Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 30 of 210
Found at i:10688043 original size:62 final size:62
Alignment explanation
Indices: 10687946--10688071 Score: 198
Period size: 62 Copynumber: 2.0 Consensus size: 62
10687936 TCTATTATGT
* * * * *
10687946 TCTAACAATATACATAGGGGTTTGGATATATTTGAAAAATTATTAATAAATCATCGATAAAA
1 TCTAACAATACACACAAGGGTTTGGATATATTTGAAAAATCATTAATAAATCATCAATAAAA
*
10688008 TCTAACAATACACACAAGGGTTTGGATATATTTGAAAAATCCTTAATAAATCATCAATAAAA
1 TCTAACAATACACACAAGGGTTTGGATATATTTGAAAAATCATTAATAAATCATCAATAAAA
10688070 TC
1 TC
10688072 CTACATGGCC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (62 bp):
TCTAACAATACACACAAGGGTTTGGATATATTTGAAAAATCATTAATAAATCATCAATAAAA
Found at i:10701174 original size:22 final size:21
Alignment explanation
Indices: 10701125--10701181 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
10701115 AAACTAATCC
10701125 TCTCTCAAATTTCCTCTCAATT
1 TCTCTCAAA-TTCCTCTCAATT
10701147 TGCTCTCAAATTCCT-TCCAAATT
1 T-CTCTCAAATTCCTCT-C-AATT
*
10701170 TCTCTGAAATTC
1 TCTCTCAAATTC
10701182 ATACTTAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 1 0.03
22 17 0.55
23 13 0.42
ACGTcount: A:0.25, C:0.30, G:0.04, T:0.42
Consensus pattern (21 bp):
TCTCTCAAATTCCTCTCAATT
Found at i:10702153 original size:7 final size:7
Alignment explanation
Indices: 10702141--10702165 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10702131 AGTTGATTGA
10702141 TATTTAG
1 TATTTAG
10702148 TATTTAG
1 TATTTAG
10702155 TATTTAG
1 TATTTAG
10702162 TATT
1 TATT
10702166 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:10702842 original size:18 final size:18
Alignment explanation
Indices: 10702815--10702854 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
10702805 CAGGTGTGTT
* *
10702815 TCCTATCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
10702833 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
10702851 TCCT
1 TCCT
10702855 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.05, T:0.47
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:10703420 original size:22 final size:22
Alignment explanation
Indices: 10703395--10703964 Score: 656
Period size: 22 Copynumber: 26.2 Consensus size: 22
10703385 TTTAATTGTC
10703395 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
10703417 AAACCCTAACCCTAACCCTTAACTTAA
1 AAACCCT-A----AACCCTTAACTTAA
*
10703444 AAACCCT-AACCTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
10703465 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
10703487 AAACCCT-AACCCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
10703508 AAACCCTAAACCCTTAAGTTAA
1 AAACCCTAAACCCTTAACTTAA
* *
10703530 AAACCATGAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* *
10703552 AAACCCT-AACCTTTGACTGT-A
1 AAACCCTAAACCCTTAACT-TAA
10703573 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* *
10703595 AAACCATAAACTCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
10703617 AAACCCTAAACCCTT-ACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
10703638 AAATCCT-AACCCTTGACTTTA
1 AAACCCTAAACCCTTAACTTAA
10703659 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* *
10703681 AAACACT-AACCTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* *
10703702 AAACCCT-AACTCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
10703723 AAACCCTAAACCTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
10703745 AAACCTTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
10703767 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
10703788 AAACTCCT-AACCCTTAACTTTA
1 AAAC-CCTAAACCCTTAACTTAA
*
10703810 AAACCCTAAA-CCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
10703831 AAACACTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
10703853 AAACCCT-AACCCTTAACTT-A
1 AAACCCTAAACCCTTAACTTAA
10703873 AAACCCTTAAA-CCTTAAACCCTT--
1 AAACCC-TAAACCCTT-AA--CTTAA
*
10703896 AAACCTTAAACCCTTAACTTTAA
1 AAACCCTAAACCCTTAAC-TTAA
* *
10703919 AACCCCT-AACACTTAACTTTAA
1 AAACCCTAAACCCTTAAC-TTAA
* *
10703941 AACCCCT-AACCCTT-ACTTTA
1 AAACCCTAAACCCTTAACTTAA
10703961 AAAC
1 AAAC
10703965 NNNNNNNNNN
Statistics
Matches: 478, Mismatches: 45, Indels: 52
0.83 0.08 0.09
Matches are distributed among these distances:
20 21 0.04
21 180 0.38
22 238 0.50
23 15 0.03
24 3 0.01
27 21 0.04
ACGTcount: A:0.42, C:0.30, G:0.01, T:0.26
Consensus pattern (22 bp):
AAACCCTAAACCCTTAACTTAA
Found at i:10703422 original size:15 final size:15
Alignment explanation
Indices: 10703402--10703450 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
10703392 GTCAAACCCT
10703402 AAACCCTTAACTTAA
1 AAACCCTTAACTTAA
*
10703417 AAACCC-TAACCCT--
1 AAACCCTTAA-CTTAA
10703430 -AACCCTTAACTTAA
1 AAACCCTTAACTTAA
10703444 AAACCCT
1 AAACCCT
10703451 AACCTTTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 10
0.69 0.05 0.26
Matches are distributed among these distances:
12 7 0.26
13 3 0.11
14 3 0.11
15 14 0.52
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (15 bp):
AAACCCTTAACTTAA
Found at i:10703487 original size:43 final size:44
Alignment explanation
Indices: 10703395--10703964 Score: 656
Period size: 43 Copynumber: 13.1 Consensus size: 44
10703385 TTTAATTGTC
10703395 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCT-A----AACCCTTAACTTAA
*
10703444 AAACCCT-AACCTTTAACTTAAAAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* *
10703487 AAACCCT-AACCCTTAACTTTAAAACCCTAAACCCTTAAGTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * * *
10703530 AAACCATGAACCCTTAACTTAAAAACCCT-AACCTTTGACTGT-A
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACT-TAA
* *
10703573 AAACCCTAAACCCTTAACTTAAAAACCATAAACTCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * *
10703617 AAACCCTAAACCCTT-ACTTAAAAATCCT-AACCCTTGACTTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* *
10703659 AAACCCTAAACCCTTAACTTAAAAACACT-AACCTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * *
10703702 AAACCCT-AACTCTTAACTTTAAAACCCTAAACCTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
*
10703745 AAACCTTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* *
10703788 AAACTCCT-AACCCTTAACTTTAAAACCCTAAA-CCTTAACTTTA
1 AAAC-CCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
*
10703831 AAACACTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-A
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
*
10703873 AAACCCTTAAA-CCTTAAACCCTT--AAACCTTAAACCCTTAACTTTAA
1 AAACCC-TAAACCCTT-AA--CTTAAAAACCCTAAACCCTTAAC-TTAA
* * * *
10703919 AACCCCT-AACACTTAACTTTAAAACCCCT-AACCCTT-ACTTTA
1 AAACCCTAAACCCTTAAC-TTAAAAACCCTAAACCCTTAACTTAA
10703961 AAAC
1 AAAC
10703965 NNNNNNNNNN
Statistics
Matches: 454, Mismatches: 45, Indels: 51
0.83 0.08 0.09
Matches are distributed among these distances:
42 65 0.14
43 252 0.56
44 89 0.20
45 14 0.03
46 6 0.01
47 1 0.00
48 20 0.04
49 7 0.02
ACGTcount: A:0.42, C:0.30, G:0.01, T:0.26
Consensus pattern (44 bp):
AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
Found at i:10703893 original size:15 final size:15
Alignment explanation
Indices: 10703860--10703912 Score: 83
Period size: 15 Copynumber: 3.6 Consensus size: 15
10703850 TAAAAACCCT
10703860 AACCCTT-AA-CTTAA
1 AACCCTTAAACCTT-A
10703874 AACCCTTAAACCTTA
1 AACCCTTAAACCTTA
10703889 AACCCTTAAACCTTA
1 AACCCTTAAACCTTA
10703904 AACCCTTAA
1 AACCCTTAA
10703913 CTTTAAAACC
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
14 7 0.19
15 27 0.73
16 3 0.08
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
AACCCTTAAACCTTA
Found at i:10703895 original size:8 final size:8
Alignment explanation
Indices: 10703873--10703912 Score: 66
Period size: 8 Copynumber: 5.2 Consensus size: 8
10703863 CCTTAACTTA
10703873 AAACCCTT
1 AAACCCTT
10703881 AAA-CCTT
1 AAACCCTT
10703888 AAACCCTT
1 AAACCCTT
10703896 AAA-CCTT
1 AAACCCTT
10703903 AAACCCTT
1 AAACCCTT
10703911 AA
1 AA
10703913 CTTTAAAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 14 0.47
8 16 0.53
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.25
Consensus pattern (8 bp):
AAACCCTT
Found at i:10703921 original size:15 final size:14
Alignment explanation
Indices: 10703860--10703934 Score: 80
Period size: 15 Copynumber: 5.1 Consensus size: 14
10703850 TAAAAACCCT
10703860 AACCCTTAA-CTTAA
1 AACCCTTAACCTT-A
10703874 AACCCTTAAACCTTA
1 AACCCTT-AACCTTA
10703889 AACCCTTAAACCTTA
1 AACCCTT-AACCTTA
*
10703904 AACCCTTAACTTTAA
1 AACCCTTAACCTT-A
*
10703919 AACCCCTAACACTTA
1 AACCCTTAAC-CTTA
10703934 A
1 A
10703935 CTTTAAAACC
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
14 12 0.22
15 37 0.69
16 5 0.09
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.27
Consensus pattern (14 bp):
AACCCTTAACCTTA
Found at i:10707614 original size:126 final size:127
Alignment explanation
Indices: 10707385--10707955 Score: 859
Period size: 127 Copynumber: 4.5 Consensus size: 127
10707375 CCCAAACATG
* *
10707385 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
10707450 TAGAAGCGTTTTTTTAAACCATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
66 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * * *
10707511 CTATTGTAGTAAAAGCTCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGT
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
10707576 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
66 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * *
10707638 CTACTATAGCAAAAGCGCGTCCACGAGGGTGCGATTTCACAGATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
10707703 TTGAAGCGTTTTTTTAAACTATTTACTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
66 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
*
10707765 CTACTGTAGCAAAAGCGCGTCCACGA-GGCGCGATTTCACAATTTCTTCTCATAA-AGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTG
* * * *
10707828 CTTGAAGC-ATTTTTTATACTATTAGCTCAAAAACGTCAACTCGAAATTATTT-TTCCAGGAC
65 CTTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * * * * *
10707889 CTACTATAGCAAAAGCGCGTACACGTGGGCGCGACTTT-AGAAATCCTTCTGATAA-AGCATCCT
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGA-TTTCACAAATTCTTCTCA-AATAGCATCCT
10707952 GCTT
64 GCTT
10707956 TAATTTTATC
Statistics
Matches: 409, Mismatches: 32, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
124 32 0.08
125 71 0.17
126 151 0.37
127 155 0.38
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (127 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
Found at i:10711963 original size:19 final size:18
Alignment explanation
Indices: 10711919--10711967 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
10711909 CCTTAAATTG
*
10711919 ATATAATAAATTAGTATA
1 ATATAATATATTAGTATA
* *
10711937 TTACTAATATATTATTAATA
1 ATA-TAATATATTAGT-ATA
10711957 ATATAATATAT
1 ATATAATATAT
10711968 AACTATTACT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 2 0.08
19 18 0.72
20 5 0.20
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATATAATATATTAGTATA
Found at i:10711996 original size:30 final size:28
Alignment explanation
Indices: 10711954--10712026 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 28
10711944 TATATTATTA
10711954 ATAATATAATATATAACTATTACTAAAAAT
1 ATAA-ATAATATATAACTATTA-TAAAAAT
* *
10711984 ATAAATACATATATAACTATTATTATAAT
1 ATAAATA-ATATATAACTATTATAAAAAT
*
10712013 ATAAATTATA-ATAA
1 ATAAATAATATATAA
10712027 AATATATGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 4 0.10
28 3 0.08
29 14 0.36
30 18 0.46
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (28 bp):
ATAAATAATATATAACTATTATAAAAAT
Found at i:10714546 original size:21 final size:21
Alignment explanation
Indices: 10714522--10714637 Score: 82
Period size: 21 Copynumber: 5.6 Consensus size: 21
10714512 GGAATAAATG
*
10714522 GGTAAATAAAAATAATAATAA
1 GGTAAATAATAATAATAATAA
**
10714543 GGTATGTAATAATAATAAATACA
1 GGTAAATAATAATAAT-AATA-A
*
10714566 -AT-AATAATAATAATAATAA
1 GGTAAATAATAATAATAATAA
*
10714585 TG-ATAATAATAATAATAATAA
1 GGTA-AATAATAATAATAATAA
*
10714606 --T-AATAATAATAAACTAATTA
1 GGTAAATAATAAT-AA-TAATAA
*
10714626 GCTAAATAATAA
1 GGTAAATAATAA
10714638 AAGTGCTAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
18 9 0.12
19 3 0.04
20 9 0.12
21 40 0.53
22 6 0.08
23 9 0.12
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (21 bp):
GGTAAATAATAATAATAATAA
Found at i:10714636 original size:3 final size:3
Alignment explanation
Indices: 10714526--10714617 Score: 105
Period size: 3 Copynumber: 29.7 Consensus size: 3
10714516 TAAATGGGTA
* * *
10714526 AAT AAA AAT AAT AAT AAGGT ATGT AAT AAT AAT AA- ATAC AAT AAT AAT
