTTTAAAA-TTTGT
1 TTATTTTAAAATTTTTT
70035556 TTATCTTT--AATTTTTT
1 TTAT-TTTAAAATTTTTT
*
70035572 TTATTTTAAAATTTTTC
1 TTATTTTAAAATTTTTT
70035589 TTAT
1 TTAT
70035593 ATATATTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 5 0.16
16 12 0.39
17 14 0.45
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (17 bp):
TTATTTTAAAATTTTTT
Found at i:70035586 original size:16 final size:16
Alignment explanation
Indices: 70035540--70035592 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
70035530 TTTTTATATG
*
70035540 TTATTTTAAAATTTGT
1 TTATTTTAAAATTTTT
*
70035556 TTATCTTT-AATTTTTT
1 TTAT-TTTAAAATTTTT
70035572 TTATTTTAAAATTTTT
1 TTATTTTAAAATTTTT
70035588 CTTAT
1 -TTAT
70035593 ATATATTACA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 3 0.10
16 21 0.68
17 7 0.23
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (16 bp):
TTATTTTAAAATTTTT
Found at i:70035648 original size:26 final size:27
Alignment explanation
Indices: 70035619--70035680 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
70035609 TTTTATATGA
70035619 TTATTTTAA-CTTGCTTTGTAAATTA-T
1 TTATTTTAAGCTT-CTTTGTAAATTATT
* * *
70035645 TTATGTTAAGGTTCTTTGTATATTATT
1 TTATTTTAAGCTTCTTTGTAAATTATT
70035672 TTATTTTAA
1 TTATTTTAA
70035681 ATTATTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.60
Consensus pattern (27 bp):
TTATTTTAAGCTTCTTTGTAAATTATT
Found at i:70035701 original size:16 final size:15
Alignment explanation
Indices: 70035666--70035705 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
70035656 TTCTTTGTAT
70035666 ATTATTTTATTTTAA
1 ATTATTTTATTTTAA
70035681 ATTATTTTATATATT-A
1 ATTATTTTAT-T-TTAA
70035697 ATTATTTTA
1 ATTATTTTA
70035706 AAATTATCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.43
16 11 0.48
17 2 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTATTTTATTTTAA
Found at i:70035718 original size:27 final size:27
Alignment explanation
Indices: 70035663--70035723 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
70035653 AGGTTCTTTG
* **
70035663 TATATTATTTTATTTTAAATTATTTTA
1 TATATTATATTATTTTAAATTATCCTA
70035690 TATATTA-ATTATTTTAAAATTATCCTA
1 TATATTATATTATTTT-AAATTATCCTA
70035717 TACTATT
1 TA-TATT
70035724 TGCTTTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 7 0.24
27 18 0.62
28 4 0.14
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (27 bp):
TATATTATATTATTTTAAATTATCCTA
Found at i:70036217 original size:18 final size:17
Alignment explanation
Indices: 70036190--70036234 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
70036180 GATTATTACT
* *
70036190 CTTATATGTATTGTATTG
1 CTTATTTGTATT-TATTA
70036208 CTTATTTGTATTTATTA
1 CTTATTTGTATTTATTA
*
70036225 ATTATTTGTA
1 CTTATTTGTA
70036235 GTTCATTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.24, C:0.04, G:0.11, T:0.60
Consensus pattern (17 bp):
CTTATTTGTATTTATTA
Found at i:70041292 original size:6 final size:7
Alignment explanation
Indices: 70041275--70041324 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
70041265 AGTAGAGGAA
70041275 AAAAAAT
1 AAAAAAT
70041282 AAAAAAT
1 AAAAAAT
70041289 AAAAAAT
1 AAAAAAT
*
70041296 AAAAAAA
1 AAAAAAT
*
70041303 ACAAAAAG
1 A-AAAAAT
*
70041311 AACAAAT
1 AAAAAAT
70041318 AACAAAA
1 AA-AAAA
70041325 ACCTCTACCA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
7 27 0.75
8 9 0.25
ACGTcount: A:0.84, C:0.06, G:0.02, T:0.08
Consensus pattern (7 bp):
AAAAAAT
Found at i:70041299 original size:22 final size:22
Alignment explanation
Indices: 70041273--70041326 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
70041263 GCAGTAGAGG
* *
70041273 AAAAAAAATAAAAAATAAAAAAT
