Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 32 of 210
Found at i:11368373 original size:27 final size:27
Alignment explanation
Indices: 11368335--11368401 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
11368325 ATAATACGAG
11368335 TGGTGCCGCCAATGGCATTGGCACCAT
1 TGGTGCCGCCAATGGCATTGGCACCAT
** *
11368362 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGGCATTGGCACCAT
11368389 TGGTGCCGCCAAT
1 TGGTGCCGCCAAT
11368402 ACTATTGGCG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.15, C:0.28, G:0.30, T:0.27
Consensus pattern (27 bp):
TGGTGCCGCCAATGGCATTGGCACCAT
Found at i:11368409 original size:27 final size:27
Alignment explanation
Indices: 11368335--11368410 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
11368325 ATAATACGAG
11368335 TGGTGCCGCCAATGGC-ATTGGCACCAT
1 TGGTGCCGCCAAT-GCTATTGGCACCAT
* * *
11368362 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGCTATTGGCACCAT
*
11368389 TGGTGCCGCCAATACTATTGGC
1 TGGTGCCGCCAATGCTATTGGC
11368411 GTGACCAGTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.02
27 41 0.98
ACGTcount: A:0.16, C:0.28, G:0.29, T:0.28
Consensus pattern (27 bp):
TGGTGCCGCCAATGCTATTGGCACCAT
Found at i:11368511 original size:28 final size:28
Alignment explanation
Indices: 11368471--11368546 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
11368461 TTTTGGTTTT
*
11368471 TTTATATATTTTGGTAAATAAAAAAAAG
1 TTTATATATTTTGGTAAATAAAAAAAAA
*
11368499 TTTATATATTTTGATAAATAAAAAAAAA
1 TTTATATATTTTGGTAAATAAAAAAAAA
* *
11368527 CTTGTAGTATTTTGGTAAAT
1 TTTATA-TATTTTGGTAAAT
11368547 TTTTATTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 30 0.71
29 12 0.29
ACGTcount: A:0.46, C:0.01, G:0.11, T:0.42
Consensus pattern (28 bp):
TTTATATATTTTGGTAAATAAAAAAAAA
Found at i:11374350 original size:40 final size:38
Alignment explanation
Indices: 11374306--11374383 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 38
11374296 TTGTCATATG
**
11374306 ACATTAATTTAAAATACGATTATTGTAGCTTAAAAAACTT
1 ACATTAATGCAAAATA--ATTATTGTAGCTTAAAAAACTT
* *
11374346 ACATTAATGCGACATAATTATTGTAGCTTAAAAAACTT
1 ACATTAATGCAAAATAATTATTGTAGCTTAAAAAACTT
11374384 GACCTACAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 22 0.65
40 12 0.35
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.36
Consensus pattern (38 bp):
ACATTAATGCAAAATAATTATTGTAGCTTAAAAAACTT
Found at i:11377564 original size:22 final size:21
Alignment explanation
Indices: 11377539--11377586 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
11377529 TTTTCACAAA
11377539 CAAATCCTATCTAATTTCCTTC
1 CAAATCCTATC-AATTTCCTTC
* *
11377561 CAAAATTCTCTCAATTTCCTTC
1 C-AAATCCTATCAATTTCCTTC
11377583 CAAA
1 CAAA
11377587 ATTCTCTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.13
22 12 0.52
23 8 0.35
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (21 bp):
CAAATCCTATCAATTTCCTTC
Found at i:11377587 original size:22 final size:22
Alignment explanation
Indices: 11377551--11377596 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
11377541 AATCCTATCT
11377551 AATTTCCTTCCAAAATTCTCTC
1 AATTTCCTTCCAAAATTCTCTC
11377573 AATTTCCTTCCAAAATTCTCTC
1 AATTTCCTTCCAAAATTCTCTC
11377595 AA
1 AA
11377597 ACTCTCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTTCCTTCCAAAATTCTCTC
Found at i:11377604 original size:30 final size:30
Alignment explanation
Indices: 11377568--11377626 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
11377558 TTCCAAAATT
* *
11377568 CTCTCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
11377598 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
11377627 TTTCCTTCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.34
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:11377645 original size:22 final size:22
Alignment explanation
Indices: 11377598--11377639 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
11377588 TTCTCTCAAA
11377598 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
*
11377620 CTCTCAATTTCCTTCCAAAA
1 CTCTCAAATTCCTTCCAAAA
11377640 ATCTCTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:11377679 original size:17 final size:18
Alignment explanation
Indices: 11377654--11377687 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11377644 CTAAAATCCA
11377654 TATTAAATTTC-TTTTTC
1 TATTAAATTTCATTTTTC
*
11377671 TATTCAATTTCATTTTT
1 TATTAAATTTCATTTTT
11377688 TAAGATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTAAATTTCATTTTTC
Found at i:11377717 original size:31 final size:30
Alignment explanation
Indices: 11377682--11377747 Score: 105
Period size: 31 Copynumber: 2.2 Consensus size: 30
11377672 ATTCAATTTC
* *
11377682 ATTTTTTAAGATAATTTTAAATATTTTTTAT
1 ATTTTTTAAAATAATTTTAAAT-TTTTTAAT
11377713 ATTTTTTAAAATAATTTTAAATTTTTTAAT
1 ATTTTTTAAAATAATTTTAAATTTTTTAAT
11377743 ATTTT
1 ATTTT
11377748 CAACAATGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 12 0.36
31 21 0.64
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (30 bp):
ATTTTTTAAAATAATTTTAAATTTTTTAAT
Found at i:11377719 original size:20 final size:20
Alignment explanation
Indices: 11377682--11377747 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
11377672 ATTCAATTTC
*
11377682 ATTTTTTAAGATAATTTTAAAT
1 ATTTTTTAA-AT-TTTTTAAAT
*
11377704 ATTTTTTATATTTTTTAAA-
1 ATTTTTTAAATTTTTTAAAT
*
11377723 ATAATTTTAAATTTTTT-AAT
1 AT-TTTTTAAATTTTTTAAAT
11377743 ATTTT
1 ATTTT
11377748 CAACAATGGC
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
19 6 0.16
20 21 0.57
21 2 0.05
22 8 0.22
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTTTTTAAATTTTTTAAAT
Found at i:11380518 original size:33 final size:30
Alignment explanation
Indices: 11380438--11380530 Score: 134
Period size: 29 Copynumber: 3.0 Consensus size: 30
11380428 TTATTTGATA
*
11380438 CCCTAACCTAATTTATTTAAAAACCCTAA-
1 CCCTAACCTAATTTAATTAAAAACCCTAAC
11380467 CCCTAACCTAATTTAATTAAAAACCCTAAC
1 CCCTAACCTAATTTAATTAAAAACCCTAAC
*
11380497 CCCTAATCGTAAAATTTAATTAAAAACCCTAAC
1 CCCTAA-CCT--AATTTAATTAAAAACCCTAAC
11380530 C
1 C
11380531 TAATTTNNNN
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
29 28 0.48
30 6 0.10
31 2 0.03
33 22 0.38
ACGTcount: A:0.43, C:0.28, G:0.01, T:0.28
Consensus pattern (30 bp):
CCCTAACCTAATTTAATTAAAAACCCTAAC
Found at i:11384487 original size:123 final size:124
Alignment explanation
Indices: 11384259--11384573 Score: 569
Period size: 123 Copynumber: 2.5 Consensus size: 124
11384249 CCACGAGGGC
* **
11384259 GCAATTTTATACTATTTGCTCAGAAATTTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
1 GCAATTTAATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
*
11384324 AAATCGCGTCCACGAGGGCTCGATTTCACAATTTCTTCTCAAATATCATCCTGGTAGAA
66 AAATCGCGTCCACGAAGGCTCGATTTCACAATTTCTTCTCAAATATCATCCTGGTAGAA
* *
11384383 GCGATTTAATACTATTTGCTCAGAAACGTCAAAAAAAA-TATTTCTTACATGATCAACTGTAGCG
1 GCAATTTAATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
11384447 AAATCGCGTCCACGAAGGCTCGATTTCACAATTTCTTCTCAAATATCATCCTGGTAGAA
66 AAATCGCGTCCACGAAGGCTCGATTTCACAATTTCTTCTCAAATATCATCCTGGTAGAA
11384506 GCAATTTAATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
1 GCAATTTAATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
11384571 AAA
66 AAA
11384574 CCCTAAAAAG
Statistics
Matches: 182, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
123 120 0.66
124 62 0.34
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (124 bp):
GCAATTTAATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
AAATCGCGTCCACGAAGGCTCGATTTCACAATTTCTTCTCAAATATCATCCTGGTAGAA
Found at i:11389692 original size:6 final size:7
Alignment explanation
Indices: 11389677--11389701 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11389667 TCAAGTTGGA
11389677 TTTTATT
1 TTTTATT
11389684 TTTTATT
1 TTTTATT
11389691 TTTTATT
1 TTTTATT
11389698 TTTT
1 TTTT
11389702 CTTAATCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:11394853 original size:45 final size:44
Alignment explanation
Indices: 11394703--11394874 Score: 137
Period size: 45 Copynumber: 4.0 Consensus size: 44
11394693 TATATTAAGC
* * *
11394703 ATGCCAACGTCCCAGACGTGGTCTTACATGCT-ATCTC-ATATCG
1 ATGCCATCGTCCCAGACGTGGTCTTACACG-TAATCACAATATCG
* * *
11394746 ATGCCA-CTGTCCCGGAC-AGGTCTTACATG-AATCA-AATA-CG
1 ATGCCATC-GTCCCAGACGTGGTCTTACACGTAATCACAATATCG
*** *
11394786 ATGCCAAT-GTCATTGACATGGTCTTACACGTAATCACATATATCG
1 ATGCC-ATCGTCCCAGACGTGGTCTTACACGTAATCACA-ATATCG
* *
11394831 ATGCCATCGTCCCAGACGTGGTCTTACACGAAAACAC-ATATCG
1 ATGCCATCGTCCCAGACGTGGTCTTACACGTAATCACAATATCG
11394874 A
1 A
11394875 AAATCGTATG
Statistics
Matches: 104, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
40 13 0.12
41 17 0.16
42 17 0.16
43 22 0.21
44 5 0.05
45 30 0.29
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (44 bp):
ATGCCATCGTCCCAGACGTGGTCTTACACGTAATCACAATATCG
Found at i:11397099 original size:64 final size:64
Alignment explanation
Indices: 11396991--11397119 Score: 204
Period size: 64 Copynumber: 2.0 Consensus size: 64
11396981 CGAGTATCTC
**
11396991 GATCGGTAGTGATCCTGCATGTGTTGCGGACATACCGCAACTCTTTGTGAGCGTCCTGTTATAT
1 GATCGGTAGTGATCCTGCATGTGTTGAAGACATACCGCAACTCTTTGTGAGCGTCCTGTTATAT
* * * *
11397055 GATCGGTAGTGGTCTTGCATGTGTTGAAGACATACTGCAGCTCTTTGTGAGCGTCCTGTTATAT
1 GATCGGTAGTGATCCTGCATGTGTTGAAGACATACCGCAACTCTTTGTGAGCGTCCTGTTATAT
11397119 G
1 G
11397120 GCTCTCCGGC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (64 bp):
GATCGGTAGTGATCCTGCATGTGTTGAAGACATACCGCAACTCTTTGTGAGCGTCCTGTTATAT
Found at i:11400161 original size:10 final size:10
Alignment explanation
Indices: 11400148--11400291 Score: 76
Period size: 10 Copynumber: 13.6 Consensus size: 10
11400138 GAGAAGAAAT
11400148 AAAGAAAGAA
1 AAAGAAAGAA
11400158 AAAGAAAGAA
1 AAAGAAAGAA
*
11400168 AAGGAAAGGAGA
1 AAAGAAA-GA-A
*
11400180 GGGAAGAAAGAA
1 --AAAGAAAGAA
*
11400192 AAAGAAGGAA
1 AAAGAAAGAA
*
11400202 AGAA-AAGGAA
1 A-AAGAAAGAA
** *
11400212 ATGGGAAGAAA
1 AAAGAAAG-AA
11400223 AAAGAAAGAAAA
1 AAAGAAAG--AA
11400235 AGAAGGAAAGAA
1 A-AA-GAAAGAA
*
11400247 AAGGAAAGAA
1 AAAGAAAGAA
* *
11400257 AAGGAAAGGA
1 AAAGAAAGAA
*
11400267 GAAGAAA-AA
1 AAAGAAAGAA
11400276 AAAGAAAGAA
1 AAAGAAAGAA
*
11400286 GAAGAA
1 AAAGAA
11400292 GAGGCAAGGA
Statistics
Matches: 104, Mismatches: 19, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
9 7 0.07
10 62 0.60
11 12 0.12
12 9 0.09
13 4 0.04
14 10 0.10
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:11400192 original size:34 final size:35
Alignment explanation
Indices: 11400149--11400257 Score: 118
Period size: 34 Copynumber: 3.2 Consensus size: 35
11400139 AGAAGAAATA
*
11400149 AAGAAAGAAAAAGAAAGAAAAGGAAAGGAGA-GGG
1 AAGAAAGAAAAAGAAAGAAAAGGAAAGGAAATGGG
* *
11400183 AAGAAAGAAAAAG-AAGGAAAGAAAAGGAAATGGG
1 AAGAAAGAAAAAGAAAGAAAAGGAAAGGAAATGGG
* * *
11400217 AAGAAAAAAGAAAGAAA-AAGAAGGAAA-GAAAAGGA
1 AAGAAAGAA-AAAGAAAGAA-AAGGAAAGGAAATGGG
11400252 AAGAAA
1 AAGAAA
11400258 AGGAAAGGAG
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
33 14 0.22
34 24 0.38
35 17 0.27
36 8 0.13
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (35 bp):
AAGAAAGAAAAAGAAAGAAAAGGAAAGGAAATGGG
Found at i:11400237 original size:41 final size:40
Alignment explanation
Indices: 11400132--11400254 Score: 150
Period size: 41 Copynumber: 3.1 Consensus size: 40
11400122 AGAAGGAGAG
11400132 GGAAAGGAGAAGAAATAAAGAAAG--AAA-AA-GAAAGAAAA
1 GGAAAGG-GAAGAAA-AAAGAAAGAAAAAGAAGGAAAGAAAA
***
11400170 GGAAA-GG-AGAGGGAAGAAAGAAAAAGAAGGAAAGAAAA
1 GGAAAGGGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAA
11400208 GGAAATGGGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAA
1 GGAAA-GGGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAA
11400249 GGAAAG
1 GGAAAG
11400255 AAAAGGAAAG
Statistics
Matches: 72, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
34 7 0.10
35 3 0.04
36 4 0.06
37 3 0.04
38 19 0.26
40 3 0.04
41 33 0.46
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02
Consensus pattern (40 bp):
GGAAAGGGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAA
Found at i:11400255 original size:51 final size:52
Alignment explanation
Indices: 11400183--11400292 Score: 154
Period size: 51 Copynumber: 2.1 Consensus size: 52
11400173 AAGGAGAGGG
*