1 AAT AAT AAT AAT AAT AA--T A-AT AAT AAT AAT AAT A-AT AAT AAT AAT
*
10714574 AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10714618 ACTAATTAGC
Statistics
Matches: 77, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
2 1 0.01
3 71 0.92
4 3 0.04
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:10720194 original size:25 final size:26
Alignment explanation
Indices: 10720137--10720197 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
10720127 AAACGAAACC
** *
10720137 AAGCCTTTGTGGTGAATTCTCTAGTG
1 AAGCCTTTGTAATGAATGCTCTAGTG
10720163 AAGCCTTTGTAATGAATGCTCT-GTG
1 AAGCCTTTGTAATGAATGCTCTAGTG
10720188 AAGCCTTTGT
1 AAGCCTTTGT
10720198 GGTGAACTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 13 0.41
26 19 0.59
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (26 bp):
AAGCCTTTGTAATGAATGCTCTAGTG
Found at i:10720203 original size:25 final size:24
Alignment explanation
Indices: 10720137--10720224 Score: 104
Period size: 25 Copynumber: 3.5 Consensus size: 24
10720127 AAACGAAACC
10720137 AAGCCTTTGTGGTGAATTCTCTAGTG
1 AAGCCTTTGTGGTGAA-TCTCT-GTG
**
10720163 AAGCCTTTGTAATGAATGCTCTGTG
1 AAGCCTTTGTGGTGAAT-CTCTGTG
*
10720188 AAGCCTTTGTGGTGAACTCTCTGTA
1 AAGCCTTTGTGGTGAA-TCTCTGTG
*
10720213 AAGACTTTGTGG
1 AAGCCTTTGTGG
10720225 CAAATTCTCT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
25 35 0.65
26 19 0.35
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (24 bp):
AAGCCTTTGTGGTGAATCTCTGTG
Found at i:10720233 original size:25 final size:25
Alignment explanation
Indices: 10720181--10720250 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
10720171 GTAATGAATG
* * **
10720181 CTCTGTGAAGCCTTTGTGGTGAACT
1 CTCTGTAAAGACTTTGTGGCAAACT
*
10720206 CTCTGTAAAGACTTTGTGGCAAATT
1 CTCTGTAAAGACTTTGTGGCAAACT
*
10720231 CTCTGAAAAGACTTTCGTGG
1 CTCTGTAAAGACTTT-GTGG
10720251 TGTATTATTC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
25 34 0.89
26 4 0.11
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (25 bp):
CTCTGTAAAGACTTTGTGGCAAACT
Found at i:10720969 original size:21 final size:21
Alignment explanation
Indices: 10720934--10720979 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
10720924 AAACATGTTT
* *
10720934 GTGTGGCTTCCCCACATGCCC
1 GTGTGGCTACCCCACAGGCCC
* *
10720955 GTGTGGCTACTCCACAGGCTC
1 GTGTGGCTACCCCACAGGCCC
10720976 GTGT
1 GTGT
10720980 TGCCAGACCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.11, C:0.35, G:0.28, T:0.26
Consensus pattern (21 bp):
GTGTGGCTACCCCACAGGCCC
Found at i:10722936 original size:19 final size:19
Alignment explanation
Indices: 10722912--10722948 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10722902 GCTAGTTAAT
*
10722912 TATTTATATATATTTTCAC
1 TATTTATATATATGTTCAC
*
10722931 TATTTATTTATATGTTCA
1 TATTTATATATATGTTCA
10722949 TTGAAAGCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (19 bp):
TATTTATATATATGTTCAC
Found at i:10727285 original size:11 final size:11
Alignment explanation
Indices: 10727252--10727290 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
10727242 CTTTTTAGAT
10727252 AATTAT-AAAA
1 AATTATAAAAA
10727262 AATATATAGAAAA
1 AAT-TATA-AAAA
10727275 AATTATAAAAA
1 AATTATAAAAA
10727286 AATTA
1 AATTA
10727291 GTAATTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 3 0.12
11 12 0.46
12 4 0.15
13 7 0.27
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
AATTATAAAAA
Found at i:10728270 original size:27 final size:26
Alignment explanation
Indices: 10728230--10728291 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
10728220 ATTGTAAATT
*
10728230 AATTATAATTAT-A-ATTATTT-TTA
1 AATTATAATTATCATAATATTTATTA
*
10728253 AATATGTAATTATCATAATATTTATTA
1 AAT-TATAATTATCATAATATTTATTA
10728280 AATTATAATTAT
1 AATTATAATTAT
10728292 TTTTAAATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 3 0.09
24 8 0.25
25 1 0.03
26 14 0.44
27 6 0.19
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (26 bp):
AATTATAATTATCATAATATTTATTA
Found at i:10728297 original size:17 final size:19
Alignment explanation
Indices: 10728267--10728307 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
10728257 TGTAATTATC
10728267 ATAA-TATTTATTAAAT-T
1 ATAATTATTTATTAAATGT
10728284 ATAATTATTT-TTAAATGT
1 ATAATTATTTATTAAATGT
10728302 ATAATT
1 ATAATT
10728308 GTTGTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
ATAATTATTTATTAAATGT
Found at i:10728320 original size:44 final size:45
Alignment explanation
Indices: 10728215--10728322 Score: 130
Period size: 44 Copynumber: 2.4 Consensus size: 45
10728205 TTTTTTAAAT
* * *
10728215 TAATAATTGT-AAATTAATTATAATTATAATTATTTTTAAATATG
1 TAATTATTGTAAAATTTATTATAATTATAATTATTTTTAAATATA
** * *
10728259 TAATTATCATAATATTTATTA-AATTATAATTATTTTTAAATGTA
1 TAATTATTGTAAAATTTATTATAATTATAATTATTTTTAAATATA
*
10728303 TAATTGTTGTAAAATTTATT
1 TAATTATTGTAAAATTTATT
10728323 TTATGTCAGT
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 44 0.85
45 8 0.15
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.52
Consensus pattern (45 bp):
TAATTATTGTAAAATTTATTATAATTATAATTATTTTTAAATATA
Found at i:10731135 original size:54 final size:54
Alignment explanation
Indices: 10731047--10731154 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
10731037 ACAATCTTAG
* * * * * *
10731047 TGAGTTATATGGTTTGGATACACGACTGTATGACTCCAGCTTATATGGCTTCAA
1 TGAGTTACACGGTTTAGATACACGACTATATGACTCCACCTTACATGGCTTCAA
*
10731101 TGAGTTACACGGTTTAGATACACGACTATGTGACTCCACCTTACATGGCTTCAA
1 TGAGTTACACGGTTTAGATACACGACTATATGACTCCACCTTACATGGCTTCAA
10731155 ATTTTCACAC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (54 bp):
TGAGTTACACGGTTTAGATACACGACTATATGACTCCACCTTACATGGCTTCAA
Found at i:10732534 original size:27 final size:27
Alignment explanation
Indices: 10732480--10732534 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
10732470 TGCTTATTTT
* *
10732480 ACTAAAATTAAACATAAACTAATAAAA
1 ACTAAAAATAAACATAAAATAATAAAA
*
10732507 ACTAAAAATAAA-ATAAAATCATATAAA
1 ACTAAAAATAAACATAAAATAATA-AAA
10732534 A
1 A
10732535 TGGCTAGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (27 bp):
ACTAAAAATAAACATAAAATAATAAAA
Found at i:10733501 original size:5 final size:5
Alignment explanation
Indices: 10733474--10733545 Score: 89
Period size: 5 Copynumber: 15.2 Consensus size: 5
10733464 TTTTTATGTT
*
10733474 TTATA -TATA TTAT- TT-TA TTATA TAATA -TATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
* *
10733520 TTATA TTATA TTGTT TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA T
10733546 AAATTAAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
3 1 0.02
4 11 0.19
5 45 0.79
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:10747589 original size:21 final size:21
Alignment explanation
Indices: 10747545--10747591 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
10747535 GGCAACCCTC
**
10747545 CTTTAACTTAACCTGAGTGCT
1 CTTTAACTTAACCCAAGTGCT
10747566 CTTTAACTTAACCCAAGT-CTT
1 CTTTAACTTAACCCAAGTGC-T
10747587 CTTTA
1 CTTTA
10747592 GAATTGGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (21 bp):
CTTTAACTTAACCCAAGTGCT
Found at i:10752775 original size:16 final size:16
Alignment explanation
Indices: 10752741--10752774 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
10752731 TTAATGTTTA
10752741 TTCTTTTCTCTCCTTT
1 TTCTTTTCTCTCCTTT
*
10752757 TTCTTCTTCTTTCCTTT
1 TTCTT-TTCTCTCCTTT
10752774 T
1 T
10752775 CAATCTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
TTCTTTTCTCTCCTTT
Found at i:10758233 original size:51 final size:52
Alignment explanation
Indices: 10758177--10758288 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 52
10758167 AAATTTATCC
*
10758177 TTATTAAATAAAAGA-TAAATTAATATATTT-TAACA-TTTTCAATCATTTTTA
1 TTATTAAA-AAAAGATTAAATTAA-ATATTTATAACATTTTTCAATAATTTTTA
* * *
10758228 TTATTAAAAAAATATTTGAATTAAATATTTAATAATATTTTTCAATAATTTTTA
1 TTATTAAAAAAAGA-TTAAATTAAATATTT-ATAACATTTTTCAATAATTTTTA
10758282 TTATTAA
1 TTATTAA
10758289 CAACACGTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
50 5 0.10
51 14 0.27
52 7 0.13
53 4 0.08
54 22 0.42
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (52 bp):
TTATTAAAAAAAGATTAAATTAAATATTTATAACATTTTTCAATAATTTTTA
Found at i:10765938 original size:714 final size:712
Alignment explanation
Indices: 10764569--10765976 Score: 1998
Period size: 714 Copynumber: 2.0 Consensus size: 712
10764559 TATAATTATA
*
10764569 TGAGCGCATGGATAACGAAGTATGTTAAACGTCCCACAATCGCAAGTCCTATTTCTCAAGTGTAC
1 TGAGCGCATGGATAACGAAGTATGTTAAACGTCCCACAATCGCAAATCCTATTTCTCAAGTGTAC
* * *
10764634 ACAATATTTCCCCCGGTAATACCTTGGTTCAGTCTGTCGAACTCCGTCATACGAAACCATAAATT
66 ACAATATTCCCCCCGGTAATACCTTGGTTCAGTCTGTCAAACTCCGTCACACGAAACCATAAATT
* * * * * * * * * *
10764699 GTCGCGATTATGACATATTGTGTGTATAGTGTTGGCTCGCGCCTTCGTCTTGTTAATTTCTTACA
131 ATCGCGATCATAACATACTGTGTGCATAGTGTTGGCCCACACCTTCGCCTTGTTAATTTCATACA
* * * * *
10764764 ATACCTTCTAGCAGCATATATGGCTCCCTACATTTTGCCTTTATAACTCGCTGCTCACTTTAGAA
196 ATACCTTCGAGCACCATACATGGCTCCCTACATTTGGCCTTTATAACTCACTGCTCACTTTAGAA
* * *
10764829 ATAGTGTCACCAAATGAAAATATGTCTCTCGCACAACCGAGGTCATCTACAAATGACGTATTTTT
261 ATAGTGTCACCAAACGAAAATATGTCTCTCGCACAACCGAGGTCATCAACAAATGACGCATTTTT
* * * *
10764894 TTAGAATAAAATTTATGCATTCAGCTAGGTTTGAGGTCATATGACCATATCGTAGGCCGTCATCG
326 TTAGAACAAAATTTATGCATTCAGCCAGGTTTAAGGTCATATGACCATATCGTAGGCCCTCATCG
*
10764959 TATGCTTGTGTCCACTGATCGAAAGGTATGTTAAAGAGGTAGTCTGCACCTTGATCGTTAACTGA
391 TATGCTTGTGTCCACTGATCGAAAGGTATGTTAAAGAGGTAGTCTGCACCTTAATCGTTAACTGA
* * ** * *
10765024 TCACAAAATTGCCAACATCTTATGAAAATGGTCCTTATTAATCTCGTACCTTGTCAACATAAGTT
456 CCACAAAATCGCCAACATCTTATGAAAACAGTCATTATTAATCTCGTACCCTGTCAACATAAGTT
* * *
10765089 GATAGCGAAAATTACATACCACTCTTTCATTCAAAATAAATTGAATATTACAAACGAAATTATAT
521 GATAGCGAAAATTACATACCACTCTTCCATTCAAAATAAATTAAATATTACAAACAAAATTATAT
* * * ***
10765154 TAAAATAGATTAAATACCCATATTGGTCATTTGCTGTCAATCAGTGGTAGATTGATATTGCCCAT
586 TAAAAGAGATTAAATACCCATATTAGTCACTTGCTGTCAATCAGTGGTAGACCAATATTGCCCAT
*
10765219 AGTAGTTGGACGCAACGTGCCTTAAACAATACCGATGGTGTGTGTGATCTTATAGGCTTCTC
651 AGTAGTTAGACGCAACGTGCCTTAAACAATACCGATGGTGTGTGTGATCTTATAGGCTTCTC
* *
10765281 TGAGCGCATGGATAACGAAGTGTGTTAAACGTCCCACAATTGCAAATCCTATTTCTCAAGTGTAC
1 TGAGCGCATGGATAACGAAGTATGTTAAACGTCCCACAATCGCAAATCCTATTTCTCAAGTGTAC
* * *
10765346 ACGATATTCCCCCCGGTAATACCTTGGTTCGGTCTGTCAAACTCCGTCACACGAAACCATAAGTT
66 ACAATATTCCCCCCGGTAATACCTTGGTTCAGTCTGTCAAACTCCGTCACACGAAACCATAAATT
* * *
10765411 ATTGCGATCATAACATACTGTGTGCATGGTGTTGGCCCACACCTTCGCCTTGTTAATTTCATGCA
131 ATCGCGATCATAACATACTGTGTGCATAGTGTTGGCCCACACCTTCGCCTTGTTAATTTCATACA
* *
10765476 ATACCTTCCGA-CACCATACATGGCCTCCCTGCATTTGGCCTTTATAACTCACTGCTCGCTTT-G
196 ATACCTT-CGAGCACCATACATGG-CTCCCTACATTTGGCCTTTATAACTCACTGCTCACTTTAG
* * * * *
10765539 AAAATAGTGTCGCCAAACGAAAATATGTCTCTCGCACAACTGAGGTTATCAATAAATGACGCGTT
259 -AAATAGTGTCACCAAACGAAAATATGTCTCTCGCACAACCGAGGTCATCAACAAATGACGCATT
* * *
10765604 TCTTTTATAACAGAATTTATTCATTCAGCCAGGTTTAAGGTCATATGACCATATCGTAGGCCACT
323 T-TTTTAGAACAAAATTTATGCATTCAGCCAGGTTTAAGGTCATATGACCATATCGTAGGCC-CT
* * * * *
10765669 -GTTGTATGCTTGTGTCCACTGATCGAAAGGTATGTTAGAGAGGTAGTTTGCGCCTTAATCGTTA
386 CATCGTATGCTTGTGTCCACTGATCGAAAGGTATGTTAAAGAGGTAGTCTGCACCTTAATCGTTA
** * * *
10765733 ACTGACCGGAAAATCGCCAACAT-TTCATGAAAACAGTCATTATTGATCTTGTACCCTGTCAATA
451 ACTGACCACAAAATCGCCAACATCTT-ATGAAAACAGTCATTATTAATCTCGTACCCTGTCAACA
*
10765797 TAAGTTGATAGCGAAAATTACATACCACTCTTCCATTCAGAATAAATTAAATATTACAAACAAAA
515 TAAGTTGATAGCGAAAATTACATACCACTCTTCCATTCAAAATAAATTAAATATTACAAACAAAA
* ** * * *
10765862 TTATATTAATAGAGATTAAATGTCCTTGTTAGTCACTTG-TCGTCATTCAGTGGTAGACCAATAT
580 TTATATTAAAAGAGATTAAATACCCATATTAGTCACTTGCT-GTCAATCAGTGGTAGACCAATAT
* *
10765926 TGCCCGTAGTAGTTAGACGCAACGTGCCTTAGACAATACCGATGGTGTGTG
644 TGCCCATAGTAGTTAGACGCAACGTGCCTTAAACAATACCGATGGTGTGTG
10765977 CAATTTCATA
Statistics
Matches: 609, Mismatches: 80, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
712 191 0.31
713 96 0.16
714 321 0.53
715 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (712 bp):
TGAGCGCATGGATAACGAAGTATGTTAAACGTCCCACAATCGCAAATCCTATTTCTCAAGTGTAC
ACAATATTCCCCCCGGTAATACCTTGGTTCAGTCTGTCAAACTCCGTCACACGAAACCATAAATT
ATCGCGATCATAACATACTGTGTGCATAGTGTTGGCCCACACCTTCGCCTTGTTAATTTCATACA
ATACCTTCGAGCACCATACATGGCTCCCTACATTTGGCCTTTATAACTCACTGCTCACTTTAGAA
ATAGTGTCACCAAACGAAAATATGTCTCTCGCACAACCGAGGTCATCAACAAATGACGCATTTTT
TTAGAACAAAATTTATGCATTCAGCCAGGTTTAAGGTCATATGACCATATCGTAGGCCCTCATCG
TATGCTTGTGTCCACTGATCGAAAGGTATGTTAAAGAGGTAGTCTGCACCTTAATCGTTAACTGA
CCACAAAATCGCCAACATCTTATGAAAACAGTCATTATTAATCTCGTACCCTGTCAACATAAGTT