1 AAAAAAAA-CAAAAAGAAAAAAT
*
70041296 AAAAAAAACAAAAAGAACAAAT
1 AAAAAAAACAAAAAGAAAAAAT
*
70041318 AACAAAAAC
1 AAAAAAAAC
70041327 CTCTACCAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 19 0.70
23 8 0.30
ACGTcount: A:0.83, C:0.07, G:0.02, T:0.07
Consensus pattern (22 bp):
AAAAAAAACAAAAAGAAAAAAT
Found at i:70043190 original size:51 final size:51
Alignment explanation
Indices: 70043038--70043385 Score: 344
Period size: 51 Copynumber: 7.3 Consensus size: 51
70043028 TCATTATGGT
* *
70043038 GAATCTTTTTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
1 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * * *
70043089 GAATCTT-TTTCCCTAGCGTTGTAGT-----AGATTAAAGCTGAAGCCAAC
1 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * * *
70043134 GAATCTTATTTCCCTGGCGTTGTAGAGGAACAGGTTAAAGCTGAAGGCAAC
1 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * * * *
70043185 AAATCTTTTTTCCCTGGCATTGTAGTGGAAC-------A---GAAGGCAGT
1 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* *
70043226 GAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGTAGC
1 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
*
70043277 GAATCTTATTTCCCTGGCGTTGCAGT-----AGATTAAAGCTGAAGGTAGC
1 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * *
70043323 GAATCTTTTTTCCCTGGCATTGAAGTGGAA-AGATTAAAGCTGAAGGCAGC
1 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
*
70043373 AAATCTTATTTCC
1 GAATCTTATTTCC
70043386 TTAGCATAGT
Statistics
Matches: 248, Mismatches: 29, Indels: 41
0.78 0.09 0.13
Matches are distributed among these distances:
41 33 0.13
44 1 0.00
45 25 0.10
46 59 0.24
48 1 0.00
50 45 0.18
51 84 0.34
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (51 bp):
GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
Found at i:70043362 original size:188 final size:184
Alignment explanation
Indices: 70043036--70043579 Score: 622
Period size: 188 Copynumber: 3.0 Consensus size: 184
70043026 AGTCATTATG
* *
70043036 GTGAATCTTTTTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTT-TTTC
1 GTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTC
* * * * * * *
70043100 CCTAGCGTTGTAGTAGATTAAAGCTGAAGCCAACGAATCTTATTTCCCTGGCGTTGTAGAGGAAC
66 CCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCCTGGCGTTGAAGTGGAA-
* *
70043165 AGGTTAAAGCTGAAGGCAACAAATCTTTTTTCCCTGGCATTGTAGTGGAACAGAAGGCA
130 AGATTAAAGCTGAAGGCAGCAAATCTTTTTTCCCTGGC-TTGTAGT-GAACAGAA--CA
* *
70043224 GTGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGTAGCGAATCTTATTTC
1 GTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTC
* *
70043289 CCTGGCGTTGCAGTAGATTAAAGCTGAAGGTAGCGAATCTTTTTTCCCTGGCATTGAAGTGGAAA
66 CCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCCTGGCGTTGAAGTGGAAA
* *
70043354 GATTAAAGCTGAAGGCAGCAAATCTTATTT--C---C-T-TA--G--C---ATA
131 GATTAAAGCTGAAGGCAGCAAATCTTTTTTCCCTGGCTTGTAGTGAACAGAACA
* * *
70043394 GTGAATCTTATTTCCCTGGCGTTGCAGTGGGATAGATTAAAGCTGAAGGCAGTGAATCTTATTTC
1 GTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTC
* *
70043459 CCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTTTCCTTGGCGTTGCA
66 CCTGGCGTTGCAGT-----AGATTAAAGCTGAAGGCAGCGAATC--TTTTTTCCCTGGCGTTGAA
*
70043524 GT----AGATTAAAGCTAAAGGCAGCAAATCTTTTTTCCCTGGCGTTGTAGTAGAACAGA
124 GTGGAAAGATTAAAGCTGAAGGCAGCAAATCTTTTTTCCCTGGC-TTGTAGT-GAACAGA
70043580 TTAAAGCTGA
Statistics
Matches: 304, Mismatches: 28, Indels: 47
0.80 0.07 0.12
Matches are distributed among these distances:
170 75 0.25
172 1 0.00
173 29 0.10
175 26 0.09
177 19 0.06
178 1 0.00
180 3 0.01
181 3 0.01
183 1 0.00
184 1 0.00
186 2 0.01
188 84 0.28
189 59 0.19