11400183 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAATGG-GAAG-AAAAAAGAAAGAAA
1 AAGAAGGAAAAAGAAGGAAAGAAAAGGAAA-GGAGAAGAAAAAAAGAAAGAAA
*
11400234 AAGAAGGAAAGAA-AAGGAAAGAAAAGGAAAGGAGAAGAAAAAAAAGAAAGAAG
1 AAGAAGGAAA-AAGAAGGAAAGAAAAGGAAAGGAGAAG-AAAAAAAGAAAGAAA
11400287 AAGAAG
1 AAGAAG
11400293 AGGCAAGGAA
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
50 2 0.04
51 30 0.57
52 2 0.04
53 19 0.36
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (52 bp):
AAGAAGGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAAAAAAAGAAAGAAA
Found at i:11400305 original size:79 final size:79
Alignment explanation
Indices: 11400139--11400317 Score: 188
Period size: 79 Copynumber: 2.3 Consensus size: 79
11400129 GAGGGAAAGG
* * * * * *
11400139 AGAAGAAATAAAGAAAGAAAAAGAAAGAAAAGGAAAGGAGAGGGAAGAAAGAAAAAGAAGGAAAG
1 AGAAAAAAGAAAGAAAGAAAAAGAAAGAAAAGGAAAGAAAAGGAAAGAAAGAAAAAGAAAGAAAG
*
11400204 AAAAGGAAATGGGA
66 AAAAGGAAATGGCA
*
11400218 AGAAAAAAGAAAGAAA-AAGAAGGAAAGAAAAGGAAAGAAAAGGAAAGGAGAAGAAAAA-AAAGA
1 AGAAAAAAGAAAGAAAGAA-AAAGAAAGAAAAGGAAAGAAAAGGAAA-GA-AAGAAAAAGAAAGA
11400281 AAGAAGAA-GAAGA-GGCA
63 AAGAA-AAGGAA-ATGGCA
* *
11400298 AG-GAAAAGAAAGAAGGAAAA
1 AGAAAAAAGAAAGAAAGAAAA
11400318 GTAATTTTTG
Statistics
Matches: 84, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
78 2 0.02
79 50 0.60
80 21 0.25
81 11 0.13
ACGTcount: A:0.68, C:0.01, G:0.30, T:0.01
Consensus pattern (79 bp):
AGAAAAAAGAAAGAAAGAAAAAGAAAGAAAAGGAAAGAAAAGGAAAGAAAGAAAAAGAAAGAAAG
AAAAGGAAATGGCA
Found at i:11400313 original size:13 final size:13
Alignment explanation
Indices: 11400233--11400318 Score: 53
Period size: 13 Copynumber: 7.0 Consensus size: 13
11400223 AAAGAAAGAA
11400233 AAAGAAGG-AAAG
1 AAAGAAGGAAAAG
11400245 -AA-AAGG-AAAG
1 AAAGAAGGAAAAG
*
11400255 -AA-AAGGAAAGG
1 AAAGAAGGAAAAG
**
11400266 AGAAGAAAAAAAAG
1 A-AAGAAGGAAAAG
11400280 AAAGAA-GAAGAAG
1 AAAGAAGGAA-AAG
*
11400293 -AGGCAAGGAAAAG
1 AAAG-AAGGAAAAG
11400306 AAAGAAGGAAAAG
1 AAAGAAGGAAAAG
11400319 TAATTTTTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
10 14 0.24
11 5 0.08
12 4 0.07
13 24 0.41
14 12 0.20
ACGTcount: A:0.67, C:0.01, G:0.31, T:0.00
Consensus pattern (13 bp):
AAAGAAGGAAAAG
Found at i:11401153 original size:157 final size:158
Alignment explanation
Indices: 11400671--11401223 Score: 553
Period size: 157 Copynumber: 3.5 Consensus size: 158
11400661 AAATTAATAA
* * * * *
11400671 ATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAAAAAT--TATGGTATTT-TT-
1 ATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATTAAAAATAATAT-ATTTTTATTG
* * **
11400732 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAATTT
65 AAAGTAATAAAATGCGGAG-AAAAAATACGAACAAAGGGCCGAAGTAAGAGTCTTTTACTAA-AA
* *
11400797 TTTTTTAAAATTTAGAAATAATTAATACAAAT
128 TTTTTAAAAATTCAGAAATAA-TAATACAAAT
11400829 ATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAA-TACGAAAATAATATATTTTTATT
1 ATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATTA--AAAATAATATATTTTTATT
** * * * *
11400893 GAAAGTAATAAAAT-TTGAGAAAATAATACGAGCAAAGGGCAGGAA-TAATGATTTTTTTTAC-A
64 GAAAGTAATAAAATGCGGAGAAAA-AATACGAACAAAGGGC-CGAAGTAA-GA-GTCTTTTACTA
* * * *
11400955 CTAAATTAATTTAAAAA-ACA-TACTAA-ATTA-ATAA-
125 --AAATT--TTTAAAAATTCAGAAATAATAATACA-AAT
** * * * *
11400989 ATTTCAAACATCATGCACTGAAATAATGTAAAATTATAAAATTAAAAATTATGATA-TTTT-TT-
1 ATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATTAAAAATAAT-ATATTTTTATTG
11401051 AAAGTAATAAAATGCGGAGAAAAAATACGAACAAAGGGCCGAAGTAAGAGTCTTTTACTAAAATT
65 AAAGTAATAAAATGCGGAGAAAAAATACGAACAAAGGGCCGAAGTAAGAGTCTTTTACTAAAATT
11401116 TTTAAAAATTCAGAAATAATGAATACAAAT
130 TTTAAAAATTCAGAAATAAT-AATACAAAT
* * **
11401146 ATTTCAAAAAAAAAGTACTGAAATAATATAAAATAATAAAATGCGAAAATAATATATTTTTATTG
1 ATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAAT-TAAAAATAATATATTTTTATTG
11401211 AAAGTAATAAAAT
65 AAAGTAATAAAAT
11401224 TAAATAGAAA
Statistics
Matches: 319, Mismatches: 46, Indels: 58
0.75 0.11 0.14
Matches are distributed among these distances:
152 8 0.03
153 2 0.01
154 9 0.03
155 7 0.02
156 11 0.03
157 72 0.23
158 58 0.18
159 18 0.06
160 61 0.19
161 32 0.10
162 19 0.06
163 13 0.04
164 2 0.01
165 7 0.02
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (158 bp):
ATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATTAAAAATAATATATTTTTATTGA
AAGTAATAAAATGCGGAGAAAAAATACGAACAAAGGGCCGAAGTAAGAGTCTTTTACTAAAATTT
TTAAAAATTCAGAAATAATAATACAAAT
Found at i:11401390 original size:10 final size:10
Alignment explanation
Indices: 11401375--11401519 Score: 72
Period size: 10 Copynumber: 14.3 Consensus size: 10
11401365 GAAGGAGAGG
11401375 GAAAGAAGAA
1 GAAAGAAGAA
11401385 GAAAGAAAGAA
1 GAAAG-AAGAA
* *
11401396 -AAGGAAAGGA
1 GAAAG-AAGAA
**
11401406 GAGGGAAGAAA
1 GAAAGAAG-AA
11401417 GAAA-AAGAA
1 GAAAGAAGAA
11401426 GGAAAGAA-AA
1 -GAAAGAAGAA
*
11401436 GGAAATG-GGAA
1 -GAAA-GAAGAA
*
11401447 GAAAAAAGAAA
1 GAAAGAAG-AA
11401458 GAAA-AAGAA
1 GAAAGAAGAA
11401467 GGAAAGAA-AA
1 -GAAAGAAGAA
11401477 GGAAAGAA-AA
1 -GAAAGAAGAA
*
11401487 GGAAAGGAGAA
1 -GAAAGAAGAA
*
11401498 GAAA-AAAAA
1 GAAAGAAGAA
11401507 GAAAGAAGAA
1 GAAAGAAGAA
11401517 GAA
1 GAA
11401520 GAGGCAAGGA
Statistics
Matches: 109, Mismatches: 13, Indels: 26
0.74 0.09 0.18
Matches are distributed among these distances:
9 11 0.10
10 72 0.66
11 26 0.24
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.01
Consensus pattern (10 bp):
GAAAGAAGAA
Found at i:11401401 original size:24 final size:24
Alignment explanation
Indices: 11401374--11401516 Score: 96
Period size: 24 Copynumber: 5.6 Consensus size: 24
11401364 AGAAGGAGAG
11401374 GGAAAGAAGAAGAAAGAAAGAAAA
1 GGAAAGAAGAAGAAAGAAAGAAAA
11401398 GGAAAGGAGAGGGAAGAAAGAAA-AAGAA
1 GGAAA-GA-A--GAAGAAAGAAAGAA-AA
*
11401426 GGAAAGAA-AAGGAAATGGGAAGAAAAA
1 GGAAAGAAGAA-GAAA--GAAAG-AAAA
* * *
11401453 AGAAAGAAAAAGAAGGAAAGAAAA
1 GGAAAGAAGAAGAAAGAAAGAAAA
11401477 GGAAAGAA-AAGGAAAGGAGAAGAAAA
1 GGAAAGAAGAA-GAAA-GA-AAGAAAA
*
11401503 -AAAAGAAAGAAGAA
1 GGAAAG-AAGAAGAA
11401517 GAAGAGGCAA
Statistics
Matches: 96, Mismatches: 7, Indels: 30
0.72 0.05 0.23
Matches are distributed among these distances:
23 4 0.04
24 23 0.24
25 12 0.12
26 17 0.18
27 18 0.19
28 22 0.23
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.01
Consensus pattern (24 bp):
GGAAAGAAGAAGAAAGAAAGAAAA
Found at i:11401403 original size:5 final size:5
Alignment explanation
Indices: 11401385--11401494 Score: 57
Period size: 5 Copynumber: 22.4 Consensus size: 5
11401375 GAAAGAAGAA
* * * * *
11401385 GAAA- GAAAG AAAAG GAAAG GAGAG GGAA- GAAAG AAAAA G-AAG GAAAG
1 GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG
* * * * * * *
11401432 AAAAG GAAATG GGAAG AAAAAA GAAAG AAAAA G-AAG GAAAG AAAAG GAAAG
1 GAAAG GAAA-G GAAAG -GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG
*
11401483 AAAAG GAAAG GA
1 GAAAG GAAAG GA
11401495 GAAGAAAAAA
Statistics
Matches: 74, Mismatches: 26, Indels: 11
0.67 0.23 0.10
Matches are distributed among these distances:
4 13 0.18
5 55 0.74
6 6 0.08
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.01
Consensus pattern (5 bp):
GAAAG
Found at i:11401413 original size:28 final size:28
Alignment explanation
Indices: 11401382--11401539 Score: 96
Period size: 25 Copynumber: 5.5 Consensus size: 28
11401372 AGGGAAAGAA
*
11401382 GAAGAAAGAAAGAAAAGGAAAGGAGAGG
1 GAAGAAAGAAAGAAAAGAAAAGGAGAGG
*
11401410 GAAGAAAGAAAAAGAAGGAAAGAAAAGGAAATGG
1 GAAGAAAG--AAAG-A--AAAGAAAAGGAGA-GG
*
11401444 GAAGAAA-AAAG-AAAGAAAAAGA-AGG
1 GAAGAAAGAAAGAAAAGAAAAGGAGAGG
* * *
11401469 AAAGAAAAGGAAAGAAAAGGAAAGGAGA-A
1 GAAG-AAA-GAAAGAAAAGAAAAGGAGAGG
*
11401498 GAA-AAA-AAAG-AAAGAAGAAGAAGAGG
1 GAAGAAAGAAAGAAAAGAA-AAGGAGAGG
*
11401524 CAAGGAAAAGAAAGAA
1 GAA-G-AAAGAAAGAA
11401540 GGAAAAGTAA
Statistics
Matches: 100, Mismatches: 12, Indels: 33
0.69 0.08 0.23
Matches are distributed among these distances:
24 5 0.05
25 15 0.15
26 6 0.06
27 13 0.13
28 12 0.12
29 14 0.14
30 9 0.09
31 6 0.06
33 11 0.11
34 9 0.09
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.01
Consensus pattern (28 bp):
GAAGAAAGAAAGAAAAGAAAAGGAGAGG
Found at i:11401456 original size:41 final size:38
Alignment explanation
Indices: 11401375--11401482 Score: 144
Period size: 41 Copynumber: 2.8 Consensus size: 38
11401365 GAAGGAGAGG
* * ***
11401375 GAAAGAAGAAGAAAGAAAGAAAAGGAAAGGAGAGGGAA
1 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAAAAA
11401413 GAAAGAAAAAGAAGGAAAGAAAAGGAAATGGGAAGAAAAAA
1 GAAAGAAAAAGAAGGAAAGAAAAGGAAA--GG-AGAAAAAA
11401454 GAAAGAAAAAGAAGGAAAGAAAAGGAAAG
1 GAAAGAAAAAGAAGGAAAGAAAAGGAAAG
11401483 AAAAGGAAAG
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
38 26 0.42
39 1 0.02
40 2 0.03
41 33 0.53
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (38 bp):
GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAAAAA
Found at i:11401483 original size:51 final size:52
Alignment explanation
Indices: 11401411--11401520 Score: 154
Period size: 51 Copynumber: 2.1 Consensus size: 52
11401401 AAGGAGAGGG
*
11401411 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAATGG-GAAG-AAAAAAGAAAGAAA
1 AAGAAGGAAAAAGAAGGAAAGAAAAGGAAA-GGAGAAGAAAAAAAGAAAGAAA
*
11401462 AAGAAGGAAAGAA-AAGGAAAGAAAAGGAAAGGAGAAGAAAAAAAAGAAAGAAG
1 AAGAAGGAAA-AAGAAGGAAAGAAAAGGAAAGGAGAAG-AAAAAAAGAAAGAAA
11401515 AAGAAG
1 AAGAAG
11401521 AGGCAAGGAA
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
50 2 0.04
51 30 0.57
52 2 0.04
53 19 0.36
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (52 bp):
AAGAAGGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAAAAAAAGAAAGAAA
Found at i:11401504 original size:41 final size:40
Alignment explanation
Indices: 11401383--11401535 Score: 140
Period size: 41 Copynumber: 3.9 Consensus size: 40
11401373 GGGAAAGAAG
* * *
11401383 AAGAAAGAAAGAAAAGGAAAGGAGAGGGAAGA-AAG-AAA
1 AAGAAGGAAAGAAAAGGAAAGGAAAGGAAAGAGAAGAAAA
* * *
11401421 AAGAAGGAAAGAAAAGGAAATGGGAAGAAAAAAGAA-AGAAA
1 AAGAAGGAAAGAAAAGGAAA-GGAAAGGAAAGAGAAGA-AAA
*
11401462 AAGAAGGAAAGAAAAGGAAAGAAAAGGAAAGGAGAAGAAAA
1 AAGAAGGAAAGAAAAGGAAAGGAAAGGAAA-GAGAAGAAAA
*
11401503 AA-AA-GAAAGAAGAA-GAAGAGGCAAGGAAA-AGAA
1 AAGAAGGAAAGAA-AAGGAA-AGGAAAGGAAAGAGAA
11401536 AGAAGGAAAA
Statistics
Matches: 95, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
38 23 0.24
39 17 0.18
40 22 0.23
41 32 0.34
42 1 0.01
ACGTcount: A:0.67, C:0.01, G:0.31, T:0.01
Consensus pattern (40 bp):
AAGAAGGAAAGAAAAGGAAAGGAAAGGAAAGAGAAGAAAA
Found at i:11401533 original size:79 final size:79
Alignment explanation
Indices: 11401375--11401539 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
11401365 GAAGGAGAGG
* * * * *
11401375 GAAAGAAGAAGAAAGAAAGAAAAGGAAAGGAGAGGGAAGAAAGAAAAAGAAGGAAAGAAAAGGAA
1 GAAAGAAAAAGAAAGAAAGAAAAGGAAAGAAAAGGAAAGAAAGAAAAAGAAAGAAAGAAAAGGAA
*
11401440 ATGGGAAGAAAAAA
66 ATGGCAAGAAAAAA
*
11401454 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGAAAAGGAAAGGAGAAGAAAAA-AAAGAAAGAAGAA-
1 GAAAGAAAAAGAAAGAAAGAAAAGGAAAGAAAAGGAAA-GA-AAGAAAAAGAAAGAAAGAA-AAG
*
11401517 GAAGA-GGCAAG-GAAAA
63 GAA-ATGGCAAGAAAAAA
11401533 GAAAGAA
1 GAAAGAA
11401540 GGAAAAGTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
79 44 0.59
80 19 0.26
81 11 0.15
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.01
Consensus pattern (79 bp):
GAAAGAAAAAGAAAGAAAGAAAAGGAAAGAAAAGGAAAGAAAGAAAAAGAAAGAAAGAAAAGGAA
ATGGCAAGAAAAAA
Found at i:11401541 original size:13 final size:13
Alignment explanation
Indices: 11401461--11401546 Score: 53
Period size: 13 Copynumber: 7.0 Consensus size: 13
11401451 AAAGAAAGAA
11401461 AAAGAAGG-AAAG
1 AAAGAAGGAAAAG
11401473 -AA-AAGG-AAAG
1 AAAGAAGGAAAAG
*
11401483 -AA-AAGGAAAGG
1 AAAGAAGGAAAAG
**
11401494 AGAAGAAAAAAAAG
1 A-AAGAAGGAAAAG
11401508 AAAGAA-GAAGAAG
1 AAAGAAGGAA-AAG
*
11401521 -AGGCAAGGAAAAG
1 AAAG-AAGGAAAAG
11401534 AAAGAAGGAAAAG
1 AAAGAAGGAAAAG
11401547 TAATTTTTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
10 14 0.24
11 5 0.08
12 4 0.07
13 24 0.41
14 12 0.20
ACGTcount: A:0.67, C:0.01, G:0.31, T:0.00
Consensus pattern (13 bp):
AAAGAAGGAAAAG
Found at i:11402147 original size:18 final size:17
Alignment explanation
Indices: 11402086--11402148 Score: 56
Period size: 19 Copynumber: 3.5 Consensus size: 17
