Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 38 of 210
Found at i:13613640 original size:20 final size:19
Alignment explanation
Indices: 13613615--13613670 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
13613605 TAAAATTTGG
13613615 AATTTTTATAAATATTTTA
1 AATTTTTATAAATATTTTA
* * *
13613634 AAATTTTAAAAATTATTTTG
1 AATTTTTATAAA-TATTTTA
*
13613654 AATTTTTGTAAA-ATTTT
1 AATTTTTATAAATATTTT
13613671 TATTGAAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
18 5 0.17
19 10 0.33
20 15 0.50
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (19 bp):
AATTTTTATAAATATTTTA
Found at i:13632773 original size:30 final size:32
Alignment explanation
Indices: 13632714--13632773 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
13632704 ATATATTATA
* * *
13632714 ATATTATATCTTAATTATTAAGTATATATATT
1 ATATTATATATTAATTAATAAGTAAATATATT
13632746 ATATTATATATT-A-TAATAAGTAAATATA
1 ATATTATATATTAATTAATAAGTAAATATA
13632774 ATAAATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 13 0.52
31 1 0.04
32 11 0.44
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (32 bp):
ATATTATATATTAATTAATAAGTAAATATATT
Found at i:13632773 original size:32 final size:33
Alignment explanation
Indices: 13632700--13632773 Score: 80
Period size: 35 Copynumber: 2.2 Consensus size: 33
13632690 CTTAAAGTTA
* *
13632700 AAATATATATTATAATATTATATCTTAATTATT
1 AAATATATATTATAATATTATATCTTAATAAGT
*
13632733 AAGTATATATATTATATTA-TATAT-TATAATAAGT
1 AA--ATATATATTATAATATTATATCT-TAATAAGT
13632767 AAATATA
1 AAATATA
13632774 ATAAATAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
32 5 0.14
33 3 0.09
34 13 0.37
35 14 0.40
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (33 bp):
AAATATATATTATAATATTATATCTTAATAAGT
Found at i:13633814 original size:370 final size:370
Alignment explanation
Indices: 13633133--13633872 Score: 1480
Period size: 370 Copynumber: 2.0 Consensus size: 370
13633123 GTTGTGAAAA
13633133 AAATCAAAATTTAGGAATTTAAGTGAAAATAGGGAGTTAATTTTAGATTAAAGTAGAATTTGTAT
1 AAATCAAAATTTAGGAATTTAAGTGAAAATAGGGAGTTAATTTTAGATTAAAGTAGAATTTGTAT
13633198 GAAAATATAAGATTAATTGTGAAGAAATAAAATTAGTCTCGATTTAGGGACTAAATTGAAATTTA
66 GAAAATATAAGATTAATTGTGAAGAAATAAAATTAGTCTCGATTTAGGGACTAAATTGAAATTTA
13633263 GGCAATATTTGAGTAAAATTTGAAATATTCGATATGAAATTGAATTGTGTTGTATTGATGATTTT
131 GGCAATATTTGAGTAAAATTTGAAATATTCGATATGAAATTGAATTGTGTTGTATTGATGATTTT
13633328 TAATTGTTTTAATTCCGTAGCTAACGTCGTATCGGAATCCTCAACTAAAAAGGGGAAAGATAAAG
196 TAATTGTTTTAATTCCGTAGCTAACGTCGTATCGGAATCCTCAACTAAAAAGGGGAAAGATAAAG
13633393 TTGACATGGAATAGCTCAGATTTCTGGTTTGATAATTGATTGAATGAATTGAATTAGTAGATATA
261 TTGACATGGAATAGCTCAGATTTCTGGTTTGATAATTGATTGAATGAATTGAATTAGTAGATATA
13633458 TATACATTGAATGGATTGATTTTTGAATTGAAATGAATATATGTG
326 TATACATTGAATGGATTGATTTTTGAATTGAAATGAATATATGTG
13633503 AAATCAAAATTTAGGAATTTAAGTGAAAATAGGGAGTTAATTTTAGATTAAAGTAGAATTTGTAT
1 AAATCAAAATTTAGGAATTTAAGTGAAAATAGGGAGTTAATTTTAGATTAAAGTAGAATTTGTAT
13633568 GAAAATATAAGATTAATTGTGAAGAAATAAAATTAGTCTCGATTTAGGGACTAAATTGAAATTTA
66 GAAAATATAAGATTAATTGTGAAGAAATAAAATTAGTCTCGATTTAGGGACTAAATTGAAATTTA
13633633 GGCAATATTTGAGTAAAATTTGAAATATTCGATATGAAATTGAATTGTGTTGTATTGATGATTTT
131 GGCAATATTTGAGTAAAATTTGAAATATTCGATATGAAATTGAATTGTGTTGTATTGATGATTTT
13633698 TAATTGTTTTAATTCCGTAGCTAACGTCGTATCGGAATCCTCAACTAAAAAGGGGAAAGATAAAG
196 TAATTGTTTTAATTCCGTAGCTAACGTCGTATCGGAATCCTCAACTAAAAAGGGGAAAGATAAAG
13633763 TTGACATGGAATAGCTCAGATTTCTGGTTTGATAATTGATTGAATGAATTGAATTAGTAGATATA
261 TTGACATGGAATAGCTCAGATTTCTGGTTTGATAATTGATTGAATGAATTGAATTAGTAGATATA
13633828 TATACATTGAATGGATTGATTTTTGAATTGAAATGAATATATGTG
326 TATACATTGAATGGATTGATTTTTGAATTGAAATGAATATATGTG
13633873 TTATTATGTG
Statistics
Matches: 370, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
370 370 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.36
Consensus pattern (370 bp):
AAATCAAAATTTAGGAATTTAAGTGAAAATAGGGAGTTAATTTTAGATTAAAGTAGAATTTGTAT
GAAAATATAAGATTAATTGTGAAGAAATAAAATTAGTCTCGATTTAGGGACTAAATTGAAATTTA
GGCAATATTTGAGTAAAATTTGAAATATTCGATATGAAATTGAATTGTGTTGTATTGATGATTTT
TAATTGTTTTAATTCCGTAGCTAACGTCGTATCGGAATCCTCAACTAAAAAGGGGAAAGATAAAG
TTGACATGGAATAGCTCAGATTTCTGGTTTGATAATTGATTGAATGAATTGAATTAGTAGATATA
TATACATTGAATGGATTGATTTTTGAATTGAAATGAATATATGTG
Found at i:13641455 original size:41 final size:42
Alignment explanation
Indices: 13641410--13641519 Score: 152
Period size: 41 Copynumber: 2.7 Consensus size: 42
13641400 AATTTAAATA
* * * * *
13641410 AAAAAAATTAAATGCTATAAAAATGTTTATTTACATAA-TTT
1 AAAAATATTAATTACTATAAAAATATTAATTTACATAATTTT
*
13641451 AAAAATATTAATTATTATAAAAATATTAATTTACATAATTTT
1 AAAAATATTAATTACTATAAAAATATTAATTTACATAATTTT
13641493 AAAAATATTAATTACTATAAAAA-ATTA
1 AAAAATATTAATTACTATAAAAATATTA
13641520 TCAATATAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 36 0.59
42 25 0.41
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (42 bp):
AAAAATATTAATTACTATAAAAATATTAATTTACATAATTTT
Found at i:13641512 original size:24 final size:22
Alignment explanation
Indices: 13641440--13641512 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 22
13641430 AAATGTTTAT
13641440 TTACATAATTTAAAAATATTAA
1 TTACATAATTTAAAAATATTAA
*
13641462 TT--AT--TATAAAAATATTAA
1 TTACATAATTTAAAAATATTAA
13641480 TTTACATAATTTTAAAAATATTAA
1 -TTACATAA-TTTAAAAATATTAA
13641504 TTACTATAA
1 TTAC-ATAA
13641513 AAAATTATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
18 13 0.31
19 2 0.05
20 2 0.05
21 2 0.05
22 2 0.05
23 4 0.10
24 17 0.40
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
TTACATAATTTAAAAATATTAA
Found at i:13641515 original size:18 final size:18
Alignment explanation
Indices: 13641450--13641519 Score: 70
Period size: 18 Copynumber: 3.6 Consensus size: 18
13641440 TTACATAATT
*
13641450 TAAAAATATTAATTATTA
1 TAAAAATATTAATTACTA
13641468 TAAAAATATTAATTTACATAA
1 TAAAAATATTAA-TTAC-T-A
13641489 TTTTAAAAATATTAATTACTA
1 ---TAAAAATATTAATTACTA
13641510 TAAAAA-ATTA
1 TAAAAATATTA
13641520 TCAATATAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
17 4 0.09
18 18 0.40
19 3 0.07
20 1 0.02
21 2 0.04
22 1 0.02
23 4 0.09
24 12 0.27
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAAAATATTAATTACTA
Found at i:13642001 original size:20 final size:20
Alignment explanation
Indices: 13641971--13642009 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
13641961 ATCATCTAAA
13641971 TATTTTAATAT-AATTTTTT
1 TATTTTAATATAAATTTTTT
13641990 TATTTATAATATAAATTTTT
1 TATTT-TAATATAAATTTTT
13642010 GTTACAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTTTAATATAAATTTTTT
Found at i:13642008 original size:19 final size:19
Alignment explanation
Indices: 13641971--13642009 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
13641961 ATCATCTAAA
*
13641971 TATTTTAATATAATTTTTT
1 TATTTTAATATAATATTTT
13641990 TATTTATAATATAA-ATTTT
1 TATTT-TAATATAATATTTT
13642009 T
1 T
13642010 GTTACAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTTTAATATAATATTTT
Found at i:13649614 original size:29 final size:29
Alignment explanation
Indices: 13649582--13649638 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
13649572 TGAGTCTTGT
* *
13649582 GGTTTTAGTCTCCTTTTAATGAGCTGAAA
1 GGTTTCAGTCTCCCTTTAATGAGCTGAAA
*
13649611 GGTTTCAGTCTCCCTTTGATGAGCTGAA
1 GGTTTCAGTCTCCCTTTAATGAGCTGAA
13649639 CTATCAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.39
Consensus pattern (29 bp):
GGTTTCAGTCTCCCTTTAATGAGCTGAAA
Found at i:13653273 original size:15 final size:15
Alignment explanation
Indices: 13653248--13653282 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
13653238 GTATGATCAA
13653248 AAAAT-ATCTACTGT
1 AAAATAATCTACTGT
*
13653262 GAAATAATCTACTGT
1 AAAATAATCTACTGT
13653277 AAAATA
1 AAAATA
13653283 TAAGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (15 bp):
AAAATAATCTACTGT
Found at i:13654467 original size:13 final size:13
Alignment explanation
Indices: 13654449--13654473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13654439 TCCTAAGAAA
13654449 AATTAAGCAATTC
1 AATTAAGCAATTC
13654462 AATTAAGCAATT
1 AATTAAGCAATT
13654474 ATAAAAGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (13 bp):
AATTAAGCAATTC
Found at i:13663433 original size:16 final size:16
Alignment explanation
Indices: 13663414--13663459 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
13663404 ATAGATGTGC
13663414 AAATATATGTGTATAA
1 AAATATATGTGTATAA
**
13663430 AAAT-TATAGAATATAA
1 AAATATAT-GTGTATAA
13663446 AAA-ATATGTGTATA
1 AAATATATGTGTATA
13663460 TATATACGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (16 bp):
AAATATATGTGTATAA
Found at i:13680418 original size:69 final size:69
Alignment explanation
Indices: 13680302--13680439 Score: 172
Period size: 69 Copynumber: 2.0 Consensus size: 69
13680292 GTGAGTTTGT
* * * * * * *
13680302 CATTGATGCATTTAGTCTGCGTTTCAATCCAACGTATCTATAGTGTGTTGGGATTTTGTGAAATT
1 CATTGATGCATTTAGTCTACCTTCCAATCCAACATACCTATAGTGTGTTGAGATTTTGTGAAACT
13680367 TTTA
66 TTTA
*
13680371 CATTGATGCATTTAGGT-TACCTTCCGATCCAACATACCTAT-GATGTGTTGAGATTTTGTGAAA
1 CATTGATGCATTTA-GTCTACCTTCCAATCCAACATACCTATAG-TGTGTTGAGATTTTGTGAAA
13680434 CTTTTA
64 CTTTTA
13680440 TTTTTATTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
68 1 0.02
69 56 0.95
70 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (69 bp):
CATTGATGCATTTAGTCTACCTTCCAATCCAACATACCTATAGTGTGTTGAGATTTTGTGAAACT
TTTA
Found at i:13694636 original size:27 final size:26
Alignment explanation
Indices: 13694605--13694658 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
13694595 GCCTCGCCAA
13694605 TTTAACCTTAATTTTCTTTC-ACAATAT
1 TTTAACCTTAATTTT-TTTCTA-AATAT
*
13694632 TTTAACTTTAATTTTTTTCTAAATAT
1 TTTAACCTTAATTTTTTTCTAAATAT
13694658 T
1 T
13694659 GTGTTAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (26 bp):
TTTAACCTTAATTTTTTTCTAAATAT
Found at i:13695467 original size:13 final size:13
Alignment explanation
Indices: 13695451--13695480 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
13695441 TATAGAATTG
*
13695451 AAATTCCTCCTCT
1 AAATTCCTCATCT
13695464 AAATTCCTCATCT
1 AAATTCCTCATCT
13695477 AAAT
1 AAAT
13695481 ATACTCTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (13 bp):
AAATTCCTCATCT
Found at i:13697749 original size:2 final size:2
Alignment explanation
Indices: 13697742--13697767 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13697732 ATGATATTTA
13697742 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
13697768 TTTACATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13698429 original size:18 final size:19
Alignment explanation
Indices: 13698394--13698436 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