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (184 bp):
GTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTC
CCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCCTGGCGTTGAAGTGGAAA
GATTAAAGCTGAAGGCAGCAAATCTTTTTTCCCTGGCTTGTAGTGAACAGAACA
Found at i:70043381 original size:96 final size:96
Alignment explanation
Indices: 70043038--70043385 Score: 429
Period size: 96 Copynumber: 3.7 Consensus size: 96
70043028 TCATTATGGT
* *
70043038 GAATCTTTTTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTT-TTTCCC
1 GAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCC
* * *
70043102 TAGCGTTGTAGTAGATTAAAGCTGAAGCCAAC
66 TGGCGTTG-AGTAGATTAAAGCTGAAGGCAGC
* * * * * *
70043134 GAATCTTATTTCCCTGGCGTTGTAGAGGAACAGGTTAAAGCTGAAGGCAACAAATCTTTTTTCCC
1 GAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCC
* ** * *
70043199 TGGCATT--GTAG-TGGAA-CAGAAGGCAGT
66 TGGCGTTGAGTAGATTAAAGCTGAAGGCAGC
* * * *
70043226 GAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGTAGCGAATCTTATTTCCC
1 GAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCC
*
70043291 TGGCGTTGCAGTAGATTAAAGCTGAAGGTAGC
66 TGGCGTTG-AGTAGATTAAAGCTGAAGGCAGC
* *
70043323 GAATCTTTTTTCCCTGGCATTGAAGTGGAA-AGATTAAAGCTGAAGGCAGCAAATCTTATTTCC
1 GAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCAAATCTTATTTCC
70043386 TTAGCATAGT
Statistics
Matches: 211, Mismatches: 35, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
92 70 0.33
93 3 0.01
94 4 0.02
95 4 0.02
96 85 0.40
97 45 0.21
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (96 bp):
GAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCC
TGGCGTTGAGTAGATTAAAGCTGAAGGCAGC
Found at i:70043452 original size:74 final size:73
Alignment explanation
Indices: 70043323--70043459 Score: 211
Period size: 74 Copynumber: 1.9 Consensus size: 73
70043313 TGAAGGTAGC
*
70043323 GAATCTTTTTTCCCTGGCATTGAAGTGGAAAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTT
1 GAATCTTATTTCCCTGGCATTGAAGTGGAAAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTT
70043388 AGCATAGT
66 AGCATAGT
* * * **
70043396 GAATCTTATTTCCCTGGCGTTGCAGTGGGATAGATTAAAGCTGAAGGCAGTGAATCTTATTTCC
1 GAATCTTATTTCCCTGGCATTGAAGT-GGAAAGATTAAAGCTGAAGGCAGCAAATCTTATTTCC
70043460 CTGGCGTTGC
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
73 23 0.40
74 34 0.60
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (73 bp):
GAATCTTATTTCCCTGGCATTGAAGTGGAAAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCTT
AGCATAGT
Found at i:70043469 original size:51 final size:51
Alignment explanation
Indices: 70043396--70043817 Score: 368
Period size: 51 Copynumber: 8.7 Consensus size: 51
70043386 TTAGCATAGT
* * * *
70043396 GAATCTTATTTCCCTGGCGTTGCAGTGGGATAGATTAAAGCTGAAGGCAGT
1 GAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
*
70043447 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
1 GAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* *
70043498 GAATCTTTTTTTTCCTTGGCGTTGCAGT-----AGATTAAAGCTAAAGGCAGC
1 GAATC--TTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * *
70043546 AAATCTTTTTTCCCTGGCGTTGTAGTAGAACAGATTAAAGCTGAAGGCAGC
1 GAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * * *
70043597 GAATC-TTTTTCTCTTGGCATTGTAGTGG---A-A-T--A---GAAGGCAGA
1 GAATCTTTTTTC-CCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * * *
70043638 GAAT-TTTTTTCCCCGGCGTTGTAGTGGAACAAATTAAAGCTGAAGGCAAC
1 GAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
* * * *
70043688 AAATC-TTTTTCCCTAGCGCTGCAGT-----AGATTAAAGCTGAAGGTAGC
1 GAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