11402076 GAAATAATAT
*
11402086 AAAATAATAAAATAC-G
1 AAAATAATAAAATTCAG
* *
11402102 AAAATAATATAATTTCATT
1 AAAATAATA-AAATTCA-G
11402121 AAAAGTAATAAAATTCGAG
1 AAAA-TAATAAAATTC-AG
11402140 AAAATAATA
1 AAAATAATA
11402149 CGAGCAAAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
16 9 0.24
17 4 0.11
18 5 0.14
19 13 0.35
20 6 0.16
ACGTcount: A:0.62, C:0.05, G:0.06, T:0.27
Consensus pattern (17 bp):
AAAATAATAAAATTCAG
Found at i:11407537 original size:42 final size:40
Alignment explanation
Indices: 11407409--11407543 Score: 121
Period size: 40 Copynumber: 3.2 Consensus size: 40
11407399 CCACTAACCC
* *
11407409 TAATAACTAACACAATAACAATAATAATAGTTTTATACTCAAAA
1 TAAT-ACTAAC-C-ATAAAAATAATAATAGTTTTTTACT-AAAA
* **
11407453 TAATACTAA-C-TAAAAATGATAATTAGGGTTTTACTAAAAA
1 TAATACTAACCATAAAAATAATAA-TAGTTTTTTACT-AAAA
* *
11407493 TAATAACTAACCATAATAATAATACTAGTTTTTTACTAACAA
1 TAAT-ACTAACCATAAAAATAATAATAGTTTTTTACTAA-AA
11407535 TAATACTAA
1 TAATACTAA
11407544 GTAACATCTA
Statistics
Matches: 75, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
39 10 0.13
40 17 0.23
41 13 0.17
42 17 0.23
43 14 0.19
44 4 0.05
ACGTcount: A:0.51, C:0.12, G:0.04, T:0.33
Consensus pattern (40 bp):
TAATACTAACCATAAAAATAATAATAGTTTTTTACTAAAA
Found at i:11407734 original size:10 final size:10
Alignment explanation
Indices: 11407706--11407742 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
11407696 AAATACCTTT
11407706 TTTTTCTCTTC
1 TTTTTCTC-TC
*
11407717 TCTTTCTCTC
1 TTTTTCTCTC
11407727 TTTTTCTCTC
1 TTTTTCTCTC
11407737 TTTTTC
1 TTTTTC
11407743 CAGCAGCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 17 0.71
11 7 0.29
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTCTCTC
Found at i:11417352 original size:45 final size:44
Alignment explanation
Indices: 11417235--11417840 Score: 325
Period size: 44 Copynumber: 13.6 Consensus size: 44
11417225 AACAGATCAT
** * *
11417235 TGAAGATAGCAAATCTTGCCTTCCTACACTGACAGCAAAGCAGA-
1 TGAAGATAGC-AATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* * ** * * *
11417279 TCGAAGACACCAGCCTTGCCTTCCTGTACTAACAGTGGAGTAGAC
1 T-GAAGATAGCAATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* * *
11417324 TGAAGATAGCATATCTTGCCTTCATGTACTGACAACGAAGCAGA-
1 TGAAGATAGCA-ATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* * * *
11417368 TCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGAAGCAGAC
1 T-GAAGATAGCAATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* *
11417413 TGAAGATAGCAGATTTTGCCTTCCTGTACTAACAGCGAAGCA-AA
1 TGAAGATAGCA-ATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* ** * * * * *
11417457 TCGAAGACA-CTAGCCTTCCCTTCCTATAATGACAGTGGAA-CAGAC
1 T-GAAGATAGC-AATCTTGCCTTCCTGTACTAACAG-CGAAGCAGAC
* * * * *
11417502 TGAAGATAACAGATCTTGCCTTCCCGTACTGACAGTGAAGTAGA-
1 TGAAGATAGCA-ATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* * ** * * * *
11417546 TCGAAGACACCAGCCTTCCCTTCCTATACTAACAGC-AGAGAAGAT
1 T-GAAGATAGCAATCTTGCCTTCCTGTACTAACAGCGA-AGCAGAC
* * * * *
11417591 TGAAGATAACAAATCTTACATTCCTGCACTGACAGCGAAGCAGA-
1 TGAAGATAGC-AATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* * * ** * *
11417635 TCAAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGAAACAGA-
1 T-GAAGATAGCAATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* ** * * * *
11417679 TCGAAGACA-CTAGCCTTACCTTCCTGTACTGACAACGGAGCAGAC
1 T-GAAGATAGC-AATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* * * * *
11417724 TGAAGATAGAAAATCTTGCCTTCCTGTACTGATAGCGAAACA-AA
1 TGAAGATAG-CAATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
* * ** * *
11417768 TCGAAGACACCAGCCTTGCCTTCCTGTATTGACAGCGAAGCAGAC
1 T-GAAGATAGCAATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
*
11417813 AGAAGATAGCAGATCTTGCCTTCCTGTA
1 TGAAGATAGCA-ATCTTGCCTTCCTGTA
11417841 TTGACAATGA
Statistics
Matches: 427, Mismatches: 109, Indels: 51
0.73 0.19 0.09
Matches are distributed among these distances:
43 2 0.00
44 239 0.56
45 185 0.43
46 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (44 bp):
TGAAGATAGCAATCTTGCCTTCCTGTACTAACAGCGAAGCAGAC
Found at i:11417386 original size:89 final size:89
Alignment explanation
Indices: 11417235--11417846 Score: 552
Period size: 89 Copynumber: 6.9 Consensus size: 89
11417225 AACAGATCAT
** *
11417235 TGAAGATAGCAAATCTTGCCTTCCTACACTGACAGCAAAGCAGATCGAAGACACCAGCCTTGCCT
1 TGAAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * *
11417300 TCCTGTACTAACAGTGGAGTAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * *
11417324 TGAAGATAGCATATCTTGCCTTCATGTACTGACAACGAAGCAGATCGAAGACACCAACCTTGCCT
1 TGAAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
11417389 TCCTGTACTGACAGCGAAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * *
11417413 TGAAGATAGCAGATTTTGCCTTCCTGTACTAACAGCGAAGCAAATCGAAGACACTAGCCTTCCCT
1 TGAAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * *
11417478 TCCTATAATGACAGTGGAACAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * *
11417502 TGAAGATAACAGATCTTGCCTTCCCGTACTGACAGTGAAGTAGATCGAAGACACCAGCCTTCCCT
1 TGAAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * * *
11417567 TCCTATACTAACAGCAGAGAAGAT
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * *
11417591 TGAAGATAACAAATCTTACATTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCT
1 TGAAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
11417656 TCCTGTACTGACAGCGAAACAGA-
66 TCCTGTACTGACAGCGGAGCAGAC
* * ** * * * * ** **
11417679 TCGAAGACA-CTAGCCTTACCTTCCTGTACTGACAACGGAGCAGA-CTGAAGATAGAAAATCTTG
1 T-GAAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-GAAGACA-CCAGCCTTG
* * * *
11417742 CCTTCCTGTACTGATAGCGAAACA-AA
63 CCTTCCTGTACTGACAGCGGAGCAGAC
* * ** * * * *
11417768 TCGAAGACA-CCAGCCTTGCCTTCCTGTATTGACAGCGAAGCAGA-CAGAAGATAGCAGATCTTG
1 T-GAAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-GAAGACACCAG-CCTTG
*
11417831 CCTTCCTGTATTGACA
63 CCTTCCTGTACTGACA
11417847 ATGAAGCAGA
Statistics
Matches: 437, Mismatches: 81, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
87 1 0.00
88 36 0.08
89 400 0.92
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (89 bp):
TGAAGATAGCAAATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
TCCTGTACTGACAGCGGAGCAGAC
Found at i:11417684 original size:222 final size:223
Alignment explanation
Indices: 11417388--11417868 Score: 583
Period size: 222 Copynumber: 2.2 Consensus size: 223
11417378 CAACCTTGCC
* * **
11417388 TTCCTGTACTGACAGCGAAGCAGA-CTGAAGATAGCAGATTTTGCCTTCCTGTACTAACAGCGAA
1 TTCCTGTACTGACAGCGAAGCAGATC-GAAGACACCAGACCTTGCCTTCCTGTACTAACAGCGAA
* * ** *
11417452 GCAAATCGAAGACACTAGCCTTCCCTTCCTATAATGACAGTGGAACAGACTGAAGATA-ACAGAT
65 ACAAATCGAAGACACTAGCCTTACCTTCCTATAATGACAACGGAACAGACTGAAGATAGA-AAAT
* ** *
11417516 CTTGCCTTCCCGTACTGACAGTGAAGTAGATCGAAGACACCAGCCTTCCCTTCCTATACTAACAG
129 CTTGCCTTCCCGTACTGACAGCGAAACAAATCGAAGACACCAGCCTTCCCTTCCTATACTAACAG
**
11417581 C-AGAGAAGATTGAAGATAACAAATCTTACA
194 CGA-AGAAGACAGAAGATAACAAATCTTACA
* * *
11417611 TTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAG-CCTTGCCTTCCTGTACTGACAGCGAAA
1 TTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGACCTTGCCTTCCTGTACTAACAGCGAAA
* * * *
11417675 CAGATCGAAGACACTAGCCTTACCTTCCTGTACTGACAACGGAGCAGACTGAAGATAGAAAATCT
66 CAAATCGAAGACACTAGCCTTACCTTCCTATAATGACAACGGAACAGACTGAAGATAGAAAATCT
* * * * * *
11417740 TGCCTTCCTGTACTGATAGCGAAACAAATCGAAGACACCAGCCTTGCCTTCCTGTATTGACAGCG
131 TGCCTTCCCGTACTGACAGCGAAACAAATCGAAGACACCAGCCTTCCCTTCCTATACTAACAGCG
* * * * *
11417805 AAGCAGACAGAAGATAGCAGATCTTGCC
196 AAGAAGACAGAAGATAACAAATCTTACA
* **
11417833 TTCCTGTATTGACAATGAAGCAGATCGAAGACACCA
1 TTCCTGTACTGACAGCGAAGCAGATCGAAGACACCA
11417869 TAGTTTGCAG
Statistics
Matches: 217, Mismatches: 38, Indels: 7
0.83 0.15 0.03
Matches are distributed among these distances:
222 183 0.84
223 33 0.15
224 1 0.00
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.22
Consensus pattern (223 bp):
TTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGACCTTGCCTTCCTGTACTAACAGCGAAA
CAAATCGAAGACACTAGCCTTACCTTCCTATAATGACAACGGAACAGACTGAAGATAGAAAATCT
TGCCTTCCCGTACTGACAGCGAAACAAATCGAAGACACCAGCCTTCCCTTCCTATACTAACAGCG
AAGAAGACAGAAGATAACAAATCTTACA
Found at i:11417748 original size:267 final size:267
Alignment explanation
Indices: 11417235--11417720 Score: 627
Period size: 267 Copynumber: 1.8 Consensus size: 267
11417225 AACAGATCAT
* * *
11417235 TGAAGATAGCAAATCTTGCCTTCCTACACTGACAGCAAAGCAGATCGAAGACACCAGCCTTGCCT
1 TGAAGATAACAAATCTTGCCTTCCCACACTGACAGCAAAGCAGATCGAAGACACCAGCCTTCCCT
* ** * * * * * *
11417300 TCCTGTACTAACAGTGGAGTAGACTGAAGATAGCATATCTTGCCTTCATGTACTGACAACGAAGC
66 TCCTATACTAACAGCAGAGAAGACTGAAGATAACAAATCTTACATTCATGCACTGACAACGAAGC
* * * **
11417365 AGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGAAGCAGACTGAAGATAGCAGATTTT
131 AGATCAAAGACACCAACCTTGCCTTCCTGTACTGACAGCGAAACAGACTGAAGACAGCAGACCTT
* * ** *
11417430 GCCTTCCTGTACTAACAGCGAAGCAAATCGAAGACACTAGCCTTCCCTTCCTATAATGACAGTGG
196 ACCTTCCTGTACTAACAACGAAGCAAATCGAAGACAAAAACCTTCCCTTCCTATAATGACAGTGG
11417495 AACAGAC
261 AACAGAC
* ** ** *
11417502 TGAAGATAACAGATCTTGCCTTCCCGTACTGACAGTGAAGTAGATCGAAGACACCAGCCTTCCCT
1 TGAAGATAACAAATCTTGCCTTCCCACACTGACAGCAAAGCAGATCGAAGACACCAGCCTTCCCT
* * *
11417567 TCCTATACTAACAGCAGAGAAGATTGAAGATAACAAATCTTACATTCCTGCACTGACAGCGAAGC
66 TCCTATACTAACAGCAGAGAAGACTGAAGATAACAAATCTTACATTCATGCACTGACAACGAAGC
*
11417632 AGATCAAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGAAACAGA-TCGAAGACA-CTAG-CC
131 AGATCAAAGACACCAACCTTGCCTTCCTGTACTGACAGCGAAACAGACT-GAAGACAGC-AGACC
* *
11417694 TTACCTTCCTGTACTGACAACGGAGCA
194 TTACCTTCCTGTACTAACAACGAAGCA
11417721 GACTGAAGAT
Statistics
Matches: 186, Mismatches: 31, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
266 25 0.13
267 161 0.87
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (267 bp):
TGAAGATAACAAATCTTGCCTTCCCACACTGACAGCAAAGCAGATCGAAGACACCAGCCTTCCCT
TCCTATACTAACAGCAGAGAAGACTGAAGATAACAAATCTTACATTCATGCACTGACAACGAAGC
AGATCAAAGACACCAACCTTGCCTTCCTGTACTGACAGCGAAACAGACTGAAGACAGCAGACCTT
ACCTTCCTGTACTAACAACGAAGCAAATCGAAGACAAAAACCTTCCCTTCCTATAATGACAGTGG
AACAGAC
Found at i:11417884 original size:31 final size:31
Alignment explanation
Indices: 11417849--11417919 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
11417839 TATTGACAAT
*
11417849 GAAGCAGATCGAAGACACCATAGTTTGCAGC
1 GAAGCAGATCAAAGACACCATAGTTTGCAGC
11417880 GAAGCAGATCAAAGACACCATAGTTTGCAGC
1 GAAGCAGATCAAAGACACCATAGTTTGCAGC
*
11417911 AAAGCAGAT
1 GAAGCAGAT
11417920 TAAAAATAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.15
Consensus pattern (31 bp):
GAAGCAGATCAAAGACACCATAGTTTGCAGC
Found at i:11419653 original size:29 final size:29
Alignment explanation
Indices: 11419576--11419654 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
11419566 AAATTTTCGT
** *
11419576 TATATATATACATACATGTGTTTTTATAA
1 TATATATATACATACACATATTTTTATAA
* *
11419605 TATATATATACATGCGCATATTTTTATAA
1 TATATATATACATACACATATTTTTATAA
* * *
11419634 TTTATCTATATATACACATAT
1 TATATATATACATACACATAT
11419655 ATACCTATAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (29 bp):
TATATATATACATACACATATTTTTATAA
Found at i:11419978 original size:8 final size:8
Alignment explanation
Indices: 11419961--11419996 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
11419951 TATATATATA
11419961 TATATCTTT
1 TATAT-TTT
11419970 TATATTTT
1 TATATTTT
11419978 TATATTTT
1 TATATTTT
*
11419986 TATAATTT
1 TATATTTT
11419994 TAT
1 TAT
11419997 TCATTTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
8 21 0.81
9 5 0.19
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (8 bp):
TATATTTT
Found at i:11421847 original size:109 final size:108
Alignment explanation
Indices: 11421658--11421972 Score: 490
Period size: 109 Copynumber: 2.9 Consensus size: 108
11421648 AAGATTTAAG
* * * *
11421658 AGGATATTTGGCTATTTGGTCCAACAAG-AAATCGAAACCCAGCACATTAGGGTACATTTTCTCG
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
* *
11421722 AATTTCCAAATGCAAAACATTGCCTTATTTTGAAA-TTTCTAAA
66 AATTTCCAAACGCAAAACATTGCCTTATTTTGAAAGTTT-GAAA
*
11421765 AGGATATTTGGCTATTTGGTCGAACGAGTAAAATCGAAACCCAGCACATTAGAGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAG-AAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