GATAGCGAAAATTACATACCACTCTTCCATTCAAAATAAATTAAATATTACAAACAAAATTATAT
TAAAAGAGATTAAATACCCATATTAGTCACTTGCTGTCAATCAGTGGTAGACCAATATTGCCCAT
AGTAGTTAGACGCAACGTGCCTTAAACAATACCGATGGTGTGTGTGATCTTATAGGCTTCTC
Found at i:10768178 original size:124 final size:125
Alignment explanation
Indices: 10767958--10768346 Score: 554
Period size: 124 Copynumber: 3.1 Consensus size: 125
10767948 AAGGCCAAGC
** * * * *
10767958 AGGAACTACTGTAGAAAAA-ATTGTCCACGTGGGAGCTTTTTTCAGTAATTTTGTTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCTATGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * *
10768022 TCCTGCTTAAAGCATTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
66 TCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
10768082 AGGAACTACTGTAGAAAAAGAGCGTCTATGTAGGAG-TTTTTTCAGTAATTTTGCTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCTATGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* *
10768146 TCCTGATTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTT
66 TCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
*
10768206 CAGGAACTACTGTAGAAAAGGAGCGTCCATATG-A-GAGCTTTTTTCAGTAATTTTGCTGACAGT
1 -AGGAACTACTGTAGAAAAAGAGCGT-C-TATGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGT
* * *
10768269 ACATCCTGCTTGAAGCGTTTTTGACATTATTTTTTCAGAAACGTCTTCTCAAAATTAATTTTTCT
63 GCATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT-ATTTTT-T
*
10768334 -GAAACTACTGTAG
1 AGGAACTACTGTAG
10768347 CAAATAAAAC
Statistics
Matches: 240, Mismatches: 18, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
124 101 0.42
125 38 0.16
126 90 0.38
127 10 0.04
128 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.38
Consensus pattern (125 bp):
AGGAACTACTGTAGAAAAAGAGCGTCTATGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
TCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:10768530 original size:34 final size:34
Alignment explanation
Indices: 10768452--10768534 Score: 96
Period size: 34 Copynumber: 2.4 Consensus size: 34
10768442 TTAAAAAAAA
* *
10768452 CTAAACCCTAATTTAATTAATTTTCTTAAAAACT
1 CTAAAACCTAATTTAATTAATTTTCTTAAAAACC
* * * *
10768486 TTAAATCCTAATTTAATTAATTTAT-TTTAAACCC
1 CTAAAACCTAATTTAATTAATTT-TCTTAAAAACC
10768520 CTAAAACCTAATTTA
1 CTAAAACCTAATTTA
10768535 TTTTTTTTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 40 0.98
35 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.42
Consensus pattern (34 bp):
CTAAAACCTAATTTAATTAATTTTCTTAAAAACC
Found at i:10768537 original size:29 final size:29
Alignment explanation
Indices: 10768499--10768573 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
10768489 AATCCTAATT
* *
10768499 TAATTAATTTATTTTAAACCCCTAAAACC
1 TAATTTATTTATTTTAAAACCCTAAAACC
* * *
10768528 TAATTTATTTTTTTTAAAACTCTAAACCC
1 TAATTTATTTATTTTAAAACCCTAAAACC
*
10768557 TGATTTA-TT-TTTTAAAA
1 TAATTTATTTATTTTAAAA
10768574 TTTTTAAACC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
27 8 0.20
28 2 0.05
29 30 0.75
ACGTcount: A:0.37, C:0.15, G:0.01, T:0.47
Consensus pattern (29 bp):
TAATTTATTTATTTTAAAACCCTAAAACC
Found at i:10775243 original size:18 final size:18
Alignment explanation
Indices: 10775200--10775243 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
10775190 ACTCAATCCA
* *
10775200 AACCCAAGTATCCAACCC
1 AACCCAATTACCCAACCC
10775218 AACCCAATTACCCAACCC
1 AACCCAATTACCCAACCC
10775236 AACCCAAT
1 AACCCAAT
10775244 CATAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.41, C:0.45, G:0.02, T:0.11
Consensus pattern (18 bp):
AACCCAATTACCCAACCC
Found at i:10775402 original size:9 final size:9
Alignment explanation
Indices: 10775388--10775472 Score: 107
Period size: 9 Copynumber: 9.4 Consensus size: 9
10775378 GTAGTGATTC
10775388 AATTCGGTT
1 AATTCGGTT
*
10775397 AATTCGGGT
1 AATTCGGTT
* *
10775406 AATTTGGGT
1 AATTCGGTT
*
10775415 AATTTGGTT
1 AATTCGGTT
10775424 AATTCGGTT
1 AATTCGGTT
*
10775433 AATTCGGGT
1 AATTCGGTT
10775442 AATTCGGTT
1 AATTCGGTT
*
10775451 AATTCGATT
1 AATTCGGTT
*
10775460 AATTCAGTT
1 AATTCGGTT
10775469 AATT
1 AATT
10775473 TTTAACCAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 67 1.00
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (9 bp):
AATTCGGTT
Found at i:10775472 original size:27 final size:27
Alignment explanation
Indices: 10775388--10775464 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
10775378 GTAGTGATTC
* *
10775388 AATTCGGTTAATTCGGGTAATTTGGGT
1 AATTCGGTTAATTCGGTTAATTCGGGT
*
10775415 AATTTGGTTAATTCGGTTAATTCGGGT
1 AATTCGGTTAATTCGGTTAATTCGGGT
*
10775442 AATTCGGTTAATTCGATTAATTC
1 AATTCGGTTAATTCGGTTAATTC
10775465 AGTTAATTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.25, C:0.09, G:0.23, T:0.43
Consensus pattern (27 bp):
AATTCGGTTAATTCGGTTAATTCGGGT
Found at i:10789226 original size:25 final size:25
Alignment explanation
Indices: 10789193--10789240 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
10789183 GCTATAAACA
10789193 GTAAACTCCTCCAAGCTGAATAAAG
1 GTAAACTCCTCCAAGCTGAATAAAG
* *
10789218 GTAAGCTCCTCCGAGCTGAATAA
1 GTAAACTCCTCCAAGCTGAATAA
10789241 CGACAATCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (25 bp):
GTAAACTCCTCCAAGCTGAATAAAG
Found at i:10792629 original size:85 final size:86
Alignment explanation
Indices: 10792504--10792674 Score: 317
Period size: 85 Copynumber: 2.0 Consensus size: 86
10792494 ATGGATTTAT
* *
10792504 CGCTTGAACCTAATTATTCGTTCCAATAACATAAATTATCAAATCGAAATTTATAATAATATTAT
1 CGCTTGAACCTAATTATTCGTTCAAATAACATAAATTATCAAATCGAAATTTAAAATAATATTAT
10792569 ATTTGACT-GTAAATATTAAA
66 ATTTGACTCGTAAATATTAAA
10792589 CGCTTGAACCTAATTATTCGTTCAAATAACATAAATTATCAAATCGAAATTTAAAATAATATTAT
1 CGCTTGAACCTAATTATTCGTTCAAATAACATAAATTATCAAATCGAAATTTAAAATAATATTAT
10792654 ATTTGACTCGTAAATATTAAA
66 ATTTGACTCGTAAATATTAAA
10792675 TAATAATATT
Statistics
Matches: 83, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
85 71 0.86
86 12 0.14
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (86 bp):
CGCTTGAACCTAATTATTCGTTCAAATAACATAAATTATCAAATCGAAATTTAAAATAATATTAT
ATTTGACTCGTAAATATTAAA
Found at i:10795083 original size:20 final size:20
Alignment explanation
Indices: 10795038--10795083 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
10795028 ATCATGGTCT
10795038 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTCTTTACTTAC
*
10795057 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTCTTTACTTAC
10795077 TTGCTTA
1 TTGCTTA
10795084 TTTAAATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.13, C:0.24, G:0.07, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTCTTTACTTAC
Found at i:10795406 original size:50 final size:50
Alignment explanation
Indices: 10795289--10795530 Score: 209
Period size: 50 Copynumber: 4.7 Consensus size: 50
10795279 GATAATAACA
* * * ** * * *
10795289 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAT-CGG
* * **
10795338 TGCCAATGCCATATCCCAGATATGGTCTTACGTGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
* * * *
10795388 TGCCCATGCCATGTCCCAGACATAGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
** * **
10795438 TGCCAACCCCATGTCCAAGACATGGTCTTACGTGGGACCTCTCATAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCAT-A--TC---GG
*
10795494 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGA
10795531 TCTCATCCCC
Statistics
Matches: 154, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.24
50 81 0.53
53 2 0.01
56 33 0.21
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
Found at i:10795681 original size:22 final size:21
Alignment explanation
Indices: 10795637--10795681 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
10795627 TCAACATTAA
* **
10795637 ATAATTTCATAAAATAAGTAC
1 ATAATTTCAGAAAATAACAAC
10795658 ATAATTTCTAGAAAATAACAAC
1 ATAATTTC-AGAAAATAACAAC
10795680 AT
1 AT
10795682 TAATAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.31
Consensus pattern (21 bp):
ATAATTTCAGAAAATAACAAC
Found at i:10799417 original size:13 final size:13
Alignment explanation
Indices: 10799401--10799436 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
10799391 AAGTTCATAT
10799401 TGAAATTTTGTTA
1 TGAAATTTTGTTA
10799414 TGAAATTTTGTTA
1 TGAAATTTTGTTA
*
10799427 AGAAATTTTG
1 TGAAATTTTG
10799437 ATGTTTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (13 bp):
TGAAATTTTGTTA
Found at i:10799660 original size:32 final size:32
Alignment explanation
Indices: 10799597--10799664 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 32
10799587 TGGATAGGTT
10799597 TTAATGTAATTATGATAATTTTTAAAGGTTAA
1 TTAATGTAATTATGATAATTTTTAAAGGTTAA
*
10799629 TTAA-GTAATT-TGATAATTATGTTAAATGTTAA
1 TTAATGTAATTATGATAATT-T-TTAAAGGTTAA
10799661 TTAA
1 TTAA
10799665 ACAAAAGATG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
30 8 0.24
31 7 0.21
32 18 0.55
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (32 bp):
TTAATGTAATTATGATAATTTTTAAAGGTTAA
Found at i:10811073 original size:24 final size:24
Alignment explanation
Indices: 10811046--10811092 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
10811036 AGAAATATGA
10811046 ATGGTAATAAGATAATAAACTAAT
1 ATGGTAATAAGATAATAAACTAAT
10811070 ATGGTAATAAGATAATAAACTAA
1 ATGGTAATAAGATAATAAACTAA
10811093 GTGTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.55, C:0.04, G:0.13, T:0.28
Consensus pattern (24 bp):
ATGGTAATAAGATAATAAACTAAT
Found at i:10814621 original size:72 final size:72
Alignment explanation
Indices: 10814512--10814651 Score: 280
Period size: 72 Copynumber: 1.9 Consensus size: 72
10814502 CATTGATAAA
10814512 ATTAAAATATGAATGTGATTCATACAAAAAAATTAATTATACATATTTTACCGAAATTATTAATA
1 ATTAAAATATGAATGTGATTCATACAAAAAAATTAATTATACATATTTTACCGAAATTATTAATA
10814577 TAAAATT
66 TAAAATT
10814584 ATTAAAATATGAATGTGATTCATACAAAAAAATTAATTATACATATTTTACCGAAATTATTAATA
1 ATTAAAATATGAATGTGATTCATACAAAAAAATTAATTATACATATTTTACCGAAATTATTAATA
10814649 TAA
66 TAA
10814652 CCAGTTATAA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.50, C:0.07, G:0.06, T:0.37
Consensus pattern (72 bp):
ATTAAAATATGAATGTGATTCATACAAAAAAATTAATTATACATATTTTACCGAAATTATTAATA
TAAAATT
Found at i:10816320 original size:503 final size:503
Alignment explanation
Indices: 10815321--10816329 Score: 1653
Period size: 503 Copynumber: 2.0 Consensus size: 503
10815311 CATCCATTAC
* *
10815321 CTAACCAAGTCATTTTTCAAAATGCCAACCATTCTCATAATCTTATAATGCATGAAATGTAACAC
1 CTAACCAAGTCATGTTTCAAAATGCCAACCATTCCCATAATCTTATAATGCATGAAATGTAACAC
* ** * *
10815386 CTTATACCCCGCACGGTCGTTGAGCCCCAGTAACATGACTCTACACCACCGTCACAACATCACAC
66 CTTATACCCAGCACGGTCACTGAGCCCAAGTAACATGACGCTACACCACCGTCACAACATCACAC
* *
10815451 ATCACATAAAGTCTCATTAGAATGTAAACGTCACCAAATTTGAACCAATCATAGAGATTCCAAGC
131 ATCACATAAAGTCTCACTAGAATGCAAACGTCACCAAATTTGAACCAATCATAGAGATTCCAAGC
10815516 CAAGAATACCCTAGGCGACATTAAGTTATGCCAAACATACATAAAAATGAGCCCATAACAAATTA
196 CAAGAATACCCTAGGCGACATTAAGTTATGCCAAACATACATAAAAATGAGCCCATAACAAATTA
** *
10815581 AAAGCATGCTTTAATTCCACTTAACAAAAATTATCAAAAATCACATAGGTACTGATACTAATTCA
261 AAAGCATGCTTTAAGACCACTTAACAAAAATTATCAAAAATCACATAGGTACCGATACTAATTCA
* *
10815646 ATGGTATCGATATTTCTCATATATGGTATCGATACCGATAAAAAAAATCAGTACCAAATTAGTAT
326 ATGATATCGATATTTCTCATATATGGTATCGATACCGATAAAAAAAATCAGTACCAAATCAGTAT
* *
10815711 TCAATTTTTCTGCAAAAGTTAAAACCCATCAATTATAGATAGAAATAAAAAATGTATCGGTATTT
391 TCAATTTTTCTGCAAAAGCTAAAACCCATCAATTATAGATAGAAATAAAAAACGTATCGGTATTT
* *
10815776 CTACCTCGAGTATCGATACTCAAGAAATGGTATCGATACCAAAATGAA
456 CTACCCCGAGTATAGATACTCAAGAAATGGTATCGATACCAAAATGAA
**
10815824 CTAACCAAGTCATGTTTCAAAATGCTGACCATTCCCATAATCTTATAATGCATGAAATGTAACAC
1 CTAACCAAGTCATGTTTCAAAATGCCAACCATTCCCATAATCTTATAATGCATGAAATGTAACAC
** *
10815889 CTTATACTTAGCCCGGTCACTGAGCCCAAGTAACATGACGCTACACCACCGTCACAACATCACAC
66 CTTATACCCAGCACGGTCACTGAGCCCAAGTAACATGACGCTACACCACCGTCACAACATCACAC
*
10815954 ATCACATAAAGTCTCACTAGAATGCAAACGTCACCAAATTTGAACCAATTATAGAGATAT-CAAG
131 ATCACATAAAGTCTCACTAGAATGCAAACGTCACCAAATTTGAACCAATCATAGAGAT-TCCAAG
** * *
10816018 CCAAGAATACCCTAGGTTACATTAAGTTATGCCAAACATACATAAAAATGAGTCTATAACAAATT
195 CCAAGAATACCCTAGGCGACATTAAGTTATGCCAAACATACATAAAAATGAGCCCATAACAAATT
* *
10816083 TAAAGCATGCTTTAAGACCACTTAACAAAAATTATCAAAAATCACGTAGGTACCGATACTAATTC
260 AAAAGCATGCTTTAAGACCACTTAACAAAAATTATCAAAAATCACATAGGTACCGATACTAATTC
* *
10816148 AATGATATCGATATTTCTCATATATGGTATCGATACCGAT-CAAAAAATCAGTATCAAATCAGTA
325 AATGATATCGATATTTCTCATATATGGTATCGATACCGATAAAAAAAATCAGTACCAAATCAGTA
**
10816212 TTCAATTTTTCTGCAAAAGCTAAAACCCATCAATTATAGATAGAAATCCAAAACGTATCGGTATT
390 TTCAATTTTTCTGCAAAAGCTAAAACCCATCAATTATAGATAGAAATAAAAAACGTATCGGTATT
* **
10816277 TTTACCCCGAGTATAGATACTTGAGAAATGGTATCGAATACCAAAATGAA