13698384 TTAAAAATTC
13698394 ATAAAAATTATCAAAAAA-
1 ATAAAAATTATCAAAAAAT
*
13698412 ATAAAAA-TATTAATAAAAT
1 ATAAAAATTATCAA-AAAAT
13698431 ATAAAA
1 ATAAAA
13698437 NNNNNNNNNN
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 5 0.23
18 11 0.50
19 6 0.27
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAAAAATTATCAAAAAAT
Found at i:13698668 original size:10 final size:10
Alignment explanation
Indices: 13698653--13698717 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 10
13698643 AAAAGCATAT
13698653 TAAAATTATA
1 TAAAATTATA
*
13698663 TAAAATCATAA
1 TAAAATTAT-A
*
13698674 AAAAATTATA
1 TAAAATTATA
*
13698684 -AAAAGTAT-
1 TAAAATTATA
13698692 TAAAATTGATA
1 TAAAATT-ATA
*
13698703 TAAACTTATA
1 TAAAATTATA
13698713 -AAAAT
1 TAAAAT
13698718 AAAAATAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
9 16 0.36
10 14 0.32
11 14 0.32
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (10 bp):
TAAAATTATA
Found at i:13698672 original size:21 final size:19
Alignment explanation
Indices: 13698635--13698717 Score: 60
Period size: 20 Copynumber: 4.2 Consensus size: 19
13698625 NNNNNNNNNT
*
13698635 AAATTTTAAAAAGCATATTA
1 AAATTATAAAAA-CATATTA
**
13698655 AAATTATATAAAATCATAAAA
1 AAATTATA-AAAA-CATATTA
*
13698676 AAATTATAAAAA-GTATTA
1 AAATTATAAAAACATATTA
* * *
13698694 AAATTGATATAAACTTATAA
1 AAATT-ATAAAAACATATTA
13698714 AAAT
1 AAAT
13698718 AAAAATAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
18 8 0.16
19 6 0.12
20 19 0.38
21 17 0.34
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (19 bp):
AAATTATAAAAACATATTA
Found at i:13698677 original size:20 final size:19
Alignment explanation
Indices: 13698654--13698736 Score: 62
Period size: 20 Copynumber: 4.2 Consensus size: 19
13698644 AAAGCATATT
13698654 AAAATTATATAAAATCATAAA
1 AAAATTATATAAAATCAT--A
*
13698675 AAAATTATA-AAAAGT-ATT
1 AAAATTATATAAAA-TCATA
* *
13698693 AAAATTGATATAAACTTATA
1 AAAATT-ATATAAAATCATA
* *
13698713 AAAATAAAAATAAAATCATA
1 AAAAT-TATATAAAATCATA
13698733 AAAA
1 AAAA
13698737 CTTGAAGTGG
Statistics
Matches: 50, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
18 6 0.12
19 4 0.08
20 30 0.60
21 10 0.20
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAATTATATAAAATCATA
Found at i:13714220 original size:28 final size:28
Alignment explanation
Indices: 13714180--13714805 Score: 1243
Period size: 28 Copynumber: 22.4 Consensus size: 28
13714170 TTTTGACATT
*
13714180 ATTTGATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714208 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714236 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714264 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714292 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714320 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714348 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714376 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714404 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714432 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714460 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714488 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714516 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714544 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714572 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714600 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714628 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714656 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714684 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714712 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714740 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714768 ATTTAATTAAAAACCCTAACCTAACTTA
1 ATTTAATTAAAAACCCTAACCTAACTTA
13714796 ATTTAATTAA
1 ATTTAATTAA
13714806 TCTAACTTAA
Statistics
Matches: 597, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 597 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.32
Consensus pattern (28 bp):
ATTTAATTAAAAACCCTAACCTAACTTA
Found at i:13716256 original size:124 final size:124
Alignment explanation
Indices: 13716034--13716300 Score: 358
Period size: 124 Copynumber: 2.1 Consensus size: 124
13716024 CCACGAGGGC
* *
13716034 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
1 GCGATTTGACACTATTTGCTCAGAAACATC-AAAAAAAATTATTTCCTACATGACCAACTGTACC
* *
13716099 GAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTACCCAATATAGCATCATTGTATCA
65 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTACCCAA-ATAGCATCATTGTATCA
* * *
13716160 GCGATTTTATACTATTTGCTCAGAAAACATC-AAAAAAATTATTTCTTACATGACC-ACTGTACC
1 GCGATTTGACACTATTTGCTCAG-AAACATCAAAAAAAATTATTTCCTACATGACCAACTGTACC
* * * * **
13716223 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
65 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTACCCAAATAGCATCATTGTATCA
**
13716283 GCGATTTCCCACTATTTG
1 GCGATTTGACACTATTTG
13716301 ACCAGATACG
Statistics
Matches: 124, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
123 28 0.23
124 46 0.37
125 23 0.19
126 21 0.17
127 6 0.05
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (124 bp):
GCGATTTGACACTATTTGCTCAGAAACATCAAAAAAAATTATTTCCTACATGACCAACTGTACCG
AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTACCCAAATAGCATCATTGTATCA
Found at i:13718305 original size:29 final size:29
Alignment explanation
Indices: 13718263--13718481 Score: 273
Period size: 29 Copynumber: 8.0 Consensus size: 29
13718253 CAGAAGTGTG
13718263 ATTAAGTTAGGTTAGGGTTAGGG-TTTT-
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
13718290 A--AA-TTAAGCTA-GGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
13718315 ATTAAGTTAGTTTAGGGTTAGAGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
13718344 ATTAAGTTAGGTTAGGGTTAGGATTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
13718373 ATTAAGTTAGGTT---G---GGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
13718396 ATTAAGTTAGGTTAGGGTTAGGGTTTTCA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
13718425 ATTAAGTTAGTTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
13718454 ATTAAGTTAGTTTACGGTTAGGGTTTTT
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTT
13718482 TAGTAAATTA
Statistics
Matches: 166, Mismatches: 14, Indels: 22
0.82 0.07 0.11
Matches are distributed among these distances:
23 29 0.17
24 10 0.06
25 3 0.02
26 2 0.01
27 3 0.02
28 5 0.03
29 114 0.69
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (29 bp):
ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
Found at i:13718308 original size:23 final size:23
Alignment explanation
Indices: 13718278--13718333 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
13718268 GTTAGGTTAG
13718278 GGTTAGGGTTTTAAATTAAGCTA
1 GGTTAGGGTTTTAAATTAAGCTA
* *
13718301 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTAAATTAAGCTA
*
13718324 GTTTAGGGTT
1 GGTTAGGGTT
13718334 AGAGTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.25, C:0.02, G:0.29, T:0.45
Consensus pattern (23 bp):
GGTTAGGGTTTTAAATTAAGCTA
Found at i:13718363 original size:58 final size:57
Alignment explanation
Indices: 13718263--13718481 Score: 269
Period size: 52 Copynumber: 4.0 Consensus size: 57
13718253 CAGAAGTGTG
* * * *
13718263 ATTAAGTTAGGTTAGGGTTAGGGTTTT-A--AA-TTAAGCTA-GGTTAGGGTTTTTA
1 ATTAAGTTAGTTTAGGGTTAGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
13718315 ATTAAGTTAGTTTAGGGTTAGAGTTTTTAATTAAGTTAGGTTAGGGTTAGGATTTTTA
1 ATTAAGTTAGTTTAGGGTTAG-GTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
13718373 ATTAAGTTAGGTT--GG---GGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTCA
1 ATTAAGTTAGTTTAGGGTTAGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
13718425 ATTAAGTTAGTTTAGGGTTAGGGTTTTTAATTAAGTTAGTTTACGGTTAGGGTTTTT
1 ATTAAGTTAGTTTAGGGTTA-GGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTT
13718482 TAGTAAATTA
Statistics
Matches: 143, Mismatches: 12, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
52 66 0.46
53 6 0.04
54 3 0.02
56 4 0.03
57 6 0.04
58 58 0.41
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (57 bp):
ATTAAGTTAGTTTAGGGTTAGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTA
Found at i:13718460 original size:81 final size:81
Alignment explanation
Indices: 13718263--13718472 Score: 330
Period size: 81 Copynumber: 2.6 Consensus size: 81
13718253 CAGAAGTGTG
* * *
13718263 ATTAAGTTAGGTTAGGGTTAGGGTTTTAAATTAAGCTAGGTTAGGGTTTTTAATTAAGTTAGTTT
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTAAGTTAGGTT
*
13718328 AGGGTTAGAGTTTTTA
66 AGGGTTAGAGTTTTCA
* *
13718344 ATTAAGTTAGGTTAGGGTTAGGATTTTTAATTAAGTTAGGTTGGGGTTTTTAATTAAGTTAGGTT
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTAAGTTAGGTT
*
13718409 AGGGTTAGGGTTTTCA
66 AGGGTTAGAGTTTTCA
* * *
13718425 ATTAAGTTAGTTTAGGGTTAGGGTTTTTAATTAAGTTAGTTTACGGTT
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTT
13718473 AGGGTTTTTT
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 117 1.00
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (81 bp):
ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTAAGTTAGGTT
AGGGTTAGAGTTTTCA
Found at i:13718987 original size:18 final size:18
Alignment explanation
Indices: 13718960--13718994 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13718950 CGGCAAAGTA
* *
13718960 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
13718978 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
13718995 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:13719655 original size:7 final size:7
Alignment explanation
Indices: 13719645--13719669 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13719635 TTATATACAT
13719645 AATACTA
1 AATACTA
13719652 AATACTA
1 AATACTA
13719659 AATACTA
1 AATACTA
13719666 AATA
1 AATA
13719670 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:13719861 original size:20 final size:20
Alignment explanation
Indices: 13719836--13719874 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13719826 CTAGCTTGAA
13719836 CAAAATCT-ATATAATAATTC
1 CAAAATCTAATATAA-AATTC
*
13719856 CAAAATGTAATATAAAATT
1 CAAAATCTAATATAAAATT
13719875 TACCTCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (20 bp):
CAAAATCTAATATAAAATTC
Found at i:13720704 original size:30 final size:30
Alignment explanation
Indices: 13720669--13720733 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
13720659 GCCATTGATG
*
13720669 AAAATATAAAAAAATTTAAAATTATTTTTA
1 AAAATATAAAAAAATTTAAAATTATTTTAA
*
13720699 AAAATATAAAAAATTTTAAAATTATTTTAA