11421830 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAGTTTGAAA
65 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAGTTTGAAA
* *
11421874 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCAAAACCCAGCGCATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAG-AAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* *
11421939 GAATTTCCAACCGCAAAACATTGCCTTACTTTGA
65 GAATTTCCAAACGCAAAACATTGCCTTATTTTGA
11421973 TTTTTTTTTA
Statistics
Matches: 192, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
107 26 0.14
109 163 0.85
110 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (108 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
AATTTCCAAACGCAAAACATTGCCTTATTTTGAAAGTTTGAAA
Found at i:11422246 original size:6 final size:6
Alignment explanation
Indices: 11422197--11422268 Score: 71
Period size: 6 Copynumber: 12.5 Consensus size: 6
11422187 CAATAATGAG
* * * *
11422197 AATAAA TAA-AAA AATAAA AGTAAA AGTAAA AGTAAA AGTAAA AATAAA
1 AATAAA -AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
11422245 AAT--- AATAAA AATAAA AATAAA AAT
1 AATAAA AATAAA AATAAA AATAAA AAT
11422269 CTATGTATAT
Statistics
Matches: 59, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
3 3 0.05
5 2 0.03
6 52 0.88
7 2 0.03
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:11422255 original size:15 final size:15
Alignment explanation
Indices: 11422235--11422264 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11422225 AAAGTAAAAG
11422235 TAAAAATAAAAATAA
1 TAAAAATAAAAATAA
11422250 TAAAAATAAAAATAA
1 TAAAAATAAAAATAA
11422265 AAATCTATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAAAATAAAAATAA
Found at i:11424003 original size:99 final size:98
Alignment explanation
Indices: 11423829--11424328 Score: 653
Period size: 99 Copynumber: 5.0 Consensus size: 98
11423819 CACCAGGGAA
** * * * *
11423829 AGGGAAGTAAGATTCGTTGTTGTAGCTTTAATCTATTTAATTGCAATGTCGGGGAAGCAAGATTT
1 AGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCT-TTTAATTACAATGTCGGGGAAGCAAGA-TT
* * *
11423894 G-TCGTTGTAGCTCCAATTTGTTCCACTGCACCGCC
64 GCT-ATTGTAGCTTCAATCTGTTCCACTGCACCGCC
* **
11423929 AAGGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAATTACAATGTCGGGGAAGCAAGACTTG
1 AGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATGTCGGGGAAGCAAGA-TTG
* *
11423994 CTATTGTAGCTTCAATCTGTTCCACTGCACCTCT
65 CTATTGTAGCTTCAATCTGTTCCACTGCACCGCC
*
11424028 AGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAACTACAATGTCGGGGAAGCAAGA-TGC
1 AGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATGTCGGGGAAGCAAGATTGC
* *
11424092 GTCATTGTAGCTTCAATGTGTTCCACTGCACCACC
66 -T-ATTGTAGCTTCAATCTGTTCCACTGCACCGCC
* * * * *
11424127 AGGGAAATAAGATTCGCCGTTGTGGCCTTAATCTTTTAACTGCAACGTCGGGGAAGCAAGATTCG
1 AGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATGTCGGGGAAGCAAGATT-G
* * *
11424192 CCATTGTAGCTTCAATCTGTTCCACAGCACTGCC
65 CTATTGTAGCTTCAATCTGTTCCACTGCACCGCC
* * *
11424226 AGGGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAATTATAATGTCGGGGAAGCAAGATTCA
1 AGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATGTCGGGGAAGCAAGATT-G
*
11424291 CCATTGTAGCTTCAATCTGTTCCACTGCACCGCC
65 CTATTGTAGCTTCAATCTGTTCCACTGCACCGCC
11424325 AGGG
1 AGGG
11424329 GCATGGGAAA
Statistics
Matches: 354, Mismatches: 41, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
97 3 0.01
98 1 0.00
99 320 0.90
100 28 0.08
101 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (98 bp):
AGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATGTCGGGGAAGCAAGATTGC
TATTGTAGCTTCAATCTGTTCCACTGCACCGCC
Found at i:11424059 original size:50 final size:50
Alignment explanation
Indices: 11423880--11424259 Score: 211
Period size: 50 Copynumber: 7.7 Consensus size: 50
11423870 TGCAATGTCG
* * * * * *
11423880 GGGAAGCAAGATTTGTCGTTGTAG-CTCCAATTTGTTCCACTGCACCGCCA
1 GGGAAGTAAGATTCGCCGTTGTGGCCT-CAATCTGTTCCACTGCACCTCCA
* ** ** * * * * *
11423930 AGGAAGTAAGATTTACCGTTGTGGCCTCAATCT-TTTAATTACA-ATGTCG
1 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTGTTCCACTGCACCT-CCA
* ** * * *
11423979 GGGAAGCAAGACTT-GCTATTGTAGCTTCAATCTGTTCCACTGCACCTCTA
1 GGGAAGTAAGA-TTCGCCGTTGTGGCCTCAATCTGTTCCACTGCACCTCCA
** * * * *
11424029 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCT-TTTAACTACA-ATGTCG
1 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTGTTCCACTGCACCT-CCA
* * * * * * * *
11424078 GGGAAGCAAGATGCGTCATTGTAGCTTCAATGTGTTCCACTGCACCACCA
1 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTGTTCCACTGCACCTCCA
* * ** * *
11424128 GGGAAATAAGATTCGCCGTTGTGGCCTTAATCT-TTTAACTGCAACGT-CG
1 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTGTTCCACTGC-ACCTCCA
* * * * *
11424177 GGGAAGCAAGATTCGCCATTGTAGCTTCAATCTGTTCCACAGCA-CTGCCA
1 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTGTTCCACTGCACCT-CCA
*
11424227 GGGAAGTAAGATTTGCCGTTGTGGCCTCAATCT
1 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCT
11424260 TTTAATTATA
Statistics
Matches: 232, Mismatches: 85, Indels: 26
0.68 0.25 0.08
Matches are distributed among these distances:
48 2 0.01
49 101 0.44
50 126 0.54
51 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTGTTCCACTGCACCTCCA
Found at i:11424089 original size:49 final size:49
Alignment explanation
Indices: 11423948--11424308 Score: 233
Period size: 49 Copynumber: 7.3 Consensus size: 49
11423938 AGATTTACCG
* * *
11423948 TTGTGGCCTCAATCTTTTAATTACAATGTCGGGGAAGCAAGACTT-GCTA
1 TTGTAGCCTCAATCTTTTAACTACAATGTCGGGGAAGCAAGA-TTCGCCA
* ** * ** * * *
11423997 TTGTAGCTTCAATCTGTTCCACTGC-ACCTCTAGGGAAGTAAGATTCGCCG
1 TTGTAGCCTCAATCT-TTTAACTACAATGTC-GGGGAAGCAAGATTCGCCA
* * *
11424047 TTGTGGCCTCAATCTTTTAACTACAATGTCGGGGAAGCAAGATGCGTCA
1 TTGTAGCCTCAATCTTTTAACTACAATGTCGGGGAAGCAAGATTCGCCA
* * ** * **** * ** *
11424096 TTGTAGCTTCAATGTGTTCCACTGCACCACCAGGGAAATAAGATTCGCCG
1 TTGTAGCCTCAATCT-TTTAACTACAATGTCGGGGAAGCAAGATTCGCCA
* * * *
11424146 TTGTGGCCTTAATCTTTTAACTGCAACGTCGGGGAAGCAAGATTCGCCA
1 TTGTAGCCTCAATCTTTTAACTACAATGTCGGGGAAGCAAGATTCGCCA
* ** * * * * * *
11424195 TTGTAGCTTCAATCTGTTCCAC-AGCACTGCCAGGGAAGTAAGATTTGCCG
1 TTGTAGCCTCAATCT-TTTAACTA-CAATGTCGGGGAAGCAAGATTCGCCA
* * * *
11424245 TTGTGGCCTCAATCTTTTAATTATAATGTCGGGGAAGCAAGATTCACCA
1 TTGTAGCCTCAATCTTTTAACTACAATGTCGGGGAAGCAAGATTCGCCA
*
11424294 TTGTAGCTTCAATCT
1 TTGTAGCCTCAATCT
11424309 GTTCCACTGC
Statistics
Matches: 223, Mismatches: 81, Indels: 16
0.70 0.25 0.05
Matches are distributed among these distances:
49 121 0.54
50 102 0.46
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (49 bp):
TTGTAGCCTCAATCTTTTAACTACAATGTCGGGGAAGCAAGATTCGCCA
Found at i:11428659 original size:12 final size:12
Alignment explanation
Indices: 11428642--11428666 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11428632 TCCTGGTATG
11428642 CATGTTTTGCTT
1 CATGTTTTGCTT
11428654 CATGTTTTGCTT
1 CATGTTTTGCTT
11428666 C
1 C
11428667 TTTAGCTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.20, G:0.16, T:0.56
Consensus pattern (12 bp):
CATGTTTTGCTT
Found at i:11429252 original size:106 final size:106
Alignment explanation
Indices: 11429067--11429272 Score: 412
Period size: 106 Copynumber: 1.9 Consensus size: 106
11429057 GCTCAAAAAA
11429067 ATTGCGAAGATATATTTCATTGAAATCACAATGTTCAAACATATGCCCATTTCACAAAAAGTTTT
1 ATTGCGAAGATATATTTCATTGAAATCACAATGTTCAAACATATGCCCATTTCACAAAAAGTTTT
11429132 CACTGTCTCTAGGCTTAAAACAATTAGTATGTTTTTTCAAT
66 CACTGTCTCTAGGCTTAAAACAATTAGTATGTTTTTTCAAT
11429173 ATTGCGAAGATATATTTCATTGAAATCACAATGTTCAAACATATGCCCATTTCACAAAAAGTTTT
1 ATTGCGAAGATATATTTCATTGAAATCACAATGTTCAAACATATGCCCATTTCACAAAAAGTTTT
11429238 CACTGTCTCTAGGCTTAAAACAATTAGTATGTTTT
66 CACTGTCTCTAGGCTTAAAACAATTAGTATGTTTT
11429273 GAAAATCACT
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 100 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (106 bp):
ATTGCGAAGATATATTTCATTGAAATCACAATGTTCAAACATATGCCCATTTCACAAAAAGTTTT
CACTGTCTCTAGGCTTAAAACAATTAGTATGTTTTTTCAAT
Found at i:11446531 original size:109 final size:108
Alignment explanation
Indices: 11446342--11446589 Score: 372
Period size: 109 Copynumber: 2.3 Consensus size: 108
11446332 AAGATTTAAG
* * **
11446342 AGGATATTTGGCTATTTGGTCCAACGAG-AAATCAAAACCCAACACATTAGGGTTCATTTTCTCG
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAACACATTAGGGCACATTTTCTCG
* *
11446406 AATTTCCAAACGCAAAACATTGTCTTATTTTGAAATTTCTAAA
66 AATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTCTAAA
* * *
11446449 AGGATATTTGGCTATTTGGTCGAACGAGTAAAATCGAAAGCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAG-AAAATCGAAACCCAACACATTAGGGCACATTTTCTC
*
11446514 GAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTAAA
65 GAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTCTAAA
* *
11446558 AGGTTATTTGGCTATTTGGTCGAACAAGAAAA
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAA
11446590 ATGGAAATAA
Statistics
Matches: 127, Mismatches: 12, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
107 27 0.21
108 4 0.03
109 96 0.76
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (108 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAACACATTAGGGCACATTTTCTCG
AATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTCTAAA
Found at i:11446817 original size:6 final size:6
Alignment explanation
Indices: 11446770--11446807 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
11446760 CAATAATGAG
*
11446770 AATAAA TAA-AAA AATAAA AGTAAA AATAAA AATAAA AA
1 AATAAA -AATAAA AATAAA AATAAA AATAAA AATAAA AA
11446808 AAATAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
5 2 0.07
6 24 0.86
7 2 0.07
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:11450654 original size:362 final size:363
Alignment explanation
Indices: 11449990--11450716 Score: 1285
Period size: 362 Copynumber: 2.0 Consensus size: 363
11449980 AAAATAAAAT
* * *
11449990 AAAAAAAGGACTAAATTGGAAAGTAAAATAATAAATGATGATAAAGGATAAAATACTGAAAATAT
1 AAAAAAAGGACTAAATTGGAAAGTAAAATAATAAAAGATGATAAAGGACAAAATACTAAAAATAT
* *
11450055 AATCATTTATATCATCTTTCCCAAGTTAAAAGCATGGAAACCCTAGCCATGGAAACCTAAGCTCA
66 AATCATTTATATCAACTTTCCCAAGATAAAAGCATGGAAACCCTAGCCATGGAAACCTAAGCTCA
*
11450120 AGCCAACTTATTTTGCTTGATTAGGTAAGTATTTTTTCCCCGTTTTTAATGATTTTTACATTTTC
131 AGCCAACTTATTTTGCTTGATTAGGTAAGTATTTTTTCCCCGTTTTTAATGATTTTTACATTTCC
*
11450185 GAGATCGTAATAACCTAATCTAGCTATCTCGGAGATTAATTTGCAAAGTTATCAAGGTAATAGGG
196 GAGATCGTAATAACCTAATCTAGCTATCTCAGAGATTAATTTGCAAAGTTATCAAGGTAATAGGG
11450250 TTTTACCATGGATGAACATAGATGAATTATAAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATA
261 TTTTACCATGGATGAACATAGATGAATTATAAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATA
*
11450315 GATAAACAACTTTTGTAAAGTGATTTTTTATGAAATTA
326 GATAAACAACTTTTGTAAAGTGAATTTTTATGAAATTA
* *
11450353 AAAAAAAGGACTAAATTGGAAAGTAAAATAATAAAAGATTATAAATGACAAAATACTAAAAATAT
1 AAAAAAAGGACTAAATTGGAAAGTAAAATAATAAAAGATGATAAAGGACAAAATACTAAAAATAT
* * *
11450418 AATCATTTATATCAACTTTTCCAA-ATAAAAGCATGGAAGCCCTAGCCATGGAAGCCTAAGCTCA
66 AATCATTTATATCAACTTTCCCAAGATAAAAGCATGGAAACCCTAGCCATGGAAACCTAAGCTCA
*
11450482 AGCCAACTTATTTTGCTTTATTAGGTAAGTATTTTTTCCCCGTTTTTAATGATTTTTACATTTCC
131 AGCCAACTTATTTTGCTTGATTAGGTAAGTATTTTTTCCCCGTTTTTAATGATTTTTACATTTCC
* *
11450547 GATATCGTAATAACTTAATCTAGCTATCTCAGAGATTAATTTGCAAAGTTATCAAGGTAATAGGG
196 GAGATCGTAATAACCTAATCTAGCTATCTCAGAGATTAATTTGCAAAGTTATCAAGGTAATAGGG
* *
11450612 TTTTACCATGGATGAACATAGATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTTTTGATA
261 TTTTACCATGGATGAACATAGATGAATTATAAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATA
11450677 GATAAACAACTTTTGTAAAGTGAATTTTTATGAAATTA
326 GATAAACAACTTTTGTAAAGTGAATTTTTATGAAATTA
11450715 AA
1 AA
11450717 GATTTAGGGA
Statistics
Matches: 346, Mismatches: 18, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
362 264 0.76
363 82 0.24
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.34
Consensus pattern (363 bp):
AAAAAAAGGACTAAATTGGAAAGTAAAATAATAAAAGATGATAAAGGACAAAATACTAAAAATAT
AATCATTTATATCAACTTTCCCAAGATAAAAGCATGGAAACCCTAGCCATGGAAACCTAAGCTCA
AGCCAACTTATTTTGCTTGATTAGGTAAGTATTTTTTCCCCGTTTTTAATGATTTTTACATTTCC
GAGATCGTAATAACCTAATCTAGCTATCTCAGAGATTAATTTGCAAAGTTATCAAGGTAATAGGG