455 TCTACCCCGAGTATAGATACTCAAGAAATGGTATCG-ATACCAAAATGAA
10816327 CTA
1 CTA
10816330 CTATTTTCCT
Statistics
Matches: 467, Mismatches: 37, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
502 113 0.24
503 353 0.76
504 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (503 bp):
CTAACCAAGTCATGTTTCAAAATGCCAACCATTCCCATAATCTTATAATGCATGAAATGTAACAC
CTTATACCCAGCACGGTCACTGAGCCCAAGTAACATGACGCTACACCACCGTCACAACATCACAC
ATCACATAAAGTCTCACTAGAATGCAAACGTCACCAAATTTGAACCAATCATAGAGATTCCAAGC
CAAGAATACCCTAGGCGACATTAAGTTATGCCAAACATACATAAAAATGAGCCCATAACAAATTA
AAAGCATGCTTTAAGACCACTTAACAAAAATTATCAAAAATCACATAGGTACCGATACTAATTCA
ATGATATCGATATTTCTCATATATGGTATCGATACCGATAAAAAAAATCAGTACCAAATCAGTAT
TCAATTTTTCTGCAAAAGCTAAAACCCATCAATTATAGATAGAAATAAAAAACGTATCGGTATTT
CTACCCCGAGTATAGATACTCAAGAAATGGTATCGATACCAAAATGAA
Found at i:10819757 original size:2 final size:2
Alignment explanation
Indices: 10819750--10819776 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10819740 TTCTCACTTT
10819750 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
10819777 TTTAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:10829525 original size:55 final size:55
Alignment explanation
Indices: 10829451--10829557 Score: 169
Period size: 55 Copynumber: 1.9 Consensus size: 55
10829441 AAAGAATAAA
* *
10829451 CTTAGGCTTGAAAAACCTAGGAAGTTATTAAGGTGGGAATTAAACCAAAATTAAC
1 CTTAGGCTTGAAAAACCTAGGAAGTTATCAAGGTGGGAATTAAACAAAAATTAAC
** *
10829506 CTTAGGCTTGACGACCCTAGGAAGTTATCAAGGTGGGAATTAAACAAAAATT
1 CTTAGGCTTGAAAAACCTAGGAAGTTATCAAGGTGGGAATTAAACAAAAATT
10829558 GGTATGGTCT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.25
Consensus pattern (55 bp):
CTTAGGCTTGAAAAACCTAGGAAGTTATCAAGGTGGGAATTAAACAAAAATTAAC
Found at i:10832875 original size:38 final size:37
Alignment explanation
Indices: 10832805--10832877 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
10832795 CTTTCATAAT
*
10832805 TTCACTTTTTCACTTTCAATCACAATTCAATTCAAAA
1 TTCACTTTTCCACTTTCAATCACAATTCAATTCAAAA
10832842 TTCACTTTTCCA-TTTCTAAGTCA-ATATTCAATTCAA
1 TTCACTTTTCCACTTTC-AA-TCACA-ATTCAATTCAA
10832878 TTCCACACCT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 14 0.44
38 14 0.44
ACGTcount: A:0.33, C:0.23, G:0.01, T:0.42
Consensus pattern (37 bp):
TTCACTTTTCCACTTTCAATCACAATTCAATTCAAAA
Found at i:10832908 original size:23 final size:22
Alignment explanation
Indices: 10832865--10832908 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
10832855 TTCTAAGTCA
10832865 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
10832888 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
10832909 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:10833063 original size:51 final size:51
Alignment explanation
Indices: 10833003--10833143 Score: 176
Period size: 51 Copynumber: 2.8 Consensus size: 51
10832993 ATGTTTGGTT
* * * *
10833003 CACACAGTAGCCTGCACATAGTACCACACATGTGACCATTACCATCCCATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATAACCATCCCATA
* ** * *
10833054 CACGTAGTAGCCTGCACATAGTACTACACACGTGATTGA-AACTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATAACCATCCCATA
*
10833105 CGCATAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAT
10833144 CACTTTCACT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
50 1 0.01
51 73 0.97
52 1 0.01
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATAACCATCCCATA
Found at i:10839885 original size:20 final size:21
Alignment explanation
Indices: 10839862--10839929 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 21
10839852 TTGCACATCT
*
10839862 GTGCCCCTAATTACACATTC-
1 GTGCCCCTATTTACACATTCG
* *
10839882 GTGCCCCTGTTTACACA-TCT
1 GTGCCCCTATTTACACATTCG
* *
10839902 ATGCCCCTATTTGCAC-TTCG
1 GTGCCCCTATTTACACATTCG
10839922 GTGCCCCT
1 GTGCCCCT
10839930 GACGTCACAT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 2 0.05
20 37 0.95
ACGTcount: A:0.16, C:0.37, G:0.15, T:0.32
Consensus pattern (21 bp):
GTGCCCCTATTTACACATTCG
Found at i:10839907 original size:40 final size:40
Alignment explanation
Indices: 10839848--10839930 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
10839838 TTTGGTATCA
* *
10839848 CTGTTTGCACATCTGTGCCCCTAATTACACATTC-GTGCCC
1 CTGTTTACACATCTATGCCCCTAATTACAC-TTCGGTGCCC
* *
10839888 CTGTTTACACATCTATGCCCCTATTTGCACTTCGGTGCCC
1 CTGTTTACACATCTATGCCCCTAATTACACTTCGGTGCCC
10839928 CTG
1 CTG
10839931 ACGTCACATC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.08
40 35 0.92
ACGTcount: A:0.16, C:0.35, G:0.16, T:0.34
Consensus pattern (40 bp):
CTGTTTACACATCTATGCCCCTAATTACACTTCGGTGCCC
Found at i:10839939 original size:40 final size:40
Alignment explanation
Indices: 10839855--10839953 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
10839845 TCACTGTTTG
* * **
10839855 CACATCTGTGCCCCTAATTACACATTCGTGCCCCTGTTTA
1 CACATCTATGCCCCTATTTACACATTCGTGCCCCTGCGTA
*
10839895 CACATCTATGCCCCTATTTGCAC-TTCGGTGCCCCTGACGT-
1 CACATCTATGCCCCTATTTACACATTC-GTGCCCCTG-CGTA
*
10839935 CACATCTATGTCCCTATTT
1 CACATCTATGCCCCTATTT
10839954 TGCATCTATG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
39 3 0.06
40 47 0.92
41 1 0.02
ACGTcount: A:0.18, C:0.35, G:0.13, T:0.33
Consensus pattern (40 bp):
CACATCTATGCCCCTATTTACACATTCGTGCCCCTGCGTA
Found at i:10846256 original size:27 final size:26
Alignment explanation
Indices: 10846226--10846421 Score: 187
Period size: 27 Copynumber: 7.3 Consensus size: 26
10846216 GGTATAAAAT
*
10846226 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCT-TGGGGGTATTTCGG
*
10846253 TCATTTTACCCTTCGGGGGTATTTCAG
1 TCATTTTACCCTT-GGGGGTATTTCGG
* * * *
10846280 TTA-TTTACCCTTCGAGGGTGTTCCGG
1 TCATTTTACCCTT-GGGGGTATTTCGG
* *
10846306 TCATTTTACCCTTTAGGGGTATTTTGG
1 TCATTTTACCC-TTGGGGGTATTTCGG
*
10846333 TCATTTTACCCTTCGGGGTATTTCGG
1 TCATTTTACCCTTGGGGGTATTTCGG
* * *
10846359 TCATTTTACCCTTCGAGAGTATTTTGG
1 TCATTTTACCCTT-GGGGGTATTTCGG
* * *
10846386 TTATATTACCCTTCGGGGGTATATCGG
1 TCATTTTACCCTT-GGGGGTATTTCGG
*
10846413 TTATTTTAC
1 TCATTTTAC
10846422 ACATGTCTCT
Statistics
Matches: 139, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 48 0.35
27 89 0.64
28 2 0.01
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.43
Consensus pattern (26 bp):
TCATTTTACCCTTGGGGGTATTTCGG
Found at i:10846310 original size:53 final size:52
Alignment explanation
Indices: 10846230--10846421 Score: 206
Period size: 53 Copynumber: 3.6 Consensus size: 52
10846220 TAAAATTCAT
* * * **
10846230 TTTACCCTATGGGGGTATTTCGATCATTTTACCCTTCGGGGGTATTTCAGTTA
1 TTTACCCT-TCGGGGTATTCCGGTCATTTTACCCTTCGGGGGTATTTTGGTTA
* ** *
10846283 TTTACCCTTCGAGGGTGTTCCGGTCATTTTACCCTTTAGGGGTATTTTGGTCA
1 TTTACCCTTCG-GGGTATTCCGGTCATTTTACCCTTCGGGGGTATTTTGGTTA
* * *
10846336 TTTTACCCTTCGGGGTATTTCGGTCATTTTACCCTTCGAGAGTATTTTGGTTA
1 -TTTACCCTTCGGGGTATTCCGGTCATTTTACCCTTCGGGGGTATTTTGGTTA
*
10846389 TATTACCCTTCGGGGGTATAT-CGGTTATTTTAC
1 T-TTACCCTTC-GGGGTAT-TCCGGTCATTTTAC
10846422 ACATGTCTCT
Statistics
Matches: 117, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 3 0.03
53 84 0.72
54 29 0.25
55 1 0.01
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.43
Consensus pattern (52 bp):
TTTACCCTTCGGGGTATTCCGGTCATTTTACCCTTCGGGGGTATTTTGGTTA
Found at i:10846395 original size:80 final size:80
Alignment explanation
Indices: 10846226--10846421 Score: 232
Period size: 80 Copynumber: 2.5 Consensus size: 80
10846216 GGTATAAAAT
* * * *
10846226 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTTCGGGGGTATTTCAGTTATTTACCCT
1 TCATATTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCAGTCATTTACCCT
* *
10846291 TCGAGGGTGTTCCGG
66 TCGAGAGTATTCCGG
* * * *
10846306 TCATTTTACCCTTTAGGGGTATTTTGGTCATTTTACCCTTC-GGGGTATTTCGGTCATTTTACCC
1 TCATATTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCAGTCA-TTTACCC
**
10846370 TTCGAGAGTATTTTGG
65 TTCGAGAGTATTCCGG
* * * *
10846386 TTATATTACCCTTCGGGGGTATATCGGTTATTTTAC
1 TCATATTACCCTTTGGGGGTATTTCGGTCATTTTAC
10846422 ACATGTCTCT
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
79 13 0.13
80 85 0.87
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.43
Consensus pattern (80 bp):
TCATATTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCAGTCATTTACCCT
TCGAGAGTATTCCGG
Found at i:10855117 original size:18 final size:18
Alignment explanation
Indices: 10855084--10855118 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10855074 ACGATGTGCC
*
10855084 AAACTATTTTCGTGCTTG
1 AAACTATTTTCATGCTTG
*
10855102 AAACTATTTTTATGCTT
1 AAACTATTTTCATGCTT
10855119 CTTATTCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.49
Consensus pattern (18 bp):
AAACTATTTTCATGCTTG
Found at i:10857425 original size:22 final size:23
Alignment explanation
Indices: 10857396--10857457 Score: 70
Period size: 26 Copynumber: 2.5 Consensus size: 23
10857386 GATAAAAGGA
10857396 TGAAATGAGAGATGAGAGATGCT
1 TGAAATGAGAGATGAGAGATGCT
* *
10857419 TGAATGATTGAGGGATGAGGGATGCT
1 TGAA--A-TGAGAGATGAGAGATGCT
10857445 TGAAATGGAGAGA
1 TGAAAT-GAGAGA
10857458 AAAGGCCTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
23 5 0.16
24 6 0.19
25 1 0.03
26 20 0.62
ACGTcount: A:0.35, C:0.03, G:0.39, T:0.23
Consensus pattern (23 bp):
TGAAATGAGAGATGAGAGATGCT
Found at i:10858215 original size:265 final size:257
Alignment explanation
Indices: 10857797--10858267 Score: 717
Period size: 265 Copynumber: 1.8 Consensus size: 257
10857787 TTGATATCGT
** *
10857797 AACATAGGGAGCAAAATAGAAAATTCTGAGGCTGCCTTTAATGTCACGATACAGCCTAATAGTGT
1 AACATAGAAAGCAAAATAGAAAATTCTGAGGCTGCCTTCAATGTCACGATACAGCCTAATAGTGT
*
10857862 CGCAACATACGACATCTTGAAGAAAAGTATACTGACTGCTATGTCATGACACAAGTCTTGATGTT
66 CGCAACATACGACATCTTGAAGAAAAGTATACTGACTGCTATGTCATGACACAAGTCTTGATGTG
* * * *
10857927 TCACGACATCGACTCTAGACCAGAAATAATACGAGTCAGGGGGAGTTTTGGTCCGTACAACCAAA
131 TCACGACATCGACTCTAGACCAGAAATAATACGAGTCAAGAGAAGTTTTGGTCCGCACAACCAAA
10857992 ATTAAAGCTCGTGCTAAAAAGATACTAGCCGTTATGTTACAACATGGAGGGTTTGATGTCAC
196 ATTAAAGCTCGTGCTAAAAAGATACTAGCCGTTATGTTACAACATGGAGGGTTTGATGTCAC
* * *
10858054 AACATAGAAAGCAAAATAGAGGAATTCTGAGGCTTCCTTCAATGTCATGATACAGCCTAATAGTG
1 AACATAGAAAGCAAAATAGA-AAATTCTGAGGCTGCCTTCAATGTCACGATACAGCCTAATAGTG
* *
10858119 TCGCAACATACCCTTGAAGACATCTTGAAGAAAATTATACTGATTGCTATGTCATGACACAAGTC
65 TCGCAACATA--C-----GACATCTTGAAGAAAAGTATACTGACTGCTATGTCATGACACAAGTC
* * *
10858184 TTGATGTGTCACGACATTGACTCTGGACCAGAAATAATATGAGTCAAGAGAAGTTTTGGTCCGCA
123 TTGATGTGTCACGACATCGACTCTAGACCAGAAATAATACGAGTCAAGAGAAGTTTTGGTCCGCA
*
10858249 CAACCAAACTTAAAGCTCG
188 CAACCAAAATTAAAGCTCG
10858268 GGAACATTAG
Statistics
Matches: 189, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
257 18 0.10
258 50 0.26
260 1 0.01
265 120 0.63
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (257 bp):
AACATAGAAAGCAAAATAGAAAATTCTGAGGCTGCCTTCAATGTCACGATACAGCCTAATAGTGT
CGCAACATACGACATCTTGAAGAAAAGTATACTGACTGCTATGTCATGACACAAGTCTTGATGTG
TCACGACATCGACTCTAGACCAGAAATAATACGAGTCAAGAGAAGTTTTGGTCCGCACAACCAAA
ATTAAAGCTCGTGCTAAAAAGATACTAGCCGTTATGTTACAACATGGAGGGTTTGATGTCAC
Found at i:10865235 original size:227 final size:228
Alignment explanation
Indices: 10864833--10865272 Score: 706
Period size: 227 Copynumber: 1.9 Consensus size: 228
10864823 TAGATTATTG
*
10864833 AATGGCGAGTTTCAATGTAAGCACTTCAAGTCCATCAATTGAATTCCAGGAAAATGACAGTGAAA
1 AATGGCAAGTTTCAATGTAAGCACTTCAAGTCCATCAATTGAATTCCAGGAAAATGACAGTGAAA
*
10864898 AATACTTACAACAACTATAGTCGTATACTTTTATCCAAGAGAAAGGATTTGATCCTTTAATGAGG
66 AATACTTACAACAACTATAGCCGTATACTTTTATCCAAGAGAAAGGATTTGATCCTTTAATGAGG
* *
10864963 AATTGTAAAAGAATTTTGGAGAACAAAAATAGAAAGAGAATGGACCAATTTTTTTTTCT-GTCTG
131 AATTGTAAAAGAATTTGGGAGAACAAAAATAGAAAGAGAATGGACCAATTTTTTTTTCTCATCTG
10865027 AAGAGCCTACAACAATTCAATCAATTGAATTCC
196 AAGAGCCTACAACAATTCAATCAATTGAATTCC
* * * *
10865060 AATGGCAAGTTTCAATGTAATCACTTCAAGTCTATCAATTGAATTCCAGGAAAGTGACA-TGGAT
1 AATGGCAAGTTTCAATGTAAGCACTTCAAGTCCATCAATTGAATTCCAGGAAAATGACAGT-GAA
* * * *
10865124 AAATATTTGCCACAACTATAGCCGTATACTTTTATCCAAGAG-TAGGAATTTGATCCTTTAATGA
65 AAATACTTACAACAACTATAGCCGTATACTTTTATCCAAGAGAAAGG-ATTTGATCCTTTAATGA
* *
10865188 GGAATTGTAAAGGAATTTGGGAGAACAAAAATAGAAAGAGAATGGACCAATTTTTTTTTGTCATC
129 GGAATTGTAAAAGAATTTGGGAGAACAAAAATAGAAAGAGAATGGACCAATTTTTTTTTCTCATC
*
10865253 TGAAGAGCCTACAATAATTC
194 TGAAGAGCCTACAACAATTC
10865273 CTATAGTGTG
Statistics
Matches: 195, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
226 4 0.02
227 170 0.87
228 21 0.11
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (228 bp):
AATGGCAAGTTTCAATGTAAGCACTTCAAGTCCATCAATTGAATTCCAGGAAAATGACAGTGAAA
AATACTTACAACAACTATAGCCGTATACTTTTATCCAAGAGAAAGGATTTGATCCTTTAATGAGG
