Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 41 of 210
Found at i:14519098 original size:42 final size:42
Alignment explanation
Indices: 14519052--14519163 Score: 125
Period size: 42 Copynumber: 2.7 Consensus size: 42
14519042 TGCTAAACAG
* ** * **
14519052 AAACCCATAAAGGTTGGACAGAAGCTCATAGGAGCTGAACGA
1 AAACCCATAAGGGTTAAACAGAAGCTCAAAAAAGCTGAACGA
* * *
14519094 AAACCCATACGGGTTAAACTGAAGCTCAAAAAAGCTGAACGG
1 AAACCCATAAGGGTTAAACAGAAGCTCAAAAAAGCTGAACGA
* *
14519136 AAACCCATAAGGGTTAAACTGAAACTCA
1 AAACCCATAAGGGTTAAACAGAAGCTCA
14519164 TATGAGTTAA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.15
Consensus pattern (42 bp):
AAACCCATAAGGGTTAAACAGAAGCTCAAAAAAGCTGAACGA
Found at i:14519165 original size:21 final size:21
Alignment explanation
Indices: 14519094--14519174 Score: 54
Period size: 21 Copynumber: 3.9 Consensus size: 21
14519084 AGCTGAACGA
* *
14519094 AAACCCATACGGGTTAAACTG
1 AAACCCATAAGAGTTAAACTG
* * * * * * *
14519115 AAGCTCAAAAAAGCTGAACGG
1 AAACCCATAAGAGTTAAACTG
*
14519136 AAACCCATAAGGGTTAAACTG
1 AAACCCATAAGAGTTAAACTG
* *
14519157 AAACTCATATGAGTTAAA
1 AAACCCATAAGAGTTAAA
14519175 TGGAGCTCAT
Statistics
Matches: 40, Mismatches: 20, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (21 bp):
AAACCCATAAGAGTTAAACTG
Found at i:14534957 original size:28 final size:29
Alignment explanation
Indices: 14534917--14534973 Score: 107
Period size: 28 Copynumber: 2.0 Consensus size: 29
14534907 TAGTGAGTCT
14534917 ATTTTCAAAATAAATAAA-GGTAACCTTA
1 ATTTTCAAAATAAATAAACGGTAACCTTA
14534945 ATTTTCAAAATAAATAAACGGTAACCTTA
1 ATTTTCAAAATAAATAAACGGTAACCTTA
14534974 TATGAATTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 18 0.64
29 10 0.36
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (29 bp):
ATTTTCAAAATAAATAAACGGTAACCTTA
Found at i:14535370 original size:21 final size:21
Alignment explanation
Indices: 14535346--14535466 Score: 98
Period size: 21 Copynumber: 5.8 Consensus size: 21
14535336 AGTTAACTCA
*
14535346 TATGAGTTTCCGTTTAACCCC
1 TATGAGTTTCCGTTTAACCCT
* * *
14535367 TATGAGTTTCCATTCAACTCT
1 TATGAGTTTCCGTTTAACCCT
* * *
14535388 TTTGAGCTTCAGTTTAACCCT
1 TATGAGTTTCCGTTTAACCCT
* * ***
14535409 TATGGGTTTCCGTTCAGGTCT
1 TATGAGTTTCCGTTTAACCCT
* * *
14535430 TACGAGCTTCCGTTCAACCCT
1 TATGAGTTTCCGTTTAACCCT
*
14535451 TATGGGTTTCCGTTTA
1 TATGAGTTTCCGTTTA
14535467 GCTCTCATGA
Statistics
Matches: 72, Mismatches: 28, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 72 1.00
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.40
Consensus pattern (21 bp):
TATGAGTTTCCGTTTAACCCT
Found at i:14535404 original size:42 final size:42
Alignment explanation
Indices: 14535340--14535480 Score: 147
Period size: 42 Copynumber: 3.4 Consensus size: 42
14535330 AGCTTTAGTT
* * * *
14535340 AACTCATATGAGTTTCCGTTTAACCCCTATGAGTTTCCATTC
1 AACTCTTATGAGCTTCCGTTTAACCCTTATGGGTTTCCATTC
* * *
14535382 AACTCTTTTGAGCTTCAGTTTAACCCTTATGGGTTTCCGTTC
1 AACTCTTATGAGCTTCCGTTTAACCCTTATGGGTTTCCATTC
** * * * *
14535424 AGGTCTTACGAGCTTCCGTTCAACCCTTATGGGTTTCCGTTT
1 AACTCTTATGAGCTTCCGTTTAACCCTTATGGGTTTCCATTC
* *
14535466 AGCTCTCATGAGCTT
1 AACTCTTATGAGCTT
14535481 TTGTTTAGCC
Statistics
Matches: 82, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (42 bp):
AACTCTTATGAGCTTCCGTTTAACCCTTATGGGTTTCCATTC
Found at i:14537106 original size:24 final size:26
Alignment explanation
Indices: 14537079--14537128 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
14537069 TATATCGGGT
*
14537079 AGCTCTGAAGAGCAC-TTAAC-GAGA
1 AGCTCCGAAGAGCACTTTAACAGAGA
*
14537103 AGCTCCGAATAGCACTTTAACAGAGA
1 AGCTCCGAAGAGCACTTTAACAGAGA
14537129 GCACCGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 13 0.59
25 5 0.23
26 4 0.18
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
AGCTCCGAAGAGCACTTTAACAGAGA
Found at i:14537139 original size:25 final size:24
Alignment explanation
Indices: 14537089--14537140 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
14537079 AGCTCTGAAG
*
14537089 AGCACTTAACGAGAAGCTCCGAAT
1 AGCACTTAACGAGAAGCACCGAAT
*
14537113 AGCACTTTAAC-AGAGAGCACCGGAT
1 AGCAC-TTAACGAGA-AGCACCGAAT
14537138 AGC
1 AGC
14537141 CATATAACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.15
Consensus pattern (24 bp):
AGCACTTAACGAGAAGCACCGAAT
Found at i:14537195 original size:24 final size:26
Alignment explanation
Indices: 14537168--14537225 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 26
14537158 AAGCGAGCAC
*
14537168 TAACAGAAAGCTC-CGAAGAGCCT-T
1 TAACAGAAAGCTCACAAAGAGCCTAT
* *
14537192 TAACGGGAAGCTCACAAAGAGCCTAT
1 TAACAGAAAGCTCACAAAGAGCCTAT
*
14537218 AAACAGAA
1 TAACAGAA
14537226 CACTCATAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
24 11 0.42
25 9 0.35
26 6 0.23
ACGTcount: A:0.43, C:0.22, G:0.21, T:0.14
Consensus pattern (26 bp):
TAACAGAAAGCTCACAAAGAGCCTAT
Found at i:14538235 original size:9 final size:9
Alignment explanation
Indices: 14538221--14538251 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14538211 GTTAAACGAA
14538221 TCGAGTTAT
1 TCGAGTTAT
*
14538230 TCGAGTTAA
1 TCGAGTTAT
14538239 TCGAGTTAT
1 TCGAGTTAT
14538248 TCGA
1 TCGA
14538252 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:14538320 original size:9 final size:9
Alignment explanation
Indices: 14538303--14538339 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14538293 TGAGTTTTCG
14538303 AATTCGAAT
1 AATTCGAAT
*
14538312 AACTCGAAT
1 AATTCGAAT
14538321 AATTCGAAT
1 AATTCGAAT
14538330 AATTCGAAT
1 AATTCGAAT
14538339 A
1 A
14538340 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14540891 original size:27 final size:26
Alignment explanation
Indices: 14540861--14540918 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 26
14540851 CACATAATTA
*
14540861 GGAAGCCCTC-TCTCGAGCCATATAATG
1 GGAAG-CCTCATCT-GAGCCATATAACG
*
14540888 GGAAG-CTCATGTGAGCCATATAACG
1 GGAAGCCTCATCTGAGCCATATAACG
14540913 GGAAGC
1 GGAAGC
14540919 TTATCCAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 20 0.74
26 2 0.07
27 5 0.19
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.19
Consensus pattern (26 bp):
GGAAGCCTCATCTGAGCCATATAACG
Found at i:14540905 original size:25 final size:25
Alignment explanation
Indices: 14540875--14541016 Score: 114
Period size: 24 Copynumber: 5.8 Consensus size: 25
14540865 GCCCTCTCTC
*
14540875 GAGCCATATAATGGGAAGCTCATGT
1 GAGCCATATAATGGGAAGCTCATGA
* * *
14540900 GAGCCATATAACGGGAAGCTTATCCA
1 GAGCCATATAATGGGAAGCTCAT-GA
*** *
14540926 G-GTTGTATAATGGGAAGCTCATAA
1 GAGCCATATAATGGGAAGCTCATGA
* *
14540950 GAGCCATA-ATTGGGAAGCTCATGC
1 GAGCCATATAATGGGAAGCTCATGA
* * *
14540974 GAGCCA-ATAACGGGTAGCTC-CGAA
1 GAGCCATATAATGGGAAGCTCATG-A
14540998 GAGCCAT-TAATGGGAAGCT
1 GAGCCATATAATGGGAAGCT
14541017 TTGAATAGCC
Statistics
Matches: 89, Mismatches: 23, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
23 2 0.02
24 46 0.52
25 40 0.45
26 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.21
Consensus pattern (25 bp):
GAGCCATATAATGGGAAGCTCATGA
Found at i:14544194 original size:5 final size:5
Alignment explanation
Indices: 14544184--14544208 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14544174 CTAGCCATCC
14544184 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
14544209 CCCTTCCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:14545738 original size:6 final size:6
Alignment explanation
Indices: 14545701--14545749 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
14545691 CCAAACACAC
* *
14545701 CAGTAAA CAGTAA TCAGTAA CGGTAG CAGTAA CAGTAA CAGTAA CAGTA
1 CAGT-AA CAGTAA -CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
14545750 TTCAACACAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
6 27 0.73
7 10 0.27
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.18
Consensus pattern (6 bp):
CAGTAA
Found at i:14545780 original size:45 final size:44
Alignment explanation
Indices: 14545729--14545857 Score: 186
Period size: 45 Copynumber: 2.9 Consensus size: 44
14545719 AACGGTAGCA
* *
14545729 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAACC
1 GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAACC
* **
14545773 TGTAACAGTAACGGTAACAGTATTCGACACACAAAGTGCCGAGTC
1 -GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAACC
*
14545818 GATAACAATAACAGTAACAGTATTCGACACACAAAGTGCC
1 G-TAACAGTAACAGTAACAGTATTCGACACACAAAGTGCC
14545858 AAATCAGTAA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
44 1 0.01
45 75 0.99
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (44 bp):
GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAACC
Found at i:14547338 original size:21 final size:21
Alignment explanation
Indices: 14547274--14547338 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
14547264 CCTGATCAGT
14547274 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
* ** *
14547295 AAACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
*
14547316 ATAGGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
14547337 AT
1 AT
14547339 CGGCAAAGCC
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:14548339 original size:5 final size:5
Alignment explanation
Indices: 14548320--14548390 Score: 62
Period size: 5 Copynumber: 14.6 Consensus size: 5
14548310 TTAGTTTATT
*
14548320 TAATA T-ATAA TAATA TAATA AAATA TAAT- TAATA TAATA TATTATA
1 TAATA TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TA--ATA
*
14548366 TTATA TAATA -AA-A TAATA T-ATA TAA
1 TAATA TAATA TAATA TAATA TAATA TAA
14548391 AACATAAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
3 1 0.02
4 14 0.26
5 33 0.61
6 2 0.04
7 4 0.07
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:14548382 original size:34 final size:34
Alignment explanation
Indices: 14548320--14548390 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
14548310 TTAGTTTATT
14548320 TAATATATAATAATATAATAAAATATAAT-TAATA
1 TAATATATAATAATATAATAAAATATAATAT-ATA
*
14548354 TAATATATTATATTATATAAT-AAA-ATAATATATA
1 TAATATA-TA-ATAATATAATAAAATATAATATATA
14548388 TAA
1 TAA
14548391 AACATAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
34 18 0.55
35 6 0.18
36 9 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (34 bp):
TAATATATAATAATATAATAAAATATAATATATA
Found at i:14550735 original size:16 final size:16
Alignment explanation