TTTTACCATGGATGAACATAGATGAATTATAAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATA
GATAAACAACTTTTGTAAAGTGAATTTTTATGAAATTA
Found at i:11451671 original size:25 final size:25
Alignment explanation
Indices: 11451620--11451671 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
11451610 GTCTGGATAT
* *
11451620 GCTTCCTGTTACATGGCTCATATGA
1 GCTTCCCGTTACATGGCTCAGATGA
*
11451645 GCTTCCCGTTATATGGCTCGAGA-GA
1 GCTTCCCGTTACATGGCTC-AGATGA
11451670 GC
1 GC
11451672 GCTTTCTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.31
Consensus pattern (25 bp):
GCTTCCCGTTACATGGCTCAGATGA
Found at i:11457508 original size:50 final size:50
Alignment explanation
Indices: 11457407--11457571 Score: 251
Period size: 50 Copynumber: 3.3 Consensus size: 50
11457397 GGGAATGAGA
* *
11457407 TCCCATGTAAGACCATGTCTGGGACAT-GCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTAGCACATGGCGTTGGCACCGAGATGAGAGG
11457456 TCCCATGTAAGACCATGTCTAGCACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTAGCACATGGCGTTGGCACCGAGATGAGAGG
* * * **
11457506 TCCCATGTAAGACCATGTCTAGCACATGGCGTGGGCACCGATATGATAAC
1 TCCCATGTAAGACCATGTCTAGCACATGGCGTTGGCACCGAGATGAGAGG
*
11457556 TCTCATGTAAGACCAT
1 TCCCATGTAAGACCAT
11457572 ATCCGGGATA
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
49 25 0.23
50 82 0.77
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTAGCACATGGCGTTGGCACCGAGATGAGAGG
Found at i:11460504 original size:29 final size:29
Alignment explanation
Indices: 11460471--11460530 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
11460461 TCTCAACATA
11460471 AAGGTTATCAATGTCTCACCTCAAATGGC
1 AAGGTTATCAATGTCTCACCTCAAATGGC
*
11460500 AAGGTTATCAATGTCTCACCTCAGATGGC
1 AAGGTTATCAATGTCTCACCTCAAATGGC
11460529 AA
1 AA
11460531 AGTCATTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (29 bp):
AAGGTTATCAATGTCTCACCTCAAATGGC
Found at i:11468550 original size:16 final size:16
Alignment explanation
Indices: 11468526--11468560 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
11468516 TTTGGTTCGC
* *
11468526 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
11468542 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
11468558 TGT
1 TGT
11468561 TATAGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:11468818 original size:18 final size:17
Alignment explanation
Indices: 11468797--11468831 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
11468787 TTATTATTAA
*
11468797 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
11468815 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
11468832 TCTTGTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:11468927 original size:120 final size:119
Alignment explanation
Indices: 11468714--11468954 Score: 464
Period size: 120 Copynumber: 2.0 Consensus size: 119
11468704 TAAATGATTA
11468714 TTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTT
1 TTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTT
11468779 AAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC
66 AAACATAATTATTATTAAATATATTTTAATTAAAATA-ATAATTTAATAAAATTC
*
11468834 TTGTTATTGTTATTTAAATTTTAATAATATTATTATTATCAATAATAAATAATTTAATCATATTT
1 TTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTT
11468899 AAACATAATTATTATTAAATATATTTTAATTAAAATAATAATTTAATAAAATTC
66 AAACATAATTATTATTAAATATATTTTAATTAAAATAATAATTTAATAAAATTC
11468953 TT
1 TT
11468955 AATAATTAAT
Statistics
Matches: 120, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
119 19 0.16
120 101 0.84
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (119 bp):
TTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTT
AAACATAATTATTATTAAATATATTTTAATTAAAATAATAATTTAATAAAATTC
Found at i:11468946 original size:27 final size:26
Alignment explanation
Indices: 11468881--11468946 Score: 60
Period size: 27 Copynumber: 2.5 Consensus size: 26
11468871 ATCAATAATA
*
11468881 AATAATTTAATCATATTTAAACATAAT
1 AATAATTTAAT-ATATTTAAACAAAAT
* * * **
11468908 TATTATTAAATATATTTTAATTAAAAT
1 AATAATTTAATATA-TTTAAACAAAAT
11468935 AATAATTTAATA
1 AATAATTTAATA
11468947 AAATTCTTAA
Statistics
Matches: 29, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (26 bp):
AATAATTTAATATATTTAAACAAAAT
Found at i:11478656 original size:2 final size:2
Alignment explanation
Indices: 11478649--11478683 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
11478639 NACAAGCATG
11478649 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11478684 AAGTATAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11486853 original size:14 final size:14
Alignment explanation
Indices: 11486832--11486890 Score: 57
Period size: 15 Copynumber: 4.1 Consensus size: 14
11486822 GTTATTGTAA
11486832 TTTT-ATTTTTAAT
1 TTTTAATTTTTAAT
11486845 TTTTAATTTTTAATT
1 TTTTAATTTTTAA-T
* * *
11486860 TTTTTATTTTCAAA
1 TTTTAATTTTTAAT
11486874 TTTTAACTTTTATAAT
1 TTTTAA-TTTT-TAAT
11486890 T
1 T
11486891 AAATATTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
13 4 0.11
14 13 0.36
15 16 0.44
16 3 0.08
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTAATTTTTAAT
Found at i:11486868 original size:22 final size:22
Alignment explanation
Indices: 11486830--11486890 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
11486820 TAGTTATTGT
*
11486830 AATTTT-A-TTTTTAATTTTTA
1 AATTTTAACTTTTTAATTTTCA
* * *
11486850 ATTTTTAATTTTTTTATTTTCA
1 AATTTTAACTTTTTAATTTTCA
11486872 AATTTTAACTTTTATAATT
1 AATTTTAACTTTT-TAATT
11486891 AAATATTTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
20 5 0.16
21 1 0.03
22 22 0.69
23 4 0.12
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (22 bp):
AATTTTAACTTTTTAATTTTCA
Found at i:11486869 original size:6 final size:7
Alignment explanation
Indices: 11486832--11486890 Score: 57
Period size: 7 Copynumber: 8.1 Consensus size: 7
11486822 GTTATTGTAA
11486832 TTTT-AT
1 TTTTAAT
11486838 TTTTAAT
1 TTTTAAT
11486845 TTTTAAT
1 TTTTAAT
11486852 TTTTAATT
1 TTTTAA-T
*
11486860 TTTTTAT
1 TTTTAAT
* *
11486867 TTTCAAA
1 TTTTAAT
11486874 TTTTAACT
1 TTTTAA-T
11486882 TTTATAAT
1 TTT-TAAT
11486890 T
1 T
11486891 AAATATTTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
6 4 0.09
7 25 0.58
8 11 0.26
9 3 0.07
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTTAAT
Found at i:11486877 original size:29 final size:31
Alignment explanation
Indices: 11486832--11486890 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
11486822 GTTATTGTAA
* *
11486832 TTTTATTTTTAATTTTTAA-TTTT-TAATTT
1 TTTTATTTTCAAATTTTAACTTTTATAATTT
11486861 TTTTATTTTCAAATTTTAACTTTTATAATT
1 TTTTATTTTCAAATTTTAACTTTTATAATT
11486891 AAATATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 17 0.65
30 4 0.15
31 5 0.19
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.69
Consensus pattern (31 bp):
TTTTATTTTCAAATTTTAACTTTTATAATTT
Found at i:11488625 original size:16 final size:16
Alignment explanation
Indices: 11488604--11488645 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
11488594 AATAATTTGA
*
11488604 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
11488620 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
11488636 TAGTTTTAAT
1 TAATTTTAAT
11488646 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:11488629 original size:22 final size:22
Alignment explanation
Indices: 11488619--11488679 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
11488609 TTACTAACAA
* * *
11488619 TTAATTTTAATAACAATTAGTT
1 TTAATTTTAATAAAAAATAATT
*
11488641 TTAATTTTATTAAAAAATAATT
1 TTAATTTTAATAAAAAATAATT
*
11488663 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
11488680 CGGGCCGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
TTAATTTTAATAAAAAATAATT
Found at i:11489860 original size:2 final size:2
Alignment explanation
Indices: 11489853--11489877 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11489843 TTATTTTTAA
11489853 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
11489878 ATTACTGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11490060 original size:2 final size:2
Alignment explanation
Indices: 11490053--11490077 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11490043 TTATTTTTAA
11490053 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
11490078 ATTACTGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11490081 original size:200 final size:200
Alignment explanation
Indices: 11489738--11490131 Score: 779
Period size: 200 Copynumber: 2.0 Consensus size: 200
11489728 ACTTTGTATA
11489738 TCTAAAGCCTCTTTATAATTTACAATCACATCTTCTTCAGGTGGGATATTAAAGTTGGATATATT
1 TCTAAAGCCTCTTTATAATTTACAATCACATCTTCTTCAGGTGGGATATTAAAGTTGGATATATT
11489803 TAAATTATTTAATTACACAAAGCTTTCTATATTTAAAATTTTATTTTTAAATATATATATATATA
66 TAAATTATTTAATTACACAAAGCTTTCTATATTTAAAATTTTATTTTTAAATATATATATATATA
11489868 TATATATATAATTACTGACAAGTGATTTAAGGGGGAAGTAAACTTTCTTTTACATACATTTAAAA
131 TATATATATAATTACTGACAAGTGATTTAAGGGGGAAGTAAACTTTCTTTTACATACATTTAAAA
11489933 ACTCT
196 ACTCT
11489938 TCTAAAGCCTCTTTATAATTTACAATCACATCTTCTTCAGGTGGGATATTAAAGTTGGATATATT
1 TCTAAAGCCTCTTTATAATTTACAATCACATCTTCTTCAGGTGGGATATTAAAGTTGGATATATT
11490003 TAAATTATTTAATTACACAAAGCTTTCTATATTTAAAATTTTATTTTTAAATATATATATATATA
66 TAAATTATTTAATTACACAAAGCTTTCTATATTTAAAATTTTATTTTTAAATATATATATATATA
*
11490068 TATATATATAATTACTGACAAGTGATTTAAGGGGGAAGTAAACTTTCTTTTCCATACATTTAAA
131 TATATATATAATTACTGACAAGTGATTTAAGGGGGAAGTAAACTTTCTTTTACATACATTTAAA
11490132 CAATGTCTGA
Statistics
Matches: 193, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 193 1.00
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (200 bp):
TCTAAAGCCTCTTTATAATTTACAATCACATCTTCTTCAGGTGGGATATTAAAGTTGGATATATT
TAAATTATTTAATTACACAAAGCTTTCTATATTTAAAATTTTATTTTTAAATATATATATATATA
TATATATATAATTACTGACAAGTGATTTAAGGGGGAAGTAAACTTTCTTTTACATACATTTAAAA
ACTCT
Found at i:11493917 original size:19 final size:20
Alignment explanation
Indices: 11493873--11493917 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
11493863 AACGTCTCTT
*
11493873 TATGCA-TTCATTTCATGCA
1 TATGCATTTCATTACATGCA
11493892 T-TCGCATTTCATTACAT-CA
1 TAT-GCATTTCATTACATGCA
11493911 TATGCAT
1 TATGCAT
11493918 CAAAGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
18 1 0.05
19 11 0.50
20 10 0.45
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (20 bp):
TATGCATTTCATTACATGCA
Found at i:11498363 original size:132 final size:132
Alignment explanation
Indices: 11498160--11499515 Score: 1858
Period size: 132 Copynumber: 10.3 Consensus size: 132
11498150 CTACCTCCCT
*
11498160 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
11498225 ATTTCAGATCTTGTCTCCCTAAACAGTAGTAGG-GCAGATCAAAGATGGCAGATTTTACCTCCCT
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGT-GGAGCAGATCAAAGATGGCAGATTTTACCTCCCT
*
11498289 ATG
130 GTG
* * **
11498292 GTTACAGTGGAGTACATTGAAGCTAGTAATTCTACTTTCCTGGGCAGCAACGGAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
* * * *
11498357 ATTTCAGATATTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTG
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTG
11498422 TG
131 TG
*
11498424 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
* * * * * * ** * * **
11498489 ATTTCAGATCTTGCCTTCCTACATAGACAGTGAAGCAGATTGAAGACGG-TGAATTTTACCTCAT
66 ATTTCAGATCTTGTCTCCCTAAACAG-TAGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCC
11498553 TGTG
129 TGTG
* * *
11498557 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGCGAAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
* *
11498622 ATTTCAGATCTTGTCTCCCTAAACAGTAGTAGG-GCAGATCAAATATGGTAGATTTTACCTCCCT
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGT-GGAGCAGATCAAAGATGGCAGATTTTACCTCCCT
11498686 GTG
130 GTG
*
11498689 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
* * * *
11498754 ATTTCAAATATTGTCTCCCTAAACAGTAGTGGGGCAGATCAAAGATGG-TGAATTTTACCTCCCT
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCT
11498818 GTG
130 GTG
11498821 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATTGAA
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAA
* * *
11498885 GATTTCAGACCTTGTCTCCCTAAGCAGTAGTGGAGCAGATC-AAGTATGGCAGATTTTACCT-CA
65 GATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAG-ATGGCAGATTTTACCTCCC
11498948 TCGTG
129 T-GTG
* * * *