AATTGTAAAAGAATTTGGGAGAACAAAAATAGAAAGAGAATGGACCAATTTTTTTTTCTCATCTG
AAGAGCCTACAACAATTCAATCAATTGAATTCC
Found at i:10866153 original size:18 final size:18
Alignment explanation
Indices: 10866119--10866159 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
10866109 GTAGAAATAA
10866119 ATTTTTAGTTGTTTTTTG
1 ATTTTTAGTTGTTTTTTG
10866137 -TTTTGTAGTT-TTCTTTTG
1 ATTTT-TAGTTGTT-TTTTG
10866155 ATTTT
1 ATTTT
10866160 CTATGTAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
17 6 0.30
18 10 0.50
19 4 0.20
ACGTcount: A:0.10, C:0.02, G:0.15, T:0.73
Consensus pattern (18 bp):
ATTTTTAGTTGTTTTTTG
Found at i:10867016 original size:252 final size:252
Alignment explanation
Indices: 10866571--10867073 Score: 918
Period size: 252 Copynumber: 2.0 Consensus size: 252
10866561 CAATCAACTA
10866571 TACCAAATGATATAGGGAATACAAGAAACAAAGCATGCTAGTATGAATGAAAAATGCTTTAATTT
1 TACCAAATGATATAGGGAATACAAGAAACAAAGCATGCTAGTATGAATGAAAAATGCTTTAATTT
*
10866636 AAGTTTGTTCGGTTGATTAAATTTGTGCATATTGAGATGCTTAAGGGATAACCTAAGGCATTGTT
66 AAGTTTGTTCGGTTGATTAAATTTGTCCATATTGAGATGCTTAAGGGATAACCTAAGGCATTGTT
10866701 TGGAACATATCCATAAACAAAAAGCTTACCTCTACTTATTCACCCATAGTACCTAATTTGAGCTT
131 TGGAACATATCCATAAACAAAAAGCTTACCTCTACTTATTCACCCATAGTACCTAATTTGAGCTT
10866766 GTAAAAACTTCTTGATGTACCATATTACAAAAACCCAAAGCCTAAAATGTTAATTTG
196 GTAAAAACTTCTTGATGTACCATATTACAAAAACCCAAAGCCTAAAATGTTAATTTG
*
10866823 TACCAAATGATATAGGGAATACAAGAAAACAAA-CATGCTAGTATGAATGAAAAATGGTTTAATT
1 TACCAAATGATATAGGGAATACAAG-AAACAAAGCATGCTAGTATGAATGAAAAATGCTTTAATT
* *
10866887 TAAGTTTGTTTGGTTGATTAAATTTGTCCATATTGATATGCTTAAGGGATAACCTAAGGCATTGT
65 TAAGTTTGTTCGGTTGATTAAATTTGTCCATATTGAGATGCTTAAGGGATAACCTAAGGCATTGT
* *
10866952 TTGGAACATATCCATAACCAAAAAGCTTACCTCTAGTTATTCACCCATAGTACCTAATTTGAGCT
130 TTGGAACATATCCATAAACAAAAAGCTTACCTCTACTTATTCACCCATAGTACCTAATTTGAGCT
* *
10867017 TGTAAACACTTCTTGATGTACCATATTACAAAAACCCAAAGCCTGAAATGTTAATTT
195 TGTAAAAACTTCTTGATGTACCATATTACAAAAACCCAAAGCCTAAAATGTTAATTT
10867074 TATTCCCTCT
Statistics
Matches: 242, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
252 235 0.97
253 7 0.03
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (252 bp):
TACCAAATGATATAGGGAATACAAGAAACAAAGCATGCTAGTATGAATGAAAAATGCTTTAATTT
AAGTTTGTTCGGTTGATTAAATTTGTCCATATTGAGATGCTTAAGGGATAACCTAAGGCATTGTT
TGGAACATATCCATAAACAAAAAGCTTACCTCTACTTATTCACCCATAGTACCTAATTTGAGCTT
GTAAAAACTTCTTGATGTACCATATTACAAAAACCCAAAGCCTAAAATGTTAATTTG
Found at i:10870769 original size:9 final size:9
Alignment explanation
Indices: 10870757--10870787 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
10870747 TCGTGATTTA
10870757 CTTTCTTTT
1 CTTTCTTTT
10870766 CTTTTCTTTT
1 C-TTTCTTTT
10870776 CTTTCTTTT
1 CTTTCTTTT
10870785 CTT
1 CTT
10870788 ATTATTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (9 bp):
CTTTCTTTT
Found at i:10870774 original size:14 final size:15
Alignment explanation
Indices: 10870758--10870787 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
10870748 CGTGATTTAC
10870758 TTTCTTTTCTTTTCT
1 TTTCTTTTCTTTTCT
10870773 TTTC-TTTCTTTTCT
1 TTTCTTTTCTTTTCT
10870787 T
1 T
10870788 ATTATTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTCTTTTCTTTTCT
Found at i:10870780 original size:4 final size:5
Alignment explanation
Indices: 10870758--10870787 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
10870748 CGTGATTTAC
10870758 TTTCT TTTCT TTTCT TTTC- TTTCT TTTCT T
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT T
10870788 ATTATTGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTCT
Found at i:10879898 original size:50 final size:50
Alignment explanation
Indices: 10879773--10880008 Score: 192
Period size: 50 Copynumber: 4.6 Consensus size: 50
10879763 TGATAATAAC
* * *
10879773 ATGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGA-TGTTTC-T-T-G
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACT-TCTCATATCG
* * * * * *
10879820 TACCGCCAATGCCATATCCCAGATATGGTCTCACATGGGAGTTCTCATATTG
1 -A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCG
* * * ** * *
10879872 GTGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCG
*
10879922 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATAACCTCAATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCAT-A--TC---G
* *
10879978 ATGTCAATGTCATGTCCCAGACATGGTCTTA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTA
10880009 TGTGGGATCT
Statistics
Matches: 146, Mismatches: 31, Indels: 14
0.76 0.16 0.07
Matches are distributed among these distances:
48 1 0.01
49 34 0.23
50 78 0.53
51 1 0.01
52 1 0.01
53 2 0.01
56 29 0.20
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCG
Found at i:10889913 original size:22 final size:22
Alignment explanation
Indices: 10889888--10889975 Score: 88
Period size: 22 Copynumber: 3.9 Consensus size: 22
10889878 ACTATTAAAT
10889888 AGAGAGCACTAAAGTGCTATAC
1 AGAGAGCACTAAAGTGCTATAC
*
10889910 AGAGAGCAC-AAATGTGCTAAAC
1 AGAGAGCACTAAA-GTGCTATAC
* * *
10889932 GGAGAGCACCAATGTGCTAATAATC
1 AGAGAGCACTAAAGTGCT-AT-A-C
*
10889957 AGAGAGCACTAACGTGCTA
1 AGAGAGCACTAAAGTGCTA
10889976 GTAATCAGAG
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
21 3 0.06
22 30 0.56
23 3 0.06
24 2 0.04
25 16 0.30
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.17
Consensus pattern (22 bp):
AGAGAGCACTAAAGTGCTATAC
Found at i:10889973 original size:25 final size:25
Alignment explanation
Indices: 10889888--10890059 Score: 125
Period size: 25 Copynumber: 7.4 Consensus size: 25
10889878 ACTATTAAAT
*
10889888 AGAGAGCACTAAAGTGCT-AT-A-C
1 AGAGAGCACTAATGTGCTAATAATC
*
10889910 AGAGAGCACAAATGTGCT-A-AA-C
1 AGAGAGCACTAATGTGCTAATAATC
* *
10889932 GGAGAGCACCAATGTGCTAATAATC
1 AGAGAGCACTAATGTGCTAATAATC
* *
10889957 AGAGAGCACTAACGTGCTAGTAATC
1 AGAGAGCACTAATGTGCTAATAATC
*
10889982 AGAGAG------TGTGCTAGTAATC
1 AGAGAGCACTAATGTGCTAATAATC
* * ** *
10890001 AAAGAGCACTGACATGCTAATAACC
1 AGAGAGCACTAATGTGCTAATAATC
* *
10890026 AGAGAGCATTGATGTGCTAATAATC
1 AGAGAGCACTAATGTGCTAATAATC
*
10890051 AAAGAGCAC
1 AGAGAGCAC
10890060 GCTAAACTCC
Statistics
Matches: 119, Mismatches: 21, Indels: 17
0.76 0.13 0.11
Matches are distributed among these distances:
19 17 0.14
22 35 0.29
23 1 0.01
24 2 0.02
25 64 0.54
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.19
Consensus pattern (25 bp):
AGAGAGCACTAATGTGCTAATAATC
Found at i:10889974 original size:47 final size:44
Alignment explanation
Indices: 10889889--10889975 Score: 111
Period size: 47 Copynumber: 1.9 Consensus size: 44
10889879 CTATTAAATA
* *
10889889 GAGAGCACTAAAGTGCTATACAGAGAGCACAAATGTGCTAAACG
1 GAGAGCACCAAAGTGCTATACAGAGAGCACAAACGTGCTAAACG
* *
10889933 GAGAGCACCAATGTGCTAATAATCAGAGAGCACTAACGTGCTA
1 GAGAGCACCAAAGTGCT-AT-A-CAGAGAGCACAAACGTGCTA
10889976 GTAATCAGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
44 15 0.42
45 2 0.06
46 1 0.03
47 18 0.50
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (44 bp):
GAGAGCACCAAAGTGCTATACAGAGAGCACAAACGTGCTAAACG
Found at i:10889993 original size:44 final size:44
Alignment explanation
Indices: 10889944--10890059 Score: 124
Period size: 44 Copynumber: 2.5 Consensus size: 44
10889934 AGAGCACCAA
* * * *
10889944 TGTGCTAATAATCAGAGAGCACTAACGTGCTAGTAATCAGAGAG
1 TGTGCTAATAATCAAAGAGCACTAACATGCTAATAACCAGAGAG
* *
10889988 TGTGCTAGTAATCAAAGAGCACTGACATGCTAATAACCAGAGAGCATTG
1 TGTGCTAATAATCAAAGAGCACTAACATGCTAATAACC--AGAG-A--G
10890037 ATGTGCTAATAATCAAAGAGCAC
1 -TGTGCTAATAATCAAAGAGCAC
10890060 GCTAAACTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 32 0.54
46 4 0.07
47 1 0.02
49 1 0.02
50 21 0.36
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.22
Consensus pattern (44 bp):
TGTGCTAATAATCAAAGAGCACTAACATGCTAATAACCAGAGAG
Found at i:10889994 original size:19 final size:19
Alignment explanation
Indices: 10889970--10890006 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10889960 GAGCACTAAC
*
10889970 GTGCTAGTAATCAGAGAGT
1 GTGCTAGTAATCAAAGAGT
10889989 GTGCTAGTAATCAAAGAG
1 GTGCTAGTAATCAAAGAG
10890007 CACTGACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.11, G:0.30, T:0.24
Consensus pattern (19 bp):
GTGCTAGTAATCAAAGAGT
Found at i:10902593 original size:16 final size:17
Alignment explanation
Indices: 10902561--10902593 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10902551 TAATATAAGA
*
10902561 AATTTGTTTTTATTTTT
1 AATTTGTTTTCATTTTT
10902578 AATTTG-TTTCATTTTT
1 AATTTGTTTTCATTTTT
10902594 TATGCTTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.18, C:0.03, G:0.06, T:0.73
Consensus pattern (17 bp):
AATTTGTTTTCATTTTT
Found at i:10903225 original size:12 final size:13
Alignment explanation
Indices: 10903202--10903230 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
10903192 AAGTGCAGAA
10903202 CAAAACAGAAAAT
1 CAAAACAGAAAAT
10903215 CAAAA-AGAAAAT
1 CAAAACAGAAAAT
10903227 CAAA
1 CAAA
10903231 GCAAGTAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.72, C:0.14, G:0.07, T:0.07
Consensus pattern (13 bp):
CAAAACAGAAAAT
Found at i:10908134 original size:30 final size:30
Alignment explanation
Indices: 10908095--10908153 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
10908085 AAAGGTGGGA
*
10908095 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTT-GGGGAAAAG
*
10908126 TGGG-AGGGAGTAAAAATTTTGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTGGGGAAAA
10908154 TAAAATGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
30 14 0.54
31 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.39, T:0.20
Consensus pattern (30 bp):
TGGGAAGGGAATAAAAATTTTGGGGAAAAG
Found at i:10909804 original size:16 final size:16
Alignment explanation
Indices: 10909791--10909821 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
10909781 AAATTTTTTT
10909791 TTTATTTGATTTTTAG
1 TTTATTTGATTTTTAG
10909807 TTTATTTGATTTTTA
1 TTTATTTGATTTTTA
10909822 CTTAATTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.10, T:0.71
Consensus pattern (16 bp):
TTTATTTGATTTTTAG
Found at i:10916717 original size:21 final size:21
Alignment explanation
Indices: 10916688--10916731 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
10916678 GTGTTTTACT
*
10916688 TTCTGTTTAGCTCTTTCGAGC
1 TTCTATTTAGCTCTTTCGAGC
10916709 TTCTATTTAGCTCTTTCGAGC
1 TTCTATTTAGCTCTTTCGAGC
10916730 TT
1 TT
10916732 TTGGTCAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.11, C:0.23, G:0.16, T:0.50
Consensus pattern (21 bp):
TTCTATTTAGCTCTTTCGAGC
Found at i:10916741 original size:21 final size:21
Alignment explanation
Indices: 10916696--10916754 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
10916686 CTTTCTGTTT
* *
10916696 AGCTCTTTCGAGCTTCTATTT
1 AGCTCTTTCGAGCTTCTAGTC
* *
10916717 AGCTCTTTCGAGCTTTTGGTC
1 AGCTCTTTCGAGCTTCTAGTC
10916738 AGCTCTTAT-GAGCTTCT
1 AGCTCTT-TCGAGCTTCT
10916755 GTTCAACTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 31 0.97
22 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.44
Consensus pattern (21 bp):
AGCTCTTTCGAGCTTCTAGTC
Found at i:10916764 original size:21 final size:21
Alignment explanation
Indices: 10916726--10916802 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
10916716 TAGCTCTTTC
* * *
10916726 GAGCTTTTGGTCAGCTCTTAT
1 GAGCTTCTGTTCAACTCTTAT
10916747 GAGCTTCTGTTCAACTCTTAT
1 GAGCTTCTGTTCAACTCTTAT
*
10916768 GAGTTTCTGTTCAACTCTTAT
1 GAGCTTCTGTTCAACTCTTAT
*
10916789 GAGCTTCTATTCAA
1 GAGCTTCTGTTCAA
10916803 TTTTCGAGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (21 bp):
GAGCTTCTGTTCAACTCTTAT
Found at i:10916765 original size:42 final size:43
Alignment explanation
Indices: 10916686--10916815 Score: 137
Period size: 42 Copynumber: 3.1 Consensus size: 43
10916676 TCGTGTTTTA
* * * *
10916686 CTTTCTGTTTAGCTCTT-TCGAGCTTCTATTTAGCTCTTTCGAG
1 CTTTCTGGTCAGCTCTTAT-GAGCTTCTATTCAACTCTTTCGAG
*
10916729 CTTT-TGGTCAGCTCTTATGAGCTTCTGTTCAACTCTTAT-GAG
1 CTTTCTGGTCAGCTCTTATGAGCTTCTATTCAACTCTT-TCGAG
* *
10916771 -TTTCTGTTCAACTCTTATGAGCTTCTATTCAA-T-TTTCGAG
1 CTTTCTGGTCAGCTCTTATGAGCTTCTATTCAACTCTTTCGAG
10916811 CTTTC
1 CTTTC
10916816 GTTGGCTTAT
Statistics
Matches: 74, Mismatches: 8, Indels: 12
0.79 0.09 0.13
Matches are distributed among these distances:
39 1 0.01
40 5 0.07
41 8 0.11
42 54 0.73
43 6 0.08
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.47
Consensus pattern (43 bp):
CTTTCTGGTCAGCTCTTATGAGCTTCTATTCAACTCTTTCGAG
Found at i:10921206 original size:23 final size:23
Alignment explanation
Indices: 10921163--10921206 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
10921153 AAAATATTTT
* *
10921163 TATATTTACTTTTTTTTATAAGC