1 AAAATATAAAAAAATTTAAAATTATTTTAA
13720729 AAAAT
1 AAAAT
13720734 GAAATTGAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (30 bp):
AAAATATAAAAAAATTTAAAATTATTTTAA
Found at i:13720789 original size:51 final size:51
Alignment explanation
Indices: 13720734--13720846 Score: 190
Period size: 51 Copynumber: 2.2 Consensus size: 51
13720724 TTTAAAAAAT
*
13720734 GAAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAG
* * *
13720785 GAAATTGAGAGGAAATTGAAATTAAATATGGGTTTTAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAG
13720836 GAAATTGAGAG
1 GAAATTGAGAG
13720847 AATTTTGGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.42, C:0.01, G:0.28, T:0.29
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTCGAAG
Found at i:13720864 original size:22 final size:22
Alignment explanation
Indices: 13720821--13720868 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
13720811 TATGGGTTTT
*
13720821 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGAAAATTG
13720843 AGAGAATTTTGGAA-AAAGATTG
1 AGAGAATTTTGGAAGAAA-ATTG
13720865 AGAG
1 AGAG
13720869 GATTAGAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.25
Consensus pattern (22 bp):
AGAGAATTTTGGAAGAAAATTG
Found at i:13722300 original size:114 final size:114
Alignment explanation
Indices: 13721621--13722293 Score: 1041
Period size: 114 Copynumber: 5.9 Consensus size: 114
13721611 AAAATAAGCA
*
13721621 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTTC-GCCCAACGACGCCGTTGTCTGAGCT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATAC-TTCAGCCCAACGACGCCGTTTTCTGAGCT
* * **
13721685 GAGAAGAATTTAATGGCGTTTTTATGTAAGCGCCGCTGCTGGTCAGGTCT
65 GAGAAGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTAATGGTCAGGTCT
*
13721735 TTAGCGGCGTTTTTGGGAAAGCGCCGC-AAAATACTTCAGCCCAACGACGCCGTTTACTGAGCTG
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGCCGTTTTCTGAGCTG
* * *
13721799 AGAAGGATTTAATGGCGTTTTTCTGTAAGCGTCGCTACA-GGTCAGGTCT
66 AGAAGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTA-ATGGTCAGGTCT
* *
13721848 TTAGCGGCGTTTTTGGGAAAGCACCGCAAAAATACTTCAGCCCAACGACGCTGTTTTCTGAGCTG
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGCCGTTTTCTGAGCTG
*
13721913 AGAAGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTAATGTTCAGGTCT
66 AGAAGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTAATGGTCAGGTCT
* *
13721962 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTTAGCCTAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGCCGTTTTCTGAGC-T
** *
13722027 TCG-AGGATTTAGTGGCGTTTTTATGTAACCGCCGCTAATGGTCAGGTCT
65 GAGAAGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTAATGGTCAGGTCT
* * *
13722076 TTAGCGGTGTTTTTGGGAAAGCGTCGCAAAAATACTTCAGCCCAACGACGCCATTTTCTGAGCTG
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGCCGTTTTCTGAGCTG
13722141 AGAAGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTAATGGTCAGGTCT
66 AGAAGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTAATGGTCAGGTCT
* * * *
13722190 TTAGCGGCGTTTTTGGTAAAGCGCCACAAAAATACTTCAGCCCATCGACGCCGTTTTTTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGCCGTTTTCTGAGC-T
**
13722255 TCG-AGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTAAT
65 GAGAAGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTAAT
13722294 ACTCAGGGAT
Statistics
Matches: 513, Mismatches: 39, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
112 3 0.01
113 103 0.20
114 403 0.79
115 4 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGCCGTTTTCTGAGCTG
AGAAGGATTTAGTGGCGTTTTTATGTAAGCGCCGCTAATGGTCAGGTCT
Found at i:13722825 original size:21 final size:21
Alignment explanation
Indices: 13722772--13722825 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
13722762 TAAAGATTAT
13722772 TAATTTAAAA-TTGATATGCAA
1 TAATTTAAAATTTGATAT-CAA
*
13722793 T-ATATAATAATTTGAATAT-AA
1 TAATTTAA-AATTTG-ATATCAA
13722814 TAATTTAAAATT
1 TAATTTAAAATT
13722826 GTAAAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.19
21 10 0.37
22 8 0.30
23 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (21 bp):
TAATTTAAAATTTGATATCAA
Found at i:13722834 original size:9 final size:9
Alignment explanation
Indices: 13722820--13722862 Score: 61
Period size: 9 Copynumber: 4.7 Consensus size: 9
13722810 ATAATAATTT
13722820 AAAATTGTA
1 AAAATTGTA
13722829 AAAATTGT-
1 AAAATTGTA
13722837 AAAATTGTAAA
1 AAAATTGT--A
13722848 AAAATTGTA
1 AAAATTGTA
13722857 AAAATT
1 AAAATT
13722863 ACAAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.26
9 15 0.48
11 8 0.26
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (9 bp):
AAAATTGTA
Found at i:13722841 original size:17 final size:18
Alignment explanation
Indices: 13722815--13722859 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
13722805 TGAATATAAT
13722815 AATT-TAAAATTGT-AAA
1 AATTGTAAAATTGTAAAA
13722831 AATTGTAAAATTGTAAAAA
1 AATTGTAAAATTGT-AAAA
13722850 AATTGTAAAA
1 AATTGTAAAA
13722860 ATTACAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 9 0.35
19 13 0.50
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (18 bp):
AATTGTAAAATTGTAAAA
Found at i:13722859 original size:8 final size:8
Alignment explanation
Indices: 13722815--13722848 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
13722805 TGAATATAAT
13722815 AATT-TAA
1 AATTGTAA
13722822 AATTGTAAA
1 AATTGT-AA
13722831 AATTGTAA
1 AATTGTAA
13722839 AATTGTAA
1 AATTGTAA
13722847 AA
1 AA
13722849 AAATTGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 4 0.16
8 13 0.52
9 8 0.32
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (8 bp):
AATTGTAA
Found at i:13722868 original size:19 final size:19
Alignment explanation
Indices: 13722828--13722870 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
13722818 TTAAAATTGT
*
13722828 AAAAATTGTAAAATTGTAA
1 AAAAATTGTAAAAATGTAA
13722847 AAAAATTGTAAAAAT-TACA
1 AAAAATTGTAAAAATGTA-A
13722866 AAAAA
1 AAAAA
13722871 AATTAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (19 bp):
AAAAATTGTAAAAATGTAA
Found at i:13722888 original size:11 final size:11
Alignment explanation
Indices: 13722856--13722902 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
13722846 AAAAAATTGT
13722856 AAAAATTACAAA
1 AAAAATTA-AAA
13722868 AAAAATTAAAA
1 AAAAATTAAAA
13722879 TAAAAA-TAAAA
1 -AAAAATTAAAA
13722890 AAGAAA-TAAAA
1 AA-AAATTAAAA
13722901 AA
1 AA
13722903 CTAAAATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
10 2 0.06
11 18 0.55
12 13 0.39
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (11 bp):
AAAAATTAAAA
Found at i:13722948 original size:47 final size:47
Alignment explanation
Indices: 13722896--13722993 Score: 126
Period size: 47 Copynumber: 2.1 Consensus size: 47
13722886 AAAAAAGAAA
** * *
13722896 TAAAAAACTAAAATTTTTATTTTTACCTAA-TTTTTATAAATATTACT
1 TAAAAAACTAAAATTGATAATTTTACCTAATTTTTTA-AAATATTACC
* *
13722943 TAAAAAACTGAAATTGATAATTTTATCTAATTTTTTAAAATATTACC
1 TAAAAAACTAAAATTGATAATTTTACCTAATTTTTTAAAATATTACC
13722990 TAAA
1 TAAA
13722994 TTAACAAAAC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
47 38 0.86
48 6 0.14
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (47 bp):
TAAAAAACTAAAATTGATAATTTTACCTAATTTTTTAAAATATTACC
Found at i:13724226 original size:6 final size:6
Alignment explanation
Indices: 13724215--13724243 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
13724205 AAAATTTATA
13724215 TATATG TATATG TATATG TATATG TATAT
1 TATATG TATATG TATATG TATATG TATAT
13724244 ACAGAATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:13724360 original size:6 final size:6
Alignment explanation
Indices: 13724349--13724425 Score: 100
Period size: 6 Copynumber: 12.8 Consensus size: 6
13724339 AATTAGGTTT
* *
13724349 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG CGTGTG CGTGTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * *
13724397 CGTGTG CGTGTG CGTGTG CGTGTG TGTGT
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGT
13724426 TTTTAAAATA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 67 1.00
ACGTcount: A:0.00, C:0.08, G:0.49, T:0.43
Consensus pattern (6 bp):
TGTGTG
Found at i:13724370 original size:18 final size:18
Alignment explanation
Indices: 13724349--13724425 Score: 118
Period size: 18 Copynumber: 4.3 Consensus size: 18
13724339 AATTAGGTTT
*
13724349 TGTGTGTGTGTGTGTGTG
1 TGTGTGTGTGTGCGTGTG
13724367 TGTGTGTGTGTGCGTGTG
1 TGTGTGTGTGTGCGTGTG
*
13724385 CGTGTGTGTGTGCGTGTG
1 TGTGTGTGTGTGCGTGTG
* *
13724403 CGTGTGCGTGTGCGTGTG
1 TGTGTGTGTGTGCGTGTG
13724421 TGTGT
1 TGTGT
13724426 TTTTAAAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 55 1.00
ACGTcount: A:0.00, C:0.08, G:0.49, T:0.43
Consensus pattern (18 bp):
TGTGTGTGTGTGCGTGTG
Found at i:13724750 original size:7 final size:7
Alignment explanation
Indices: 13724738--13724817 Score: 106
Period size: 7 Copynumber: 11.3 Consensus size: 7
13724728 TGTTTCTTTA
13724738 TTTTCTG
1 TTTTCTG
13724745 TTTTCTG
1 TTTTCTG
13724752 TTTTCTG
1 TTTTCTG
13724759 TTTTCTG
1 TTTTCTG
**
13724766 CATTCTG
1 TTTTCTG
13724773 TTTTCTG
1 TTTTCTG
*
13724780 TTTTCTA
1 TTTTCTG
*
13724787 TTTTTTG
1 TTTTCTG
13724794 TTTTCTG
1 TTTTCTG
*
13724801 TTTTGCTA
1 TTTT-CTG
13724809 TTTTCTG
1 TTTTCTG
13724816 TT
1 TT
13724818 GAATGAAGTG
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
7 56 0.90
8 6 0.10
ACGTcount: A:0.04, C:0.14, G:0.12, T:0.70
Consensus pattern (7 bp):
TTTTCTG
Found at i:13730350 original size:21 final size:21
Alignment explanation
Indices: 13730324--13730374 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
13730314 CTACAATTTA
*
13730324 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
*
13730345 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
13730366 AAGCAGAGG
1 AAGCAGAGG
13730375 TTCAAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.47, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:13730802 original size:42 final size:42
Alignment explanation
Indices: 13730755--13730882 Score: 184
Period size: 42 Copynumber: 3.0 Consensus size: 42
13730745 GTTTTTGTAT
* * *
13730755 AAAAACACCGCTAAAGAACATTTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
*
13730797 AAAAACGCCGCTAGAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
** * *
13730839 AGTAACGTCGCTAACGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
13730881 AA
1 AA
13730883 TGCTTAATAA
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
Found at i:13731882 original size:19 final size:19
Alignment explanation
Indices: 13731850--13731886 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13731840 TTAATAATTT
*
13731850 TTTTAGAATGTTTATAAGC