11498953 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTTCCTAGGCAACAGTGGAATAGTTTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
** * * * * * * * * * *
11499018 ATAGCAGATCTTGCCTTCCTACATAGACAGCGAAACAGATCGAAGATGGCGGATTTTACCT-CCT
66 ATTTCAGATCTTGTCTCCCTAAACAG-TAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCT
11499082 CGTG
130 -GTG
*
11499086 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGCAGTAGTGGAATAGATTGAA
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAA
* * * *
11499150 GATTTCAGACCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCGGATTTTACCT-CCT
65 GATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCT
11499214 CGTG
130 -GTG
*
11499218 GTTACAGTGGAGTACATTGAAGCTAGTAATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATTGAA
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAA
* * *
11499282 TATTTCAGACCTTGTCTCCCTAAGA-AGTAGTGGAGCAAATCAAAGATGGCAGATTTTACCT-CC
65 GATTTCAGATCTTGTCTCCCTAA-ACAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCC
11499345 TCGTG
129 T-GTG
*
11499350 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
* * * * * *
11499415 ATTTCAGATCTTGACTCCCCAAGCAGTAGTGGAGCAGATCAGAGATGG-TGAATTTTACCTCCAT
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCT
11499479 GTG
130 GTG
11499482 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
11499516 TCTCTCTGAA
Statistics
Matches: 1097, Mismatches: 107, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
131 12 0.01
132 851 0.78
133 231 0.21
134 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
ATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTG
TG
Found at i:11498863 original size:397 final size:396
Alignment explanation
Indices: 11498160--11499515 Score: 1934
Period size: 397 Copynumber: 3.4 Consensus size: 396
11498150 CTACCTCCCT
11498160 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAG
11498225 ATTTCAGATCTTGTCTCCCTAAACAGTAGTAGG-GCAGATCAAAGATGGCAGATTTTACCTCCCT
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGTAGGAGCAGATCAAAGATGGCAGATTTTACCTCCCT
* * * *
11498289 ATGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTACTTTCCTGGGCAGCAACGGAATAGATTG
131 GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTG
* *
11498354 AAGATTTCAGATATTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCC
196 AAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGGA-ATTTTACCTCC
* *
11498419 TTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-CTTCCCTGGGCAGCAGCGGAATAGA
260 CTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGCAGTGGAATAGA
* * * * * * * * *
11498483 TTGAAGATTTCAGATCTTGCCTTCCTACATAGACAGTGAAGCAGATTGAAGACGG-TGAATTTTA
324 TTGAAGATTTCAGACCTTGTCTCCCTA-ACAGATAGTGGAGCAGATTAAAGATGGCAG-ATTTTA
*
11498547 CCTCATTGTG
387 CCTCATCGTG
* *
11498557 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGCGAAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAG
* *
11498622 ATTTCAGATCTTGTCTCCCTAAACAGTAGTAGG-GCAGATCAAATATGGTAGATTTTACCTCCCT
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGTAGGAGCAGATCAAAGATGGCAGATTTTACCTCCCT
11498686 GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTG
131 GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTG
* * *
11498751 AAGATTTCAAATATTGTCTCCCTAAACAGTAGTGGGGCAGATCAAAGATGGTGAATTTTACCTCC
196 AAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG-GAATTTTACCTCC
11498816 CTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGAT
260 CTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGAT
*
11498881 TGAAGATTTCAGACCTTGTCTCCCTAAGCAG-TAGTGGAGCAGA-TCAAGTATGGCAGATTTTAC
325 TGAAGATTTCAGACCTTGTCTCCCTAA-CAGATAGTGGAGCAGATTAAAG-ATGGCAGATTTTAC
11498944 CTCATCGTG
388 CTCATCGTG
* * *
11498953 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTTCCTAGG-CAACAGTGGAATAGTTTGAA
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT-GGACAGCAGTGGAATAGATTGAA
** * * * * * *
11499017 GATAGCAGATCTTGCCTTCCT--ACA-TAGACAGCGAAACAGATCGAAGATGGCGGATTTTACCT
65 GATTTCAGATCTTGTCTCCCTAAACAGTAG-TAG-G-AGCAGATCAAAGATGGCAGATTTTACCT
* *
11499079 -CCTCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGCAGTAGTGGAAT
127 CCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGCGGAAT
** * *
11499142 AGATTGAAGATTTCAGACCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCGGATTTT
190 AGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG-GAATTTT
*
11499207 ACCT-CCTCGTGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTATCTCCCTGGGCAGCAGTGG
254 ACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
* * * *
11499271 AATAGATTGAATATTTCAGACCTTGTCTCCCTAAGA-AGTAGTGGAGCAAATCAAAGATGGCAGA
318 AATAGATTGAAGATTTCAGACCTTGTCTCCCTAACAGA-TAGTGGAGCAGATTAAAGATGGCAGA
*
11499335 TTTTACCTCCTCGTG
382 TTTTACCTCATCGTG
* *
11499350 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAG
* * * * * *
11499415 ATTTCAGATCTTGACTCCCCAAGCAGTAGT-GGAGCAGATCAGAGATGG-TGAATTTTACCTCCA
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGTAGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCC
11499478 TGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
130 TGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
11499516 TCTCTCTGAA
Statistics
Matches: 864, Mismatches: 73, Indels: 45
0.88 0.07 0.05
Matches are distributed among these distances:
393 3 0.00
394 5 0.01
395 6 0.01
396 171 0.20
397 668 0.77
398 6 0.01
399 2 0.00
400 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (396 bp):
GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAG
ATTTCAGATCTTGTCTCCCTAAACAGTAGTAGGAGCAGATCAAAGATGGCAGATTTTACCTCCCT
GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTG
AAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGGAATTTTACCTCCC
TGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATT
GAAGATTTCAGACCTTGTCTCCCTAACAGATAGTGGAGCAGATTAAAGATGGCAGATTTTACCTC
ATCGTG
Found at i:11499128 original size:529 final size:527
Alignment explanation
Indices: 11498160--11499515 Score: 2073
Period size: 529 Copynumber: 2.6 Consensus size: 527
11498150 CTACCTCCCT
*
11498160 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
* *
11498225 ATTTCAGATCTTGTCTCCCTAAACAGTAGTAGGGCAGATCAAAGATGGCAGATTTTACCTCCCTA
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACCTCCCTG
* * **
11498290 TGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTACTTTCCTGGGCAGCAACGGAATAGATTGA
131 TGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGA
* * *
11498355 AGATTTCAGATATTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCT
196 AGATTTCAGATCTTGACTCCCTAAGCAGTAGTGGAGCAGATC-AAGATGGCAGATTTTACCT-CA
* *
11498420 TGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATT
259 TGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCAACAGCGGAATAGATT
** * * * *
11498485 GAAGATTTCAGATCTTGCCTTCCTACATAGACAGTGAAGCAGATTGAAGACGGTGAATTTTACCT
324 GAAGATAGCAGATCTTGCCTTCCTACATAGACAGCGAAACAGATCGAAGACGGCGAATTTTACCT
*
11498550 CATTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGCGAAATAG
389 CATCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGCGAAATAG
* * * *
11498615 ATTGAAGATTTCAGATCTTGTCTCCCTAAACAGTAGTAGG-GCAGATCAAATATGGTAGATTTTA
454 ATTGAAGATTTCAGACCTTGTCTCCCTAAACAGTAGT-GGAGCAAATCAAAGATGGCAGATTTTA
11498679 CCTCC-CTGTG
518 CCTCCTC-GTG
*
11498689 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
* * *
11498754 ATTTCAAATATTGTCTCCCTAAACAGTAGTGGGGCAGATCAAAGATGG-TGAATTTTACCTCCCT
66 ATTTCAGATCTTGTCTCCCTAAACAGTAGTGGGGCAGATCAAAGATGGCAG-ATTTTACCTCCCT
11498818 GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATT
130 GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATT
* *
11498882 GAAGATTTCAGACCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAGTATGGCAGATTTTACCTC
194 GAAGATTTCAGATCTTGACTCCCTAAGCAGTAGTGGAGCAGATCAAG-ATGGCAGATTTTACCTC
* * *
11498947 ATCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTTCCTAGGCAACAGTGGAATAGT
258 AT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCAACAGCGGAATAGA
* *
11499012 TTGAAGATAGCAGATCTTGCCTTCCTACATAGACAGCGAAACAGATCGAAGATGGCGGATTTTAC
322 TTGAAGATAGCAGATCTTGCCTTCCTACATAGACAGCGAAACAGATCGAAGACGGCGAATTTTAC
* * * * *
11499077 CTCCTCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTGGGCAGTAGTGGAA
387 CTCATCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGACAGCAGCGAAA
* *
11499141 TAGATTGAAGATTTCAGACCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCGGATTT
451 TAGATTGAAGATTTCAGACCTTGTCTCCCTAAACAGTAGTGGAGCAAATCAAAGATGGCAGATTT
11499206 TACCTCCTCGTG
516 TACCTCCTCGTG
*
11499218 GTTACAGTGGAGTACATTGAAGCTAGTAATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATTGAA
1 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAA
* * * *
11499282 TATTTCAGACCTTGTCTCCCTAAGA-AGTAGTGGAGCAAATCAAAGATGGCAGATTTTACCT-CC
65 GATTTCAGATCTTGTCTCCCTAA-ACAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACCTCCC
11499345 TCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGAT
129 T-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGAT
* * *
11499410 TAAAGATTTCAGATCTTGACTCCCCAAGCAGTAGTGGAGCAGATCAGAGATGG-TGAATTTTACC
193 TGAAGATTTCAGATCTTGACTCCCTAAGCAGTAGTGGAGCAGATCA-AGATGGCAG-ATTTTACC
11499474 TCCATGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
256 T-CATGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
11499516 TCTCTCTGAA
Statistics
Matches: 758, Mismatches: 54, Indels: 30
0.90 0.06 0.04
Matches are distributed among these distances:
528 15 0.02
529 734 0.97
530 9 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (527 bp):
GTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAG
ATTTCAGATCTTGTCTCCCTAAACAGTAGTGGGGCAGATCAAAGATGGCAGATTTTACCTCCCTG
TGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGA
AGATTTCAGATCTTGACTCCCTAAGCAGTAGTGGAGCAGATCAAGATGGCAGATTTTACCTCATG
TGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCAACAGCGGAATAGATTGA
AGATAGCAGATCTTGCCTTCCTACATAGACAGCGAAACAGATCGAAGACGGCGAATTTTACCTCA
TCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAGCAGCGAAATAGAT
TGAAGATTTCAGACCTTGTCTCCCTAAACAGTAGTGGAGCAAATCAAAGATGGCAGATTTTACCT
CCTCGTG
Found at i:11499707 original size:20 final size:20
Alignment explanation
Indices: 11499682--11499719 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
11499672 CATCTCCTCG
11499682 ACATTACAGTGGAGTAGACA
1 ACATTACAGTGGAGTAGACA
11499702 ACATTACAGTGGAGTAGA
1 ACATTACAGTGGAGTAGA
11499720 TCGAAGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.21
Consensus pattern (20 bp):
ACATTACAGTGGAGTAGACA
Found at i:11500826 original size:3 final size:3
Alignment explanation
Indices: 11500813--11500851 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
11500803 AGCCCTTCTG
11500813 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
11500852 ACTTATACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:11510951 original size:11 final size:11
Alignment explanation
Indices: 11510935--11510960 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11510925 AAAAGGTCTC
11510935 TTTTTTCTTTT
1 TTTTTTCTTTT
11510946 TTTTTTCTTTT
1 TTTTTTCTTTT
11510957 TTTT
1 TTTT
11510961 GCTTCCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:11516222 original size:64 final size:64
Alignment explanation
Indices: 11516107--11516233 Score: 155
Period size: 64 Copynumber: 2.0 Consensus size: 64
11516097 ACAAAGAGCC
* * * * * * ** * * *
11516107 TATATCAGGACGTTCATAAAGAGTTGCGGTATGTCCGCATTATATGTAGGATCCATACCGATCA
1 TATAACAGGACGCTCACAAAGAGCTGCGATATATCCGCAACACATGCAGGATCAATACCGATCA
11516171 TATAACAGGACGCTCACAAAGAGCTGCGATATATCCGCAACACATGCAGGATCAATACCGATC
1 TATAACAGGACGCTCACAAAGAGCTGCGATATATCCGCAACACATGCAGGATCAATACCGATC
11516234 GGGATGCTCG
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (64 bp):
TATAACAGGACGCTCACAAAGAGCTGCGATATATCCGCAACACATGCAGGATCAATACCGATCA
Found at i:11516631 original size:21 final size:21
Alignment explanation
Indices: 11516607--11516648 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
11516597 TGAATTTAAC
* *
11516607 TCAATTTAATGCAATTCACAT
1 TCAATTCAATCCAATTCACAT
*
11516628 TCAATTCCATCCAATTCACAT
1 TCAATTCAATCCAATTCACAT
11516649 CCTAGGTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (21 bp):
TCAATTCAATCCAATTCACAT
Found at i:11516634 original size:11 final size:11
Alignment explanation