** * * * ** * *
70043733 GAAAATTATTTCCCTGGTGTTACAAAGGAACAGATTAAAGCTGAAGGTAGA
1 GAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
*
70043784 GAATCTTTTTTCCCTGGAGTTGCAGTGGAACAGA
1 GAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGA
70043818 AGGCCACAAA
Statistics
Matches: 299, Mismatches: 46, Indels: 52
0.75 0.12 0.13
Matches are distributed among these distances:
40 13 0.04
41 18 0.06
43 1 0.00
44 2 0.01
45 20 0.07
46 33 0.11
47 2 0.01
48 24 0.08
50 32 0.11
51 135 0.45
53 19 0.06
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC
Found at i:70043580 original size:99 final size:98
Alignment explanation
Indices: 70043426--70043809 Score: 371
Period size: 99 Copynumber: 4.0 Consensus size: 98
70043416 TGCAGTGGGA
** *
70043426 TAGATTAAAGCTGAAGGCAGTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGA
1 TAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGAACAGATTAAAGCTGA
70043491 AGGCAGCGAATCTTTTTTTTCCTTGGCGTTGCAG
66 AGGCAGCGAATC-TTTTTTTCCTTGGCGTTGCAG
* * *
70043525 TAGATTAAAGCTAAAGGCAGCAAATCTTTTTTCCCTGGCGTTGTAGTAGAACAGATTAAAGCTGA
1 TAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGAACAGATTAAAGCTGA
* * *
70043590 AGGCAGCGAATCTTTTTCT-CTTGGCATTGTAG
66 AGGCAGCGAATCTTTTTTTCCTTGGCGTTGCAG
* * * * * * *
70043622 TGGA--ATA---GAAGGCAG-AGAAT-TTTTTTCCCCGGCGTTGTAGTGGAACAAATTAAAGCTG
1 TAGATTAAAGCTGAAGGCAGCA-AATCTTATTTCCCTGGCGTTGCAGTAGAACAGATTAAAGCTG
* * * * *
70043680 AAGGCAACAAATC--TTTTTCCCTAGCGCTGCAG
65 AAGGCAGCGAATCTTTTTTTCCTTGGCGTTGCAG
* * * * *
70043712 TAGATTAAAGCTGAAGGTAGCGAAA-ATTATTTCCCTGGTGTTACA-AAGGAACAGATTAAAGCT
1 TAGATTAAAGCTGAAGGCAGC-AAATCTTATTTCCCTGGCGTTGCAGTA-GAACAGATTAAAGCT
* * * *
70043775 GAAGGTAGAGAATC-TTTTTTCCCTGGAGTTGCAG
64 GAAGGCAGCGAATCTTTTTTTCCTTGGCGTTGCAG
70043809 T
1 T
70043810 GGAACAGAAG
Statistics
Matches: 232, Mismatches: 41, Indels: 26
0.78 0.14 0.09
Matches are distributed among these distances:
89 4 0.02
90 11 0.05
91 47 0.20
92 12 0.05
95 9 0.04
96 40 0.17
97 32 0.14
98 6 0.03
99 71 0.31
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (98 bp):
TAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGAACAGATTAAAGCTGA
AGGCAGCGAATCTTTTTTTCCTTGGCGTTGCAG
Found at i:70043660 original size:40 final size:41
Alignment explanation
Indices: 70043588--70043666 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
70043578 GATTAAAGCT
* **
70043588 GAAGGCAGCGAATCTTTTTCTCTTGGCATTGTAGTGGAATA
1 GAAGGCAGAGAATCTTTTTCTCCCGGCATTGTAGTGGAATA
* *
70043629 GAAGGCAGAGAATTTTTTTC-CCCGGCGTTGTAGTGGAA
1 GAAGGCAGAGAATCTTTTTCTCCCGGCATTGTAGTGGAA
70043667 CAAATTAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
40 15 0.45
41 18 0.55
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (41 bp):
GAAGGCAGAGAATCTTTTTCTCCCGGCATTGTAGTGGAATA
Found at i:70043790 original size:187 final size:189
Alignment explanation
Indices: 70043438--70043793 Score: 468
Period size: 187 Copynumber: 1.9 Consensus size: 189
70043428 GATTAAAGCT
* * * * *
70043438 GAAGGCAGTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATC
1 GAAGGCAGAGAATCTTATTTCCCCGGCGTTGCAGTGGAACAAATTAAAGCTGAAGGCAACAAATC
* * * * * *
70043503 TTTTTTTTCCTTGGCGTTGCAGTAGATTAAAGCTAAAGGCAGCAAATCTTTTTTCCCTGGCGTTG
66 --TTTTTTCCCTAGCGCTGCAGTAGATTAAAGCTAAAGGCAGCAAATATTATTTCCCTGGCGTTA
* * *
70043568 TAGTAGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTCTCTTGGCATTGTAGTGGAATA
129 CAGAAGAACAGATTAAAGCTGAAGGCAGAGAATCTTTTTCTCTTGGCATTGTAGTGGAATA
* *
70043629 GAAGGCAGAGAAT-TTTTTTCCCCGGCGTTGTAGTGGAACAAATTAAAGCTGAAGGCAACAAATC
1 GAAGGCAGAGAATCTTATTTCCCCGGCGTTGCAGTGGAACAAATTAAAGCTGAAGGCAACAAATC
* * *