1 TTTTAGAATATTTATAAGC
*
13731869 TTTTATAATATTTATAAG
1 TTTTAGAATATTTATAAG
13731887 TTGTTATGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.11, T:0.51
Consensus pattern (19 bp):
TTTTAGAATATTTATAAGC
Found at i:13732353 original size:17 final size:18
Alignment explanation
Indices: 13732316--13732353 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
13732306 GTATATATAA
13732316 AATTACATATTAAATTAT
1 AATTACATATTAAATTAT
13732334 AATT-CATATATAAATT-T
1 AATTACATAT-TAAATTAT
13732351 AAT
1 AAT
13732354 ATTTATTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTACATATTAAATTAT
Found at i:13733156 original size:37 final size:37
Alignment explanation
Indices: 13733107--13733181 Score: 134
Period size: 37 Copynumber: 2.0 Consensus size: 37
13733097 GAAAATAAAC
13733107 TAAATTTTTGATGTGTTTGGATTTTTTAAAGAAAATTT
1 TAAATTTTTGATGTGTTTGGATTTTTTAAAG-AAATTT
13733145 TAAA-TTTTGATGTGTTTGGATTTTTTAAAGAAATTT
1 TAAATTTTTGATGTGTTTGGATTTTTTAAAGAAATTT
13733181 T
1 T
13733182 GTATAATGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 7 0.19
37 26 0.70
38 4 0.11
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (37 bp):
TAAATTTTTGATGTGTTTGGATTTTTTAAAGAAATTT
Found at i:13742429 original size:152 final size:155
Alignment explanation
Indices: 13741872--13742497 Score: 897
Period size: 155 Copynumber: 4.1 Consensus size: 155
13741862 TTCGTGTTTT
* * * * * *
13741872 GGCCCTTTATTCGTA-TTTTTT-CCTGGATTTTATTACTTTTAAAAACTATACTA-TTT-T--TT
1 GGCCTTTTGTTCGTATTTTTTTCCCTAGAGTTTATTACTTTAAAAAAATATACTATTTTCTAATT
13741931 TTATT-TTTT--ATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTATTTTTTAAAT
66 TTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTATTTTTTAAAT
13741993 AAATTTTAAAAAGAACCCTTATTTC
131 AAATTTTAAAAAGAACCCTTATTTC
*
13742018 GGCCTTTTGTTTGTATTTTTTTCCCTAGAGTTTATTACTTTAAAAAAATATACTATTTTCTAATT
1 GGCCTTTTGTTCGTATTTTTTTCCCTAGAGTTTATTACTTTAAAAAAATATACTATTTTCTAATT
* * * *
13742083 TTATTATTTTACATTATTTTAGTACATCATGTTTGAAATGTATTAATTGACCGTATTTTTTAAAT
66 TTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTATTTTTTAAAT
13742148 AAATTTTAAAAAGAACCCTTATTTC
131 AAATTTTAAAAAGAACCCTTATTTC
*
13742173 GGCCTTTTGTTTGTATTTTTTTCCCTAGAGTTTATTACTTTAAAAAAATATACTATTTTCTAATT
1 GGCCTTTTGTTCGTATTTTTTTCCCTAGAGTTTATTACTTTAAAAAAATATACTATTTTCTAATT
* *
13742238 TTATTATTTTACATTATTTTAGTACATTATGTTTAAAATGTATTAATTTACTGTATTTTTTAAAT
66 TTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTATTTTTTAAAT
*
13742303 AAATTTTTAAAA-AACCCTTATTTC
131 AAATTTTAAAAAGAACCCTTATTTC
* * * * *
13742327 GACCCTTTGTTCGTA-TTTTTTCCCCAGAATTTATTACTTCAAAAAAA-ATACTATTTTCTAATT
1 GGCCTTTTGTTCGTATTTTTTTCCCTAGAGTTTATTACTTTAAAAAAATATACTATTTTCTAATT
* * **
13742390 TTATTATTTTATATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGCTTTTTAAAT
66 TTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTATTTTTTAAAT
* *
13742455 AAA--TT-AAAA-AATCATTATTTC
131 AAATTTTAAAAAGAACCCTTATTTC
*
13742476 GGCCATTTGTTCGTATTTTTTT
1 GGCCTTTTGTTCGTATTTTTTT
13742498 TATTTACCAA
Statistics
Matches: 438, Mismatches: 32, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
146 12 0.03
147 6 0.01
148 28 0.06
149 30 0.07
150 9 0.02
152 85 0.19
153 33 0.08
154 24 0.05
155 211 0.48
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.51
Consensus pattern (155 bp):
GGCCTTTTGTTCGTATTTTTTTCCCTAGAGTTTATTACTTTAAAAAAATATACTATTTTCTAATT
TTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTATTTTTTAAAT
AAATTTTAAAAAGAACCCTTATTTC
Found at i:13742611 original size:27 final size:27
Alignment explanation
Indices: 13742570--13742649 Score: 133
Period size: 27 Copynumber: 3.0 Consensus size: 27
13742560 ACTCCCTGGG
*
13742570 ACAAGGGAACACTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
13742597 ACAAGGGAACCCTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
**
13742624 ACAAGGGTTCCCTGTTGGCGGCACCA
1 ACAAGGGAACCCTGTTGGCGGCACCA
13742650 CTCGTGTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.28, C:0.29, G:0.30, T:0.14
Consensus pattern (27 bp):
ACAAGGGAACCCTGTTGGCGGCACCAA
Found at i:13746973 original size:3 final size:3
Alignment explanation
Indices: 13746965--13747014 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
13746955 NCTAACATCT
13746965 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13747013 TA
1 TA
13747015 CTATAAAATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:13747369 original size:27 final size:27
Alignment explanation
Indices: 13747296--13747375 Score: 133
Period size: 27 Copynumber: 3.0 Consensus size: 27
13747286 ATAACACGAG
**
13747296 TGGTGCCGCCAACAGGGAACCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
13747323 TGGTGCCGCCAACAGGGTTCCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
*
13747350 TGGTGCCGCCAACAGTGTTCCCTTGT
1 TGGTGCCGCCAACAGGGTTCCCTTGT
13747376 CCCAGAGAGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.14, C:0.30, G:0.29, T:0.28
Consensus pattern (27 bp):
TGGTGCCGCCAACAGGGTTCCCTTGTT
Found at i:13747494 original size:26 final size:27
Alignment explanation
Indices: 13747437--13747499 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
13747427 TTTTTGTTAT
*
13747437 ATTTTGGTAAATAAAAAAATTATATAT
1 ATTTTGGTAAATAAAAAAATTATATAC
*
13747464 TTTTTGGTAAATAAAAAAATTATA-AC
1 ATTTTGGTAAATAAAAAAATTATATAC
13747490 ATTTTGGTAA
1 ATTTTGGTAA
13747500 TTTTTAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 10 0.30
27 23 0.70
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.41
Consensus pattern (27 bp):
ATTTTGGTAAATAAAAAAATTATATAC
Found at i:13748627 original size:20 final size:20
Alignment explanation
Indices: 13748602--13748639 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13748592 CGTAAAATGA
*
13748602 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
13748622 TTTCTGTAAAATGATTTA
1 TTTCTGGAAAATGATTTA
13748640 TTGGAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:13748631 original size:34 final size:34
Alignment explanation
Indices: 13748588--13748653 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
13748578 AGTAAAATAT
*
13748588 TTTTCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCGTAAAATGATTTACTGGAAAATATTTTAC
*
13748621 TTTTCTGTAAAATGATTTATTGGAAAATATTTT
1 TTTTC-GTAAAATGATTTACTGGAAAATATTTT
13748654 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.41
35 12 0.41
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (34 bp):
TTTTCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:13749754 original size:13 final size:14
Alignment explanation
Indices: 13749722--13749756 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
13749712 TGCTTTAATG
*
13749722 TATTTCTAATATTA
1 TATTTTTAATATTA
13749736 TATTTTTAATATT-
1 TATTTTTAATATTA
13749749 TATTTTTA
1 TATTTTTA
13749757 TATAAAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (14 bp):
TATTTTTAATATTA
Found at i:13759656 original size:15 final size:14
Alignment explanation
Indices: 13759634--13759669 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
13759624 ATAATCCTTA
*
13759634 ATAATTATCTTAAT
1 ATAATTATCATAAT
13759648 ATCAATTATCATAAT
1 AT-AATTATCATAAT
13759663 ATAATTA
1 ATAATTA
13759670 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAATTATCATAAT
Found at i:13761819 original size:3 final size:3
Alignment explanation
Indices: 13761811--13761844 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
13761801 CATATCATTG
13761811 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
13761845 TTTTACATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:13771205 original size:3 final size:3
Alignment explanation
Indices: 13771197--13771232 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
13771187 TCATGTTTAG
13771197 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
13771233 AATTTTGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:13787402 original size:1 final size:1
Alignment explanation
Indices: 13787396--13787421 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
13787386 GGTTCCACAG
13787396 CCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCC
13787422 AAACACAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:13787483 original size:1 final size:1
Alignment explanation
Indices: 13787477--13787502 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
13787467 NNAATGTGGG
13787477 CCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCC
13787503 AACAACAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:13795979 original size:30 final size:30
Alignment explanation
Indices: 13795945--13796101 Score: 108
Period size: 30 Copynumber: 5.3 Consensus size: 30
13795935 CGACTAATGG
*
13795945 AAAGGGATAGCTTCGGCTATCAAATTATGA
1 AAAGGGATAGCTTCGACTATCAAATTATGA
* * *
13795975 AAAGGGAT-G-GT-GACTACCATCAATAATGA
1 AAAGGGATAGCTTCGACTATCA--AATTATGA
* * * * * **
13796004 AAAAGGAT-GGTGACGATTATCGAACAATGA
1 AAAGGGATAGCT-TCGACTATCAAATTATGA
* *
13796034 AAAGGGATAGATAT-GACTATCGAATTATGA
1 AAAGGGATAGCT-TCGACTATCAAATTATGA
* *
13796064 AAAGGGATAACTTCGGCTATCAAATTATGA
1 AAAGGGATAGCTTCGACTATCAAATTATGA
13796094 AAAGGGAT
1 AAAGGGAT
13796102 GGTGACGACC
Statistics
Matches: 98, Mismatches: 22, Indels: 14
0.73 0.16 0.10
Matches are distributed among these distances:
27 6 0.06
28 1 0.01
29 17 0.17
30 67 0.68
31 2 0.02
32 5 0.05
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.24
Consensus pattern (30 bp):
AAAGGGATAGCTTCGACTATCAAATTATGA
Found at i:13796116 original size:30 final size:30
Alignment explanation
Indices: 13795961--13796143 Score: 133
Period size: 30 Copynumber: 6.2 Consensus size: 30
13795951 ATAGCTTCGG
*
13795961 CTATCAAATTATGAAAAGGGATGGTGACTA
1 CTATCAAATTATGAAAAGGGATGGTGACGA
* * *
13795991 CCATC-AATAATGAAAAAGGATGGTGACGA
1 CTATCAAATTATGAAAAGGGATGGTGACGA
* * ** * *
13796020 TTATCGAACAATGAAAAGGGATAGAT-ATGA
1 CTATCAAATTATGAAAAGGGAT-GGTGACGA
* ** * *
13796050 CTATCGAATTATGAAAAGGGATAACT-TCGG
1 CTATCAAATTATGAAAAGGGAT-GGTGACGA
13796080 CTATCAAATTATGAAAAGGGATGGTGACGA
1 CTATCAAATTATGAAAAGGGATGGTGACGA
* * * *
13796110 CCATCAACA--ATGGAAATGAATGGTGACGA
1 CTATCAA-ATTATGAAAAGGGATGGTGACGA
13796139 CTATC
1 CTATC
13796144 GGACAATGAA
Statistics
Matches: 121, Mismatches: 28, Indels: 9
0.77 0.18 0.06
Matches are distributed among these distances:
29 46 0.38
30 72 0.60
31 3 0.02
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (30 bp):
CTATCAAATTATGAAAAGGGATGGTGACGA
Found at i:13796144 original size:119 final size:119
Alignment explanation
Indices: 13795945--13796162 Score: 355
Period size: 119 Copynumber: 1.8 Consensus size: 119
13795935 CGACTAATGG
* * * *