Indices: 11516618--11516650 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
11516608 CAATTTAATG
*
11516618 CAATTCACATT
1 CAATTCACATC
11516629 CAATTC-CATC
1 CAATTCACATC
11516639 CAATTCACATC
1 CAATTCACATC
11516650 C
1 C
11516651 TAGGTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.30
Consensus pattern (11 bp):
CAATTCACATC
Found at i:11523800 original size:11 final size:11
Alignment explanation
Indices: 11523786--11523816 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
11523776 AGAAAAATAT
11523786 TATTTTATTAA
1 TATTTTATTAA
*
11523797 TATTTTATTAT
1 TATTTTATTAA
11523808 TATTTTATT
1 TATTTTATT
11523817 TAGTATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:11530566 original size:50 final size:50
Alignment explanation
Indices: 11530499--11530633 Score: 207
Period size: 50 Copynumber: 2.7 Consensus size: 50
11530489 TTTTTTGTAC
* * * **
11530499 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
11530549 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
11530599 TGCCAACGCCATGTCCCAGACATGGTCATACATGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGG
11530634 CTCACATATT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 78 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:11535430 original size:17 final size:19
Alignment explanation
Indices: 11535409--11535448 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
11535399 GGTTATGGCC
11535409 AAAAAAA-GTTTATATTAT
1 AAAAAAATGTTTATATTAT
*
11535427 AAAAAAATGTTTATTTTAT
1 AAAAAAATGTTTATATTAT
11535446 AAA
1 AAA
11535449 GTTATAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
AAAAAAATGTTTATATTAT
Found at i:11537078 original size:20 final size:20
Alignment explanation
Indices: 11537053--11537090 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11537043 GCCATTTTTA
11537053 TTTTTA-TTATAATTTTTATT
1 TTTTTAGTT-TAATTTTTATT
11537073 TTTTTAGTTTAATTTTTA
1 TTTTTAGTTTAATTTTTA
11537091 CATTATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTTAGTTTAATTTTTATT
Found at i:11539407 original size:12 final size:12
Alignment explanation
Indices: 11539390--11539414 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11539380 ACCTTCTCTG
11539390 CAAGAAATCCCA
1 CAAGAAATCCCA
11539402 CAAGAAATCCCA
1 CAAGAAATCCCA
11539414 C
1 C
11539415 GAGAGATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.36, G:0.08, T:0.08
Consensus pattern (12 bp):
CAAGAAATCCCA
Found at i:11539673 original size:287 final size:287
Alignment explanation
Indices: 11539157--11539688 Score: 913
Period size: 287 Copynumber: 1.9 Consensus size: 287
11539147 ATATTCCCTG
*
11539157 TTGACTTTGTTGTTTTAGACATTGATGAGGACAGTGAGGTACCTTTAATTTTAGGACGACCCTTT
1 TTGACTTTGTTGTTTTAGACATGGATGAGGACAGTGAGGTACCTTTAATTTTAGGACGACCCTTT
* *
11539222 TTAACAACTGCTAGAACCATAACTGATGTTGGTACTGGTGAGTTAATACCTTGTGTAGGTGACGA
66 TTAACAACTACTAGAACCATAACTGATGTTGGTACGGGTGAGTTAATACCTTGTGTAGGTGACGA
* * * * *
11539287 ATCAATTACTCTTCAAGCTTATGATTCTGTTATAACATCTAGTGATTAAGATGATTTTAAATCTT
131 ATCAATTACTCTACAAGCTCATGATCCTGTTATAACATATAGTGATCAAGATGATTTTAAATCTT
11539352 CTGTTAATGGTAGTGACCATGTGGCTCAACCTTCTCTGCAAGAAATCCCACAAGAAATCCCACGA
196 CTGTTAATGGTAGTGACCATGTGGCTCAACCTTCTCTGCAAGAAATCCCACAAGAAATCCCACGA
11539417 GAGATCATAAAGGAGCTCGTGATTCTA
261 GAGATCATAAAGGAGCTCGTGATTCTA
* *
11539444 TTGACTTTGTTGTTTTAGACATGGATGAGGACAGTGAGGTACCTTTAATTTTAGGGCGGCCCTTT
1 TTGACTTTGTTGTTTTAGACATGGATGAGGACAGTGAGGTACCTTTAATTTTAGGACGACCCTTT
* *
11539509 TTAGCAACTACTAGAACCATAATTGATGTTGGTACGGGTGAGTTAATA-CTTCGTGTAGGTGACG
66 TTAACAACTACTAGAACCATAACTGATGTTGGTACGGGTGAGTTAATACCTT-GTGTAGGTGACG
* *
11539573 AATCGATTACTCTACAAGCTCGTGATCCTGTTATAACATATAGTGATCAAGATGATTTTAAATCT
130 AATCAATTACTCTACAAGCTCATGATCCTGTTATAACATATAGTGATCAAGATGATTTTAAATCT
*
11539638 TCTGTTAATGGTAGTGACCATGTGGCTTAACCTTCTCTGCAAGAAATCCCA
195 TCTGTTAATGGTAGTGACCATGTGGCTCAACCTTCTCTGCAAGAAATCCCA
11539689 TGAGAGATCA
Statistics
Matches: 229, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
286 3 0.01
287 226 0.99
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (287 bp):
TTGACTTTGTTGTTTTAGACATGGATGAGGACAGTGAGGTACCTTTAATTTTAGGACGACCCTTT
TTAACAACTACTAGAACCATAACTGATGTTGGTACGGGTGAGTTAATACCTTGTGTAGGTGACGA
ATCAATTACTCTACAAGCTCATGATCCTGTTATAACATATAGTGATCAAGATGATTTTAAATCTT
CTGTTAATGGTAGTGACCATGTGGCTCAACCTTCTCTGCAAGAAATCCCACAAGAAATCCCACGA
GAGATCATAAAGGAGCTCGTGATTCTA
Found at i:11544144 original size:21 final size:20
Alignment explanation
Indices: 11544114--11544164 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
11544104 ATTGAGTTTT
*
11544114 TTTTTCTTTTTTGATTTTCG
1 TTTTTCTTTTTCGATTTTCG
11544134 TTTTTCGTTTTTCGATTTTCG
1 TTTTTC-TTTTTCGATTTTCG
11544155 -TTTTCTTTTT
1 TTTTTCTTTTT
11544165 ATTATTTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 5 0.17
20 11 0.38
21 13 0.45
ACGTcount: A:0.04, C:0.12, G:0.10, T:0.75
Consensus pattern (20 bp):
TTTTTCTTTTTCGATTTTCG
Found at i:11544184 original size:6 final size:6
Alignment explanation
Indices: 11544166--11544229 Score: 58
Period size: 6 Copynumber: 10.2 Consensus size: 6
11544156 TTTCTTTTTA
* **
11544166 TTATTT TTCTTT TTA-TT TTAGCT TTATTT TTATTT TTATTTT TTAGTTTCT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTA-TTT TTA--TT-T
11544217 TTATTT TTATTT T
1 TTATTT TTATTT T
11544230 CTTAGACTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
5 5 0.10
6 29 0.59
7 8 0.16
8 3 0.06
9 4 0.08
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:11544218 original size:28 final size:27
Alignment explanation
Indices: 11544156--11544229 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
11544146 CGATTTTCGT
* *
11544156 TTTCTTT-TTATTATTTTTCTTTTTAT
1 TTTCTTTATTTTTATTTTTCTTTTTAG
*
11544182 TTTAGCTTTATTTTTATTTTTATTTTTTAG
1 TTT--CTTTATTTTTATTTTT-CTTTTTAG
11544212 TTTCTTTATTTTTATTTT
1 TTTCTTTATTTTTATTTT
11544230 CTTAGACTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
26 3 0.07
28 19 0.46
29 10 0.24
30 9 0.22
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (27 bp):
TTTCTTTATTTTTATTTTTCTTTTTAG
Found at i:11547479 original size:21 final size:21
Alignment explanation
Indices: 11547455--11547594 Score: 97
Period size: 21 Copynumber: 6.8 Consensus size: 21
11547445 CGTGTTTGCT
*
11547455 TTCAGTTTAGCTCTTATGAGC
1 TTCAGTTTAACTCTTATGAGC
* *
11547476 TTCAG-TTAACTCATATGAGT
1 TTCAGTTTAACTCTTATGAGC
* *
11547496 TTCAGTTTAACCCTTCA-G-GT
1 TTCAGTTTAACTCTT-ATGAGC
* * * *
11547516 TTTAGTTCAGCTCTTTTGAGC
1 TTCAGTTTAACTCTTATGAGC
* * *
11547537 TTCAGTTTAACCCTTATGGGT
1 TTCAGTTTAACTCTTATGAGC
* * *
11547558 TTCCGTTCAGCTCTTATGAGC
1 TTCAGTTTAACTCTTATGAGC
* *
11547579 TTCCGTTTAACCCTTA
1 TTCAGTTTAACTCTTA
11547595 CGAGTTTCCA
Statistics
Matches: 88, Mismatches: 27, Indels: 8
0.72 0.22 0.07
Matches are distributed among these distances:
20 31 0.35
21 56 0.64
22 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.42
Consensus pattern (21 bp):
TTCAGTTTAACTCTTATGAGC
Found at i:11547494 original size:20 final size:20
Alignment explanation
Indices: 11547455--11547502 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
11547445 CGTGTTTGCT
* *
11547455 TTCAGTTTAGCTCTTATGAGC
1 TTCAG-TTAACTCATATGAGC
*
11547476 TTCAGTTAACTCATATGAGT
1 TTCAGTTAACTCATATGAGC
11547496 TTCAGTT
1 TTCAGTT
11547503 TAACCCTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.44
Consensus pattern (20 bp):
TTCAGTTAACTCATATGAGC
Found at i:11547541 original size:41 final size:41
Alignment explanation
Indices: 11547476--11547594 Score: 143
Period size: 42 Copynumber: 2.9 Consensus size: 41
11547466 TCTTATGAGC
* * *
11547476 TTCAGTT-AACTCATATGAGTTTCAGTTTAACCCTTCA-GGT
1 TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTT-AGGGT
* *
11547516 TTTAGTTCAGCTCTTTTGAGCTTCAGTTTAACCCTTATGGGT
1 TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTA-GGGT
* *
11547558 TTCCGTTCAGCTCTTATGAGCTTCCGTTTAACCCTTA
1 TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTA
11547595 CGAGTTTCCA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
40 7 0.10
41 24 0.36
42 36 0.54
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (41 bp):
TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTAGGGT
Found at i:11547571 original size:42 final size:41
Alignment explanation
Indices: 11547489--11547623 Score: 146
Period size: 42 Copynumber: 3.2 Consensus size: 41
11547479 AGTTAACTCA
* **
11547489 TATGAGTTTCAGTTTAACCCTTCA-GGTTTTAGTTCAGCTCT
1 TATGAGCTTCAGTTTAACCCTT-AGGGTTTCCGTTCAGCTCT
*
11547530 TTTGAGCTTCAGTTTAACCCTTATGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCAGTTTAACCCTTA-GGGTTTCCGTTCAGCTCT
* * * * *
11547572 TATGAGCTTCCGTTTAACCCTTACGAGTTTCCATTTAGCACT
1 TATGAGCTTCAGTTTAACCCTTA-GGGTTTCCGTTCAGCTCT
*
11547614 TATGTGCTTC
1 TATGAGCTTC
11547624 TTTGCAGCCT
Statistics
Matches: 80, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
40 1 0.01
41 20 0.25
42 59 0.74
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (41 bp):
TATGAGCTTCAGTTTAACCCTTAGGGTTTCCGTTCAGCTCT
Found at i:11547603 original size:21 final size:21
Alignment explanation
Indices: 11547467--11547617 Score: 74
Period size: 21 Copynumber: 7.3 Consensus size: 21
11547457 CAGTTTAGCT
* * *
11547467 CTTATGAGCTTCAG-TTAACT
1 CTTATGAGTTTCCGTTTAACC
* *
11547487 CATATGAGTTTCAGTTTAACC
1 CTTATGAGTTTCCGTTTAACC
** * * *
11547508 CTTCA-G-GTTTTAGTTCAGCT
1 CTT-ATGAGTTTCCGTTTAACC
* * *
11547528 CTTTTGAGCTTCAGTTTAACC
1 CTTATGAGTTTCCGTTTAACC
* * * *
11547549 CTTATGGGTTTCCGTTCAGCT
1 CTTATGAGTTTCCGTTTAACC
*
11547570 CTTATGAGCTTCCGTTTAACC
1 CTTATGAGTTTCCGTTTAACC
* * * *
11547591 CTTACGAGTTTCCATTTAGCA
1 CTTATGAGTTTCCGTTTAACC
11547612 CTTATG
1 CTTATG
11547618 TGCTTCTTTG
Statistics
Matches: 95, Mismatches: 32, Indels: 7
0.71 0.24 0.05
Matches are distributed among these distances:
20 26 0.27
21 68 0.72
22 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.41
Consensus pattern (21 bp):
CTTATGAGTTTCCGTTTAACC
Found at i:11550904 original size:33 final size:33
Alignment explanation
Indices: 11550862--11550929 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
11550852 ATGATTCAAG
* *
11550862 GAATAGTGAGATTCCTTACAAAGTTTATGAGAT
1 GAATAGTGAGATTCATTACAAAGTTTATGAAAT
* *
11550895 GAATAGTGAGATTCATTGCAAAGTTTCTGAAAT
1 GAATAGTGAGATTCATTACAAAGTTTATGAAAT
11550928 GA
1 GA
11550930 TTCAGGGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (33 bp):
GAATAGTGAGATTCATTACAAAGTTTATGAAAT
Found at i:11551026 original size:29 final size:30
Alignment explanation
Indices: 11550974--11551038 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
11550964 GTAGATTCCC
*
11550974 TGCAAAAGTATCTAAAATAGTAATAATGTA
1 TGCAAAACTATCTAAAATAGTAATAATGTA
** *
11551004 TGCAAAACTAT-TAAAATTTTAATGATGTA
1 TGCAAAACTATCTAAAATAGTAATAATGTA
11551033 TGCAAA
1 TGCAAA
11551039 TAGATTCCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (30 bp):
TGCAAAACTATCTAAAATAGTAATAATGTA
Found at i:11557152 original size:20 final size:20
Alignment explanation
Indices: 11557127--11557166 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
11557117 CGTAAACTGA
*
11557127 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
11557147 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
11557167 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:11557156 original size:34 final size:34
Alignment explanation
Indices: 11557113--11557178 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 34
11557103 AGTAAAATAT
* *
11557113 TTTTCGTAAACTGATTT-CTGGAAAATGTTTTAC
1 TTTTCGTAAAATGATTTACTGGAAAATATTTTAC
11557146 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTC-GTAAAATGATTTACTGGAAAATATTTT
11557179 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 11 0.38
35 13 0.45
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (34 bp):
TTTTCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:11561164 original size:17 final size:18
Alignment explanation
Indices: 11561142--11561175 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11561132 AATCCATACA
11561142 AACTCAATCATT-TCATC
1 AACTCAATCATTATCATC
*
11561159 AACTCATTCATTATCAT
1 AACTCAATCATTATCAT
11561176 TTCTATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.38
Consensus pattern (18 bp):
AACTCAATCATTATCATC
Found at i:11566761 original size:18 final size:18