Indices: 14550716--14550750 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
14550706 AAGACAATCG
14550716 TTTAAAATAACAACAT
1 TTTAAAATAACAACAT
*
14550732 TTTAAAATAATAACAT
1 TTTAAAATAACAACAT
14550748 TTT
1 TTT
14550751 TCTTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (16 bp):
TTTAAAATAACAACAT
Found at i:14553639 original size:25 final size:24
Alignment explanation
Indices: 14553572--14553639 Score: 57
Period size: 25 Copynumber: 2.8 Consensus size: 24
14553562 CAATGACTTT
* * *
14553572 AAAATAGTAGGAA-AATTAACAAT
1 AAAATAGTAGCAATAAATAACAAC
* **
14553595 AAAATAATAGTTATACAATAACAAC
1 AAAATAGTAGCAATA-AATAACAAC
14553620 AAAATAGTAGCAATATAATA
1 AAAATAGTAGCAATA-AATA
14553640 GTGAAATAGT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
23 10 0.29
24 1 0.03
25 23 0.68
ACGTcount: A:0.60, C:0.07, G:0.09, T:0.24
Consensus pattern (24 bp):
AAAATAGTAGCAATAAATAACAAC
Found at i:14559387 original size:26 final size:26
Alignment explanation
Indices: 14559356--14559424 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
14559346 GCCCATTTTT
* *
14559356 AATAAACATTAAAAAATTGTTTTAAA
1 AATAAAAATTAAAAAATTATTTTAAA
*
14559382 AATAAAAAAATAAAAAA-TATTTTAAA
1 AAT-AAAAATTAAAAAATTATTTTAAA
*
14559408 ATTAAAAATTAAAAAAT
1 AATAAAAATTAAAAAAT
14559425 AAAAATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 12 0.33
26 13 0.36
27 11 0.31
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (26 bp):
AATAAAAATTAAAAAATTATTTTAAA
Found at i:14559396 original size:7 final size:7
Alignment explanation
Indices: 14559379--14559440 Score: 54
Period size: 7 Copynumber: 8.3 Consensus size: 7
14559369 AAATTGTTTT
14559379 AAAAATAA
1 AAAAAT-A
14559387 AAAAATA
1 AAAAATA
14559394 AAAAATA
1 AAAAATA
*
14559401 TTTTAAAATTA
1 ----AAAAATA
*
14559412 AAAATTA
1 AAAAATA
14559419 AAAAAT-
1 AAAAATA
14559425 AAAAATA
1 AAAAATA
14559432 AAAAATA
1 AAAAATA
14559439 AA
1 AA
14559441 TATTTATTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
6 6 0.13
7 29 0.62
8 6 0.13
11 6 0.13
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATA
Found at i:14559408 original size:25 final size:26
Alignment explanation
Indices: 14559365--14559425 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 26
14559355 TAATAAACAT
*
14559365 TAAAAAATTGTTTTAAAAATAAAAAAA
1 TAAAAAA-TATTTTAAAAATAAAAAAA
* *
14559392 TAAAAAATATTTT-AAAATTAAAAAT
1 TAAAAAATATTTTAAAAATAAAAAAA
14559417 TAAAAAATA
1 TAAAAAATA
14559426 AAAATAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 19 0.61
26 5 0.16
27 7 0.23
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (26 bp):
TAAAAAATATTTTAAAAATAAAAAAA
Found at i:14569233 original size:31 final size:32
Alignment explanation
Indices: 14569189--14569250 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 32
14569179 TAGTGAAAGC
14569189 AAGAGTTTTTATTAGGATTCAATTACTCTTGA
1 AAGAGTTTTTATTAGGATTCAATTACTCTTGA
14569221 AAGAG-TTTTATTAGGATTCAATTACTCTTG
1 AAGAGTTTTTATTAGGATTCAATTACTCTTG
14569251 TAATTTGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.83
32 5 0.17
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.44
Consensus pattern (32 bp):
AAGAGTTTTTATTAGGATTCAATTACTCTTGA
Found at i:14569601 original size:4 final size:4
Alignment explanation
Indices: 14569555--14569585 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
14569545 TCTATCCTTT
14569555 TTTA TTTA TTTA TTTA TTTA TTTA -TTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
14569586 ACTAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:14586801 original size:2 final size:2
Alignment explanation
Indices: 14586794--14586818 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14586784 CTTATCCCTC
14586794 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
14586819 GATTTTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14587583 original size:14 final size:16
Alignment explanation
Indices: 14587559--14587590 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
14587549 ACAAGGGTAT
14587559 AATATAATA-TTAAAA
1 AATATAATATTTAAAA
14587574 AATA-AATATTTAAAA
1 AATATAATATTTAAAA
14587589 AA
1 AA
14587591 AGAGAGACGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATATAATATTTAAAA
Found at i:14587666 original size:21 final size:22
Alignment explanation
Indices: 14587627--14587667 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14587617 CTACTTACGA
*
14587627 AATAAAAAGAGTACAATTATGG
1 AATAAAAAGAATACAATTATGG
14587649 AATAAAAAGAATAC-ATTAT
1 AATAAAAAGAATACAATTAT
14587668 CAGTGCACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.59, C:0.05, G:0.12, T:0.24
Consensus pattern (22 bp):
AATAAAAAGAATACAATTATGG
Found at i:14593236 original size:177 final size:178
Alignment explanation
Indices: 14592928--14593283 Score: 696
Period size: 177 Copynumber: 2.0 Consensus size: 178
14592918 TTTTTTAGTG
14592928 TTTGTTTATAGTAGTATATAAGATTACCACAAAATTAATTTTTATGAGTTATAAAAATTATATAA
1 TTTGTTTATAG-AGTATATAAGATTACCACAAAATTAATTTTTATGAGTTATAAAAATTATATAA
14592993 TACATAAAAATAAGTATTGTTCGGCAAAATTGACAATACAAATTACTAGATATAGATATTCAACT
65 TACATAAAAATAAGTATTGTTCGGCAAAATTGACAATACAAATTACTAGATATAGATATTCAACT
14593058 TAATTTTCTAACGGGGCTTTTCCATCTTTATTACTAACCTCTATAGTTA
130 TAATTTTCTAACGGGGCTTTTCCATCTTTATTACTAACCTCTATAGTTA
14593107 TTTGTTTATA-AGTATATAAGATTACCACAAAATTAATTTTTATGAGTTATAAAAATTATATAAT
1 TTTGTTTATAGAGTATATAAGATTACCACAAAATTAATTTTTATGAGTTATAAAAATTATATAAT
14593171 ACATAAAAATAAGTATTGTTCGGCAAAATTGACAATACAAATTACTAGATATAGATATTCAACTT
66 ACATAAAAATAAGTATTGTTCGGCAAAATTGACAATACAAATTACTAGATATAGATATTCAACTT
14593236 AATTTTCTAACGGGGCTTTTCCATCTTTATTACTAACCTCTATAGTTA
131 AATTTTCTAACGGGGCTTTTCCATCTTTATTACTAACCTCTATAGTTA
14593284 CTAATATAAT
Statistics
Matches: 177, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
177 167 0.94
179 10 0.06
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (178 bp):
TTTGTTTATAGAGTATATAAGATTACCACAAAATTAATTTTTATGAGTTATAAAAATTATATAAT
ACATAAAAATAAGTATTGTTCGGCAAAATTGACAATACAAATTACTAGATATAGATATTCAACTT
AATTTTCTAACGGGGCTTTTCCATCTTTATTACTAACCTCTATAGTTA
Found at i:14599014 original size:13 final size:14
Alignment explanation
Indices: 14598986--14599019 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
14598976 CAACCCACTA
*
14598986 AGCCAAATACCCCT
1 AGCCCAATACCCCT
14599000 AGCCCAATA-CCCT
1 AGCCCAATACCCCT
14599013 AGCCCAA
1 AGCCCAA
14599020 CTGGCCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.44, G:0.09, T:0.12
Consensus pattern (14 bp):
AGCCCAATACCCCT
Found at i:14601454 original size:800 final size:797
Alignment explanation
Indices: 14600166--14601666 Score: 2776
Period size: 800 Copynumber: 1.9 Consensus size: 797
14600156 CGTTCTATGT
14600166 AGCCTTATTCCTTTTAAATTTGTTATTTTATTTTACTTATTTTAACTTTTATATATTATTACTAC
1 AGCCTTATTCCTTTTAAATTTGTTATTTTATTTTACTTATTTTAACTTTTATATATTATTACTAC
14600231 ATACTAGTACTTACATTAGGTTTTACTTATATAAATCGAAATGTATATATTAATTTTAAGTTTTT
66 ATACTAGTACTTACATTAGGTTTTACTTATATAAATCGAAATGTATATATTAATTTTAAGTTTTT
14600296 TCTCTTACAATTCTTTCGTTAAGATTCATTTAAACATTTTCTTTGTTTTTTAGCATTATTATAAA
131 TCTCTTACAATTCTTTCGTTAAGATTCATTTAAACATTTTCTTTGTTTTTTAGCATTATTATAAA
* *
14600361 GTTGTTTTTAAATCTTCATATTATTTTTATTTTATTTTACTTGAGTATCTTTAGGAAATTGATTG
196 GTTGTTTTTAAATCATCATATTATTTTTATTTTATTTTACTCGAGTATCTTTAGGAAATTGATTG
*
14600426 TTAATTTTGATGTATTGTATGCTTGGATGTTCCTTAATGTAAATTTAGTTTGCCATTTATCTTTT
261 TTAATTTTGATGTATTGTATGCTTGGATGTTCATTAATGTAAATTTAGTTTGCCATTTATCTTTT
* * * * * *
14600491 ATTTTGTATATTGCTATTCAATTATGTTGTTTGGAAGAATTGTATTTAAAACGTTACGATCGTTA
326 ATTTTGTATATTGCTATTCAATTATGTTGCTTAGAAGAATTGAATTTAAAACCTCACAATC--TA
*
14600556 TATTTTATAGTTCCCAAAAAGACTTGATGTGCATAGGTTCTCGAGGGAATTGTGCCGTAACTTAC
389 TATCTTATAGTTCCCAAAAAGACTTGATGTGCATAGGTTCTCGAGGGAATTGTGCCGTAACTTAC
14600621 TGGGCTTCAATTCTTCTCGATGAATTTAGATGATCAAGTATTCATTTTGGTAAAACCATACATTT
454 TGGGCTTCAATTCTTCTCGATGAATTTAGATGATCAAGTATTCATTTTGGTAAAACCATACATTT
14600686 TTTTAAAATAAAATTTTCAAATTTCAAAATGTCGGATCCTAACTTACTGGATGTGATATTCTGTT
519 TTTTAAAATAAAATTTTCAAATTTCAAAATGTCGGATCCTAACTTACTGGATGTGATATTCTGTT
14600751 ATCCCGATTTTAAAACAAATGCAATGTTTGATGTTTAAGAATTGCGAGGAATCGAAACCTAACTT
584 ATCCCGATTTTAAAACAAATGCAATGTTTGATGTTTAAGAATTGCGAGGAATCGAAACCTAACTT
14600816 ATTGAATTCTGATTTCTCGTTTGACTTAAATAATTAAACAACCTTTTCAAATTTATACATATGCA
649 ATTGAATTCTGATTTCTCGTTTGACTTAAATAATTAAACAACCTTTTCAAATTTATACATATGCA
14600881 TATGTAGTATTTTTAGTAGTATACATACGTATATATATAACAATATATTATTAATTTCAAATGAT
714 TATGTAGTATTTTTAGTAGTATACATACGTATATATATAACAATATATTATTAATTTCAAATGAT
14600946 AAATTTTTTTTTACACAAA
779 AAATTTTTTTTTACACAAA
14600965 AGCCTTATTCCTTTTAAATTTGTTATTTTATTTTACTTATTTTAACTTTTATATATTATTACTAC
1 AGCCTTATTCCTTTTAAATTTGTTATTTTATTTTACTTATTTTAACTTTTATATATTATTACTAC
14601030 ATACTAGTACTTACATTAGGTTTTACTTATATAAATCGAAATGTATATATTAATTTTAAGTTTTT
66 ATACTAGTACTTACATTAGGTTTTACTTATATAAATCGAAATGTATATATTAATTTTAAGTTTTT
14601095 TCTCTTACAATTCTTTCGTTAAGATTCATTTAAACATTTTCTTTGTTTTTTAGCATTATTATCAA
131 TCTCTTACAATTCTTTCGTTAAGATTCATTTAAACATTTTCTTTGTTTTTTAGCATTATTAT-AA
*
14601160 A-TTG-TTTTAAATCATCATATTATTTTTTATTTTTATTTTACTCGAGTATTTTTAGGAAATTGA
195 AGTTGTTTTTAAATCATCATATTA-TTTTTA-TTTTATTTTACTCGAGTATCTTTAGGAAATTGA
14601223 TTGTTAATTTTGATGTATTGTATGCTTGGATGTTCATTAATGTAAATTTAGTTTGCCATTTATCT
258 TTGTTAATTTTGATGTATTGTATGCTTGGATGTTCATTAATGTAAATTTAGTTTGCCATTTATCT
* *
14601288 TTTATTTTGTATATTGCTATTCAATTATGTTGCTTATAAGAGTTGAATTTTATTAAAGCCTCACA
323 TTTATTTTGTATATTGCTATTCAATTATGTTGCTTAGAAGAATTGAA-TTTA--AAA-CCTCACA
14601353 ATC-AT-TCTTATAGTTCCCAAAAAGACTTGATGTGCATAGGTTCTCGAGGGAATTGTGCCGTAA
384 ATCTATATCTTATAGTTCCCAAAAAGACTTGATGTGCATAGGTTCTCGAGGGAATTGTGCCGTAA
14601416 CTTACTGGGCTTCAATTCTTCTCGATGAATTTAGATGATCAAGTATTCATTTTGGTAAAACCATA
449 CTTACTGGGCTTCAATTCTTCTCGATGAATTTAGATGATCAAGTATTCATTTTGGTAAAACCATA
14601481 CATTTTTTTAAAATAAAATTTTCAAATTTCAAAATGTCGGATCCTAACTTACTGGATGTGATATT
514 CATTTTTTTAAAATAAAATTTTCAAATTTCAAAATGTCGGATCCTAACTTACTGGATGTGATATT
14601546 CTGTTATCCCGATTTTAAAACAAATGCAATGTTTGATGTTTAAGAATTGCGAGGAATCGAAACCT
579 CTGTTATCCCGATTTTAAAACAAATGCAATGTTTGATGTTTAAGAATTGCGAGGAATCGAAACCT
14601611 AACTTATTGAATTCTGATTTCTCGTTTGACTTAAATAATTAAACAACCTTTTCAAA
644 AACTTATTGAATTCTGATTTCTCGTTTGACTTAAATAATTAAACAACCTTTTCAAA
14601667 ATGCATAATT
Statistics
Matches: 682, Mismatches: 13, Indels: 13
0.96 0.02 0.02
Matches are distributed among these distances:
798 17 0.02
799 201 0.29
800 448 0.66
801 6 0.01
803 3 0.00
804 7 0.01
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (797 bp):
AGCCTTATTCCTTTTAAATTTGTTATTTTATTTTACTTATTTTAACTTTTATATATTATTACTAC
ATACTAGTACTTACATTAGGTTTTACTTATATAAATCGAAATGTATATATTAATTTTAAGTTTTT
TCTCTTACAATTCTTTCGTTAAGATTCATTTAAACATTTTCTTTGTTTTTTAGCATTATTATAAA
GTTGTTTTTAAATCATCATATTATTTTTATTTTATTTTACTCGAGTATCTTTAGGAAATTGATTG
TTAATTTTGATGTATTGTATGCTTGGATGTTCATTAATGTAAATTTAGTTTGCCATTTATCTTTT
ATTTTGTATATTGCTATTCAATTATGTTGCTTAGAAGAATTGAATTTAAAACCTCACAATCTATA
TCTTATAGTTCCCAAAAAGACTTGATGTGCATAGGTTCTCGAGGGAATTGTGCCGTAACTTACTG
GGCTTCAATTCTTCTCGATGAATTTAGATGATCAAGTATTCATTTTGGTAAAACCATACATTTTT
TTAAAATAAAATTTTCAAATTTCAAAATGTCGGATCCTAACTTACTGGATGTGATATTCTGTTAT
CCCGATTTTAAAACAAATGCAATGTTTGATGTTTAAGAATTGCGAGGAATCGAAACCTAACTTAT
TGAATTCTGATTTCTCGTTTGACTTAAATAATTAAACAACCTTTTCAAATTTATACATATGCATA
TGTAGTATTTTTAGTAGTATACATACGTATATATATAACAATATATTATTAATTTCAAATGATAA
ATTTTTTTTTACACAAA
Found at i:14602887 original size:52 final size:50
Alignment explanation
Indices: 14602807--14602937 Score: 144
Period size: 52 Copynumber: 2.6 Consensus size: 50
14602797 CTGGTATCAA
*
14602807 AAATAT-TAATTTTAAAT-TTTATTTTTTATTTGTACAAAAAAATAATTTT
1 AAATATAT-ATTTTAAATATTTATTATTTATTTGTACAAAAAAATAATTTT
** *
14602856 CAAATATATATTTTAAATTATTTATTATTTATTTGTACCCAAAAATCATTTT
1 -AAATATATATTTTAAA-TATTTATTATTTATTTGTACAAAAAAATAATTTT
* * *
14602908 AAA-A-ATATGTAAAATATTTATCATTTATTT
1 AAATATATATTTTAAATATTTATTATTTATTT
14602938 TTAAAATTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
48 15 0.21
49 8 0.11
50 15 0.21
51 5 0.07
52 28 0.39
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.50
Consensus pattern (50 bp):
AAATATATATTTTAAATATTTATTATTTATTTGTACAAAAAAATAATTTT
Found at i:14602975 original size:25 final size:27
Alignment explanation
Indices: 14602930--14602981 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
14602920 AATATTTATC
*
14602930 ATTTATTTTTAAAATTTTGAATTATGA
1 ATTTATTTTTAAAATTATGAATTATGA
14602957 ATTT-TTTTTAAAA-TATGAATTATGA
1 ATTTATTTTTAAAATTATGAATTATGA
14602982 CTTGTTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 11 0.46
26 9 0.38
27 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (27 bp):
ATTTATTTTTAAAATTATGAATTATGA
Found at i:14605478 original size:43 final size:42
Alignment explanation
Indices: 14605405--14605488 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 42
14605395 TGAGATTAAT
* * *
14605405 GGTGAGGAGTGAGAGGGAAGGGAGCAGTGGTGGGGGTTGGAAC
1 GGTGAAGAGTGAGAGGGAAGGGAG-AGTGGTAGAGGTTGGAAC
*
14605448 GGTGAAGAGTGAGAGGGAATGTGATG-GTGGTAGAGGTTGGA
1 GGTGAAGAGTGAGAGGGAA-GGGA-GAGTGGTAGAGGTTGGA
14605489 CACAACAGCG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
43 31 0.89
44 3 0.09
45 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.55, T:0.18
Consensus pattern (42 bp):
GGTGAAGAGTGAGAGGGAAGGGAGAGTGGTAGAGGTTGGAAC
Found at i:14607479 original size:24 final size:24
Alignment explanation
Indices: 14607445--14607496 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
14607435 TTTCTAGAAG
* **
14607445 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
14607469 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
14607493 ATTT
1 ATTT
14607497 GACTTTGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:14610269 original size:762 final size:762
Alignment explanation
Indices: 14608806--14610330 Score: 3050
Period size: 762 Copynumber: 2.0 Consensus size: 762
14608796 TTGTCAAAAC
14608806 ACTTAGTGACGTGAGACATGTTCCAGAATTGAAGAGAAATTTAATTTTGTTGAGTACTCTTAATT
1 ACTTAGTGACGTGAGACATGTTCCAGAATTGAAGAGAAATTTAATTTTGTTGAGTACTCTTAATT
14608871 CAAAAGGGTACAGATACACAGCTGGAAGTGGGGTTTTGAAGATTTCTAAAAGTTTTCTCGTTGTG
66 CAAAAGGGTACAGATACACAGCTGGAAGTGGGGTTTTGAAGATTTCTAAAAGTTTTCTCGTTGTG
14608936 ATGAAAGGGCGAAGAAAGACTGTCAAGTTATACGTTTTGCAAGGTTCTACTGTTACTGGTGATAC
131 ATGAAAGGGCGAAGAAAGACTGTCAAGTTATACGTTTTGCAAGGTTCTACTGTTACTGGTGATAC
14609001 AACTGTCGCTTCCTCTTCCTTACCTGATGATATATTACTAAACTTTGGCATATGCGCCTAGGGCA
196 AACTGTCGCTTCCTCTTCCTTACCTGATGATATATTACTAAACTTTGGCATATGCGCCTAGGGCA
14609066 TATGAGTGAGAATGGCATGACAGAATTGAACAAAAGATGACTTCTTGATGGGCAAAGAATTTGCA
261 TATGAGTGAGAATGGCATGACAGAATTGAACAAAAGATGACTTCTTGATGGGCAAAGAATTTGCA
14609131 AACTAAAGTTTTGTGAGCATTGCGCTTTTGGGAAGCAAAAGAGAGTTCGATTCACTAGAGAAATC
326 AACTAAAGTTTTGTGAGCATTGCGCTTTTGGGAAGCAAAAGAGAGTTCGATTCACTAGAGAAATC
14609196 CATAACACGAAGGGAACGTTGTAGTATATTCATTCTGATCTGTGGGGGCCATCCAGAGTGCCTTC
391 CATAACACGAAGGGAACGTTGTAGTATATTCATTCTGATCTGTGGGGGCCATCCAGAGTGCCTTC
14609261 GAGAGGTGGAGCTAATTATATGCTAACCTTTATTAATGATTTTTCCAGAAAAGTTTGGGTGTTCT
456 GAGAGGTGGAGCTAATTATATGCTAACCTTTATTAATGATTTTTCCAGAAAAGTTTGGGTGTTCT
14609326 TCCTGAAGCAGAAAAGCGATGTGTTTTCCACATTTAAGTCTTGGAAAATTATGATTGAAAAATAG
521 TCCTGAAGCAGAAAAGCGATGTGTTTTCCACATTTAAGTCTTGGAAAATTATGATTGAAAAATAG
14609391 ACGGGAAAATAAATAAAATACATCCGCACAGACAATGGTTTAGAGTTCTATTCTGATGAGTTTAA
586 ACGGGAAAATAAATAAAATACATCCGCACAGACAATGGTTTAGAGTTCTATTCTGATGAGTTTAA
14609456 TAAACTGTGCAAGTTAGAAGGGATCGTGAGACACTTGACAGTTCATCACACTCCACAGCAAAATG
651 TAAACTGTGCAAGTTAGAAGGGATCGTGAGACACTTGACAGTTCATCACACTCCACAGCAAAATG
14609521 GCATTGCAGAACGAATTAACAGAACGATCATAGTGAAGGTTCGATGT
716 GCATTGCAGAACGAATTAACAGAACGATCATAGTGAAGGTTCGATGT
14609568 ACTTAGTGACGTGAGACATGTTCCAGAATTGAAGAGAAATTTAATTTTGTTGAGTACTCTTAATT
1 ACTTAGTGACGTGAGACATGTTCCAGAATTGAAGAGAAATTTAATTTTGTTGAGTACTCTTAATT
14609633 CAAAAGGGTACAGATACACAGCTGGAAGTGGGGTTTTGAAGATTTCTAAAAGTTTTCTCGTTGTG
66 CAAAAGGGTACAGATACACAGCTGGAAGTGGGGTTTTGAAGATTTCTAAAAGTTTTCTCGTTGTG
14609698 ATGAAAGGGCGAAGAAAGACTGTCAAGTTATACGTTTTGCAAGGTTCTACTGTTACTGGTGATAC
131 ATGAAAGGGCGAAGAAAGACTGTCAAGTTATACGTTTTGCAAGGTTCTACTGTTACTGGTGATAC
14609763 AACTGTCGCTTCCTCTTCCTTACCTGATGATATATTACTAAACTTTGGCATATGCGCCTAGGGCA
196 AACTGTCGCTTCCTCTTCCTTACCTGATGATATATTACTAAACTTTGGCATATGCGCCTAGGGCA
14609828 TATGAGTGAGAATGGCATGACAGAATTGAACAAAAGATGACTTCTTGATGGGCAAAGAATTTGCA
261 TATGAGTGAGAATGGCATGACAGAATTGAACAAAAGATGACTTCTTGATGGGCAAAGAATTTGCA
14609893 AACTAAAGTTTTGTGAGCATTGCGCTTTTGGGAAGCAAAAGAGAGTTCGATTCACTAGAGAAATC
326 AACTAAAGTTTTGTGAGCATTGCGCTTTTGGGAAGCAAAAGAGAGTTCGATTCACTAGAGAAATC
14609958 CATAACACGAAGGGAACGTTGTAGTATATTCATTCTGATCTGTGGGGGCCATCCAGAGTGCCTTC
391 CATAACACGAAGGGAACGTTGTAGTATATTCATTCTGATCTGTGGGGGCCATCCAGAGTGCCTTC
14610023 GAGAGGTGGAGCTAATTATATGCTAACCTTTATTAATGATTTTTCCAGAAAAGTTTGGGTGTTCT
456 GAGAGGTGGAGCTAATTATATGCTAACCTTTATTAATGATTTTTCCAGAAAAGTTTGGGTGTTCT
14610088 TCCTGAAGCAGAAAAGCGATGTGTTTTCCACATTTAAGTCTTGGAAAATTATGATTGAAAAATAG
521 TCCTGAAGCAGAAAAGCGATGTGTTTTCCACATTTAAGTCTTGGAAAATTATGATTGAAAAATAG
14610153 ACGGGAAAATAAATAAAATACATCCGCACAGACAATGGTTTAGAGTTCTATTCTGATGAGTTTAA
586 ACGGGAAAATAAATAAAATACATCCGCACAGACAATGGTTTAGAGTTCTATTCTGATGAGTTTAA
14610218 TAAACTGTGCAAGTTAGAAGGGATCGTGAGACACTTGACAGTTCATCACACTCCACAGCAAAATG
651 TAAACTGTGCAAGTTAGAAGGGATCGTGAGACACTTGACAGTTCATCACACTCCACAGCAAAATG
14610283 GCATTGCAGAACGAATTAACAGAACGATCATAGTGAAGGTTCGATGT
716 GCATTGCAGAACGAATTAACAGAACGATCATAGTGAAGGTTCGATGT
14610330 A
1 A
14610331 TGTTGTCAAA
Statistics
Matches: 763, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
762 763 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (762 bp):
ACTTAGTGACGTGAGACATGTTCCAGAATTGAAGAGAAATTTAATTTTGTTGAGTACTCTTAATT
CAAAAGGGTACAGATACACAGCTGGAAGTGGGGTTTTGAAGATTTCTAAAAGTTTTCTCGTTGTG
ATGAAAGGGCGAAGAAAGACTGTCAAGTTATACGTTTTGCAAGGTTCTACTGTTACTGGTGATAC
AACTGTCGCTTCCTCTTCCTTACCTGATGATATATTACTAAACTTTGGCATATGCGCCTAGGGCA
TATGAGTGAGAATGGCATGACAGAATTGAACAAAAGATGACTTCTTGATGGGCAAAGAATTTGCA
AACTAAAGTTTTGTGAGCATTGCGCTTTTGGGAAGCAAAAGAGAGTTCGATTCACTAGAGAAATC
CATAACACGAAGGGAACGTTGTAGTATATTCATTCTGATCTGTGGGGGCCATCCAGAGTGCCTTC
GAGAGGTGGAGCTAATTATATGCTAACCTTTATTAATGATTTTTCCAGAAAAGTTTGGGTGTTCT
TCCTGAAGCAGAAAAGCGATGTGTTTTCCACATTTAAGTCTTGGAAAATTATGATTGAAAAATAG
ACGGGAAAATAAATAAAATACATCCGCACAGACAATGGTTTAGAGTTCTATTCTGATGAGTTTAA
TAAACTGTGCAAGTTAGAAGGGATCGTGAGACACTTGACAGTTCATCACACTCCACAGCAAAATG
GCATTGCAGAACGAATTAACAGAACGATCATAGTGAAGGTTCGATGT
Found at i:14612637 original size:24 final size:24
Alignment explanation
Indices: 14612604--14612654 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
14612594 TTCTAGGATG
* **
14612604 TTTAGTATTTATGAGTATAATATA
1 TTTAGCATTTATGAACATAATATA
*
14612628 TTTAGCATTTATTAACATAATATA
1 TTTAGCATTTATGAACATAATATA
14612652 TTT
1 TTT
14612655 GACTTTGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.51
Consensus pattern (24 bp):
TTTAGCATTTATGAACATAATATA
Found at i:14615420 original size:3 final size:3
Alignment explanation
Indices: 14615412--14615461 Score: 59
Period size: 3 Copynumber: 17.0 Consensus size: 3
14615402 TAGTAATGAC
* *
14615412 AAT AAT AAT AAT AAT AAT AAT AAT GAA- AAT GAT AAT AAT ATT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
14615456 AAT AAT
1 AAT AAT
14615462 GAACAAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 34 0.85
4 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14617679 original size:18 final size:18
Alignment explanation
Indices: 14617658--14617706 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
14617648 AAATTAACCA
14617658 AATTAACCGAATTACCCG
1 AATTAACCGAATTACCCG
* *
14617676 AATTAACTGAATTACCTG
1 AATTAACCGAATTACCCG
*
14617694 AATTACCCGAATT
1 AATTAACCGAATT
14617707 GAATCACTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:14617687 original size:9 final size:9
Alignment explanation
Indices: 14617649--14617706 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 9
14617639 TTTGGTTAAA
*
14617649 AATTAACCA
1 AATTAACCG
14617658 AATTAACCG
1 AATTAACCG
*
14617667 AATTACCCG
1 AATTAACCG
*
14617676 AATTAACTG
1 AATTAACCG
14617685 AATT-ACCTG
1 AATTAACC-G
*
14617694 AATTACCCG
1 AATTAACCG
14617703 AATT
1 AATT
14617707 GAATCACTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 2 0.05
9 37 0.90
10 2 0.05
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:14617688 original size:27 final size:27
Alignment explanation
Indices: 14617649--14617706 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
14617639 TTTGGTTAAA
14617649 AATTAACCAAATTAACC-GAATTACCCG
1 AATTAACCAAATT-ACCTGAATTACCCG
**
14617676 AATTAACTGAATTACCTGAATTACCCG
1 AATTAACCAAATTACCTGAATTACCCG
14617703 AATT
1 AATT
14617707 GAATCACTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTAACCAAATTACCTGAATTACCCG
Found at i:14617736 original size:17 final size:17
Alignment explanation
Indices: 14617714--14617776 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
14617704 ATTGAATCAC
14617714 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
*** *
14617731 TACATAAGTCTTTGAATCAC
1 TACATAA-T-TAAAAAT-AT
*
14617751 TACATAATTAAAAACAT
1 TACATAATTAAAAATAT
14617768 TACATAATT
1 TACATAATT
14617777 CTTGAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 17 0.50
18 4 0.12
19 5 0.15
20 8 0.24
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:14617751 original size:37 final size:37
Alignment explanation
Indices: 14617705--14617779 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
14617695 ATTACCCGAA
*
14617705 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
14617742 TTGAATCACTACATAATTAAAAACATTACATAATTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
14617779 T
1 T
14617780 GAAATTAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:14623991 original size:5 final size:5
Alignment explanation
Indices: 14623981--14624006 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14623971 GAACAAATAT
14623981 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
14624007 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:14638314 original size:23 final size:23
Alignment explanation
Indices: 14638284--14638328 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14638274 CGAGACATGT
*
14638284 TCTTTTATTAAATATATATAAAC
1 TCTTTTATCAAATATATATAAAC
* *
14638307 TCTTTTATCGAATATGTATAAA
1 TCTTTTATCAAATATATATAAA
14638329 TTTTAAAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (23 bp):
TCTTTTATCAAATATATATAAAC
Found at i:14640541 original size:84 final size:85
Alignment explanation
Indices: 14640419--14640587 Score: 331
Period size: 84 Copynumber: 2.0 Consensus size: 85
14640409 TTAATATATT
14640419 TACTCATTTATTATAAATATTTTTTATTAATTTAATACATTAAGTTAAAATTTTGTTATATAATA
1 TACTCATTTATTATAAATATTTTTTATTAATTTAATACATTAAGTTAAAATTTTGTTATATAATA
14640484 ATTTTGGTGAGTGTTTTCAA
66 ATTTTGGTGAGTGTTTTCAA
14640504 TACTCATTTA-TATAAATATTTTTTATTAATTTAATACATTAAGTTAAAATTTTGTTATATAATA
1 TACTCATTTATTATAAATATTTTTTATTAATTTAATACATTAAGTTAAAATTTTGTTATATAATA
14640568 ATTTTGGTGAGTGTTTTCAA
66 ATTTTGGTGAGTGTTTTCAA
14640588 AACATATATT
Statistics
Matches: 84, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 74 0.88
85 10 0.12
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (85 bp):
TACTCATTTATTATAAATATTTTTTATTAATTTAATACATTAAGTTAAAATTTTGTTATATAATA
ATTTTGGTGAGTGTTTTCAA
Found at i:14644986 original size:32 final size:32
Alignment explanation
Indices: 14644949--14645100 Score: 160
Period size: 32 Copynumber: 4.8 Consensus size: 32
14644939 ACATAAATAT
*
14644949 ATATACAAATCAATTCGGCAATATGTGTATAC
1 ATATACAATTCAATTCGGCAATATGTGTATAC
* * **
14644981 CTATACAATTAAATTCGGCAATATAAGTATAC
1 ATATACAATTCAATTCGGCAATATGTGTATAC
* * * *
14645013 ATATATAATTCATTTCAGCAATAGGTGTATAC
1 ATATACAATTCAATTCGGCAATATGTGTATAC
*** * *
14645045 ATATACAATTCAATTCAAAAATAGGTCTATAC
1 ATATACAATTCAATTCGGCAATATGTGTATAC
* *
14645077 CTATACAATTCAATTCGGAAATAT
1 ATATACAATTCAATTCGGCAATAT
14645101 ATAAAACATG
Statistics
Matches: 98, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 98 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (32 bp):
ATATACAATTCAATTCGGCAATATGTGTATAC
Found at i:14646969 original size:23 final size:23
Alignment explanation
Indices: 14646923--14646965 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
14646913 CATAAAATAT
*
14646923 ATTATATTAAAAGAAAAAATTAA
1 ATTAAATTAAAAGAAAAAATTAA
*
14646946 ATTAAATTAAAA-ACAAAATT
1 ATTAAATTAAAAGAAAAAATT
14646966 TAAAAAACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
ATTAAATTAAAAGAAAAAATTAA
Found at i:14663252 original size:15 final size:15
Alignment explanation
Indices: 14663234--14663281 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
14663224 ATAAATTTTT
*
14663234 AATTAAAAAATATTA
1 AATTAAATAATATTA
**
14663249 AATTATTTAATATTA
1 AATTAAATAATATTA
14663264 AATTCAAATAATA-TA
1 AATT-AAATAATATTA
14663279 AAT
1 AAT
14663282 ATTTTTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 21 0.78
16 6 0.22
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (15 bp):
AATTAAATAATATTA
Found at i:14668424 original size:2 final size:2
Alignment explanation
Indices: 14668419--14668448 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14668409 TAATAATATA
14668419 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
14668449 AATGATATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:14671520 original size:19 final size:20
Alignment explanation
Indices: 14671482--14671521 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14671472 AGTTTGAATC
* *
14671482 AAATTTTATAATTTCTTTTA
1 AAATTTAATAATTTCATTTA
14671502 AAATTTAATAATTT-ATTTA
1 AAATTTAATAATTTCATTTA
14671521 A
1 A
14671522 TTTGAAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (20 bp):
AAATTTAATAATTTCATTTA
Found at i:14675821 original size:7 final size:7
Alignment explanation
Indices: 14675811--14675843 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
14675801 TTGACATTTA
14675811 TTTATAT
1 TTTATAT
14675818 TTTATAT
1 TTTATAT
14675825 TTTATAT
1 TTTATAT
14675832 TTTATAT
1 TTTATAT
14675839 TTTAT
1 TTTAT
14675844 TAATTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATAT
Found at i:14677029 original size:21 final size:21
Alignment explanation
Indices: 14677005--14677171 Score: 109
Period size: 21 Copynumber: 8.0 Consensus size: 21
14676995 TTTTACAAGA
*
14677005 TTCTGTTTAACTCATATGAGT
1 TTCTGTTTAACTCTTATGAGT
* * *
14677026 TTCTGTTTAGCTCTTTTGAGC
1 TTCTGTTTAACTCTTATGAGT
* *
14677047 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTTAACTCTTATGAGT
* * * *
14677068 TTCTGTTCAGCTCTTTTGAGC
1 TTCTGTTTAACTCTTATGAGT
* * *
14677089 TTCTATTTAACCCTTATGGGT
1 TTCTGTTTAACTCTTATGAGT
* * * * ** *
14677110 TTCCGTTCAGCTTTTACAAGC
1 TTCTGTTTAACTCTTATGAGT
* *
14677131 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTTAACTCTTATGAGT
* * *
14677152 TTTTGTTTAGCTCTCATGAG
1 TTCTGTTTAACTCTTATGAG
14677172 CTTTTATTCA
Statistics
Matches: 100, Mismatches: 46, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 100 1.00
ACGTcount: A:0.16, C:0.20, G:0.17, T:0.47
Consensus pattern (21 bp):
TTCTGTTTAACTCTTATGAGT
Found at i:14677030 original size:42 final size:42
Alignment explanation
Indices: 14676983--14677165 Score: 217
Period size: 42 Copynumber: 4.4 Consensus size: 42
14676973 CGTGTTTTAC
* * * *
14676983 TTTCTGTTTAGCT-TTTACAAGATTCTGTTTAACTCATATGAG
1 TTTCTGTTTAGCTCTTT-CAAGCTTCTGTTTAACCCTTATGGG
**
14677025 TTTCTGTTTAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCTGTTTAGCTCTTTCAAGCTTCTGTTTAACCCTTATGGG
* ** *
14677067 TTTCTGTTCAGCTCTTTTGAGCTTCTATTTAACCCTTATGGG
1 TTTCTGTTTAGCTCTTTCAAGCTTCTGTTTAACCCTTATGGG
* *
14677109 TTTCCGTTCAGCT-TTTACAAGCTTCTGTTTAACCCTTATGGG
1 TTTCTGTTTAGCTCTTT-CAAGCTTCTGTTTAACCCTTATGGG
*
14677151 TTTTTGTTTAGCTCT
1 TTTCTGTTTAGCTCT
14677166 CATGAGCTTT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
41 3 0.02
42 116 0.94
43 4 0.03
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (42 bp):
TTTCTGTTTAGCTCTTTCAAGCTTCTGTTTAACCCTTATGGG
Found at i:14685612 original size:29 final size:30
Alignment explanation
Indices: 14685551--14685612 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
14685541 AAAATTATAT
*
14685551 ATAAATTTTAATTTACTGTGTAATTTGATAC
1 ATAAATTTTAATTTAC-GTGTAATTTGACAC
*
14685582 ATAAATTTTGATTTA-GTGTAATTAT-ACAC
1 ATAAATTTTAATTTACGTGTAATT-TGACAC
14685611 AT
1 AT
14685613 GTTACTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 13 0.46
30 1 0.04
31 14 0.50
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.47
Consensus pattern (30 bp):
ATAAATTTTAATTTACGTGTAATTTGACAC
Found at i:14685641 original size:2 final size:2
Alignment explanation
Indices: 14685634--14685668 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
14685624 TGTAGTTCGA
*
14685634 AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14685669 ACTTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:14687655 original size:43 final size:42
Alignment explanation
Indices: 14687608--14687751 Score: 112
Period size: 43 Copynumber: 3.4 Consensus size: 42
14687598 AGAACCGAAT
*
14687608 CTTTAGTGGCGCTTTCACTACAAACGCCGCTAAAGACCATGAG
1 CTTTAGTGGCGCTTTCAC-ACAAACGCCGCTAAAGACCATGAC
* * * * *
14687651 CTTTAGTGGCGCCTTTTC-CACAAACGTCGCAAAAGACCCTAAT
1 CTTTAGTGGCG-C-TTTCACACAAACGCCGCTAAAGACCATGAC
* * * * * * *
14687694 CTTTAGCGACGCTTTGACCAAAAACGCCACTAAAGGCCAAGCAC
1 CTTTAGTGGCGCTTTCA-CACAAACGCCGCTAAAGACCATG-AC
14687738 CTTTAGTGGC-CTTT
1 CTTTAGTGGCGCTTT
14687752 TTTTTTAAAA
Statistics
Matches: 77, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
41 3 0.04
42 1 0.01
43 58 0.75
44 11 0.14
45 4 0.05
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (42 bp):
CTTTAGTGGCGCTTTCACACAAACGCCGCTAAAGACCATGAC
Found at i:14687674 original size:86 final size:87
Alignment explanation
Indices: 14687584--14687747 Score: 195
Period size: 86 Copynumber: 1.9 Consensus size: 87
14687574 CGTATAGACA
* * * * * * *
14687584 ACAAACGCCACTAAAGAACCGAATCTTTAGTGGCGCTTTCACTACAAACGCCGCTAAAGACCATG
1 ACAAACGCCACAAAAGAACCGAATCTTTAGCGACGCTTTCACCAAAAACGCCACTAAAGACCAAG
*
14687649 -AGCTTTAGTGGCGCCTTTTCC
66 CACCTTTAGTGGCGCCTTTTCC
* * * * * *
14687670 ACAAACGTCGCAAAAGACCCTAATCTTTAGCGACGCTTTGACCAAAAACGCCACTAAAGGCCAAG
1 ACAAACGCCACAAAAGAACCGAATCTTTAGCGACGCTTTCACCAAAAACGCCACTAAAGACCAAG
14687735 CACCTTTAGTGGC
66 CACCTTTAGTGGC
14687748 CTTTTTTTTT
Statistics
Matches: 63, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
86 52 0.83
87 11 0.17
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (87 bp):
ACAAACGCCACAAAAGAACCGAATCTTTAGCGACGCTTTCACCAAAAACGCCACTAAAGACCAAG
CACCTTTAGTGGCGCCTTTTCC
Found at i:14688011 original size:21 final size:21
Alignment explanation
Indices: 14687981--14688061 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 21
14687971 TTTGACGCTG
*
14687981 CTCTGCTTCCCTCGCTGCAGC
1 CTCTACTTCCCTCGCTGCAGC
* * **
14688002 CTCTATTTCCCTCACTTTAGC
1 CTCTACTTCCCTCGCTGCAGC
*
14688023 CTCTACTTCCCTCGCTGCAAC
1 CTCTACTTCCCTCGCTGCAGC
* *
14688044 CTGTACTTCTCTCGCTGC
1 CTCTACTTCCCTCGCTGC