13795945 AAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGATGGTGACTACCATCAATAATGAAAAAGG
1 AAAGGGATAACTTCGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAAAAGA
* *
13796010 ATGGTGACGATTATCGAACAATGAAAAGGGATAGATATGACTATCGAATTATGA
66 ATGGTGACGACTATCGAACAATGAAAAAGGATAGATATGACTATCGAATTATGA
* *
13796064 AAAGGGATAACTTCGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGGAAATGA
1 AAAGGGATAACTTCGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAAAAGA
*
13796129 ATGGTGACGACTATCGGACAATGAAAAAGGATAG
66 ATGGTGACGACTATCGAACAATGAAAAAGGATAG
13796163 CTTCGGTTAT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
119 90 1.00
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (119 bp):
AAAGGGATAACTTCGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAAAAGA
ATGGTGACGACTATCGAACAATGAAAAAGGATAGATATGACTATCGAATTATGA
Found at i:13798421 original size:33 final size:33
Alignment explanation
Indices: 13798379--13798444 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
13798369 TCAAGTGGTT
13798379 GACACTAGTCAGGTGATCGTGTTAGAAAACAAA
1 GACACTAGTCAGGTGATCGTGTTAGAAAACAAA
13798412 GACACTAGTCAGGTGATCGTGTTAGAAAACAAA
1 GACACTAGTCAGGTGATCGTGTTAGAAAACAAA
13798445 CCACCAACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (33 bp):
GACACTAGTCAGGTGATCGTGTTAGAAAACAAA
Found at i:13807168 original size:41 final size:41
Alignment explanation
Indices: 13807103--13807572 Score: 626
Period size: 41 Copynumber: 11.5 Consensus size: 41
13807093 TTTTTAAACC
*
13807103 TTTAGCGGCGTTTTTACCTAAGCGCCGCTAATGCTCGGATA
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATA
* * **
13807144 TTTAGCGGCGTTTTTATCTGAGCGCCGCTAATTCTCTGG-CC
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GGATA
*
13807185 TTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATA
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATA
* * **
13807226 TTTAGCGGCGTTTTTATCTGAGCGCCGCTAATTCTCTGG-CC
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GGATA
*
13807267 TTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATA
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATA
* * **
13807308 TTTAGCGGCGTTTTTATCTGAGCGCCGCTAATTCTCTGG-CC
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GGATA
*
13807349 TTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATA
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATA
* * **
13807390 TTTAGCGGCGTTTTTATCTGAGCGCCGCTAATTCTCTGG-CC
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GGATA
*
13807431 TTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATA
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATA
* * **
13807472 TTTAGCGGCGTTTTTATCTGAGCGCCGCTAATTCTCTGG-CC
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GGATA
*
13807513 TTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATA
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATA
13807554 TTTAGCGGCGTTTTTATCT
1 TTTAGCGGCGTTTTTATCT
13807573 TCAAAGGAAT
Statistics
Matches: 369, Mismatches: 50, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
40 10 0.03
41 349 0.95
42 10 0.03
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATA
Found at i:13807238 original size:82 final size:82
Alignment explanation
Indices: 13807101--13807572 Score: 926
Period size: 82 Copynumber: 5.8 Consensus size: 82
13807091 GATTTTTAAA
* *
13807101 CCTTTAGCGGCGTTTTTACCTAAGCGCCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
1 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
13807166 CGCCGCTAATTCTCTGG
66 CGCCGCTAATTCTCTGG
13807183 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
1 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
13807248 CGCCGCTAATTCTCTGG
66 CGCCGCTAATTCTCTGG
13807265 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
1 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
13807330 CGCCGCTAATTCTCTGG
66 CGCCGCTAATTCTCTGG
13807347 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
1 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
13807412 CGCCGCTAATTCTCTGG
66 CGCCGCTAATTCTCTGG
13807429 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
1 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
13807494 CGCCGCTAATTCTCTGG
66 CGCCGCTAATTCTCTGG
13807511 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCT
1 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCT
13807573 TCAAAGGAAT
Statistics
Matches: 388, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 388 1.00
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (82 bp):
CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAG
CGCCGCTAATTCTCTGG
Found at i:13814188 original size:85 final size:86
Alignment explanation
Indices: 13814099--13814308 Score: 279
Period size: 85 Copynumber: 2.5 Consensus size: 86
13814089 GTTTGTGAAA
* *
13814099 TAAGCGCCGCTAAAGAACACT-A-CTATTAGCGGC-TTTTTTGACCAAGCGCCGCTATAGAACAT
1 TAAGCGCCGCTAAAGAACA-TAATCTATTAGCGGCGTTTTTTCA-CAAGCGCCGCTAAAGAACAT
* *
13814161 TA-CTTTTAGCGGCGTTTTTTTCC
64 GATC-TTTAGCGGCGTTTATTTCC
*
13814184 TAAGCGCCGCTAAAGAACATAATCTA-TAGCGGCGTTTTTTCATAAGCGCCGCTAAAGAACATGA
1 TAAGCGCCGCTAAAGAACATAATCTATTAGCGGCGTTTTTTCACAAGCGCCGCTAAAGAACATGA
13814248 TCTTTAGCGGCGTTTATTTCC
66 TCTTTAGCGGCGTTTATTTCC
* * *
13814269 TTAGCGCCACTAAAGAACATGATCT-TTAGCGGCGTTTTTT
1 TAAGCGCCGCTAAAGAACATAATCTATTAGCGGCGTTTTTT
13814309 TTGTAAGCGC
Statistics
Matches: 112, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
84 1 0.01
85 100 0.89
86 11 0.10
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (86 bp):
TAAGCGCCGCTAAAGAACATAATCTATTAGCGGCGTTTTTTCACAAGCGCCGCTAAAGAACATGA
TCTTTAGCGGCGTTTATTTCC
Found at i:13814193 original size:43 final size:43
Alignment explanation
Indices: 13814099--13814326 Score: 268
Period size: 43 Copynumber: 5.3 Consensus size: 43
13814089 GTTTGTGAAA
* *
13814099 TAAGCGCCGCTAAAGAACACTA-CTATTAGCGGC-TTTTTTGACC
1 TAAGCGCCGCTAAAGAACATTATCT-TTAGCGGCGTTTTTT-TCC
*
13814142 -AAGCGCCGCTATAGAACATTA-CTTTTAGCGGCGTTTTTTTCC
1 TAAGCGCCGCTAAAGAACATTATC-TTTAGCGGCGTTTTTTTCC
* * *
13814184 TAAGCGCCGCTAAAGAACATAATCTATAGCGGCG-TTTTTTCA
1 TAAGCGCCGCTAAAGAACATTATCTTTAGCGGCGTTTTTTTCC
* *
13814226 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCC
1 TAAGCGCCGCTAAAGAACATTATCTTTAGCGGCGTTTTTTTCC
* * * **
13814269 TTAGCGCCACTAAAGAACATGATCTTTAGCGGCGTTTTTTTTG
1 TAAGCGCCGCTAAAGAACATTATCTTTAGCGGCGTTTTTTTCC
*
13814312 TAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
13814327 TTAGCGACGT
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
42 69 0.43
43 91 0.57
44 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
TAAGCGCCGCTAAAGAACATTATCTTTAGCGGCGTTTTTTTCC
Found at i:13821997 original size:31 final size:29
Alignment explanation
Indices: 13821927--13822000 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
13821917 GGCTTAGGTT
* *
13821927 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* **
13821956 ACGTTTTAGTCACTTATGTTATCACGTTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
13821987 ACATTTTAGTCACT
1 ACATTTTAGTCACT
13822001 GAGCCGTTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 19 0.51
30 2 0.05
31 16 0.43
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.46
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:13827800 original size:237 final size:237
Alignment explanation
Indices: 13827365--13827806 Score: 625
Period size: 237 Copynumber: 1.9 Consensus size: 237
13827355 ACTTCCTCAG
* * *
13827365 AAATCAGCTTGGAATCTTTAATCTTGATGGAGATCTACCTCAGAATCAACTTCAAGGATGTTCTT
1 AAATCAGCTTGGAATCTTCAATCTTGATGGAGAACTACCTCAAAATCAACTTCAAGGATGTTCTT
* * *
13827430 TTGGGTAATTTTCGTGCAAGAACAAGAGGACTACTATTCTCCCTTCTCATTTCCTTATATATGCC
66 TTGGGTAATTTTCGTGCAAAAACAAGACGACTACTATTCTCCCTTCTCATTTCCTTATATATACC
* ** * *
13827495 TTCTCAAAGTGTCGAAAACCTAAAATCCGAAAATCCTTACTGGTGTCGTACATGAGTCCAGCGAG
131 TTCTCAAAGTGTCAAAAACCTAAAATCAAAAAATCCATACTGGTGTCGTACAGGAGTCCAGCGAG
13827560 TTACACGCCCGTGTAGAACACTGTTGACTGTGTATAGCTTCC
196 TTACACGCCCGTGTAGAACACTGTTGACTGTGTATAGCTTCC
* *** * *
13827602 AAATTAGCTTGGAATCTTCAATCTTGATGGAGAACTGTTTCAAAATCAACTTCAGGGGTGTTCTT
1 AAATCAGCTTGGAATCTTCAATCTTGATGGAGAACTACCTCAAAATCAACTTCAAGGATGTTCTT
* * * * * *
13827667 TTGGGTAATTTTTGTGCAAAAATAAGACGACTATTGTTCTCCCTTTTTATTTCCTTATATATACC
66 TTGGGTAATTTTCGTGCAAAAACAAGACGACTACTATTCTCCCTTCTCATTTCCTTATATATACC
** * *
13827732 TTCTCAAAGTGTCAAAAACCTAAAAAT-AAAAAATCCATGTTGGTGTCGTACAGGAGTCTAGTGA
131 TTCTCAAAGTGTCAAAAACCT-AAAATCAAAAAATCCATACTGGTGTCGTACAGGAGTCCAGCGA
13827796 GTTACACGCCC
195 GTTACACGCCC
13827807 TGTCCACACA
Statistics
Matches: 177, Mismatches: 27, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
237 172 0.97
238 5 0.03
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (237 bp):
AAATCAGCTTGGAATCTTCAATCTTGATGGAGAACTACCTCAAAATCAACTTCAAGGATGTTCTT
TTGGGTAATTTTCGTGCAAAAACAAGACGACTACTATTCTCCCTTCTCATTTCCTTATATATACC
TTCTCAAAGTGTCAAAAACCTAAAATCAAAAAATCCATACTGGTGTCGTACAGGAGTCCAGCGAG
TTACACGCCCGTGTAGAACACTGTTGACTGTGTATAGCTTCC
Found at i:13828506 original size:108 final size:109
Alignment explanation
Indices: 13828389--13828612 Score: 416
Period size: 110 Copynumber: 2.1 Consensus size: 109
13828379 ATAAAAGAAG
13828389 GGCTTAGGGCCTTCTTTACTTGACACTTGTCCATTTTCCA-TTTTTTGACATAATAATATAATGG
1 GGCTTAGGGCCTTCTTTACTTGACACTTGTCCATTTTCCATTTTTTTGACATAATAATATAATGG
13828453 ATAAATTTCAATTCTAATCCCTCTATTTTTTTTAGATTATAAAA
66 ATAAATTTCAATTCTAATCCCTCTATTTTTTTTAGATTATAAAA
*
13828497 GGCTTAGGGCCTTCTTTACTTGACACTTGTCCATTTTCCATTTTTTTTGACATAATAATATAGTG
1 GGCTTAGGGCCTTCTTTACTTGACACTTGTCCATTTTCCA-TTTTTTTGACATAATAATATAATG
13828562 GATAAATTTCAATTCTAATCCCTCTATTTTTTTTAGATTATAAAA
65 GATAAATTTCAATTCTAATCCCTCTATTTTTTTTAGATTATAAAA
13828607 GG-TTAG
1 GGCTTAG
13828613 TTAATTTTCA
Statistics
Matches: 113, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
108 40 0.35
109 4 0.04
110 69 0.61
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.45
Consensus pattern (109 bp):
GGCTTAGGGCCTTCTTTACTTGACACTTGTCCATTTTCCATTTTTTTGACATAATAATATAATGG
ATAAATTTCAATTCTAATCCCTCTATTTTTTTTAGATTATAAAA
Found at i:13829828 original size:2 final size:2
Alignment explanation
Indices: 13829821--13829847 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13829811 GACTTCATCG
13829821 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
13829848 GTTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13830356 original size:416 final size:416
Alignment explanation
Indices: 13829840--13830671 Score: 1646
Period size: 416 Copynumber: 2.0 Consensus size: 416
13829830 ATATATATAT
*
13829840 ATATATATGTTTTTTTTTTACTTTCATTGAAGATGATTATTTAATGAAACAAAATAAGTGATTAG