70043693 -TTTTTCCCTAGCGCTGCAGTAGATTAAAGCTGAAGGTAGCGAAA-ATTATTTCCCTGGTGTTAC
66 TTTTTTCCCTAGCGCTGCAGTAGATTAAAGCTAAAGGCAGC-AAATATTATTTCCCTGGCGTTAC
*
70043756 A-AAGGAACAGATTAAAGCTGAAGGTAGAGAATCTTTTT
130 AGAA-GAACAGATTAAAGCTGAAGGCAGAGAATCTTTTT
70043794 TCCCTGGAGT
Statistics
Matches: 143, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
186 1 0.01
187 82 0.57
188 3 0.02
190 45 0.31
191 12 0.08
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (189 bp):
GAAGGCAGAGAATCTTATTTCCCCGGCGTTGCAGTGGAACAAATTAAAGCTGAAGGCAACAAATC
TTTTTTCCCTAGCGCTGCAGTAGATTAAAGCTAAAGGCAGCAAATATTATTTCCCTGGCGTTACA
GAAGAACAGATTAAAGCTGAAGGCAGAGAATCTTTTTCTCTTGGCATTGTAGTGGAATA
Found at i:70044065 original size:142 final size:142
Alignment explanation
Indices: 70043828--70044166 Score: 462
Period size: 142 Copynumber: 2.4 Consensus size: 142
70043818 AGGCCACAAA
* ** * * * *
70043828 CCTTATCTCCTTAAAGTTACAGTGGAGTGGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGC
1 CCTTATCTCCTTAAAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTA-TTCCCTGACGTTAC
*
70043893 AGTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGCAGCAGA
65 AGTGGAACAGATTAAAGCTACAAATTATGGCGGATCCTATCTTCCTAAAGTTGCAGTGCAGCAGA
*
70043958 TTGAAGCCACCAG
130 TCGAAGCCACCAG
* * * * *
70043971 CCTTATCTTCTTAAAGTTGCAGCGGAGCAGAGTGAAGATAACAAATCTTATTCCCTGACGTTACA
1 CCTTATCTCCTTAAAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTATTCCCTGACGTTACA
* * * * *
70044036 GTGTAACAGATTAAAGCTACAAGTTATGGCGGATCCTATCTTCCTGAAGTTGTAGTGGAGCAGAT
66 GTGGAACAGATTAAAGCTACAAATTATGGCGGATCCTATCTTCCTAAAGTTGCAGTGCAGCAGAT
*
70044101 CGAAGCCACTAG
131 CGAAGCCACCAG
* **
70044113 CCTTATCTCCCTGGAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTATTCC
1 CCTTATCTCCTTAAAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTATTCC
70044167 TTTGAAGATG
Statistics
Matches: 169, Mismatches: 27, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
142 128 0.76
143 41 0.24
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (142 bp):
CCTTATCTCCTTAAAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTATTCCCTGACGTTACA
GTGGAACAGATTAAAGCTACAAATTATGGCGGATCCTATCTTCCTAAAGTTGCAGTGCAGCAGAT
CGAAGCCACCAG
Found at i:70044374 original size:20 final size:20
Alignment explanation
Indices: 70044345--70044384 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
70044335 CCAATTCAAC
*
70044345 AAATACAAATAAAATAAAAG
1 AAATAAAAATAAAATAAAAG
*
70044365 AAATAAAAATAAATTAAAAG
1 AAATAAAAATAAAATAAAAG
70044385 TCCAAGAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAATAAAAG
Found at i:70045756 original size:26 final size:27
Alignment explanation
Indices: 70045727--70045788 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
70045717 TTTTATATGA
70045727 TTATTTTAA-CTTGCTTTGTAAATTA-T
1 TTATTTTAAGCTT-CTTTGTAAATTATT
* * *
70045753 TTATGTTAAGGTTCTTTGTATATTATT
1 TTATTTTAAGCTTCTTTGTAAATTATT
70045780 TTATTTTAA
1 TTATTTTAA
70045789 ATTATTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.60
Consensus pattern (27 bp):
TTATTTTAAGCTTCTTTGTAAATTATT
Found at i:70045809 original size:16 final size:15
Alignment explanation
Indices: 70045774--70045813 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
70045764 TTCTTTGTAT
70045774 ATTATTTTATTTTAA
1 ATTATTTTATTTTAA
70045789 ATTATTTTATATATT-A
1 ATTATTTTAT-T-TTAA
70045805 ATTATTTTA
1 ATTATTTTA
70045814 AAATTATCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.43
16 11 0.48
17 2 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTATTTTATTTTAA
Found at i:70045826 original size:27 final size:27
Alignment explanation