1 TATATTTACTTTTTCTCATAAGC
10921186 TATATTTACTTTTTCTCATAA
1 TATATTTACTTTTTCTCATAA
10921207 ACCAAACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.02, T:0.59
Consensus pattern (23 bp):
TATATTTACTTTTTCTCATAAGC
Found at i:10921897 original size:26 final size:31
Alignment explanation
Indices: 10921868--10921926 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 31
10921858 TTTTTAAAAG
10921868 TTAAATAAC-A-AAT-AAA-AAATT-AATAA
1 TTAAATAACTACAATAAAATAAATTGAATAA
10921894 TTAAATAACTACAATAAAATAAATTGAATAA
1 TTAAATAACTACAATAAAATAAATTGAATAA
10921925 TT
1 TT
10921927 GAGTACTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 9 0.32
27 1 0.04
28 3 0.11
29 3 0.11
30 5 0.18
31 7 0.25
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (31 bp):
TTAAATAACTACAATAAAATAAATTGAATAA
Found at i:10926922 original size:9 final size:10
Alignment explanation
Indices: 10926901--10926925 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10926891 CTGACTTTGG
10926901 AAAATTGTAA
1 AAAATTGTAA
10926911 AAAATTGTAA
1 AAAATTGTAA
10926921 AAAAT
1 AAAAT
10926926 AATTATGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (10 bp):
AAAATTGTAA
Found at i:10928939 original size:298 final size:298
Alignment explanation
Indices: 10928403--10929478 Score: 1791
Period size: 298 Copynumber: 3.6 Consensus size: 298
10928393 TAGAGTGTTA
**
10928403 CAGATTTGATATCGATGATTTGACAACACTGATGAC-AGAAGGTTTGAATTTTGGTTTCTTACCT
1 CAGATTTGATATCGATGATTTGACAACACTGATGACAAG-AGGTTCAAATTTTGGTTTCTTACCT
* *
10928467 CTTCATGCTCATCGTATGAGGT-AAGAGAAGAATGACTTGACTCCCAAAACTTCCACCACGAGAC
65 CTTCATGCTCATCGTATGAGGTAAAG-GAAGAATGACCTGACTCCCAAAACTTCCATCACGAGAC
* * * * *
10928531 ATCGGTAAGCTACATAGACCGGATTTGATAACAATAATAGAGTAAGCATCAATGCCACTATTGCA
129 ATCGGTAAGCTACATGGACCAGCTTTGATAACAACAATAGAGTAAGCATCAATGCCACTATTGCG
* * * * * *
10928596 TTTTCTATTAAAG-GGAAAAAATCGACCATTGAAGCACTACTTAGCCTTAAGCATTTGAGTCTTT
194 TTTTCTATTAACGAGAAAAAAAT-AACCATTGAAGCACTGCTTAGCCTTAAGCATTTGAGCCCTT
*
10928660 CAAAGTCCTA-ACCTTTGCTACTGAAATGGAGTTAGAGATGT
258 CAAAGTCCTACA-CTTTGCTACTGAAATGGAGTCAGAGATGT
* * * *
10928701 CAGATTTGATATCGATGATTTGACAACATTGATGACAAGAGGCTCGAATCTTGGTTTCTTACCTC
1 CAGATTTGATATCGATGATTTGACAACACTGATGACAAGAGGTTCAAATTTTGGTTTCTTACCTC
*
10928766 TTCATGCTCATCGTATGAGGTAAAGGAAGAATGACTTGACTCCCAAAACTTCCATCACGAGACAT
66 TTCATGCTCATCGTATGAGGTAAAGGAAGAATGACCTGACTCCCAAAACTTCCATCACGAGACAT
*
10928831 CGGTAAGCTACATGGACTAGCTTTGATAACAACAATAGAGTAAGCATCAATGCCACTATTGCGTT
131 CGGTAAGCTACATGGACCAGCTTTGATAACAACAATAGAGTAAGCATCAATGCCACTATTGCGTT
10928896 TTCTATTAACGAGAAAAAAATAACCATTGAAGCACTGCTTAGCCTTAAGCATTTGAGCCCTTCAA
196 TTCTATTAACGAGAAAAAAATAACCATTGAAGCACTGCTTAGCCTTAAGCATTTGAGCCCTTCAA
10928961 AGTCCTACACTTTGCTACTGAAATGGAGTCAGAGATGT
261 AGTCCTACACTTTGCTACTGAAATGGAGTCAGAGATGT
*
10928999 CAGATTTGATATCGATGATTTGACAACACTGATGACAGGAGGTTCAAATTTTGGTTTCTTACCTC
1 CAGATTTGATATCGATGATTTGACAACACTGATGACAAGAGGTTCAAATTTTGGTTTCTTACCTC
* * *
10929064 TTCATGTTCATCGTATGAGGTAAGGGAAGAATGACCTAACTCCCAAAACTTCCATCACGAGACAT
66 TTCATGCTCATCGTATGAGGTAAAGGAAGAATGACCTGACTCCCAAAACTTCCATCACGAGACAT
*
10929129 CGGTAAGCTACATGGACTAGCTTTGATAACAACAATAGAGTAAGCATCAATGCCACTATTGCGTT
131 CGGTAAGCTACATGGACCAGCTTTGATAACAACAATAGAGTAAGCATCAATGCCACTATTGCGTT
10929194 TTCTATTAACGAGAAAAAAATAACCATTGAAGCACTGCTTAGCCTTAAGCATTTGAGCCCTTCAA
196 TTCTATTAACGAGAAAAAAATAACCATTGAAGCACTGCTTAGCCTTAAGCATTTGAGCCCTTCAA
10929259 AGTCCTACACTTTGCTACTGAAATGGAGTCAGAGATGT
261 AGTCCTACACTTTGCTACTGAAATGGAGTCAGAGATGT
*
10929297 CAGATTTGATATCGATGATTTGACAACACTGATGACAGGAGGTTCAAATTTTGGTTTCTTACCTC
1 CAGATTTGATATCGATGATTTGACAACACTGATGACAAGAGGTTCAAATTTTGGTTTCTTACCTC
* * **
10929362 TTCATGTTCATCGTATGAGGTAAGGGAAGAATGACCTGACTCCCAAAACTTCCATTGCGAGACAT
66 TTCATGCTCATCGTATGAGGTAAAGGAAGAATGACCTGACTCCCAAAACTTCCATCACGAGACAT
*
10929427 CGGTAAGCTACATGGACCAACTTTGATAACAACAATAGAGTAAGCATCAATG
131 CGGTAAGCTACATGGACCAGCTTTGATAACAACAATAGAGTAAGCATCAATG
10929479 GCATTATCGG
Statistics
Matches: 742, Mismatches: 32, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
298 728 0.98
299 14 0.02
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (298 bp):
CAGATTTGATATCGATGATTTGACAACACTGATGACAAGAGGTTCAAATTTTGGTTTCTTACCTC
TTCATGCTCATCGTATGAGGTAAAGGAAGAATGACCTGACTCCCAAAACTTCCATCACGAGACAT
CGGTAAGCTACATGGACCAGCTTTGATAACAACAATAGAGTAAGCATCAATGCCACTATTGCGTT
TTCTATTAACGAGAAAAAAATAACCATTGAAGCACTGCTTAGCCTTAAGCATTTGAGCCCTTCAA
AGTCCTACACTTTGCTACTGAAATGGAGTCAGAGATGT
Found at i:10932926 original size:16 final size:16
Alignment explanation
Indices: 10932903--10932942 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
10932893 CGTTTGGTTC
10932903 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
10932919 GGTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
10932935 GCTGTAAT
1 GCTGTAAT
10932943 AATAATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.33, T:0.28
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:10934487 original size:49 final size:49
Alignment explanation
Indices: 10934410--10934513 Score: 163
Period size: 49 Copynumber: 2.1 Consensus size: 49
10934400 AAAAAAATTC
* * *
10934410 AAATTAAAATTGAGTTTAATATCATGAATCAAAAGATGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGATCAACACTTTATA
* *
10934459 AAATTAAAATTAAGTTCAATATCGTGAATCAAAAGCTCAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGATCAACACTTTATA
10934508 AAATTA
1 AAATTA
10934514 TAACACATGA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.32
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAAGATCAACACTTTATA
Found at i:10936674 original size:27 final size:28
Alignment explanation
Indices: 10936635--10936705 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 28
10936625 TCAATAATAA
*
10936635 ATGTAATTAAATTATAAGTATTT-TTAAAT
1 ATGTAA-T-AATTATAAATATTTGTTAAAT
10936664 ATGTAATAATTATCACAATATTTGTTAAAT
1 ATGTAATAATTAT-A-AATATTTGTTAAAT
10936694 -T-T-ATAATTATAA
1 ATGTAATAATTATAA
10936706 CAAGTACAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
25 1 0.03
26 1 0.03
27 14 0.37
28 3 0.08
29 13 0.34
30 6 0.16
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (28 bp):
ATGTAATAATTATAAATATTTGTTAAAT
Found at i:10949501 original size:48 final size:48
Alignment explanation
Indices: 10949449--10949592 Score: 270
Period size: 48 Copynumber: 3.0 Consensus size: 48
10949439 TAGCCTGCTT
10949449 CAGCACCCCAATTTTGACCAAAATCTTTTGCATTTTGACCAGGTCCAA
1 CAGCACCCCAATTTTGACCAAAATCTTTTGCATTTTGACCAGGTCCAA
10949497 CAGCACCCCAATTTTGACCAAAATCTTTTGCATTTTGACCAGGTCCAA
1 CAGCACCCCAATTTTGACCAAAATCTTTTGCATTTTGACCAGGTCCAA
* *
10949545 CAGCACACCAAATTTGACCAAAATCTTTTGCATTTTGACCAGGTCCAA
1 CAGCACCCCAATTTTGACCAAAATCTTTTGCATTTTGACCAGGTCCAA
10949593 AGTAATCTTG
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 94 1.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.28
Consensus pattern (48 bp):
CAGCACCCCAATTTTGACCAAAATCTTTTGCATTTTGACCAGGTCCAA
Found at i:10955289 original size:31 final size:31
Alignment explanation
Indices: 10955239--10955318 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
10955229 GTTAATATTC
* *
10955239 CATTT-GGTATTTGAGTTTGGCTTCAATGTT
1 CATTTAGGTACTTGAATTTGGCTTCAATGTT
* *
10955269 CATTTAGGTACTTGAATTTGGTTTCAGTGTT
1 CATTTAGGTACTTGAATTTGGCTTCAATGTT
10955300 CATTTAGGTACTTGAATTT
1 CATTTAGGTACTTGAATTT
10955319 TTTCAATTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 5 0.11
31 40 0.89
ACGTcount: A:0.20, C:0.10, G:0.21, T:0.49
Consensus pattern (31 bp):
CATTTAGGTACTTGAATTTGGCTTCAATGTT
Found at i:10970449 original size:2 final size:2
Alignment explanation
Indices: 10970442--10970473 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
10970432 TTTCCTGCCT
10970442 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
10970474 AATTCTCTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:10984445 original size:70 final size:69
Alignment explanation
Indices: 10984370--10984527 Score: 172
Period size: 70 Copynumber: 2.3 Consensus size: 69
10984360 TTAGAGTTCA
* * * *
10984370 CTAATTTAAGATCACAACTCCACCCAATAGTTCTTTAATTTACGATCATGAACAATTCATTCATA
1 CTAATTTAAGATCACAACTCCACCCAATAATTCGTTAATTTAAGATCACGAACAATT-ATTCATA
10984435 GCTTG
65 GCTTG
* ** * * * * * *
10984440 TTAATTTAAGATTGCAACTTCACTCAATAATTCGTTGATTTAAGATCACGAATAATTTTTTATAG
1 CTAATTTAAGATCACAACTCCACCCAATAATTCGTTAATTTAAGATCACGAACAATTATTCATAG
10984505 CTTG
66 CTTG
* *
10984509 CTGATTTAAGATCATAACT
1 CTAATTTAAGATCACAACT
10984528 TCACTTAACA
Statistics
Matches: 70, Mismatches: 18, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
69 24 0.34
70 46 0.66
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (69 bp):
CTAATTTAAGATCACAACTCCACCCAATAATTCGTTAATTTAAGATCACGAACAATTATTCATAG
CTTG
Found at i:10984447 original size:140 final size:140
Alignment explanation
Indices: 10984127--10984437 Score: 367
Period size: 140 Copynumber: 2.2 Consensus size: 140
10984117 CAATTCATTG
* ** * * * * ** ** *
10984127 ATTTATGATCATGAATTATTCACTCATAGCTCACGAATTTACAATTGCAACTTTACTTAAACAGT
1 ATTTACGATCATGAACAATTAATTCATAGCTCACCAATTTACGATCACCGCTTTACTTAAACAAT
* * * * *
10984192 GTGTTGATTTAAGATCATAATAGATATTTTATATCTCACTAATGTAATATCGCAAATCCACCCAA
66 ATGTTGATTTAAGATCACAATAGATATTTTAGATCTCACTAATGTAAGATCACAAATCCACCCAA
10984257 CAGTTTATTA
131 CAGTTTATTA
* *
10984267 ATTTACGATCATGAACGATTAATTCATCGCTCACCAATTTACGATCACCGCTTTACTTAAACAAT
1 ATTTACGATCATGAACAATTAATTCATAGCTCACCAATTTACGATCACCGCTTTACTTAAACAAT
* *
10984332 ATGTTGATTTAAGATCACAACT-GATATTTTAGAGT-TCACTAATTTAAGATCACAACTCCACCC
66 ATGTTGATTTAAGATCACAA-TAGATATTTTAGA-TCTCACTAATGTAAGATCACAAATCCACCC
*
10984395 AATAGTTCT-TTA
129 AACAGTT-TATTA
*
10984407 ATTTACGATCATGAACAATTCATTCATAGCT
1 ATTTACGATCATGAACAATTAATTCATAGCT
10984438 TGTTAATTTA
Statistics
Matches: 144, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
140 141 0.98
141 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (140 bp):
ATTTACGATCATGAACAATTAATTCATAGCTCACCAATTTACGATCACCGCTTTACTTAAACAAT
ATGTTGATTTAAGATCACAATAGATATTTTAGATCTCACTAATGTAAGATCACAAATCCACCCAA
CAGTTTATTA
Found at i:10984528 original size:69 final size:69
Alignment explanation
Indices: 10984334--10984673 Score: 227
Period size: 69 Copynumber: 4.9 Consensus size: 69
10984324 TAAACAATAT
* * * ** * *
10984334 GTTGATTTAAGATCAC-AACTGATATTTTAGAG-TTCACTAATTTAAGATCACAACTCCACCCAA
1 GTTGATTTAAGATCACGAA-TGATTTTTTATAGCTT-GCTAATTTAAGATCGTAACTTCACTCAA
10984397 TAGTTC
64 TAGTTC
* * * * ** * * * * *
10984403 TTTAATTTACGATCATGAACAATTCATTCATAGCTTGTTAATTTAAGATTGCAACTTCACTCAAT
1 GTTGATTTAAGATCACGAATGATT-TTTTATAGCTTGCTAATTTAAGATCGTAACTTCACTCAAT
*
10984468 AATTC
65 AGTTC
* * * * *
10984473 GTTGATTTAAGATCACGAATAATTTTTTATAGCTTGCTGATTTAAGATCATAACTTCACTTAACA
1 GTTGATTTAAGATCACGAATGATTTTTTATAGCTTGCTAATTTAAGATCGTAACTTCACTCAATA
10984538 GTTC
66 GTTC
** * * * * * * * * * * *
10984542 ACTGATTTACGATCACGACTGATTTTTTGTAAC-TCCACAATTTTATATCGTAATTTCTCTTAAT
1 GTTGATTTAAGATCACGAATGATTTTTTATAGCTTGC-TAATTTAAGATCGTAACTTCACTCAAT
10984606 AGTTC
65 AGTTC
* * * * ** *
10984611 GTTGATTTAAAATTACAAATGATTTTTCATAGCTTGCCGATTTAAGATTGTAACTTCACTCAA
1 GTTGATTTAAGATCACGAATGATTTTTTATAGCTTGCTAATTTAAGATCGTAACTTCACTCAA
10984674 CAATTTACCA
Statistics
Matches: 200, Mismatches: 66, Indels: 10
0.72 0.24 0.04
Matches are distributed among these distances:
68 2 0.01
69 141 0.70
70 55 0.28
71 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.39
Consensus pattern (69 bp):
GTTGATTTAAGATCACGAATGATTTTTTATAGCTTGCTAATTTAAGATCGTAACTTCACTCAATA
GTTC
Found at i:10991937 original size:25 final size:25
Alignment explanation
Indices: 10991909--10991963 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
10991899 CTCGGTATAT
10991909 GGCTCCT-TGGAGCTT-CTAGATTAAA
1 GGCTCCTATGG-GCTTCCT-GATTAAA
* *
10991934 GGCTCTTATGGGCTTCCTGATTAAT
1 GGCTCCTATGGGCTTCCTGATTAAA
10991959 GGCTC
1 GGCTC
10991964 TTCAGAGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.35
Consensus pattern (25 bp):
GGCTCCTATGGGCTTCCTGATTAAA
Found at i:10991973 original size:25 final size:24
Alignment explanation
Indices: 10991918--10991979 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
10991908 TGGCTCCTTG
10991918 GAGCTTCTAGATTAAAGGCTCTTAT
1 GAGCTTCT-GATTAAAGGCTCTTAT
* *
10991943 GGGCTTCCTGATTAATGGCTCTTCA-
1 GAGCTT-CTGATTAAAGGCTCTT-AT
10991968 GAGCTTTCTGAT
1 GAGC-TTCTGAT
10991980 ATTAGCTCGC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 26 0.84
26 5 0.16
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (24 bp):
GAGCTTCTGATTAAAGGCTCTTAT
Found at i:10994148 original size:45 final size:45
Alignment explanation