14688062 CGTCTCTGCT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.10, C:0.43, G:0.12, T:0.35
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTGCAGC
Found at i:14696615 original size:8 final size:9
Alignment explanation
Indices: 14696584--14696627 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
14696574 ACATTATTAG
14696584 TTTTTTTAT
1 TTTTTTTAT
14696593 TTCCTTTTTAT
1 TT--TTTTTAT
14696604 TTTTTTTAT
1 TTTTTTTAT
14696613 TTTTTCTTAT
1 TTTTT-TTAT
*
14696623 ATTTT
1 TTTTT
14696628 GGTCTTGTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
9 14 0.45
10 8 0.26
11 9 0.29
ACGTcount: A:0.11, C:0.07, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:14696622 original size:19 final size:20
Alignment explanation
Indices: 14696584--14696627 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
14696574 ACATTATTAG
14696584 TTTTTTTATTTCCTTTTTAT-
1 TTTTTTTATTT-CTTTTTATA
14696604 TTTTTTTATTT-TTTCTTATA
1 TTTTTTTATTTCTTT-TTATA
14696624 TTTT
1 TTTT
14696628 GGTCTTGTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.14
19 4 0.18
20 15 0.68
ACGTcount: A:0.11, C:0.07, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTTTATTTCTTTTTATA
Found at i:14698280 original size:114 final size:112
Alignment explanation
Indices: 14697982--14698283 Score: 401
Period size: 112 Copynumber: 2.7 Consensus size: 112
14697972 NNNNNNNNNN
* * * *
14697982 AAAGGCCCCCAAAAATTCAGAAAACGGTGCCGTTGGGTTTAGGCTTGTTGCGGCGCTTTTAAAAA
1 AAAGACCCCCAAAAACTCAGAAAACGGTACCGTTGGGTTTAGGCTTTTTGCGGCGC-TTT-AAAA
* * *
14698047 AACGCCGCTAAAGACCTCAGCATTAGCGGCGCAGTGCAGAAACGTCGCT
64 AACGCCGCTAAAGACCTCAGAATTAGCGGCGCAGTACAGAAACGCCGCT
*
14698096 AAAGA-CCCC-AAAACTCAGAAAACGGTACTGTTGGGTTTAGGCTTTTTGCGGCGCTGTTAAAAA
1 AAAGACCCCCAAAAACTCAGAAAACGGTACCGTTGGGTTTAGGCTTTTTGCGGCGCT-TTAAAAA
* * ** *
14698159 ACCGCCGCTACAGACCTGAGAATTAGCGGCGCTTTATAGAAACGCCGCT
65 A-CGCCGCTAAAGACCTCAGAATTAGCGGCGCAGTACAGAAACGCCGCT
* *
14698208 AAAGACCCCCAAAAACTCAGAAAACGGTACCGTTTGGCTTAGGCTTTTTGCGGCGCTTTCAAATA
1 AAAGACCCCCAAAAACTCAGAAAACGGTACCGTTGGGTTTAGGCTTTTTGCGGCGCTTT-AAA-A
14698273 AACGCCGCTAA
64 AACGCCGCTAA
14698284 TGCTTATTTT
Statistics
Matches: 165, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
111 7 0.04
112 87 0.53
113 10 0.06
114 58 0.35
115 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.22
Consensus pattern (112 bp):
AAAGACCCCCAAAAACTCAGAAAACGGTACCGTTGGGTTTAGGCTTTTTGCGGCGCTTTAAAAAA
CGCCGCTAAAGACCTCAGAATTAGCGGCGCAGTACAGAAACGCCGCT
Found at i:14699675 original size:43 final size:43
Alignment explanation
Indices: 14699600--14699801 Score: 334
Period size: 43 Copynumber: 4.7 Consensus size: 43
14699590 TAAAAGTCAT
* *
14699600 GACCTTTAGCGGCAC-TTTCCCACAAACGCCGCTATAGACCAC
1 GACCTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGACCAG
* *
14699642 GACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCAG
1 GACCTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGACCAG
* *
14699685 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAT
1 GACCTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGACCAG
*
14699728 GACCTTTAGCGGCACTTTTTCCACAAACGCCGCTAAAGACCAG
1 GACCTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGACCAG
14699771 GACCTTTAGCGGCACTTTTCCCACAAACGCC
1 GACCTTTAGCGGCACTTTTCCCACAAACGCC
14699802 NNNNNNNNNN
Statistics
Matches: 149, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
42 14 0.09
43 135 0.91
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.21
Consensus pattern (43 bp):
GACCTTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGACCAG
Found at i:14704788 original size:19 final size:19
Alignment explanation
Indices: 14704727--14704794 Score: 64
Period size: 19 Copynumber: 3.3 Consensus size: 19
14704717 AGAAGGGGGA
*
14704727 AAAAAAGAAGGGATTTTAT
1 AAAAAAGGAGGGATTTTAT
*
14704746 AAAAACGGCGCCAGTGGAATTTTAT
1 AAAAA-AG-G--AG-GG-ATTTTAT
14704771 AAAAAAGGAGGGATTTTAT
1 AAAAAAGGAGGGATTTTAT
14704790 AAAAA
1 AAAAA
14704795 CGCCGTTGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
19 17 0.43
20 3 0.08
21 2 0.05
23 3 0.08
24 3 0.08
25 12 0.30
ACGTcount: A:0.49, C:0.06, G:0.22, T:0.24
Consensus pattern (19 bp):
AAAAAAGGAGGGATTTTAT
Found at i:14705370 original size:21 final size:22
Alignment explanation
Indices: 14705342--14705422 Score: 62
Period size: 21 Copynumber: 3.8 Consensus size: 22
14705332 CCTTAAATCA
*
14705342 TAAACCCTAAATCCCTAACTCT
1 TAAACCCTAAATCCCTAACACT
* *
14705364 T-AACCCTTAA-CTCTTAACACT
1 TAAACCCTAAATC-CCTAACACT
* *
14705385 TAAACCTTAAATCCCTACCA-T
1 TAAACCCTAAATCCCTAACACT
* *
14705406 TAATCCAT-AATCCCTAA
1 TAAACCCTAAATCCCTAA
14705423 ATCCATATAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
20 9 0.20
21 23 0.50
22 13 0.28
23 1 0.02
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAACCCTAAATCCCTAACACT
Found at i:14705394 original size:14 final size:14
Alignment explanation
Indices: 14705357--14705387 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14705347 CCTAAATCCC
*
14705357 TAACTCTTAACCCT
1 TAACTCTTAACACT
14705371 TAACTCTTAACACT
1 TAACTCTTAACACT
14705385 TAA
1 TAA
14705388 ACCTTAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (14 bp):
TAACTCTTAACACT
Found at i:14705684 original size:15 final size:15
Alignment explanation
Indices: 14705650--14705778 Score: 65
Period size: 15 Copynumber: 8.9 Consensus size: 15
14705640 CTAGTTAATC
*
14705650 TAAACCTTAAA-CCT
1 TAAACCTTAAACCCA
14705664 TAAAACCTTAAACCCA
1 T-AAACCTTAAACCCA
*
14705680 TAAACCCTT-AACACA
1 TAAA-CCTTAAACCCA
*
14705695 T-AACCTCTAAA-CCT
1 TAAACCT-TAAACCCA
* ***
14705709 TAAACCCT-AACTTT
1 TAAACCTTAAACCCA
*
14705723 TAAACCATAAA-CCA
1 TAAACCTTAAACCCA
*
14705737 TAAACCATAAA-CCA
1 TAAACCTTAAACCCA
* *
14705751 TAACCCCTAAACCCA
1 TAAACCTTAAACCCA
* *
14705766 TAATCCATAAACC
1 TAAACCTTAAACC
14705779 TTAAAACGGT
Statistics
Matches: 91, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
13 5 0.05
14 38 0.42
15 41 0.45
16 7 0.08
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAACCTTAAACCCA
Found at i:14705718 original size:14 final size:14
Alignment explanation
Indices: 14705650--14705783 Score: 83
Period size: 14 Copynumber: 9.3 Consensus size: 14
14705640 CTAGTTAATC
* *
14705650 TAAACCTTAAACCT
1 TAAACCCTAAACCA
*
14705664 TAAAACCTTAAACCCA
1 T-AAACCCTAAA-CCA
*
14705680 TAAACCCTTAACACA
1 TAAACCCTAAAC-CA
*
14705695 T-AACCTCTAAACCT
1 TAAACC-CTAAACCA
**
14705709 TAAACCCT-AACTTT
1 TAAACCCTAAAC-CA
*
14705723 TAAACCATAAACCA
1 TAAACCCTAAACCA
*
14705737 TAAACCATAAACCA
1 TAAACCCTAAACCA
*
14705751 TAACCCCTAAACCCA
1 TAAACCCTAAA-CCA
* * *
14705766 TAATCCATAAACCT
1 TAAACCCTAAACCA
14705780 TAAA
1 TAAA
14705784 ACGGTAACAC
Statistics
Matches: 97, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
13 3 0.03
14 46 0.47
15 45 0.46
16 3 0.03
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:14705733 original size:7 final size:7
Alignment explanation
Indices: 14705723--14705783 Score: 77
Period size: 7 Copynumber: 8.6 Consensus size: 7
14705713 CCCTAACTTT
14705723 TAAACCA
1 TAAACCA
14705730 TAAACCA
1 TAAACCA
14705737 TAAACCA
1 TAAACCA
14705744 TAAACCA
1 TAAACCA
* *
14705751 TAACCCC
1 TAAACCA
14705758 TAAACCCA
1 TAAA-CCA
*
14705766 TAATCCA
1 TAAACCA
*
14705773 TAAACCT
1 TAAACCA
14705780 TAAA
1 TAAA
14705784 ACGGTAACAC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
7 41 0.89
8 5 0.11
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAACCA
Found at i:14705747 original size:21 final size:21
Alignment explanation
Indices: 14705723--14705835 Score: 86
Period size: 21 Copynumber: 5.3 Consensus size: 21
14705713 CCCTAACTTT
*
14705723 TAAACCATAAACCATAAACCA
1 TAAACCATAAACCCTAAACCA
*
14705744 TAAACCATAACCCCTAAACCCA
1 TAAACCATAAACCCTAAA-CCA
* * **
14705766 TAATCCATAAACCTTAAAACGG
1 TAAACCATAAACCCT-AAACCA
* *
14705788 TAACACC-TAAATCTTAAACTC-
1 TAA-ACCATAAACCCTAAAC-CA
*
14705809 TAAACCATATACCCTAAACCA
1 TAAACCATAAACCCTAAACCA
*
14705830 AAAACC
1 TAAACC
14705836 CAAAACTATA
Statistics
Matches: 72, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
20 4 0.06
21 37 0.51
22 26 0.36
23 5 0.07
ACGTcount: A:0.49, C:0.31, G:0.02, T:0.19
Consensus pattern (21 bp):
TAAACCATAAACCCTAAACCA
Found at i:14706142 original size:41 final size:39
Alignment explanation
Indices: 14706015--14706147 Score: 144
Period size: 41 Copynumber: 3.3 Consensus size: 39
14706005 TAAATTATTT
*
14706015 TAAATCCCTGAGCATTAGCGGCGCTTTTTAGAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGC-TTTTA-AAAACGCCGC
** * *
14706056 TAAA--AATAGAACATTTGCGGCGCTTTATAAAAACGCCGC
1 TAAAGCCCT-GAGCATTAGCGGCGCTTT-TAAAAACGCCGC
14706095 TAAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
1 T-AAAGCCCTGAGCATTAGCGGCGCTTT-T-AAAAACGCCGC
14706137 TAAAGCCCTGA
1 TAAAGCCCTGA
14706148 AAGCTCACAA
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
39 15 0.19
40 18 0.23
41 31 0.40
42 13 0.17
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (39 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTTAAAAACGCCGC
Found at i:14706250 original size:39 final size:40
Alignment explanation
Indices: 14706198--14706312 Score: 153
Period size: 40 Copynumber: 2.9 Consensus size: 40
14706188 CGCTTTCTGG
* *
14706198 AAAA-CGCCGCTAATGCTTG-TTTTTAGCGGCGTTTTCCA
1 AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCCA
* * * * *
14706236 TAAATCGCCACTAATACTCGATCTTTAGCAGCGTTTTCCA
1 AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCCA
14706276 AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTT
1 AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTT
14706313 TTATACAAAC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 3 0.05
39 12 0.19
40 49 0.77
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCCA
Found at i:14716999 original size:9 final size:9
Alignment explanation
Indices: 14716982--14717021 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
14716972 TGTATGATTC
*
14716982 AATTAGGTT
1 AATTCGGTT
14716991 AATTCGGTT
1 AATTCGGTT
*
14717000 AATTCGGGT
1 AATTCGGTT
14717009 AATTCGGTT
1 AATTCGGTT
14717018 AATT
1 AATT
14717022 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (9 bp):
AATTCGGTT
Found at i:14729083 original size:13 final size:13
Alignment explanation
Indices: 14729065--14729090 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14729055 TTTTGATGAT