Alignment explanation
Indices: 11566717--11566766 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
11566707 TTTAATTTTG
11566717 TTCTACTTATTT-TTT-AT
1 TTCTA-TTATTTATTTAAT
11566734 TTC-ATT-TTTATTTAAT
1 TTCTATTATTTATTTAAT
11566750 TTCTATTATTTATTTAA
1 TTCTATTATTTATTTAA
11566767 GATTTATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.10
15 5 0.17
16 6 0.21
17 6 0.21
18 9 0.31
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (18 bp):
TTCTATTATTTATTTAAT
Found at i:11570261 original size:24 final size:24
Alignment explanation
Indices: 11570234--11570285 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
11570224 TTAGTAAGTC
*
11570234 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
11570258 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
11570282 AAAT
1 AAAT
11570286 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:11571571 original size:46 final size:45
Alignment explanation
Indices: 11571479--11571580 Score: 118
Period size: 46 Copynumber: 2.2 Consensus size: 45
11571469 TGTGTTGATT
*
11571479 TAAAAAAAGAAAAAGCCCTAAGACATGCAAATGCATCGTGTCGAA
1 TAAAAAAAGAAAAAGCCCTAACACATGCAAATGCATCGTGTCGAA
** * *
11571524 TAAAAAGAAGAAAAAGCTGTAACACATGCAGATGCA-C-TGAATTGAA
1 TAAAAA-AAGAAAAAGCCCTAACACATGCAAATGCATCGTG--TCGAA
11571570 TAAAAAAAGAA
1 TAAAAAAAGAA
11571581 TAATATATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
44 2 0.04
45 12 0.24
46 35 0.71
ACGTcount: A:0.53, C:0.14, G:0.18, T:0.16
Consensus pattern (45 bp):
TAAAAAAAGAAAAAGCCCTAACACATGCAAATGCATCGTGTCGAA
Found at i:11581989 original size:17 final size:18
Alignment explanation
Indices: 11581962--11581995 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
11581952 CCTTCATTTC
11581962 TTTCTTTTATTCTTTTAG
1 TTTCTTTTATTCTTTTAG
11581980 TTTC-TTTATTCTTTTA
1 TTTCTTTTATTCTTTTA
11581996 TTGATTGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTCTTTTATTCTTTTAG
Found at i:11582304 original size:19 final size:19
Alignment explanation
Indices: 11582280--11582318 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
11582270 TTCATAATAT
11582280 AATAAT-ATAATATCAATTA
1 AATAATAATAA-ATCAATTA
*
11582299 AATAATAATAACTCAATTA
1 AATAATAATAAATCAATTA
11582318 A
1 A
11582319 TGTGTGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAATAATAAATCAATTA
Found at i:11595791 original size:23 final size:23
Alignment explanation
Indices: 11595758--11595810 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
11595748 ATATATAAAC
*
11595758 GTATACTAAAAAACATATGTGCAT
1 GTATA-TAAAAAACATATGCGCAT
*
11595782 -TATATAAAAAACCTATGCGCAT
1 GTATATAAAAAACATATGCGCAT
11595804 GTATATA
1 GTATATA
11595811 CAGTAGTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 16 0.62
23 10 0.38
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.30
Consensus pattern (23 bp):
GTATATAAAAAACATATGCGCAT
Found at i:11596480 original size:15 final size:15
Alignment explanation
Indices: 11596460--11596490 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11596450 AAACAGGAGA
*
11596460 AAAACAAAACAAAAT
1 AAAACAAAAAAAAAT
11596475 AAAACAAAAAAAAAT
1 AAAACAAAAAAAAAT
11596490 A
1 A
11596491 GAAAGAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.84, C:0.10, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAACAAAAAAAAAT
Found at i:11597173 original size:9 final size:9
Alignment explanation
Indices: 11597159--11597284 Score: 154
Period size: 9 Copynumber: 14.4 Consensus size: 9
11597149 TTTGGTTAAA
11597159 AATTAACCG
1 AATTAACCG
11597168 AATTAACCG
1 AATTAACCG
11597177 AATT-ACCTG
1 AATTAACC-G
11597186 AATTAACCG
1 AATTAACCG
11597195 ----AACCG
1 AATTAACCG
*
11597200 AATTACCCG
1 AATTAACCG
11597209 AATTAACCG
1 AATTAACCG
*
11597218 AATTACCCG
1 AATTAACCG
11597227 AATTAACCG
1 AATTAACCG
*
11597236 AATTACCCG
1 AATTAACCG
11597245 AATTAACCG
1 AATTAACCG
*
11597254 AATTACCCG
1 AATTAACCG
*
11597263 AATTAACCA
1 AATTAACCG
*
11597272 AATTAACCA
1 AATTAACCG
11597281 AATT
1 AATT
11597285 GAATCACTAC
Statistics
Matches: 102, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
5 5 0.05
8 3 0.03
9 91 0.89
10 3 0.03
ACGTcount: A:0.42, C:0.25, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTAACCG
Found at i:11597189 original size:27 final size:27
Alignment explanation
Indices: 11597159--11597284 Score: 170
Period size: 27 Copynumber: 4.8 Consensus size: 27
11597149 TTTGGTTAAA
*
11597159 AATTAACCGAATTAACCGAATTACCTG
1 AATTAACCGAATTAACCGAATTACCCG
11597186 AATTAACCG----AACCGAATTACCCG
1 AATTAACCGAATTAACCGAATTACCCG
* *
11597209 AATTAACCGAATTACCCGAATTAACCG
1 AATTAACCGAATTAACCGAATTACCCG
*
11597236 AATTACCCGAATTAACCGAATTACCCG
1 AATTAACCGAATTAACCGAATTACCCG
* *
11597263 AATTAACCAAATTAACCAAATT
1 AATTAACCGAATTAACCGAATT
11597285 GAATCACTAC
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
23 22 0.26
27 64 0.74
ACGTcount: A:0.42, C:0.25, G:0.10, T:0.23
Consensus pattern (27 bp):
AATTAACCGAATTAACCGAATTACCCG
Found at i:11598259 original size:31 final size:31
Alignment explanation
Indices: 11598155--11598268 Score: 96
Period size: 31 Copynumber: 3.8 Consensus size: 31
11598145 TCGGTACTTG
*
11598155 AACTTGACACTTTTTCTTAATTTGCTACCTA
1 AACTTGACACTTTTTCTTAATTTGGTACCTA
* * *
11598186 AACTT-----TTTTTGGTCCAATTTGGTACCCA
1 AACTTGACACTTTTT-CT-TAATTTGGTACCTA
* *
11598214 AATTTGACAATTTTTCTTAATTTGGTACCTA
1 AACTTGACACTTTTTCTTAATTTGGTACCTA
*
11598245 AACTTGACTCTTTTT-TCTAATTTG
1 AACTTGACACTTTTTCT-TAATTTG
11598269 ATACATTTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
26 5 0.08
27 1 0.02
28 15 0.23
30 1 0.02
31 36 0.56
32 1 0.02
33 5 0.08
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.47
Consensus pattern (31 bp):
AACTTGACACTTTTTCTTAATTTGGTACCTA
Found at i:11606597 original size:22 final size:22
Alignment explanation
Indices: 11606572--11606617 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
11606562 GGGGGGAGAA
*
11606572 ACTGGAATTATTTATCCCTTTT
1 ACTGGAATTATTTATCCCCTTT
11606594 ACTGGAATTATTTATCCCCTTT
1 ACTGGAATTATTTATCCCCTTT
11606616 AC
1 AC
11606618 ACCCCCTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.46
Consensus pattern (22 bp):
ACTGGAATTATTTATCCCCTTT
Found at i:11617037 original size:21 final size:21
Alignment explanation
Indices: 11617013--11617084 Score: 99
Period size: 21 Copynumber: 3.4 Consensus size: 21
11617003 ATAACCTCAC
*
11617013 TTTTGACCATCATCATAACAA
1 TTTTGACCATCACCATAACAA
*
11617034 TTTTGACCAGCACCATAACAA
1 TTTTGACCATCACCATAACAA
* * *
11617055 TTTGGACCATCACCACAACTA
1 TTTTGACCATCACCATAACAA
11617076 TTTTGACCA
1 TTTTGACCA
11617085 AGGTTATTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (21 bp):
TTTTGACCATCACCATAACAA
Found at i:11618273 original size:20 final size:20
Alignment explanation
Indices: 11618236--11618274 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11618226 TTAACTAAAC
*
11618236 ACTAACTACCTCCCTAACAG
1 ACTAACTACATCCCTAACAG
* *
11618256 ACTAACTATATCCTTAACA
1 ACTAACTACATCCCTAACA
11618275 TATATAAATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.33, G:0.03, T:0.26
Consensus pattern (20 bp):
ACTAACTACATCCCTAACAG
Found at i:11620121 original size:17 final size:17
Alignment explanation
Indices: 11620101--11620136 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11620091 ATAATAAACT
11620101 ATAATATATAATATATA
1 ATAATATATAATATATA
* *
11620118 ATAATATGTACTATATA
1 ATAATATATAATATATA
11620135 AT
1 AT
11620137 GTACTACTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (17 bp):
ATAATATATAATATATA
Found at i:11620278 original size:18 final size:17
Alignment explanation
Indices: 11620229--11620279 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
11620219 ATTAATACAC
11620229 ACATATAAACTATTAAT
1 ACATATAAACTATTAAT
* *
11620246 A-TTACTAAAAATATTAAT
1 ACATA-T-AAACTATTAAT
11620264 ACATATATAACTATTA
1 ACATATA-AACTATTA
11620280 TTATAATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
16 2 0.08
17 3 0.12
18 19 0.73
19 2 0.08
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (17 bp):
ACATATAAACTATTAAT
Found at i:11623322 original size:3 final size:3
Alignment explanation
Indices: 11623309--11623339 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
11623299 CACTGAGAGA
11623309 AAG AA- AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
11623340 AAGGAGTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:11628632 original size:15 final size:17
Alignment explanation
Indices: 11628612--11628645 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
11628602 CACATAATTT
11628612 ATTTTTTA-TA-ATATA
1 ATTTTTTAGTATATATA
11628627 ATTTTTTAGTATATATA
1 ATTTTTTAGTATATATA
11628644 AT
1 AT
11628646 ATAATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 2 0.12
17 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTTTTTAGTATATATA
Found at i:11630662 original size:88 final size:81
Alignment explanation
Indices: 11630524--11630754 Score: 228
Period size: 84 Copynumber: 2.7 Consensus size: 81
11630514 CTATTTAGTC
* * * * * *
11630524 CTTTATTATTTTTTATACCATTGTTTCTATTCTTCGTGTACCTTTTAAACCCTTAAATAGAAAGG
1 CTTTATTATTTTTTATACCATT-TTTTTATTATTCATAT-GCTTTCAAACCCTTAAATAGAAA-G
* *
11630589 CTAGCTAGTGTTTCTATTTGATT
63 --A-CTAATATTTCTATTTGA-T
* * * *
11630612 CTTTATTATTTTTTATACAATTTTTGTTATTATTCATATGTCTTTCAAACCTTTAAGTCGAAAGA
1 CTTTATTATTTTTTATACCATTTTT-TTATTATTCATATG-CTTTCAAACCCTTAAATAGAAAGA
*
11630677 TTAATATTTCTATTTGAT
64 CTAATATTTCTATTTGAT
*
11630695 CTTTTATTATGTTTTATACCATTTTTATTATTATTCATATAGCTTTCAAACCCTTAAATA
1 C-TTTATTATTTTTTATACCATTTTT-TTATTATTCATAT-GCTTTCAAACCCTTAAATA
11630755 CGTGGATTGG
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
83 2 0.02
84 64 0.53
85 2 0.02
87 4 0.03
88 48 0.40
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (81 bp):
CTTTATTATTTTTTATACCATTTTTTTATTATTCATATGCTTTCAAACCCTTAAATAGAAAGACT
AATATTTCTATTTGAT
Found at i:11634311 original size:42 final size:42
Alignment explanation
Indices: 11634245--11634333 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
11634235 AACCATAATT
* **
11634245 GGTTTTCGTTCAGCTTTTTTGAGCTTCAGCTT-AACCCTTATA
1 GGTTTTCGTTCAGCTCTTACGAGCTTCAG-TTCAACCCTTATA
* *
11634287 GGTTTTCGTTCAGCTCTTACGAGCTTCCGTTCAACCCTTATG
1 GGTTTTCGTTCAGCTCTTACGAGCTTCAGTTCAACCCTTATA
11634329 GGTTT
1 GGTTT
11634334 CTGTTTAGCA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
41 2 0.05
42 39 0.95
ACGTcount: A:0.15, C:0.24, G:0.19, T:0.43
Consensus pattern (42 bp):
GGTTTTCGTTCAGCTCTTACGAGCTTCAGTTCAACCCTTATA
Found at i:11636846 original size:147 final size:148
Alignment explanation
Indices: 11636680--11636974 Score: 583
Period size: 147 Copynumber: 2.0 Consensus size: 148
11636670 TTAATATTTT
11636680 TAAAATTTTTATAATTCTATAAATAATTTTCAAAATACTTTTTATATAATAAATGTTATTGATAT
1 TAAAATTTTTATAATTCTATAAATAATTTTCAAAATACTTTTTATATAATAAATGTTATTGATAT
11636745 TATAATTTAAATTTGTTTAATTTTTTTAATAGCATGAAAACGAAATTAATCTATTTAATAATAGA
66 TATAATTTAAATTTGTTTAATTTTTTTAATAGCATGAAAACGAAATTAATCTATTTAATAATAGA
11636810 GAATTCTCTATCATGCAA
131 GAATTCTCTATCATGCAA
11636828 TAAAATTTTT-TAATTCTATAAATAATTTTCAAAATACTTTTTATATAATAAATGTTATTGATAT
1 TAAAATTTTTATAATTCTATAAATAATTTTCAAAATACTTTTTATATAATAAATGTTATTGATAT
11636892 TATAATTTAAATTTGTTTAATTTTTTTAATAGCATGAAAACGAAATTAATCTATTTAATAATAGA
66 TATAATTTAAATTTGTTTAATTTTTTTAATAGCATGAAAACGAAATTAATCTATTTAATAATAGA
11636957 GAATTCTCTATCATGCAA
131 GAATTCTCTATCATGCAA
11636975 GAACGTTCCA
Statistics
Matches: 147, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
147 137 0.93
148 10 0.07
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (148 bp):
TAAAATTTTTATAATTCTATAAATAATTTTCAAAATACTTTTTATATAATAAATGTTATTGATAT
TATAATTTAAATTTGTTTAATTTTTTTAATAGCATGAAAACGAAATTAATCTATTTAATAATAGA
GAATTCTCTATCATGCAA
Found at i:11659496 original size:21 final size:21
Alignment explanation
Indices: 11659470--11659522 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
11659460 GGCGGTGGCG
* * *
11659470 GTGAGATTAGTTATTGTAGTA
1 GTGAGATTAGATACTGTAGCA
* *
11659491 GTGAGATTGGATACTGTAGCG
1 GTGAGATTAGATACTGTAGCA
11659512 GTGAGATTAGA
1 GTGAGATTAGA
11659523 AACAGCAGTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.28, C:0.04, G:0.34, T:0.34
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCA
Done.