Indices: 10994017--10994683 Score: 324
Period size: 44 Copynumber: 15.0 Consensus size: 45
10994007 TGGAGTAGGT
* * * *
10994017 TGAAGATAACAGATCTTGCATTCCTGTACTGACAGCGAAGCAAAT
1 TGAAGATAACACATCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
* * *
10994062 TGAAGA-CAC-CAGTCTTGCCTTCCTGTACTGACATCGGAGCAGAC
1 TGAAGATAACACA-TCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
* * * *
10994106 TAAAGATAACACATCTTGCATTCATGTATTGACAGCGAAGCAGA-
1 TGAAGATAACACATCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
*
10994150 TCG-A-AT-ACACCAGCCTTGCCTTCCTGTACTGACAGCTG-AGCAGAC
1 T-GAAGATAACA-CA-TCTTGCCTTCCTGTACTGACAGC-GAAGCAGAC
* * *
10994195 TGAAGATAAAAGATCTTGCCTTCCTGTACTGACAGCGAAGCA-AA
1 TGAAGATAACACATCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
* * * *
10994239 TCGAAGAT-AC-CAGCCTTGCCTCCCTGGT-TTGACAGCGGAGCAGAC
1 T-GAAGATAACACA-TCTTGCCTTCCT-GTACTGACAGCGAAGCAGAC
** * * * **
10994284 TGAAGATAGTAGATTTTGCCTTCCTCTACTGGTAGCGAAGCAGA-
1 TGAAGATAACACATCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
* * * * *
10994328 TCGAAG---ACACGAGCCTTGCCTCCCTAGGT-TTG-TAGCGGAGCAGAC
1 T-GAAGATAACAC-A-TCTTGCCTTCCT--GTACTGACAGCGAAGCAGAC
* *
10994373 TGAAGATAACAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGA-
1 TGAAGATAACACATCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
* * * * * * *
10994417 TCGAAGACAAGA-GTCTTGCCTCCCTGGT-TTGACAGCGAAGTAGAG
1 T-GAAGATAACACATCTTGCCTTCCT-GTACTGACAGCGAAGCAGAC
** * * *
10994462 TGAAGATAGTAGATATTGCCTTCCTATACTGACAGCGAAGCAGA-
1 TGAAGATAACACATCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
* ** * *** * *
10994506 TCGAAGA-CAC-CGGCCTTGCCTCCCTGGGTTTATAGCGAAGCAGAC
1 T-GAAGATAACAC-ATCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
** * * *
10994551 TGAAGATAGTAGATATTGCCTTCTTGTACTGACAGCGAAGCAGA-
1 TGAAGATAACACATCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
* * * *** * * *
10994595 TCGAAGA-CAC-CAGCCTTGTCTTCCTGGGTTGACAGTGGAGCAGAA
1 T-GAAGATAACACA-TCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
** * * *
10994640 TGAAGATAGTAGATTTTGCCTTCCTGTACTGACAGTGAAGCAGA
1 TGAAGATAACACATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
10994684 TCGAAGACCC
Statistics
Matches: 456, Mismatches: 121, Indels: 90
0.68 0.18 0.13
Matches are distributed among these distances:
42 4 0.01
43 10 0.02
44 214 0.47
45 214 0.47
46 9 0.02
47 5 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (45 bp):
TGAAGATAACACATCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
Found at i:10994170 original size:89 final size:88
Alignment explanation
Indices: 10994017--10994882 Score: 827
Period size: 89 Copynumber: 9.8 Consensus size: 88
10994007 TGGAGTAGGT
* * * * *
10994017 TGAAGATAACAGATCTTGCATTCCTGTACTGACAGCGAAGCAAATTGAAGACACCAGTCTTGCCT
1 TGAAGATAATAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * *
10994082 TCCTGTACTGACATCGGAGCAGAC
66 CCCTGT-TTGACAGCGGAGCAGAC
* * * * * * *
10994106 TAAAGATAACACATCTTGCATTCATGTATTGACAGCGAAGCAGATCGAATACACCAGCCTTGCCT
1 TGAAGATAATAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * *
10994171 TCCTGTACTGACAGCTGAGCAGAC
66 CCCTGT-TTGACAGCGGAGCAGAC
* * *
10994195 TGAAGATAAAAGATCTTGCCTTCCTGTACTGACAGCGAAGCAAATCGAAGATACCAGCCTTGCCT
1 TGAAGATAATAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
10994260 CCCTGGTTTGACAGCGGAGCAGAC
66 CCCT-GTTTGACAGCGGAGCAGAC
* * * ** *
10994284 TGAAGATAGTAGATTTTGCCTTCCTCTACTGGTAGCGAAGCAGATCGAAGACACGAGCCTTGCCT
1 TGAAGATAATAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
10994349 CCCTAGGTTTG-TAGCGGAGCAGAC
66 CCCT--GTTTGACAGCGGAGCAGAC
* * ** *
10994373 TGAAGATAACAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACAAGAGTCTTGCCT
1 TGAAGATAATAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * *
10994438 CCCTGGTTTGACAGCGAAGTAGAG
66 CCCT-GTTTGACAGCGGAGCAGAC
* * * *
10994462 TGAAGATAGTAGATATTGCCTTCCTATACTGACAGCGAAGCAGATCGAAGACACCGGCCTTGCCT
1 TGAAGATAATAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
10994527 CCCTGGGTTT-ATAGCGAAGCAGAC
66 CCCT--GTTTGACAGCGGAGCAGAC
* * * *
10994551 TGAAGATAGTAGATATTGCCTTCTTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGTCT
1 TGAAGATAATAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * *
10994616 TCCTGGGTTGACAGTGGAGCAGAA
66 CCCT-GTTTGACAGCGGAGCAGAC
* * *
10994640 TGAAGATAGTAGATTTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGAC-CCTAGCCTTGCC
1 TGAAGATAATAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACC-AGCCTTGCC
10994704 TCCCTGAGTTTG-CAG-GAGAGCAGAC
65 TCCCT--GTTTGACAGCG-GAGCAGAC
* ** ** * * * * *
10994729 TAAAGAT-AGCGTATCATTGTTTTCC-GTATTGGCAGCGAAGCA-ATCGAAGACACTAGGCTTGT
1 TGAAGATAATAG-ATC-TTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGC
* * *
10994791 CTCCCTAAATTTG-CAGTGGAGTAGAC
64 CTCCCT--GTTTGACAGCGGAGCAGAC
* * ** ** *
10994817 TAAAAATAGCAGATCTTATCTTCCTGTACT-AGCAGCGAAGCAGATCGACA-ACACCAGCTTTGC
1 TGAAGATAATAGATCTTGCCTTCCTGTACTGA-CAGCGAAGCAGATCGA-AGACACCAGCCTTGC
10994880 CTC
64 CTC
10994883 TCTGAGTGTG
Statistics
Matches: 657, Mismatches: 103, Indels: 34
0.83 0.13 0.04
Matches are distributed among these distances:
87 7 0.01
88 73 0.11
89 552 0.84
90 25 0.04
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (88 bp):
TGAAGATAATAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTGTTTGACAGCGGAGCAGAC
Found at i:10995686 original size:7 final size:7
Alignment explanation
Indices: 10995676--10995700 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10995666 AATACAAAAG
10995676 GAAATCT
1 GAAATCT
10995683 GAAATCT
1 GAAATCT
10995690 GAAATCT
1 GAAATCT
10995697 GAAA
1 GAAA
10995701 AGGTGGCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (7 bp):
GAAATCT
Found at i:10996453 original size:3 final size:3
Alignment explanation
Indices: 10996447--10996494 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
10996437 TACTACTACC
* * * *
10996447 ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ACT AGT GTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10996495 TATATTAGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:10996465 original size:15 final size:15
Alignment explanation
Indices: 10996447--10996494 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
10996437 TACTACTACC
*
10996447 ATTATTATTATTATT
1 ATTACTATTATTATT
10996462 ATTACTATTATTATT
1 ATTACTATTATTATT
* *
10996477 ATTACTAGTGTTATT
1 ATTACTATTATTATT
10996492 ATT
1 ATT
10996495 TATATTAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.60
Consensus pattern (15 bp):
ATTACTATTATTATT
Found at i:10996503 original size:18 final size:18
Alignment explanation
Indices: 10996449--10996503 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
10996439 CTACTACCAT
*
10996449 TATTATTATTATTATTAC
1 TATTATTATTATTATTAG
*
10996467 TATTATTATTATTACTAG
1 TATTATTATTATTATTAG
*
10996485 TGTTATTATT-TATATTAG
1 TATTATTATTAT-TATTAG
10996503 T
1 T
10996504 TCATATATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 1 0.03
18 31 0.97
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (18 bp):
TATTATTATTATTATTAG
Found at i:11001945 original size:43 final size:42
Alignment explanation
Indices: 11001864--11001946 Score: 96
Period size: 43 Copynumber: 2.0 Consensus size: 42
11001854 CCTGAAGAAG
* **
11001864 AAAAAGAGACCAAGGTGAAAACCCACAAATGGTGCTTTGAAA
1 AAAAAGAGACCAAAGTGAAAACCCACAAATGGCACTTTGAAA
* *
11001906 AAAAAGAAGACTAAAGTGAAAACCCGCAAA-GGACACTTTGA
1 AAAAAG-AGACCAAAGTGAAAACCCACAAATGG-CACTTTGA
11001947 GTTTAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
42 8 0.24
43 26 0.76
ACGTcount: A:0.49, C:0.17, G:0.20, T:0.13
Consensus pattern (42 bp):
AAAAAGAGACCAAAGTGAAAACCCACAAATGGCACTTTGAAA
Found at i:11003402 original size:89 final size:88
Alignment explanation
Indices: 11003286--11005306 Score: 2013
Period size: 89 Copynumber: 22.7 Consensus size: 88
11003276 GAGTAGGTTA
* * * *
11003286 AAGATAACAGATCTTGCCTTTCTGTACTGACAGCGAAGCAGATCGAAGACACTAGCTTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
*
11003351 CTGTACTGACAGCGGAGCAGACTG
66 CTGT-TTGACAGCGGAGCAGACTG
* * *
11003375 AAGATAGCAGATCTTACCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACCAGCCTTGCTTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* *
11003440 CTGTACTGACAGCAGAGCAGACTG
66 CTGT-TTGACAGCGGAGCAGACTG
* * *
11003464 AAGATAGCATATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACTAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* *
11003529 CTGTACTGACAGCGGAGCAAACTG
66 CTGT-TTGACAGCGGAGCAGACTG
* * * *
11003553 TAG-TAGCAGATCTTGCCTTCCTGTACTGACAGCTAAGCAAATCGAAGACACCAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* *
11003617 CTGGGTTTG-CAGCGGAGTAGACTA
66 CT--GTTTGACAGCGGAGCAGACTG
* * * * * *
11003641 AAGATAGCAGATTTTTCCTTCATGTACTAACAGCGAAGCAGATTGAAGACACCAGCCTTGCCTTT
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* *
11003706 CTGGGTTGACAGCAGAGCAGACTG
66 CT-GTTTGACAGCGGAGCAGACTG
* * * * * * *
11003730 AAGATAGTAGATCTTGCCTTCCTGTATTGATAGCGAAGTAGATCTAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
*
11003795 CTGGGTTT-ACAGCGGAGCGGACTG
66 CT--GTTTGACAGCGGAGCAGACTG
* * *
11003819 AAGATAGTAGATCTTGCCATT-CTGTACTGACAGCGAAGCAGATCGAAGACATCAGTCTTGCCTT
1 AAGATAGCAGATCTTGCC-TTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTT
* *
11003883 CCTAGGTTGACAGCAGAGCAGACTG
65 CCT-GTTTGACAGCGGAGCAGACTG
* *
11003908 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAACAGATCGAAGACACCAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* *
11003973 CTGTACTGACAGCAGAGCAGACTG
66 CTGT-TTGACAGCGGAGCAGACTG
* * ** * *
11003997 AAGATAACACATCTTGCCTTAATGTACTGACAACGAAGCAGATCGAATACACCAGCCTTGCC-TC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* *
11004061 CTTGGGTTTG-CAGCGGAGCAAACTA
66 C-T--GTTTGACAGCGGAGCAGACTG
* * * * * * *
11004086 AAGATAGCAGATCTTGCCTTCCTGTACTGATAGCGAAGTAAATCGAAGACACTAGTCTTACCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* *
11004151 CTGGGTTGACAGTGGAGCAGACTG
66 CT-GTTTGACAGCGGAGCAGACTG
*
11004175 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGTCTTGCC-TC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* * * *
11004239 TCTGGGTTAACAGCAGAGCAAACTG
66 -CT-GTTTGACAGCGGAGCAGACTG
* * * * ** *
11004264 AAGATAGTAGATCTTGCCTTCCTATACTGACAACGAAGCAAATCTCAGACACCAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* * *
11004329 CTGGGTTTG-CAACGAAGCAGATTG
66 CT--GTTTGACAGCGGAGCAGACTG
* * * *
11004353 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGGAGCAGA-CTGAAGATAACAGATCTTGCCT
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-GAAGACACCAG-CCTTGCCT
* *
11004417 TCCTGTACTGACAGCGAAGCAGATCT-
64 TCCTGT-TTGACAGCGGAGCAGA-CTG
* * ** * * * * * *
11004443 AAGACACCAGATCTTGTATTCCTTTGCTGACAGCGGAGCAGA-CTGAAGATAGCAGATCTTGCCT
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-GAAGACACCAG-CCTTGCCT
* *
11004507 TCCTGTATTGACAGTGAAGCAGA-TCG
64 TCCTGT-TTGACAGCGGAGCAGACT-G
* * * * * *
11004533 AAGACACCAG-TCTTGCCTTCCTATACTGACACCGAAGCAGATCGAAGACACCAGCCTTACCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* *
11004597 CTAGGTTTG-CAGCGAAGCAGACTA
66 CT--GTTTGACAGCGGAGCAGACTG
* *
11004621 AAGATAGCAGATCTTACCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
*
11004686 CTGGGTTGACAGCGGAGCAGACTG
66 CT-GTTTGACAGCGGAGCAGACTG
* * * * * *
11004710 AAGATAACAGATATTGCCTTCCTATACTGACAGTGAAGCAGATCGAAGACACCAACATTGCC-TC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
*
11004774 TCTAGGTTTG-TAGCGGAGCAGACTG
66 -CT--GTTTGACAGCGGAGCAGACTG
* * * * * ** ** *
11004799 AAGATAACAGATCTTACCTTCCTATACCGACAACGAAGCAGATCGAAGACAAGAATCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
* * *
11004864 CTGGGTTGACAGCGGAGCAGAGTA
66 CT-GTTTGACAGCGGAGCAGACTG
* * * * * * * *
11004888 AATATAGTAGATATTACCTTCTTGTACTAACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
11004953 CTGGGTTTG-CAGCGGAGCAGACTG
66 CT--GTTTGACAGCGGAGCAGACTG
* * * * *
11004977 AAGATAGCAAATCTTACCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACCAACCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
11005042 CTAGGTTT-ACAGCGGAGCAGACTG
66 CT--GTTTGACAGCGGAGCAGACTG
* * * * *
11005066 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCAAAGCAGATTGAAGACACTATCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
*
11005131 CTGAGTTTG-CAGCGGAGCAGACTA
66 CT--GTTTGACAGCGGAGCAGACTG
*** * ** *
11005155 AAGATAGC-GTATCATTATTTTCCTGTATTGGTAGCGAAGCA-ATCGAAGACACTAGCCTTGCC-
1 AAGATAGCAG-ATC-TTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
11005217 TCTCTAAGTTTG-CAACGGAGTAGACT-
64 TC-CT--GTTTGACAGCGGAGCAGACTG
* * * *