14729065 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
14729078 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
14729091 GAATTTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:14729703 original size:2 final size:2
Alignment explanation
Indices: 14729696--14729720 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14729686 TTATACATAC
14729696 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14729721 ATCAATAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14732791 original size:30 final size:30
Alignment explanation
Indices: 14732703--14732836 Score: 92
Period size: 30 Copynumber: 4.5 Consensus size: 30
14732693 TTTACAAAAA
* *
14732703 AAAAAAATTGAAGGGTCTAATTGAAATTTT
1 AAAAAAATTGAAGGGTCTAAATAAAATTTT
* ** * * * *
14732733 GAAAATTTTCAAAGAT-TTAATAATAATTTT
1 AAAAAAATTGAAGGGTCTAAATAA-AATTTT
**
14732763 AAAAAAATTGAAGGGTCTAGTTAAAATTTTT
1 AAAAAAATTGAAGGGTCTAAATAAAA-TTTT
* *
14732794 AAAAAAAGT-AAGGGTATAAATAAAATTTT
1 AAAAAAATTGAAGGGTCTAAATAAAATTTT
* **
14732823 CAAAACTTTGAAGG
1 AAAAAAATTGAAGG
14732837 CTTAGGCCCT
Statistics
Matches: 74, Mismatches: 26, Indels: 8
0.69 0.24 0.07
Matches are distributed among these distances:
29 13 0.18
30 45 0.61
31 16 0.22
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.34
Consensus pattern (30 bp):
AAAAAAATTGAAGGGTCTAAATAAAATTTT
Found at i:14737825 original size:15 final size:15
Alignment explanation
Indices: 14737807--14737839 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
14737797 CACTTTTTAC
14737807 TAAATTAGTTTTCTA
1 TAAATTAGTTTTCTA
14737822 TAAATTAGTTTTCTA
1 TAAATTAGTTTTCTA
14737837 TAA
1 TAA
14737840 TAGCTTCTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (15 bp):
TAAATTAGTTTTCTA
Found at i:14738592 original size:15 final size:15
Alignment explanation
Indices: 14738574--14738607 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
14738564 GAAAATCAGC
14738574 AAAAAGAAGAAAAAG
1 AAAAAGAAGAAAAAG
*
14738589 AAAAAGAAGAAGAAG
1 AAAAAGAAGAAAAAG
14738604 AAAA
1 AAAA
14738608 CTGGAAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAAAGAAGAAAAAG
Found at i:14741987 original size:20 final size:20
Alignment explanation
Indices: 14741962--14742000 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
14741952 TTTTCTATCT
14741962 TCATAACTACAATTTTTCAC
1 TCATAACTACAATTTTTCAC
14741982 TCATAACTACAATTTTTCA
1 TCATAACTACAATTTTTCA
14742001 AGTTTTCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (20 bp):
TCATAACTACAATTTTTCAC
Found at i:14744128 original size:11 final size:11
Alignment explanation
Indices: 14744112--14744156 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
14744102 ATTAATGGCA
14744112 AAATTGAAATT
1 AAATTGAAATT
14744123 AAATTGAAATT
1 AAATTGAAATT
* *
14744134 AAAATGAAATA
1 AAATTGAAATT
*
14744145 AAAGTGAAATT
1 AAATTGAAATT
14744156 A
1 A
14744157 GAAAGTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.29
Consensus pattern (11 bp):
AAATTGAAATT
Found at i:14746098 original size:31 final size:35
Alignment explanation
Indices: 14746058--14746141 Score: 88
Period size: 36 Copynumber: 2.5 Consensus size: 35
14746048 AATATCTAAG
14746058 ATATT-TTTAATT-TAA-AA-TATATT-ATATATT
1 ATATTATTTAATTATAATAAGTATATTGATATATT
* *
14746088 ATGTTATTTAATTAATAATAAGTATATTGTTATATT
1 ATATTATTTAATT-ATAATAAGTATATTGATATATT
*
14746124 ATATTATTATAATAATAA
1 ATATTATT-TAATTATAA
14746142 AACAAGAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
30 4 0.09
31 7 0.16
33 3 0.07
34 2 0.05
35 6 0.14
36 17 0.40
37 4 0.09
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (35 bp):
ATATTATTTAATTATAATAAGTATATTGATATATT
Found at i:14747292 original size:22 final size:22
Alignment explanation
Indices: 14747240--14747292 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
14747230 ATTATTAGCG
* * *
14747240 GTGCTCTCCGTTTAGCACATCT
1 GTGCTCTCTGTATAGCACATCA
*
14747262 GTGCTCTCTGTATAGCACTTCA
1 GTGCTCTCTGTATAGCACATCA
14747284 GTGCTCTCT
1 GTGCTCTCT
14747293 ATTCATTAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.13, C:0.30, G:0.19, T:0.38
Consensus pattern (22 bp):
GTGCTCTCTGTATAGCACATCA
Found at i:14749089 original size:50 final size:50
Alignment explanation
Indices: 14749033--14749130 Score: 187
Period size: 50 Copynumber: 2.0 Consensus size: 50
14749023 TTAGACATAA
14749033 AAGTTAGTTGATTACTTGGTTACATGGTATATATGGTTAAACATAATTGT
1 AAGTTAGTTGATTACTTGGTTACATGGTATATATGGTTAAACATAATTGT
*
14749083 AAGTTAGTTGATTACTTGGTTACATGGTATATATGGTTAAATATAATT
1 AAGTTAGTTGATTACTTGGTTACATGGTATATATGGTTAAACATAATT
14749131 ATATTGGTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (50 bp):
AAGTTAGTTGATTACTTGGTTACATGGTATATATGGTTAAACATAATTGT
Found at i:14753329 original size:29 final size:29
Alignment explanation
Indices: 14753296--14753355 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
14753286 ATACAATTTA
* *
14753296 ATATAAATATTTTCATATAT-TTTAAATAT
1 ATATAAATACTAT-ATATATATTTAAATAT
* *
14753325 ATATATATACTATATTTATATTTAAATAT
1 ATATAAATACTATATATATATTTAAATAT
14753354 AT
1 AT
14753356 GTGAATAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (29 bp):
ATATAAATACTATATATATATTTAAATAT
Found at i:14755594 original size:29 final size:29
Alignment explanation
Indices: 14755554--14755613 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
14755544 TTAAGTTAAT
* *
14755554 AAATGATAAAAT-TATATTTTAATACTTTA
1 AAATAATAAAATAT-TAATTTAATACTTTA
*
14755583 AAATAATAAAATATTAATTTAATCCTTTA
1 AAATAATAAAATATTAATTTAATACTTTA
14755612 AA
1 AA
14755614 TTGTATCTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (29 bp):
AAATAATAAAATATTAATTTAATACTTTA
Found at i:14756736 original size:32 final size:32
Alignment explanation
Indices: 14756694--14756754 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
14756684 TTTTTTGAAA
14756694 AATAATTATAACTATTTAAAT-AAT-ATTATTTG
1 AATAATTATAA-TA-TTAAATGAATAATTATTTG
*
14756726 AATAGTTATAATATTAAATGAATAATTAT
1 AATAATTATAATATTAAATGAATAATTAT
14756755 GTGTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.23
31 5 0.19
32 15 0.58
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (32 bp):
AATAATTATAATATTAAATGAATAATTATTTG
Found at i:14756747 original size:20 final size:20
Alignment explanation
Indices: 14756713--14756754 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14756703 AACTATTTAA
** *
14756713 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
14756733 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
14756753 AT
1 AT
14756755 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:14757592 original size:109 final size:108
Alignment explanation
Indices: 14757342--14757648 Score: 483
Period size: 109 Copynumber: 2.8 Consensus size: 108
14757332 TAAGAGTATT
* * * *
14757342 TTTGGCTATTTGGTCCAATGAG-AAATCGAAACCCAGCACATTAGAGCACGTTTTCTTGAATTTC
1 TTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTC
* *
14757406 CAAACGCAAAACATTGCCTTA-TTTTGAAATTTTAAAAGGATA
66 CAAACGCAAAACATTGCCTTACTTTGGAAATATTAAAAGGATA
* *
14757448 TTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTCGAATTC
1 TTTGGCTATTTGGTCGAACGAG-AAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTT
*
14757513 CCAAACGCAAAACATTGCCTTACTTTGGAAATATTGAAAGGATA
65 CCAAACGCAAAACATTGCCTTACTTTGGAAATATTAAAAGGATA
14757557 TTTGGCTATTTGGTCGAACGAGAAAGATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTT
1 TTTGGCTATTTGGTCGAACGAGAAA-ATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTT
* *
14757622 CCAAACACAAAATATTGCCTTACTTTG
65 CCAAACGCAAAACATTGCCTTACTTTG
14757649 AATTTTTTTT
Statistics
Matches: 184, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
106 20 0.11
108 62 0.34
109 102 0.55
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (108 bp):
TTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTC
CAAACGCAAAACATTGCCTTACTTTGGAAATATTAAAAGGATA
Found at i:14758120 original size:47 final size:47
Alignment explanation
Indices: 14758062--14758152 Score: 130
Period size: 47 Copynumber: 1.9 Consensus size: 47
14758052 GTTTTAAAAA
* *
14758062 ATATAAGCATGTATATATATT-CATAAAAATAGAAAATATATATAGAT
1 ATATAAACATGTATATAAATTACA-AAAAATAGAAAATATATATAGAT
* *
14758109 ATATAAACATGTATATAAATTACAAAATATATAAAATATATATA
1 ATATAAACATGTATATAAATTACAAAAAATAGAAAATATATATA
14758153 TGAGTACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 37 0.95
48 2 0.05
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.34
Consensus pattern (47 bp):
ATATAAACATGTATATAAATTACAAAAAATAGAAAATATATATAGAT
Found at i:14758141 original size:18 final size:19
Alignment explanation
Indices: 14758084--14758148 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
14758074 ATATATATTC
* *
14758084 ATAAAAATAGAAAATATAT
1 ATAAATATACAAAATATAT
* * *
14758103 ATAGATATATAAACATGTAT
1 ATAAATATACAAA-ATATAT
14758123 ATAAAT-TACAAAATATAT
1 ATAAATATACAAAATATAT
14758141 A-AAATATA
1 ATAAATATA
14758149 TATATGAGTA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
17 4 0.11
18 8 0.22
19 15 0.41
20 10 0.27
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (19 bp):
ATAAATATACAAAATATAT
Found at i:14758241 original size:31 final size:31
Alignment explanation
Indices: 14758170--14758245 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
14758160 GTATGTATGA
14758170 ATGTATATATATA-AGTTATAAAAAATATAT
1 ATGTATATATATATAGTTATAAAAAATATAT
* ** *
14758200 ATGTACATATATATA-TTATGAAAATGTATTT
1 ATGTATATATATATAGTTAT-AAAAAATATAT
14758231 ATGTATATATATATA
1 ATGTATATATATATA
14758246 ACTAAATTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
30 16 0.41
31 23 0.59
ACGTcount: A:0.47, C:0.01, G:0.08, T:0.43
Consensus pattern (31 bp):
ATGTATATATATATAGTTATAAAAAATATAT
Found at i:14759847 original size:44 final size:44
Alignment explanation
Indices: 14759762--14759879 Score: 137
Period size: 44 Copynumber: 2.7 Consensus size: 44
14759752 GTGGTTTAGT
* *
14759762 CTGCTCCACTGCAACTTTAGGGAGATAGGATTAACAGCTTCAAT
1 CTGCTCCACTGCAACTTTAGGGAGATAAGATTAACAGCTTCAAC
* * * *** *
14759806 TTTCTCCACTGTAACTTTAGGGAGATAAGATTGTTATCTTCAAC
1 CTGCTCCACTGCAACTTTAGGGAGATAAGATTAACAGCTTCAAC
* *
14759850 CTGCTCCACTACAACTTCAGGGAGATAAGA
1 CTGCTCCACTGCAACTTTAGGGAGATAAGA
14759880 CTGGATGCGA
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTTAGGGAGATAAGATTAACAGCTTCAAC
Found at i:14759942 original size:85 final size:86