1 ATATATATGTTTTTTTTTTACTTTCATTGAAAATGATTATTTAATGAAACAAAATAAGTGATTAG
13829905 GTTGGCAGGGATAGCAGTCTACATTAGTGGTAAGATTTCTCCCGATTAAATGTGGGTTTAAATGG
66 GTTGGCAGGGATAGCAGTCTACATTAGTGGTAAGATTTCTCCCGATTAAATGTGGGTTTAAATGG
13829970 ATGGTGTGGTGTGGTGTATTTAGTTTAATTTTTGTTTCACGCTATAGCATTTAAGCTCACTGTCA
131 ATGGTGTGGTGTGGTGTATTTAGTTTAATTTTTGTTTCACGCTATAGCATTTAAGCTCACTGTCA
13830035 TAGCTATTTTTACACTAACCATAGGTAAATGCATCGTCTATCCAAACTCACACTAATTTGATATT
196 TAGCTATTTTTACACTAACCATAGGTAAATGCATCGTCTATCCAAACTCACACTAATTTGATATT
13830100 AAATAAAGGAGAATGGATTGTATGAAATTGTGATACCACAACATCCTTATCCCTTTCTAATAGGA
261 AAATAAAGGAGAATGGATTGTATGAAATTGTGATACCACAACATCCTTATCCCTTTCTAATAGGA
13830165 GAATAACAAATTAAATTTTTTCTTATGAACAAATTAAAATCCAACTAAAAATACTAAAAATCAGG
326 GAATAACAAATTAAATTTTTTCTTATGAACAAATTAAAATCCAACTAAAAATACTAAAAATCAGG
13830230 AGAAAAAATTTAATTTATCATTCTTC
391 AGAAAAAATTTAATTTATCATTCTTC
*
13830256 ATATATATGTTTTTTTTTTCCTTTCATTGAAAATGATTATTTAATGAAACAAAATAAGTGATTAG
1 ATATATATGTTTTTTTTTTACTTTCATTGAAAATGATTATTTAATGAAACAAAATAAGTGATTAG
13830321 GTTGGCAGGGATAGCAGTCTACATTAGTGGTAAGATTTCTCCCGATTAAATGTGGGTTTAAATGG
66 GTTGGCAGGGATAGCAGTCTACATTAGTGGTAAGATTTCTCCCGATTAAATGTGGGTTTAAATGG
13830386 ATGGTGTGGTGTGGTGTATTTAGTTTAATTTTTGTTTCACGCTATAGCATTTAAGCTCACTGTCA
131 ATGGTGTGGTGTGGTGTATTTAGTTTAATTTTTGTTTCACGCTATAGCATTTAAGCTCACTGTCA
13830451 TAGCTATTTTTACACTAACCATAGGTAAATGCATCGTCTATCCAAACTCACACTAATTTGATATT
196 TAGCTATTTTTACACTAACCATAGGTAAATGCATCGTCTATCCAAACTCACACTAATTTGATATT
13830516 AAATAAAGGAGAATGGATTGTATGAAATTGTGATACCACAACATCCTTATCCCTTTCTAATAGGA
261 AAATAAAGGAGAATGGATTGTATGAAATTGTGATACCACAACATCCTTATCCCTTTCTAATAGGA
13830581 GAATAACAAATTAAATTTTTTCTTATGAACAAATTAAAATCCAACTAAAAATACTAAAAATCAGG
326 GAATAACAAATTAAATTTTTTCTTATGAACAAATTAAAATCCAACTAAAAATACTAAAAATCAGG
13830646 AGAAAAAATTTAATTTATCATTCTTC
391 AGAAAAAATTTAATTTATCATTCTTC
13830672 TATTAGAAAG
Statistics
Matches: 414, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
416 414 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (416 bp):
ATATATATGTTTTTTTTTTACTTTCATTGAAAATGATTATTTAATGAAACAAAATAAGTGATTAG
GTTGGCAGGGATAGCAGTCTACATTAGTGGTAAGATTTCTCCCGATTAAATGTGGGTTTAAATGG
ATGGTGTGGTGTGGTGTATTTAGTTTAATTTTTGTTTCACGCTATAGCATTTAAGCTCACTGTCA
TAGCTATTTTTACACTAACCATAGGTAAATGCATCGTCTATCCAAACTCACACTAATTTGATATT
AAATAAAGGAGAATGGATTGTATGAAATTGTGATACCACAACATCCTTATCCCTTTCTAATAGGA
GAATAACAAATTAAATTTTTTCTTATGAACAAATTAAAATCCAACTAAAAATACTAAAAATCAGG
AGAAAAAATTTAATTTATCATTCTTC
Found at i:13831194 original size:11 final size:12
Alignment explanation
Indices: 13831180--13831244 Score: 77
Period size: 11 Copynumber: 5.8 Consensus size: 12
13831170 TTAAATATGG
13831180 ATTTGAGAG-AA
1 ATTTGAGAGCAA
*
13831191 ATTTG-GAAG-GA
1 ATTTGAG-AGCAA
13831202 ATTTGAGAGCAA
1 ATTTGAGAGCAA
13831214 A-TTGAGAGCAA
1 ATTTGAGAGCAA
13831225 A-TTGAGAGCAA
1 ATTTGAGAGCAA
13831236 ATTTGAGAG
1 ATTTGAGAG
13831245 AGGATTAGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
10 1 0.02
11 37 0.77
12 10 0.21
ACGTcount: A:0.42, C:0.05, G:0.29, T:0.25
Consensus pattern (12 bp):
ATTTGAGAGCAA
Found at i:13832335 original size:21 final size:19
Alignment explanation
Indices: 13832311--13832358 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
13832301 TTAAAAAAGC
13832311 ATAAAATATTATTAAATATAT
1 ATAAAATATTA-TAAAT-TAT
13832332 ATAAAATCA-TATAAATTAT
1 ATAAAAT-ATTATAAATTAT
13832351 A-AAAATAT
1 ATAAAATAT
13832359 AAAACTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
17 1 0.04
18 5 0.20
19 4 0.16
20 5 0.20
21 9 0.36
22 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAAAATATTATAAATTAT
Found at i:13832337 original size:29 final size:25
Alignment explanation
Indices: 13832305--13832362 Score: 62
Period size: 29 Copynumber: 2.2 Consensus size: 25
13832295 TTTATCTTAA
13832305 AAAAGCATAAAATATTATTAAATATATAT
1 AAAAGCATAAAA-ATTA-TAAA-A-ATAT
* *
13832334 AAAATCATATAAATTATAAAAATAT
1 AAAAGCATAAAAATTATAAAAATAT
13832359 AAAA
1 AAAA
13832363 CTTATAATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 8 0.30
26 1 0.04
27 4 0.15
28 4 0.15
29 10 0.37
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (25 bp):
AAAAGCATAAAAATTATAAAAATAT
Found at i:13832367 original size:17 final size:18
Alignment explanation
Indices: 13832323--13832396 Score: 55
Period size: 19 Copynumber: 4.0 Consensus size: 18
13832313 AAAATATTAT
13832323 TAAATATATATAAAATCATA
1 TAAAT-TATA-AAAATCATA
13832343 TAAATTATAAAAAT-ATA
1 TAAATTATAAAAATCATA
**
13832360 -AAACTTATAATAGTTC-TA
1 TAAA-TTATAA-AAATCATA
*
13832378 GTAAATTATAAAAAACATA
1 -TAAATTATAAAAATCATA
13832397 AAACATAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
16 3 0.07
17 9 0.21
18 11 0.26
19 12 0.28
20 8 0.19
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (18 bp):
TAAATTATAAAAATCATA
Found at i:13832958 original size:21 final size:22
Alignment explanation
Indices: 13832923--13832968 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
13832913 CTTAAATGTC
*
13832923 TTTTTATTATAATTTCTAAATT
1 TTTTTATTATAATTTATAAATT
* *
13832945 TTTTTA-TATCATTTATAAGTT
1 TTTTTATTATAATTTATAAATT
13832966 TTT
1 TTT
13832969 AAATATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTTTATTATAATTTATAAATT
Found at i:13833184 original size:221 final size:205
Alignment explanation
Indices: 13832800--13833465 Score: 778
Period size: 205 Copynumber: 3.2 Consensus size: 205
13832790 AATTATCACT
* * * ** * *
13832800 TTATTTGTGGAAGATTGAGAACATTTTATTCAATATGAAAATGACCCTAATGATTTGAAAA-TCA
1 TTATTTGTAGAAGATCGAGAACATTTTATTCAACATGAAAATGACCCTAACAATCTAAAAACT-A
* * ** * * * * *
13832864 TTCTCATTAACT-GTTAGATAGATGTCATGTGTTCATTATTATTTAGGGGCTTAAATGTCTTTTT
65 TTCCCATTAACTAG-CAGGCAGATGCCATATGTTCAATATTATTTAGGGGATTAAATATCTTTTT
**
13832928 ATTATAATTTCTAAATTTTTTTATATCATTTATAAGTTTTTAAATATTTTAAATATGTTTTATTA
129 ATTGGAATTTCTAAATTTTTTTATATCATTTATAAGTTTTTAAATATTTTAAATATGTTTTATTA
13832993 ATTTTATAAAAA
194 ATTTTATAAAAA
*
13833005 TTATTTGTAGAAGATCGAGAACATTTTATTCAACATGAAAATGACCCTAACGATCTAAAAACTAT
1 TTATTTGTAGAAGATCGAGAACATTTTATTCAACATGAAAATGACCCTAACAATCTAAAAACTAT
*** * * *
13833070 TCCCATTAACTATTGGGTAGATGCCATATGTTCAATATTATTTAGGGGATTCAATGTCTTTTTAT
66 TCCCATTAACTAGCAGGCAGATGCCATATGTTCAATATTATTTAGGGGATTAAATATCTTTTTAT
* *
13833135 TGTACTTTCTAAATGTAATAATTTATTAGATTTTTTATATCATTTATAAGTTTTTAAATATTTTA
131 TGGAATTTC---------TAA---A-T---TTTTTTATATCATTTATAAGTTTTTAAATATTTTA
* * *
13833200 AATATGTTTCATTAATTATATAAAGA
180 AATATGTTTTATTAATTTTATAAAAA
** *
13833226 TTATTTGTTTAAGATCGAGAACATTTTATTCAACATGAAAATGACCCTAACAATCTAAAAATTAT
1 TTATTTGTAGAAGATCGAGAACATTTTATTCAACATGAAAATGACCCTAACAATCTAAAAACTAT
* * * * * * *
13833291 TCCCATTAACTGGCAGGCAGATGTCATGTGTTTATTTTTATTTAGGGGCTTAAATATCTTTTTAT
66 TCCCATTAACTAGCAGGCAGATGCCATATGTTCAATATTATTTAGGGGATTAAATATCTTTTTAT
* *
13833356 TGGAATTTCTAAATTTTTTTATATCAGTTATAAGTTTTTAAATATTTTAAATATATTTTATTAAT
131 TGGAATTTCTAAATTTTTTTATATCATTTATAAGTTTTTAAATATTTTAAATATGTTTTATTAAT
13833421 TTTATAAAAA
196 TTTATAAAAA
13833431 TTATTTGTAGAAGATCGAGAACATTTTATTCAACA
1 TTATTTGTAGAAGATCGAGAACATTTTATTCAACA
13833466 AGTTTTATAA
Statistics
Matches: 397, Mismatches: 46, Indels: 36
0.83 0.10 0.08
Matches are distributed among these distances:
205 208 0.52
206 1 0.00
208 1 0.00
209 1 0.00
212 3 0.01
214 3 0.01
217 1 0.00
218 1 0.00
221 178 0.45
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (205 bp):
TTATTTGTAGAAGATCGAGAACATTTTATTCAACATGAAAATGACCCTAACAATCTAAAAACTAT
TCCCATTAACTAGCAGGCAGATGCCATATGTTCAATATTATTTAGGGGATTAAATATCTTTTTAT
TGGAATTTCTAAATTTTTTTATATCATTTATAAGTTTTTAAATATTTTAAATATGTTTTATTAAT
TTTATAAAAA
Found at i:13836072 original size:5 final size:5
Alignment explanation
Indices: 13836049--13836091 Score: 56
Period size: 5 Copynumber: 9.2 Consensus size: 5
13836039 TTTTTATGTT
*
13836049 TTATA -TATA TTAT- TT-TA TTATA TTATA TTGTA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
13836092 AAATTAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 1 0.03
4 8 0.24
5 24 0.73
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (5 bp):
TTATA
Found at i:13836077 original size:15 final size:15
Alignment explanation
Indices: 13836054--13836091 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
13836044 ATGTTTTATA
13836054 TATATTAT-TT-TAT
1 TATATTATATTGTAT
13836067 TATATTATATTGTAT
1 TATATTATATTGTAT
13836082 TATATTATAT
1 TATATTATAT
13836092 AAATTAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 8 0.35
14 2 0.09
15 13 0.57
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
TATATTATATTGTAT
Found at i:13839217 original size:115 final size:115
Alignment explanation
Indices: 13839096--13839304 Score: 391
Period size: 115 Copynumber: 1.8 Consensus size: 115
13839086 AATAGTAAAG
* * *
13839096 AATTTTTTTTTGTGTGTTAAAGATGCTTGGGTGAACTCAGTAAATGTTAGGATATGATTGGCATG
1 AATTTTTTTGTGTGTATTAAAGATGCTTGGGTGAACTCAGTAAATGTTAGGATACGATTGGCATG
13839161 CCAATAGGGTCTTGTGCACACTCGTACTAGATTGATTAGCTTGGATGATA
66 CCAATAGGGTCTTGTGCACACTCGTACTAGATTGATTAGCTTGGATGATA
13839211 AATTTTTTTGTGTGTATTAAAGATGCTTGGGTGAACTCAGTAAATGTTAGGATACGATTGGCATG
1 AATTTTTTTGTGTGTATTAAAGATGCTTGGGTGAACTCAGTAAATGTTAGGATACGATTGGCATG
13839276 CCAATAGGGTCTTGTGCACACTCGTACTA
66 CCAATAGGGTCTTGTGCACACTCGTACTA
13839305 TATTATCAGG
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 91 1.00
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.36
Consensus pattern (115 bp):
AATTTTTTTGTGTGTATTAAAGATGCTTGGGTGAACTCAGTAAATGTTAGGATACGATTGGCATG
CCAATAGGGTCTTGTGCACACTCGTACTAGATTGATTAGCTTGGATGATA
Found at i:13844922 original size:12 final size:12
Alignment explanation
Indices: 13844883--13844915 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
13844873 TGAAAATAGA
13844883 TAAATAAAATAT
1 TAAATAAAATAT
*
13844895 TAAATGAAATAT
1 TAAATAAAATAT
13844907 TAAATAAAA
1 TAAATAAAA
13844916 CAGTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:13845048 original size:13 final size:12
Alignment explanation
Indices: 13845013--13845051 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
13845003 ATATTTAAGG
13845013 ATTATAAAAGAA
1 ATTATAAAAGAA
* *
13845025 ATAAAAAAAGAA
1 ATTATAAAAGAA
13845037 ATTAGTAAAAGAA
1 ATTA-TAAAAGAA
13845050 AT
1 AT
13845052 ATTAAGATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 13 0.59
13 9 0.41
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (12 bp):
ATTATAAAAGAA
Found at i:13847436 original size:23 final size:22
Alignment explanation
Indices: 13847410--13847453 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
13847400 TTTTGGTTGG
13847410 TCAAATATTTGATGGGTTAATTT
1 TCAAATATTTG-TGGGTTAATTT
* *
13847433 TCAATTTTTTGTGGGTTAATT