11005243 AACAACAGCAAATCTTGCCTTCCTGTACTGGCAGCGAAGCAGATCGACA-ACACCAGCCTTGCCT
1 AA-GATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGA-AGACACCAGCCTTGCCT
11005307 CTCTGAGTTT
Statistics
Matches: 1629, Mismatches: 258, Indels: 89
0.82 0.13 0.05
Matches are distributed among these distances:
88 160 0.10
89 1305 0.80
90 161 0.10
91 3 0.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (88 bp):
AAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTTC
CTGTTTGACAGCGGAGCAGACTG
Found at i:11005150 original size:44 final size:42
Alignment explanation
Indices: 11004918--11005160 Score: 130
Period size: 44 Copynumber: 5.5 Consensus size: 42
11004908 CTTGTACTAA
* *
11004918 CAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTTG
1 CAGCGAAGCAGATTGAAGATACCATCCTTGCCTCCCT--GTTTG
* * * * * *
11004962 CAGCGGAGCAGACTGAAGATAGCAAAT-CTTACCTTCCTGTACTG
1 CAGCGAAGCAGATTGAAGATA-C-CATCCTTGCCTCCCTGT-TTG
* * * * *
11005006 ACAGTGAAGCAGATCGAAGACACCAACCTTGCCTCCCTAGGTTTA
1 -CAGCGAAGCAGATTGAAGATACCATCCTTGCCTCCCT--GTTTG
* * * * *
11005051 CAGCGGAGCAGACTGAAGATAGCAGAT-CTTGCCTTCCTGTACTG
1 CAGCGAAGCAGATTGAAGATA-C-CATCCTTGCCTCCCTGT-TTG
* * *
11005095 ACAGCAAAGCAGATTGAAGACACTATCCTTGCCTCCCTGAGTTTG
1 -CAGCGAAGCAGATTGAAGATACCATCCTTGCCTCCCT--GTTTG
* * *
11005140 CAGCGGAGCAGACTAAAGATA
1 CAGCGAAGCAGATTGAAGATA
11005161 GCGTATCATT
Statistics
Matches: 144, Mismatches: 41, Indels: 28
0.68 0.19 0.13
Matches are distributed among these distances:
43 7 0.05
44 74 0.51
45 57 0.40
46 6 0.04
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (42 bp):
CAGCGAAGCAGATTGAAGATACCATCCTTGCCTCCCTGTTTG
Found at i:11006929 original size:21 final size:21
Alignment explanation
Indices: 11006868--11006929 Score: 54
Period size: 21 Copynumber: 2.8 Consensus size: 21
11006858 TAATATTAAT
*
11006868 TTATCAT-TATTACTATTATTA
1 TTATCATATATTATTA-TATTA
* *
11006889 CTATCATCATCATTTTTTATATTA
1 TTATCAT-AT-A-TTATTATATTA
11006913 TTATCATATATTATTAT
1 TTATCATATATTATTAT
11006930 TTAATTTCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
21 12 0.38
22 1 0.03
23 3 0.09
24 12 0.38
25 4 0.12
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.56
Consensus pattern (21 bp):
TTATCATATATTATTATATTA
Found at i:11017120 original size:81 final size:81
Alignment explanation
Indices: 11017034--11017734 Score: 796
Period size: 81 Copynumber: 8.7 Consensus size: 81
11017024 GAGACCTTAA
* * * *
11017034 CAGACAAGGAA-AAACAAGAGAAGGTGCAGCAGCCCGAGAGTTTACCAGATAATAAAGGGAAAGA
1 CAGACAAGGAAGAGA-AAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGAAAGGGAAAGA
* *
11017098 TGCGCCTAAGATTTTAC
65 TGCGCCCAAGAGTTTAC
* * * * * * * *
11017115 TAGACAAGGAAGAGAAAGAGAAGACACGGCAGCCCGAGAGTTTACTAGATAAGGAAGGGCAAGAT
1 CAGACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGAAAGGGAAAGAT
**
11017180 GCATCCAAGAGTTTAC
66 GCGCCCAAGAGTTTAC
* * * *
11017196 GAGACAAGGAAGAGAAAGAGAAGGCACCGCAGCCCGAGAGTTTACCAGACAAGGAAGGGAAAGAT
1 CAGACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGAAAGGGAAAGAT
* *
11017261 GCACCCAAGAATTTAC
66 GCGCCCAAGAGTTTAC
*
11017277 CAAACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAA-AGAAGGGAAAGA
1 CAGACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGA-AAGGGAAAGA
* *
11017341 TACACCCAAGAGTTTAC
65 TGCGCCCAAGAGTTTAC
* * *
11017358 CAGACAAGGAAGAGAAAAAGAAGGTGCAGCAGCCCGAGAGTTTACTAGACAAGGAAA-GGAAAGA
1 CAGACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAA-GAAAGGGAAAGA
* *
11017422 TGCGCCTAAGAGTTTAT
65 TGCGCCCAAGAGTTTAC
* * * * **
11017439 CAGACAAGGAAGAGAAAGAGGAGGCGCAACAGCCCGAGAGTTTACAAGACAAAAAAGATAAAGAT
1 CAGACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGAAAGGGAAAGAT
*
11017504 GTGCCCAAGAGTTTAC
66 GCGCCCAAGAGTTTAC
* * * * * * * * *
11017520 TAGACAAGGAAGAAAAAGAGGAGGCACAACAGCCAGAGAGTTTACCAAACAAGGAAGAGAAAGAT
1 CAGACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGAAAGGGAAAGAT
*
11017585 GTGCCCAAGAGTTTAC
66 GCGCCCAAGAGTTTAC
* * * * ** * * *
11017601 CAGACAAGGAAGTGAATGAGGAGGCGCATCAGCTTGAGAGTTTACCAGATAAGGAAGAGAAAGAT
1 CAGACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGAAAGGGAAAGAT
**
11017666 AAGCCCAAGAGTTTAC
66 GCGCCCAAGAGTTTAC
* * * *
11017682 CAGACAAGGAAGAGAACGAGGAGGCACAGCAGTCCGAGAGTTTACCAGACAAG
1 CAGACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAG
11017735 GCTGCAAATC
Statistics
Matches: 538, Mismatches: 77, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
80 3 0.01
81 530 0.99
82 4 0.01
83 1 0.00
ACGTcount: A:0.42, C:0.17, G:0.29, T:0.12
Consensus pattern (81 bp):
CAGACAAGGAAGAGAAAGAGAAGGCGCAGCAGCCCGAGAGTTTACCAGACAAGAAAGGGAAAGAT
GCGCCCAAGAGTTTAC
Found at i:11017276 original size:36 final size:36
Alignment explanation
Indices: 11017232--11017457 Score: 157
Period size: 36 Copynumber: 5.8 Consensus size: 36
11017222 CCGCAGCCCG
11017232 AGAGTTTACCAGACAAGGAAGGGAAAGATGCACCCA
1 AGAGTTTACCAGACAAGGAAGGGAAAGATGCACCCA
* * *
11017268 AGAATTTACCAAACAAGGAAGAGAAAGAGAAGGCGCA-GCAGCCCG
1 AGAGTTTACCAGACAAGGAAG-G---GA-AA---G-ATGCA-CCCA
* *
11017313 AGAGTTTACCAGACAAAGAAGGGAAAGATACACCCA
1 AGAGTTTACCAGACAAGGAAGGGAAAGATGCACCCA
* *
11017349 AGAGTTTACCAGACAAGGAAGAGAAAAAGAAGGTGCAGCAGCCCG
1 AGAGTTTACCAGACAAGGAAG-G-GAAAG-A--T---GCA-CCCA
* * * *
11017394 AGAGTTTACTAGACAAGGAAAGGAAAGATGCGCCTA
1 AGAGTTTACCAGACAAGGAAGGGAAAGATGCACCCA
* *
11017430 AGAGTTTATCAGACAAGGAAGAGAAAGA
1 AGAGTTTACCAGACAAGGAAGGGAAAGA
11017458 GGAGGCGCAA
Statistics
Matches: 148, Mismatches: 22, Indels: 40
0.70 0.10 0.19
Matches are distributed among these distances:
36 69 0.47
37 7 0.05
38 4 0.03
39 1 0.01
40 5 0.03
41 5 0.03
42 1 0.01
43 4 0.03
44 8 0.05
45 44 0.30
ACGTcount: A:0.44, C:0.17, G:0.28, T:0.11
Consensus pattern (36 bp):
AGAGTTTACCAGACAAGGAAGGGAAAGATGCACCCA
Found at i:11017538 original size:36 final size:36
Alignment explanation
Indices: 11017470--11017694 Score: 117
Period size: 36 Copynumber: 5.8 Consensus size: 36
11017460 AGGCGCAACA
* * ** *
11017470 GCCCGAGAGTTTACAAGACAAAAAAGATAAAGATGT
1 GCCCAAGAGTTTACCAGACAAGGAAGAAAAAGATGT
* * *
11017506 GCCCAAGAGTTTACTAGACAAGGAAGAAAAAGAGGAG
1 GCCCAAGAGTTTACCAGACAAGGAAGAAAAAGATG-T
* *
11017543 GCACAACAGCCAGAGAGTTTACCAAACAAGGAAGAGAAAGATGT
1 G-----C--CCA-AGAGTTTACCAGACAAGGAAGAAAAAGATGT
* * * *
11017587 GCCCAAGAGTTTACCAGACAAGGAAGTGAATGAGGAGGC
1 GCCCAAGAGTTTACCAGACAAGGAA--GAA-AAAGATGT
* * * **
11017626 GCATCAGCTTGAGAGTTTACCAGATAAGGAAGAGAAAGATAA
1 GC--C--C--AAGAGTTTACCAGACAAGGAAGAAAAAGATGT
11017668 GCCCAAGAGTTTACCAGACAAGGAAGA
1 GCCCAAGAGTTTACCAGACAAGGAAGA
11017695 GAACGAGGAG
Statistics
Matches: 143, Mismatches: 28, Indels: 36
0.69 0.14 0.17
Matches are distributed among these distances:
36 69 0.48
37 4 0.03
38 3 0.02
39 7 0.05
40 1 0.01
41 1 0.01
42 6 0.04
43 3 0.02
44 4 0.03
45 45 0.31
ACGTcount: A:0.43, C:0.16, G:0.27, T:0.14
Consensus pattern (36 bp):
GCCCAAGAGTTTACCAGACAAGGAAGAAAAAGATGT
Found at i:11020271 original size:13 final size:13
Alignment explanation
Indices: 11020253--11020289 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
11020243 AGGATTAAGT
11020253 GCCACACGGCCTA
1 GCCACACGGCCTA
**
11020266 GCCACAATGCCTA
1 GCCACACGGCCTA
11020279 GCCACACGGCC
1 GCCACACGGCC
11020290 GTGTGGCTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.24, C:0.46, G:0.22, T:0.08
Consensus pattern (13 bp):
GCCACACGGCCTA
Found at i:11021430 original size:39 final size:39
Alignment explanation
Indices: 11021386--11021465 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
11021376 TCTCTGTAAG
11021386 TATGTTTCGCTATCAAACTGATTTCTATAATTCTATTAT
1 TATGTTTCGCTATCAAACTGATTTCTATAATTCTATTAT
11021425 TATGTTTCGCTATCAAACTGATTTCTATAATTCTATTAT
1 TATGTTTCGCTATCAAACTGATTTCTATAATTCTATTAT
11021464 TA
1 TA
11021466 GTCACGTGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.07, T:0.49
Consensus pattern (39 bp):
TATGTTTCGCTATCAAACTGATTTCTATAATTCTATTAT
Found at i:11025980 original size:15 final size:15
Alignment explanation
Indices: 11025956--11025990 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
11025946 ACAATTTCAC
11025956 AAAA-TGATTTCGTG
1 AAAATTGATTTCGTG
11025970 AAAATTGATTTCGTG
1 AAAATTGATTTCGTG
11025985 AAAATT
1 AAAATT
11025991 TACAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.37
Consensus pattern (15 bp):
AAAATTGATTTCGTG
Found at i:11026800 original size:29 final size:30
Alignment explanation
Indices: 11026741--11026798 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
11026731 TCCGAGCCTT
*
11026741 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
11026771 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
11026799 AGAGTCAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:11027028 original size:13 final size:13
Alignment explanation
Indices: 11027010--11027041 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
11027000 TTTCCAGCAA
11027010 TTATGAATTTATT
1 TTATGAATTTATT
11027023 TTATGAATTTATT
1 TTATGAATTTATT
*
11027036 TGATGA
1 TTATGA
11027042 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:11040117 original size:29 final size:29
Alignment explanation
Indices: 11040075--11040141 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
11040065 ACACGAGCAT
* *
11040075 AGGCCGTGTGAGCCACATAGTCGTGTGAC
1 AGGCCGTGTGAGCCACACAGTCATGTGAC
*
11040104 AGGCCGTGTGAGCCACACGGTCATGTGAC
1 AGGCCGTGTGAGCCACACAGTCATGTGAC
11040133 AGGCCGTGT
1 AGGCCGTGT
11040142 AAGTGACCGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.19, C:0.25, G:0.36, T:0.19
Consensus pattern (29 bp):
AGGCCGTGTGAGCCACACAGTCATGTGAC
Found at i:11043534 original size:16 final size:16
Alignment explanation
Indices: 11043515--11043546 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
11043505 TCCTTACAAT
11043515 TTCATTTTCTTGTTGA
1 TTCATTTTCTTGTTGA
11043531 TTCATTTTCTTGTTGA
1 TTCATTTTCTTGTTGA
11043547 AATCTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.62
Consensus pattern (16 bp):
TTCATTTTCTTGTTGA
Found at i:11047986 original size:41 final size:40
Alignment explanation
Indices: 11047941--11048043 Score: 154
Period size: 41 Copynumber: 2.5 Consensus size: 40
11047931 TTTCCGAATC
*
11047941 AATGAAAAAGTTGAAAAGGATGTTATCCGAAAAGGATATCA
1 AATGAAAAAGTTGAAAAGGATATTATCCGAAAAGGATAT-A
*
11047982 AATGAGAAAGTTGAAAAGGATATTATCCGAAAAGGATATA
1 AATGAAAAAGTTGAAAAGGATATTATCCGAAAAGGATATA
*
11048022 AATG-AAAAGATCGAAAAGGATA
1 AATGAAAAAG-TTGAAAAGGATA
11048044 GCAATGAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
39 4 0.07
40 16 0.28
41 37 0.65
ACGTcount: A:0.51, C:0.06, G:0.22, T:0.20
Consensus pattern (40 bp):
AATGAAAAAGTTGAAAAGGATATTATCCGAAAAGGATATA
Found at i:11048036 original size:24 final size:24
Alignment explanation
Indices: 11048009--11048054 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
11047999 GGATATTATC
*
11048009 CGAAAAGGATATAAATGAAAAGAT
1 CGAAAAGGATAGAAATGAAAAGAT
*
11048033 CGAAAAGGATAGCAATGAAAAG
1 CGAAAAGGATAGAAATGAAAAG
11048055 GTTGATAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.24, T:0.13
Consensus pattern (24 bp):
CGAAAAGGATAGAAATGAAAAGAT
Found at i:11054906 original size:45 final size:45
Alignment explanation
Indices: 11054763--11054923 Score: 272
Period size: 46 Copynumber: 3.6 Consensus size: 45
11054753 TTTGAGTACT
11054763 TCTGATCAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
11054808 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATC-AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
11054854 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATC-AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
11054899 TCTGATCAGGGAC-AAGTGATAAGTG
1 TCTGATCAGTGACAAAGTGATAAGTG
11054924 ATTATACATA
Statistics
Matches: 113, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
43 12 0.11
44 5 0.04
45 26 0.23
46 70 0.62
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (45 bp):
TCTGATCAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:11055578 original size:73 final size:73
Alignment explanation
Indices: 11055501--11055646 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
11055491 TTGGATACGG
11055501 GTAAGGGGTGTTACAGTAACTCTAATTTTATTGGAGTGTTCCATTGGGCCACCAAGGCTTCAAAT
1 GTAAGGGGTGTTACAGTAACTCTAATTTTATTGGAGTGTTCCATTGGGCCACCAAGGCTTCAAAT
11055566 AGATGAAC
66 AGATGAAC
11055574 GTAAGGGGTGTTACAGTAACTCTAATTTTATTGGAGTGTTCCATTGGGCCACCAAGGCTTCAAAT
1 GTAAGGGGTGTTACAGTAACTCTAATTTTATTGGAGTGTTCCATTGGGCCACCAAGGCTTCAAAT
11055639 AGATGAAC
66 AGATGAAC
11055647 TTCTCAATAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (73 bp):
GTAAGGGGTGTTACAGTAACTCTAATTTTATTGGAGTGTTCCATTGGGCCACCAAGGCTTCAAAT
AGATGAAC
Done.