Indices: 70045771--70045831 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
70045761 AGGTTCTTTG
* **
70045771 TATATTATTTTATTTTAAATTATTTTA
1 TATATTATATTATTTTAAATTATCCTA
70045798 TATATTA-ATTATTTTAAAATTATCCTA
1 TATATTATATTATTTT-AAATTATCCTA
70045825 TACTATT
1 TA-TATT
70045832 TGCTTTGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 7 0.24
27 18 0.62
28 4 0.14
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (27 bp):
TATATTATATTATTTTAAATTATCCTA
Found at i:70046326 original size:18 final size:17
Alignment explanation
Indices: 70046299--70046343 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
70046289 GATTATTGCT
* *
70046299 CTTATGTGTATTGTATTG
1 CTTATTTGTATT-TATTA
70046317 CTTATTTGTATTTATTA
1 CTTATTTGTATTTATTA
*
70046334 ATTATTTGTA
1 CTTATTTGTA
70046344 GTTCATTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.22, C:0.04, G:0.13, T:0.60
Consensus pattern (17 bp):
CTTATTTGTATTTATTA
Found at i:70051057 original size:2 final size:2
Alignment explanation
Indices: 70051050--70051079 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
70051040 NNNNNNNNNG
70051050 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
70051080 AGAACAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:70052400 original size:20 final size:21
Alignment explanation
Indices: 70052372--70052411 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
70052362 TTGCTAAACA
*
70052372 TCTATTAACAA-ACTAACTAT
1 TCTAATAACAAGACTAACTAT
70052392 TCTAATAACAAGACTAACTA
1 TCTAATAACAAGACTAACTA
70052412 CCCAACTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (21 bp):
TCTAATAACAAGACTAACTAT
Found at i:70053931 original size:13 final size:13
Alignment explanation
Indices: 70053913--70053937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70053903 CATTATTTAC
70053913 ATTTTGGCTTTTG
1 ATTTTGGCTTTTG
70053926 ATTTTGGCTTTT
1 ATTTTGGCTTTT
70053938 TTCATAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.20, T:0.64
Consensus pattern (13 bp):
ATTTTGGCTTTTG
Found at i:70054262 original size:17 final size:18
Alignment explanation
Indices: 70054230--70054263 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
70054220 AAAAGTTGTG
*
70054230 ATAATTACACATTTAAAA
1 ATAATTACAAATTTAAAA
70054248 ATAATTA-AAATTTAAA
1 ATAATTACAAATTTAAA
70054264 CTAAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (18 bp):
ATAATTACAAATTTAAAA
Found at i:70054670 original size:20 final size:20
Alignment explanation
Indices: 70054641--70054678 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70054631 CCAATTCAAC
*
70054641 AAATACAAATAAAATAAAAG
1 AAATAAAAATAAAATAAAAG
*
70054661 AAATAAAAATAAATTAAA
1 AAATAAAAATAAAATAAA
70054679 GGTCCATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (20 bp):
AAATAAAAATAAAATAAAAG
Found at i:70074282 original size:31 final size:32
Alignment explanation
Indices: 70074246--70074310 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
70074236 CTTAGATAAT
70074246 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
70074277 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
70074309 TT
1 TT
70074311 GNNNNNNNNN
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:70076224 original size:22 final size:21
Alignment explanation
Indices: 70076199--70076239 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
70076189 TGTATGGTAT
* *
70076199 GATTTGGTTTTGGTATTATATA
1 GATTCGGTTATGGT-TTATATA
70076221 GATTCGGTTATGGTTTATA
1 GATTCGGTTATGGTTTATA
70076240 AGTATAGAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.22, C:0.02, G:0.24, T:0.51
Consensus pattern (21 bp):
GATTCGGTTATGGTTTATATA
Done.