1 TCAAATATTTGTGGGTTAATT
13847454 GTATAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.25, C:0.05, G:0.18, T:0.52
Consensus pattern (22 bp):
TCAAATATTTGTGGGTTAATTT
Found at i:13848940 original size:2 final size:2
Alignment explanation
Indices: 13848933--13848958 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13848923 TTCGATTGAG
13848933 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
13848959 TCTGTTCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13850987 original size:82 final size:82
Alignment explanation
Indices: 13850850--13851015 Score: 323
Period size: 82 Copynumber: 2.0 Consensus size: 82
13850840 ATCAAAATGT
*
13850850 TACGTGAAAGGAAAATCAAACAAGTAGTATACATAATAATACATATTGACTTAAACAAGTGAAAC
1 TACGTGAAAGGAAAATCAAACAAGTAGTATACATAATAATACATATTGACTTAAACAAGTAAAAC
13850915 ATGTGAAATGAAAGACC
66 ATGTGAAATGAAAGACC
13850932 TACGTGAAAGGAAAATCAAACAAGTAGTATACATAATAATACATATTGACTTAAACAAGTAAAAC
1 TACGTGAAAGGAAAATCAAACAAGTAGTATACATAATAATACATATTGACTTAAACAAGTAAAAC
13850997 ATGTGAAATGAAAGACC
66 ATGTGAAATGAAAGACC
13851014 TA
1 TA
13851016 ATAATAATAA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.51, C:0.12, G:0.15, T:0.22
Consensus pattern (82 bp):
TACGTGAAAGGAAAATCAAACAAGTAGTATACATAATAATACATATTGACTTAAACAAGTAAAAC
ATGTGAAATGAAAGACC
Found at i:13851022 original size:3 final size:3
Alignment explanation
Indices: 13851014--13851130 Score: 216
Period size: 3 Copynumber: 39.0 Consensus size: 3
13851004 ATGAAAGACC
13851014 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
13851062 TAA TAA TAA TAA TAA TAA TAG TAA TAG TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13851110 TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
13851131 GGAGAAAATA
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 110 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:13852879 original size:129 final size:128
Alignment explanation
Indices: 13852710--13852941 Score: 331
Period size: 129 Copynumber: 1.8 Consensus size: 128
13852700 GCAACTTTAA
* * * *
13852710 AGATAAGTCTGATGCGATCTGCTCTATTACAACTTCAGAGAGATGAGATCCATCA-TTTTGATCC
1 AGATAAGACTGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCCAT-AGTTTTAATCC
* * *
13852774 GCTCCCCTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTTTGGTCCACTGCAACTTCAGGG
65 ACTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTTTGGTCCACTGCAACTTCAGGG
* * **
13852838 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCGGTAGTTTTAATCC
1 AGATAAGACT-GATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCCATAGTTTTAATCC
*
13852903 ACTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTC
65 ACTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTC
13852942 GAACTACTTC
Statistics
Matches: 90, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
128 10 0.11
129 80 0.89
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (128 bp):
AGATAAGACTGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCCATAGTTTTAATCCA
CTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTTTGGTCCACTGCAACTTCAGGG
Found at i:13853037 original size:88 final size:89
Alignment explanation
Indices: 13852937--13853127 Score: 314
Period size: 88 Copynumber: 2.2 Consensus size: 89
13852927 AGGATTGGTT
* *
13852937 TCTTCGAACTACTTCGCTGCCAATAAAGGAAGACAAGATCTGCTATTTTCAACCTCCTCCACTGC
1 TCTTCGATCTACTTCGCTGCCAATAAAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
13853002 TGCTCAGGGAGACAAGGCTGG-GG
66 TGCTCAGGGAGACAAGGCTGGTGG
*
13853025 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
1 TCTTCGATCTACTTCGCTGCCAATAAAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
*
13853090 TGCTCAGGGAGATAAGGCTGGTGG
66 TGCTCAGGGAGACAAGGCTGGTGG
**
13853114 -CTTAAATCTACTTC
1 TCTTCGATCTACTTC
13853128 CCTACTACCT
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
88 94 0.98
89 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (89 bp):
TCTTCGATCTACTTCGCTGCCAATAAAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
TGCTCAGGGAGACAAGGCTGGTGG
Found at i:13853217 original size:44 final size:44
Alignment explanation
Indices: 13853169--13853319 Score: 151
Period size: 44 Copynumber: 3.4 Consensus size: 44
13853159 CTTTGATCTG
* * *
13853169 TTCCACTACTGTTTAGGGAGACATG-ATCTACAATATTCAACCTA
1 TTCCACTGCTGTTCAGGGAGACAGGAAT-TACAATATTCAACCTA
* * ** *
13853213 TTCCACTGCTGTCCAGGGAGATAGGAATTGTAATCTTCAACCTA
1 TTCCACTGCTGTTCAGGGAGACAGGAATTACAATATTCAACCTA
* * * **
13853257 TTCTACTGCTGTTCAGGGAGATAGGAATTGCAACCTTCAACCTA
1 TTCCACTGCTGTTCAGGGAGACAGGAATTACAATATTCAACCTA
* *
13853301 TTCCGCTGCTGTCCAGGGA
1 TTCCACTGCTGTTCAGGGA
13853320 AATGAGGCTG
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 89 0.98
45 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
TTCCACTGCTGTTCAGGGAGACAGGAATTACAATATTCAACCTA
Found at i:13853373 original size:31 final size:31
Alignment explanation
Indices: 13853338--13853407 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
13853328 TGGTGTCTTC
*
13853338 GATCTGCTTCGCTGTTAGTACATGAAGGCAA
1 GATCTGCTTCGCTGTCAGTACATGAAGGCAA
13853369 GATCTGCTTCGCTGTCAGTACATGAAGGCAA
1 GATCTGCTTCGCTGTCAGTACATGAAGGCAA
13853400 GATCTGCT
1 GATCTGCT
13853408 ATCTTCAGTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (31 bp):
GATCTGCTTCGCTGTCAGTACATGAAGGCAA
Found at i:13853844 original size:6 final size:6
Alignment explanation
Indices: 13853468--13853841 Score: 694
Period size: 6 Copynumber: 62.3 Consensus size: 6
13853458 GATCTGCTTC
13853468 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
1 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
13853516 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
1 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
13853564 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
1 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
13853612 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
1 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
13853660 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
1 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
13853708 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
1 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
13853756 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
1 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA
* * * * * *
13853804 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TA
1 TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TAGTAA TA
13853842 ATAGTAGTAG
Statistics
Matches: 367, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 367 1.00
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (6 bp):
TAGTAA
Found at i:13855511 original size:129 final size:128
Alignment explanation
Indices: 13855342--13855573 Score: 331
Period size: 129 Copynumber: 1.8 Consensus size: 128
13855332 GCAACTTTAA
* * * *
13855342 AGATAAGTCTGATGCGATCTGCTCTATTACAACTTCAGAGAGATGAGATCCATCA-TTTTGATCC
1 AGATAAGACTGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCCAT-AGTTTTAATCC
* * *
13855406 GCTCCCCTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTTTGGTCCACTGCAACTTCAGGG
65 ACTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTTTGGTCCACTGCAACTTCAGGG
* * **
13855470 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCGGTAGTTTTAATCC
1 AGATAAGACT-GATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCCATAGTTTTAATCC
*
13855535 ACTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTC
65 ACTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTC
13855574 GAACTACTTC
Statistics
Matches: 90, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
128 10 0.11
129 80 0.89
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (128 bp):
AGATAAGACTGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCCATAGTTTTAATCCA
CTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTTTGGTCCACTGCAACTTCAGGG
Found at i:13855848 original size:44 final size:44
Alignment explanation
Indices: 13855800--13855950 Score: 151
Period size: 44 Copynumber: 3.4 Consensus size: 44
13855790 CTTTGATCTG
* * *
13855800 TTCCACTACTGTTTAGGGAGACATG-ATCTACAATATTCAACCTA
1 TTCCACTGCTGTTCAGGGAGACAGGAAT-TACAATATTCAACCTA
* * ** *
13855844 TTCCACTGCTGTCCAGGGAGATAGGAATTGTAATCTTCAACCTA
1 TTCCACTGCTGTTCAGGGAGACAGGAATTACAATATTCAACCTA
* * * **
13855888 TTCTACTGCTGTTCAGGGAGATAGGAATTGCAACCTTCAACCTA
1 TTCCACTGCTGTTCAGGGAGACAGGAATTACAATATTCAACCTA
* *
13855932 TTCCGCTGCTGTCCAGGGA
1 TTCCACTGCTGTTCAGGGA
13855951 AATGAGGCTG
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 89 0.98
45 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
TTCCACTGCTGTTCAGGGAGACAGGAATTACAATATTCAACCTA
Found at i:13856004 original size:31 final size:31
Alignment explanation
Indices: 13855969--13856038 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
13855959 TGGTGTCTTC
*
13855969 GATCTGCTTCGCTGTTAGTACATGAAGGCAA
1 GATCTGCTTCGCTGTCAGTACATGAAGGCAA
13856000 GATCTGCTTCGCTGTCAGTACATGAAGGCAA
1 GATCTGCTTCGCTGTCAGTACATGAAGGCAA
13856031 GATCTGCT
1 GATCTGCT
13856039 ATCTTCAGTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (31 bp):
GATCTGCTTCGCTGTCAGTACATGAAGGCAA
Found at i:13856074 original size:45 final size:44
Alignment explanation
Indices: 13856025--13856177 Score: 127
Period size: 44 Copynumber: 3.5 Consensus size: 44
13856015 CAGTACATGA
13856025 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACCCAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAA-CCAGGG
* * * * * *
13856070 AGGCAAG-GCTGGTGTCTTC-GATCTGCTTCGCTGTCAGTA-CAGGA
1 AGGCAAGATCTGCTATCTTCAG-TCTGCTCCGCTG-CA-AACCAGGG
* * *
13856114 AGGCAATATCTACTATCTTCAGTCTGCTCCGCTAC-AACTCAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAAC-CAGGG
**
13856158 AGATAAGAT-TGCTATCTTCA
1 AGGCAAGATCTGCTATCTTCA
13856178 ATCCATTCCA
Statistics
Matches: 82, Mismatches: 19, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
42 1 0.01
43 11 0.13
44 41 0.50
45 27 0.33
46 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (44 bp):
AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACCAGGG
Found at i:13856118 original size:44 final size:45
Alignment explanation
Indices: 13856000--13856146 Score: 124
Period size: 45 Copynumber: 3.3 Consensus size: 45
13855990 ATGAAGGCAA
* *
13856000 GATCTGCTTCGCTGTCAGTACATGAAGGCAAGATCTGCTATCTTC
1 GATCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTC
* * * * *
13856045 -AGTCTGCTCCGCTG-CA-AACCCAGGGAGGCAAG-GCTGGTGTCTTC
1 GA-TCTGCTTCGCTGTCAGTA--CAGGAAGGCAAGAGCTGCTATCTTC
* * *
13856089 GATCTGCTTCGCTGTCAGTACAGGAAGGCAATATCTACTATCTTC
1 GATCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTC
*
13856134 -AGTCTGCTCCGCT
1 GA-TCTGCTTCGCT
13856147 ACAACTCAGG
Statistics
Matches: 78, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
43 1 0.01
44 34 0.44
45 42 0.54
46 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.28
Consensus pattern (45 bp):
GATCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTC
Found at i:13859098 original size:60 final size:60
Alignment explanation
Indices: 13859005--13859126 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
13858995 CGGGACCGAT
13859005 AGTTGAATTGGATAATATAGTACAAGAATCAGCTCCATTAGCCCTTACAGGAATAGTTGA
1 AGTTGAATTGGATAATATAGTACAAGAATCAGCTCCATTAGCCCTTACAGGAATAGTTGA
*
13859065 AGTTGAATTGGATAATATAGTACAAGAATCAGCTCCATTAGCCCTTATAGGAATAGTTGA
1 AGTTGAATTGGATAATATAGTACAAGAATCAGCTCCATTAGCCCTTACAGGAATAGTTGA
13859125 AG
1 AG
13859127 CTCTCCTGGA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (60 bp):
AGTTGAATTGGATAATATAGTACAAGAATCAGCTCCATTAGCCCTTACAGGAATAGTTGA
Found at i:13860414 original size:36 final size:37
Alignment explanation
Indices: 13860338--13860422 Score: 127
Period size: 39 Copynumber: 2.3 Consensus size: 37
13860328 GCAGTAAAGC
* *
13860338 AAAGCAGTAATCCAGAATTTTCCCTGAAAATTCTAATCG
1 AAAGCAGTAAGCCAAAATTTTCCCTG--AATTCTAATCG
13860377 AAAGCAGTAAGCCAAAATTTTCCCTG-ATTCTAATCG
1 AAAGCAGTAAGCCAAAATTTTCCCTGAATTCTAATCG
13860413 AAAGCAGTAA
1 AAAGCAGTAA
13860423 AGCAAAAGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 20 0.45
39 24 0.55
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (37 bp):
AAAGCAGTAAGCCAAAATTTTCCCTGAATTCTAATCG
Found at i:13860429 original size:36 final size:37
Alignment explanation
Indices: 13860338--13860429 Score: 116
Period size: 36 Copynumber: 2.5 Consensus size: 37
13860328 GCAGTAAAGC
** *
13860338 AAAGCAGTAATCCAGAATTTTCCCTGAAAATTCTAATCG
1 AAAGCAGTAAAGCAAAATTTTCCCTG--AATTCTAATCG
13860377 AAAGCAGT-AAGCCAAAATTTTCCCTG-ATTCTAATCG
1 AAAGCAGTAAAG-CAAAATTTTCCCTGAATTCTAATCG
13860413 AAAGCAGTAAAGCAAAA
1 AAAGCAGTAAAGCAAAA
13860430 GAAGTAAAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
36 23 0.48
37 3 0.06
38 1 0.02
39 21 0.44
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (37 bp):
AAAGCAGTAAAGCAAAATTTTCCCTGAATTCTAATCG
Found at i:13860441 original size:22 final size:22
Alignment explanation
Indices: 13860413--13860462 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
13860403 ATTCTAATCG
13860413 AAAGCAGTAAAGCAAAAGAAGT
1 AAAGCAGTAAAGCAAAAGAAGT
* * *
13860435 AAAGCAGTAAGGCACAAGCAGT
1 AAAGCAGTAAAGCAAAAGAAGT
13860457 AAAGCA
1 AAAGCA
13860463 AAGCAGTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.54, C:0.14, G:0.24, T:0.08
Consensus pattern (22 bp):
AAAGCAGTAAAGCAAAAGAAGT
Found at i:13860453 original size:14 final size:13
Alignment explanation
Indices: 13860435--13860472 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
13860425 CAAAAGAAGT
13860435 AAAGCAGTAAGGC
1 AAAGCAGTAAGGC
*
13860448 ACAAGCAGTAAAGC
1 A-AAGCAGTAAGGC
13860462 AAAGCAGTAAG
1 AAAGCAGTAAG
13860473 CCAGAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.50, C:0.16, G:0.26, T:0.08
Consensus pattern (13 bp):
AAAGCAGTAAGGC
Found at i:13862761 original size:18 final size:18
Alignment explanation
Indices: 13862711--13862764 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
13862701 TATCGAGACA
*
13862711 GAGCTTGTGCCTGAGCCT
1 GAGCTTGTGCCTGAGCTT
*
13862729 GAGCCTGTGCCTGAGCTT
1 GAGCTTGTGCCTGAGCTT
* *
13862747 GAGCTTGAGCTTGAGCTT
1 GAGCTTGTGCCTGAGCTT
13862765 CAGCCTCGGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.30
Consensus pattern (18 bp):
GAGCTTGTGCCTGAGCTT
Found at i:13862763 original size:6 final size:6
Alignment explanation
Indices: 13862711--13862764 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
13862701 TATCGAGACA
* * * * * *
13862711 GAGCTT GTGCCT GAGCCT GAGCCT GTGCCT GAGCTT GAGCTT GAGCTT
1 GAGCTT GAGCTT GAGCTT GAGCTT GAGCTT GAGCTT GAGCTT GAGCTT
13862759 GAGCTT
1 GAGCTT
13862765 CAGCCTCGGC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.30
Consensus pattern (6 bp):
GAGCTT
Found at i:13868733 original size:20 final size:20
Alignment explanation
Indices: 13868687--13868738 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
13868677 TAGTAAACCT
* *
13868687 TAACAACCTATTTAAATAAG
1 TAACAAACTATTTAAATAAA
* *
13868707 TACCAAACTATTTGAATAAA
1 TAACAAACTATTTAAATAAA
*
13868727 TAACAAAATATT
1 TAACAAACTATT
13868739 AACAGATTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.13, G:0.04, T:0.31
Consensus pattern (20 bp):
TAACAAACTATTTAAATAAA
Found at i:13873271 original size:20 final size:20
Alignment explanation
Indices: 13873246--13873291 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
13873236 TAGTAAAGCT
*
13873246 TAACAACCTATTTAAATAAG
1 TAACAACCTATTTAAATAAA
*
13873266 TAACAACCTATTTGAATAAA
1 TAACAACCTATTTAAATAAA
13873286 TAACAA
1 TAACAA
13873292 AATATTAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.52, C:0.15, G:0.04, T:0.28
Consensus pattern (20 bp):
TAACAACCTATTTAAATAAA
Found at i:13873297 original size:20 final size:20
Alignment explanation
Indices: 13873254--13873297 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
13873244 CTTAACAACC
* **
13873254 TATTTAAATAAGTAACAACC
1 TATTTAAATAAATAACAAAA
*
13873274 TATTTGAATAAATAACAAAA
1 TATTTAAATAAATAACAAAA
13873294 TATT
1 TATT
13873298 AACAGATTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.52, C:0.09, G:0.05, T:0.34
Consensus pattern (20 bp):
TATTTAAATAAATAACAAAA
Found at i:13874869 original size:43 final size:43
Alignment explanation
Indices: 13874804--13874966 Score: 211
Period size: 43 Copynumber: 3.8 Consensus size: 43
13874794 GCGCCGCTAA
*
13874804 CTTTAGTGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
** * *
13874847 CTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCAAAAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
* * * * *
13874890 CTTTAGCGGCACTTTTCCCAAAAACACCACAAAAGACC-AGAAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAG-AC
*
13874933 CTTTAGCGGCGCTTTTCCCACAAACGCCGTTAAA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
13874967 AATATGACTT
Statistics
Matches: 99, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
42 1 0.01
43 98 0.99
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.21
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
Found at i:13875183 original size:18 final size:18
Alignment explanation
Indices: 13875160--13875218 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
13875150 TTAAAACAAG
13875160 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
13875178 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
13875195 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
13875213 TTACAT
1 TTACAT
13875219 AAGTTCTGTT
Statistics
Matches: 28, Mismatches: 10, Indels: 6
0.64 0.23 0.14
Matches are distributed among these distances:
16 4 0.14
17 7 0.25
18 13 0.46
19 4 0.14
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:13876764 original size:18 final size:18
Alignment explanation
Indices: 13876738--13876773 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
13876728 TTATTGTAAG
*
13876738 GCATGGAAATTGAAGCAA
1 GCATAGAAATTGAAGCAA
13876756 GCATAGAAATTGAAGCAA
1 GCATAGAAATTGAAGCAA
13876774 ATGAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.11, G:0.25, T:0.17
Consensus pattern (18 bp):
GCATAGAAATTGAAGCAA
Found at i:13878435 original size:3 final size:3
Alignment explanation
Indices: 13878429--13878487 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
13878419 GTAACAACAG
13878429 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
13878477 AAT AAT AAT AA
1 AAT AAT AAT AA
13878488 AACTAGTGTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:13883031 original size:15 final size:15
Alignment explanation
Indices: 13883007--13883042 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
13882997 AACACTCACA
*
13883007 AAAATTCCAAGAATG
1 AAAATCCCAAGAATG
13883022 AAAATCCCAAGAATG
1 AAAATCCCAAGAATG
13883037 AAAATC
1 AAAATC
13883043 GAAGTTCATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.56, C:0.17, G:0.11, T:0.17
Consensus pattern (15 bp):
AAAATCCCAAGAATG
Found at i:13883673 original size:41 final size:40
Alignment explanation
Indices: 13883571--13883683 Score: 147
Period size: 41 Copynumber: 2.8 Consensus size: 40
13883561 TTTTATTATT
* * * *
13883571 ATTAGCGGCGTTTTTTCAAAAACGCCGCTAAAGGCCGAGT
1 ATTAGTGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAAGC
13883611 ATTAGTGGCGCTTTTAT-AAAAACGCCGCTAAAGGCCCAAGC
1 ATTAGTGGCGCTTTT-TCAAAAACGCCGCTAAAGG-CCAAGC
**
13883652 ATTAGTGGCGCTTTTTCAAAAATACCGCTAAA
1 ATTAGTGGCGCTTTTTCAAAAACGCCGCTAAA
13883684 TGCCTCAAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
40 31 0.48
41 33 0.52
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (40 bp):
ATTAGTGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAAGC
Found at i:13883766 original size:38 final size:39
Alignment explanation
Indices: 13883724--13883856 Score: 130
Period size: 39 Copynumber: 3.4 Consensus size: 39
13883714 GGGCTTAGGC
*
13883724 TTTTT-GCGGCGCTTTTCGAAAAA-CGCCGCTAATGCTTA
1 TTTTTAGCGGCG-TTTTCCAAAAAGCGCCGCTAATGCTTA
*
13883762 TTTTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTAAA
1 TTTTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCT-TA
** *
13883802 CCTTTAGCGGCGTTTT--ATAAAAGTGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTCCA-AAAAGCGCCGCTAATGCTT-A
* * *
13883841 TTCTTAGTGGCATTTT
1 TTTTTAGCGGCGTTTT
13883857 TTGTCGAAAC
Statistics
Matches: 79, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
38 16 0.20
39 48 0.61
40 15 0.19
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTTA
Found at i:13883880 original size:12 final size:12
Alignment explanation
Indices: 13883863--13883888 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13883853 TTTTTTGTCG
13883863 AAACGCCGCTAA
1 AAACGCCGCTAA
13883875 AAACGCCGCTAA
1 AAACGCCGCTAA
13883887 AA
1 AA
13883889 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:13884732 original size:29 final size:27
Alignment explanation
Indices: 13884674--13884733 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
13884664 TTGATTATTT
*
13884674 TTTTTAAATTTAGTGATTGAGTTGTAAC
1 TTTTCAAATTTAGTGATT-AGTTGTAAC
13884702 TTTTCAAAGTTTAGTGATT-GTTGGTATAC
1 TTTTCAAA-TTTAGTGATTAGTT-GTA-AC
13884731 TTT
1 TTT
13884734 AGTGAATTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 3 0.11
28 10 0.36
29 15 0.54
ACGTcount: A:0.25, C:0.05, G:0.18, T:0.52
Consensus pattern (27 bp):
TTTTCAAATTTAGTGATTAGTTGTAAC
Done.