Alignment explanation
Indices: 14759809--14760181 Score: 255
Period size: 85 Copynumber: 4.3 Consensus size: 86
14759799 CTTCAATTTT
* * * * ** *
14759809 CTCCACTGTAACTTTAGGGAGATAAGAT-TGTTATCTTCAA-CCTGCTCCACTACAACTTCAGGG
1 CTCCACTGCAACTTCAGAGAGATAAGATCTATGGT-TTCAATCCTGCTCCACTGCAACTTCAGGG
14759872 AGATAAGACTGGATGCGATCTG
65 AGATAAGACTGGATGCGATCTG
* * *
14759894 CTCTACTGCAACTTCAGAAAGATAAGATCTATGGTTTCAATCC-GCTCCACTGCAACTTTAGGGA
1 CTCCACTGCAACTTCAGAGAGATAAGATCTATGGTTTCAATCCTGCTCCACTGCAACTTCAGGGA
* * * *
14759958 GATAGGATTGGCTTCTTCTG-TCTG
66 GATAAGACTGG---ATGC-GATCTG
* * * * * * ** **
14759982 CTCCACTACAACTTCAGGGAGATAAGA-C--TGGATGCGAT-CAGCTATACTGCAACTTCAGATA
1 CTCCACTGCAACTTCAGAGAGATAAGATCTATGGTTTCAATCCTGCTCCACTGCAACTTCAGGGA
*** *
14760043 GATAAGATCTGTGATTTTAATCCG
66 GATAAGA-CTG-GA-TGCGATCTG
* * ** *
14760067 CTCCACTGCAACTTCAGGGAGATAGGAT-TA--GTTTCTTTCGTCTTCTCCACTGCAACTTCAGG
1 CTCCACTGCAACTTCAGAGAGATAAGATCTATGGTTTCAATC--CTGCTCCACTGCAACTTCAGG
*
14760129 GAGATAAGACTGGACGCGATCTG
64 GAGATAAGACTGGATGCGATCTG
* *
14760152 CTCTACTGTAACTTCAGAGAGATAAGATCT
1 CTCCACTGCAACTTCAGAGAGATAAGATCT
14760182 GTAATGTATG
Statistics
Matches: 217, Mismatches: 53, Indels: 35
0.71 0.17 0.11
Matches are distributed among these distances:
84 1 0.00
85 147 0.68
86 10 0.05
87 5 0.02
88 53 0.24
89 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (86 bp):
CTCCACTGCAACTTCAGAGAGATAAGATCTATGGTTTCAATCCTGCTCCACTGCAACTTCAGGGA
GATAAGACTGGATGCGATCTG
Found at i:14759951 original size:44 final size:42
Alignment explanation
Indices: 14759809--14760178 Score: 178
Period size: 44 Copynumber: 8.6 Consensus size: 42
14759799 CTTCAATTTT
* * * *
14759809 CTCCACTGTAACTTTAGGGAGATAAGA-TTGTTATCTTCAA-CCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTTG--GT-TTCAATCC-G
* * * * * *
14759853 CTCCACTACAACTTCAGGGAGATAAGAC-TGGATGCGATCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTTGGTTTCAATCCG
* *
14759894 CTCTACTGCAACTTCAGAAAGATAAGATCTATGGTTTCAATCCG
1 CTCCACTGCAACTTCAGAGAGATAAGA-CT-TGGTTTCAATCCG
* * * ** *
14759938 CTCCACTGCAACTTTAGGGAGATAGGA-TTGGCTTCTTCTGTCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTTGG--T-TTCAATCCG
* * * * * *
14759982 CTCCACTACAACTTCAGGGAGATAAGAC-TGGATGCGATCAG
1 CTCCACTGCAACTTCAGAGAGATAAGACTTGGTTTCAATCCG
** * * *
14760023 CTATACTGCAACTTCAGATAGATAAGATCTGTGATTTTAATCCG
1 CTCCACTGCAACTTCAGAGAGATAAGA-CT-TGGTTTCAATCCG
* * * ** *
14760067 CTCCACTGCAACTTCAGGGAGATAGGA-TTAGTTTCTTTCGTCTT
1 CTCCACTGCAACTTCAGAGAGATAAGACTTGGTTTCAATC--C-G
* *** * *
14760111 CTCCACTGCAACTTCAGGGAGATAAGAC-TGGACGCGATCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTTGGTTTCAATCCG
* *
14760152 CTCTACTGTAACTTCAGAGAGATAAGA
1 CTCCACTGCAACTTCAGAGAGATAAGA
14760179 TCTGTAATGT
Statistics
Matches: 244, Mismatches: 66, Indels: 35
0.71 0.19 0.10
Matches are distributed among these distances:
41 87 0.36
42 5 0.02
43 2 0.01
44 150 0.61
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (42 bp):
CTCCACTGCAACTTCAGAGAGATAAGACTTGGTTTCAATCCG
Found at i:14760182 original size:129 final size:128
Alignment explanation
Indices: 14759809--14760183 Score: 545
Period size: 129 Copynumber: 2.9 Consensus size: 128
14759799 CTTCAATTTT
* * **
14759809 CTCCACTGTAACTTTAGGGAGATAAGATTGTTATCTTCAACCTGCTCCACTACAACTTCAGGGAG
1 CTCCACTGCAACTTTAGGGAGATAGGATTGTT-TCTTCAGTCTGCTCCACTACAACTTCAGGGAG
* *
14759874 ATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAAAGATAAGATCTATGGTTTCAATCCG
65 ATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAAAGATAAGATCTGTGATTTCAATCCG
* *
14759938 CTCCACTGCAACTTTAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTACAACTTCAGGGAG
1 CTCCACTGCAACTTTAGGGAGATAGGATT-GTTTCTTCAGTCTGCTCCACTACAACTTCAGGGAG
* * * *
14760003 ATAAGACTGGATGCGATCAGCTATACTGCAACTTCAGATAGATAAGATCTGTGATTTTAATCCG
65 ATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAAAGATAAGATCTGTGATTTCAATCCG
* * *
14760067 CTCCACTGCAACTTCAGGGAGATAGGATTAGTTTCTTTC-GTCTTCTCCACTGCAACTTCAGGGA
1 CTCCACTGCAACTTTAGGGAGATAGGATT-GTTTC-TTCAGTCTGCTCCACTACAACTTCAGGGA
* * *
14760131 GATAAGACTGGACGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGT
64 GATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAAAGATAAGATCTGT
14760184 AATGTATGGC
Statistics
Matches: 222, Mismatches: 22, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
129 217 0.98
130 5 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (128 bp):
CTCCACTGCAACTTTAGGGAGATAGGATTGTTTCTTCAGTCTGCTCCACTACAACTTCAGGGAGA
TAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAAAGATAAGATCTGTGATTTCAATCCG
Found at i:14760372 original size:100 final size:100
Alignment explanation
Indices: 14760191--14760384 Score: 291
Period size: 100 Copynumber: 1.9 Consensus size: 100
14760181 TGTAATGTAT
14760191 GGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTCGTAGCTTCAATCTGTCC
1 GGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTCGTAGCTTCAATCTGTCC
*
14760256 CACTACACCACTAGGGAAGTAAAATTCACCGTTGC
66 CACTACACCACAAGGGAAGTAAAATTCACCGTTGC
* * * * *
14760291 GGCTTCAATCTTTTTAATTGCAATGTTGGGGAAGCAAGATTC-ATCGTTGTAGCTTCAATCTGTT
1 GGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCT-GTCGTAGCTTCAATCTGTC
* * *
14760355 CCACTGCACCGCAAGGGAAGTAATATTCAC
65 CCACTACACCACAAGGGAAGTAAAATTCAC
14760385 TATCTTCGAT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
99 1 0.01
100 83 0.99
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (100 bp):
GGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTCGTAGCTTCAATCTGTCC
CACTACACCACAAGGGAAGTAAAATTCACCGTTGC
Found at i:14760373 original size:50 final size:50
Alignment explanation
Indices: 14760219--14760384 Score: 134
Period size: 50 Copynumber: 3.3 Consensus size: 50
14760209 TGCAATGTCG
* * * * * *
14760219 GGGAAGCAAGATTCGCTGTCGTAGCTTCAATCTGTCCCACTACACCACTA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTA
* * ** * ** * ** * *
14760269 GGGAAGTAAAATTCACCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTA
* *
14760319 GGGAAGCAAGATTCATCGTTGTAGCTTCAATCTGTTCCACTGCACCGCAA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTA
* *
14760369 GGGAAGTAATATTCAC
1 GGGAAGCAAGATTCAC
14760385 TATCTTCGAT
Statistics
Matches: 81, Mismatches: 35, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
50 81 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (50 bp):
GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTA
Found at i:14760599 original size:44 final size:42
Alignment explanation
Indices: 14760386--14760733 Score: 174
Period size: 44 Copynumber: 8.0 Consensus size: 42
14760376 AATATTCACT
* * *
14760386 ATCTTCGATTTGCTTCACTACTGCTTAGGGAGA-CAGAATCTGCA
1 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG-AT-T-CA
* ** * * *
14760430 ATCTTCGACCTATTCTACTACTGCTTAGGGAGACAGGATCTGCA
1 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CA
* * * * * **
14760474 ATCTTCAACCTACTCCACTACTGCTTAAGGAGATAGGGCT-A
1 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCA
**
14760515 ATGGCTTAAATCTGCTTCTCCACTA-T-CTT-GGGAAGATAAGATTCA
1 AT--CTTCGATCTG---CTCCACTACTGCTTAGGG-AGATAAGATTCA
14760560 CCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA
1 --ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CA
* * * * * *
14760606 ATCTTCAACCTACTCCACCACTGCTTAGGGAGATAGGACT-A
1 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCA
** *
14760647 ATGGCTTAAATATGCTTCTCCACTA-T-CTT-GGGAAGATAAGATTCA
1 AT--CTT--CGAT-CTGCTCCACTACTGCTTAGGG-AGATAAGATTCA
*
14760692 CCATCTTCGATCTGATCCACTACTGCTTAGGGAGATAAGATT
1 --ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATT
14760734 TGTTATCTTT
Statistics
Matches: 236, Mismatches: 41, Indels: 54
0.71 0.12 0.16
Matches are distributed among these distances:
41 6 0.03
42 17 0.07
43 21 0.09
44 145 0.61
45 24 0.10
46 19 0.08
47 4 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (42 bp):
ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCA
Found at i:14760742 original size:132 final size:132
Alignment explanation
Indices: 14760446--14760732 Score: 511
Period size: 132 Copynumber: 2.2 Consensus size: 132
14760436 GACCTATTCT
* * *
14760446 ACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTACTGCTTAAGGAGATAGG
1 ACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTCCACCACTGCTTAAGGAGATAGG
* * *
14760511 GCTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCT
66 ACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGAT
14760576 CC
131 CC
*
14760578 ACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTCCACCACTGCTTAGGGAGATAGG
1 ACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTCCACCACTGCTTAAGGAGATAGG
14760643 ACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGAT
66 ACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGAT
14760708 CC
131 CC
14760710 ACTACTGCTTAGGGAGATAAGAT
1 ACTACTGCTTAGGGAGATAAGAT
14760733 TTGTTATCTT
Statistics
Matches: 148, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 148 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTCCACCACTGCTTAAGGAGATAGG
ACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGAT
CC
Found at i:14760848 original size:45 final size:45
Alignment explanation
Indices: 14760784--14760940 Score: 189
Period size: 45 Copynumber: 3.5 Consensus size: 45
14760774 CGATCTGCTT
* *
14760784 CGCTGTTAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGTTC
1 CGCTGTCAGTACAAGAAGGCAAGATCTGCTATCTTTAGTCTGTTC
* * *
14760829 CGCTGTCAGTACAAGAAGGCAAG-GCTAG-TGTC-TTCGATCTGCTTC
1 CGCTGTCAGTACAAGAAGGCAAGATCT-GCTATCTTTAG-TCTG-TTC
*
14760874 AC-C-GTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGTTC
1 -CGCTGTCAGTACAAGAAGGCAAGATCTGCTATCTTTAGTCTGTTC
14760918 CGCTGTCAGTACAAGAAGGCAAG
1 CGCTGTCAGTACAAGAAGGCAAG
14760941 GCTAGTGTCT
Statistics
Matches: 93, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
43 4 0.04
44 32 0.34
45 53 0.57
46 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (45 bp):
CGCTGTCAGTACAAGAAGGCAAGATCTGCTATCTTTAGTCTGTTC
Found at i:14760891 original size:44 final size:44
Alignment explanation
Indices: 14760833--14760984 Score: 186
Period size: 44 Copynumber: 3.4 Consensus size: 44
14760823 CTGTTCCGCT
14760833 GTCAGTACAAGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCACC
1 GTCAGTACAAGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCACC
* * * *
14760877 GTCAGTACAGGAAGGCAAGATCT-GCTATCTT-TAGTCTG-TTC-CGC
1 GTCAGTACAAGAAGGCAAG-GCTAG-TGTCTTCGA-TCTGCTTCAC-C
14760921 TGTCAGTACAAGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCACC
1 -GTCAGTACAAGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCACC
*
14760966 GTCAGTACAGGAAGGCAAG
1 GTCAGTACAAGAAGGCAAG
14760985 ATCTGCTATT
Statistics
Matches: 90, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
43 1 0.01
44 53 0.59
45 35 0.39
46 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (44 bp):
GTCAGTACAAGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCACC
Found at i:14760918 original size:89 final size:89
Alignment explanation
Indices: 14760767--14760993 Score: 418
Period size: 89 Copynumber: 2.6 Consensus size: 89
14760757 GCAAACTATG
* * * *
14760767 GTGTCCTCGATCTGCTTCGCTGTTAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGTTCCGC
1 GTGTCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGTTCCGC
14760832 TGTCAGTACAAGAAGGCAAGGCTA
66 TGTCAGTACAAGAAGGCAAGGCTA
14760856 GTGTCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGTTCCGC
1 GTGTCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGTTCCGC
14760921 TGTCAGTACAAGAAGGCAAGGCTA
66 TGTCAGTACAAGAAGGCAAGGCTA
14760945 GTGTCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTAT
1 GTGTCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTAT
14760994 TTTCACTGAT
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 134 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (89 bp):
GTGTCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGTTCCGC
TGTCAGTACAAGAAGGCAAGGCTA
Found at i:14762252 original size:11 final size:11
Alignment explanation
Indices: 14762236--14762310 Score: 66
Period size: 11 Copynumber: 6.6 Consensus size: 11
14762226 CATTGGCCTC
14762236 TTCTTTTCTTT
1 TTCTTTTCTTT
14762247 TTCTTTTCTTCT
1 TTCTTTTCTT-T
*
14762259 TTCTTTT-TTC
1 TTCTTTTCTTT
14762269 TTCTTTTTCTTTT
1 TTC-TTTTC-TTT
*
14762282 TTTTTTTCTCTT
1 TTCTTTTCT-TT
14762294 TT-TTTTCTCTT
1 TTCTTTTCT-TT
14762305 TT-TTTT
1 TTCTTTT
14762311 ATTGAATGTG
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
10 3 0.05
11 32 0.57
12 17 0.30
13 4 0.07
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTCTTTTCTTT
Found at i:14762258 original size:14 final size:14
Alignment explanation
Indices: 14762241--14762290 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
14762231 GCCTCTTCTT
14762241 TTCTTTTTCTTTTC
1 TTCTTTTTCTTTTC
14762255 TTCTTTCTT-TTTTC
1 TTCTTT-TTCTTTTC
14762269 TTCTTTTTCTTTT-
1 TTCTTTTTCTTTTC
14762282 TT-TTTTTCT
1 TTCTTTTTCT
14762291 CTTTTTTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.21
13 4 0.12
14 21 0.62
15 2 0.06
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TTCTTTTTCTTTTC
Found at i:14762263 original size:23 final size:23
Alignment explanation
Indices: 14762236--14762310 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
14762226 CATTGGCCTC
14762236 TTCTTTTCTTTTTCTTTTCTTCT
1 TTCTTTTCTTTTTCTTTTCTTCT
* *
14762259 TTCTTTT-TTCTTCTTTTTCTTTT
1 TTCTTTTCTTTTTC-TTTTCTTCT
*
14762282 TTTTTTTCTCTTTT-TTTTC-TCT
1 TTCTTTTCT-TTTTCTTTTCTTCT
*
14762304 TTTTTTT
1 TTCTTTT
14762311 ATTGAATGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
22 14 0.32
23 26 0.59
24 1 0.02
25 3 0.07
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (23 bp):
TTCTTTTCTTTTTCTTTTCTTCT
Found at i:14762293 original size:14 final size:14
Alignment explanation
Indices: 14762233--14762310 Score: 60
Period size: 14 Copynumber: 5.8 Consensus size: 14
14762223 TCACATTGGC
*
14762233 CTCTTCTTTTCTTTT
1 CTCTT-TTTTTTTTT
* *
14762248 -TCTTTTCTTCTTT
1 CTCTTTTTTTTTTT
14762261 CT-TTTTTCTTCTTTT
1 CTCTTTTT-TT-TTTT
14762276 -TCTTTTTTTTTTT
1 CTCTTTTTTTTTTT
14762289 CTC---TTTTTTTT
1 CTCTTTTTTTTTTT
14762300 CTCTTTTTTTT
1 CTCTTTTTTTT
14762311 ATTGAATGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 17
0.69 0.07 0.24
Matches are distributed among these distances:
11 11 0.22
13 14 0.28
14 17 0.34
15 8 0.16
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (14 bp):
CTCTTTTTTTTTTT
Found at i:14762310 original size:34 final size:34
Alignment explanation
Indices: 14762234--14762307 Score: 104
Period size: 32 Copynumber: 2.3 Consensus size: 34
14762224 CACATTGGCC
14762234 TCTTC-TTTTCTTTTTCTTTTCTTCTTTCTTTTT
1 TCTTCTTTTTCTTTTTCTTTTCTTCTTTCTTTTT
14762267 TCTTCTTTTTCTTTTT-TTTT-TTCTCTT-TTTTT
1 TCTTCTTTTTCTTTTTCTTTTCTTCT-TTCTTTTT
14762299 TC-TCTTTTT
1 TCTTCTTTTT
14762308 TTTATTGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
31 7 0.18
32 11 0.28
33 11 0.28
34 10 0.26
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (34 bp):
TCTTCTTTTTCTTTTTCTTTTCTTCTTTCTTTTT
Found at i:14766318 original size:109 final size:107
Alignment explanation
Indices: 14766066--14766381 Score: 492
Period size: 109 Copynumber: 2.9 Consensus size: 107
14766056 AAGATATAAG
* * * *
14766066 AGGATATTTGGCTATTTGGTCCAACGAG-AAATCGAAATCCAGCACATTAGAGCACGTTTTCTTG
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
*
14766130 AATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTAAA
66 AATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTAAA
*
14766172 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAG-AAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* *
14766237 -AGATTTCCAAACGCAAAACATTGCTTTACTTTGGAATTATTAAA
65 GA-ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATT-TTAAA
14766281 AGGATATTTGGCTATTTGGTCGAACGAGAAAGATCGAAACCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAGAAA-ATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* *
14766346 GAATTTCCAAACACAAAATATTGCCTTACTTTGAAA
65 GAATTTCCAAACGCAAAACATTGCCTTACTTTGAAA
14766382 AATTTTCTTT
Statistics
Matches: 191, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
106 27 0.14
107 1 0.01
108 67 0.35
109 95 0.50
110 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (107 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
AATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTAAA
Found at i:14766450 original size:20 final size:21
Alignment explanation
Indices: 14766407--14766451 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
14766397 GTATGGTGTT
*
14766407 AATATGCATAATGGAATAATA
1 AATATGCATAATGAAATAATA
14766428 AATATG-ATAATGTAAATAA-A
1 AATATGCATAATG-AAATAATA
14766448 AATA
1 AATA
14766452 ATACGAGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.29
Consensus pattern (21 bp):
AATATGCATAATGAAATAATA
Found at i:14766481 original size:24 final size:24
Alignment explanation
Indices: 14766449--14766500 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
14766439 GTAAATAAAA
14766449 ATAATACGAGCAATAGCAACAAAG
1 ATAATACGAGCAATAGCAACAAAG
14766473 ATAATACGAGCAATAGCAACAAAG
1 ATAATACGAGCAATAGCAACAAAG
14766497 ATAA
1 ATAA
14766501 GTAAAAATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.13
Consensus pattern (24 bp):
ATAATACGAGCAATAGCAACAAAG
Found at i:14766865 original size:47 final size:47
Alignment explanation
Indices: 14766807--14766897 Score: 130
Period size: 47 Copynumber: 1.9 Consensus size: 47
14766797 GTTTTAAAAA
* *
14766807 ATATAAGCATGTATATATATT-CATAAAAATAGAAAATATATATAGAT
1 ATATAAACATGTATATAAATTACA-AAAAATAGAAAATATATATAGAT
* *
14766854 ATATAAACATGTATATAAATTACAAAATATATAAAATATATATA
1 ATATAAACATGTATATAAATTACAAAAAATAGAAAATATATATA
14766898 TGAGTACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 37 0.95
48 2 0.05
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.34
Consensus pattern (47 bp):
ATATAAACATGTATATAAATTACAAAAAATAGAAAATATATATAGAT
Found at i:14766886 original size:18 final size:19
Alignment explanation
Indices: 14766829--14766893 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
14766819 ATATATATTC
* *
14766829 ATAAAAATAGAAAATATAT
1 ATAAATATACAAAATATAT
* * *
14766848 ATAGATATATAAACATGTAT
1 ATAAATATACAAA-ATATAT
14766868 ATAAAT-TACAAAATATAT
1 ATAAATATACAAAATATAT
14766886 A-AAATATA
1 ATAAATATA
14766894 TATATGAGTA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
17 4 0.11
18 8 0.22
19 15 0.41
20 10 0.27
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (19 bp):
ATAAATATACAAAATATAT
Found at i:14766986 original size:31 final size:31
Alignment explanation
Indices: 14766915--14766990 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
14766905 GTATGTATGA
14766915 ATGTATATATATA-AGTTATAAAAAATATAT
1 ATGTATATATATATAGTTATAAAAAATATAT
* ** *
14766945 ATGTACATATATATA-TTATGAAAATGTATTT
1 ATGTATATATATATAGTTAT-AAAAAATATAT
14766976 ATGTATATATATATA
1 ATGTATATATATATA
14766991 ACTAAATTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
30 16 0.41
31 23 0.59
ACGTcount: A:0.47, C:0.01, G:0.08, T:0.43
Consensus pattern (31 bp):
ATGTATATATATATAGTTATAAAAAATATAT
Found at i:14772579 original size:2 final size:2
Alignment explanation
Indices: 14772572--14772611 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
14772562 NNNNNNNNAA
14772572 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14772612 TTGGTGTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14774201 original size:20 final size:20
Alignment explanation
Indices: 14774157--14774206 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
14774147 TATATTTGGC
14774157 AATTACTTT-AATAAATTTTT
1 AATTACTTTAAATAAA-TTTT
*
14774177 TATTACTTTAAATGAAA-TTT
1 AATTACTTTAAAT-AAATTTT
*
14774197 AATTATTTTA
1 AATTACTTTA
14774207 GTTATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 19 0.76
21 3 0.12
22 3 0.12
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (20 bp):
AATTACTTTAAATAAATTTT
Found at i:14780029 original size:134 final size:133
Alignment explanation
Indices: 14779844--14780095 Score: 459
Period size: 134 Copynumber: 1.9 Consensus size: 133
14779834 TGGGTGGTAA
* *
14779844 TCCCTTAATAAACGGATCTGCAATCATAGATTTGTCCCAATATGTTTTATAAACACTTGATCACT
1 TCCCTTAATAAACGGATCTGCAATCATAAATTTGTCCCAATATGTTTTATAAACACCTGATCACT
14779909 TTGAATTTTTACTTTAACAGCCAGAAATTTAAAGTATTTGTGCTTTGACTTTGATGTGCTCCTAT
66 TTGAATTTTTACTTTAACAGCCAGAAATTTAAAGTATTTGTGCTTTGACTTTGATGTGCTCCTAT
14779974 TAT
131 TAT
*
14779977 TCCCTTAATAAGCGGATCTGCAATCATAAAGTTTGTCCCAATATGTTTTATAAACACCTGATCAC
1 TCCCTTAATAAACGGATCTGCAATCATAAA-TTTGTCCCAATATGTTTTATAAACACCTGATCAC
*
14780042 TTTGAATTTTTACTTTAACAGCTAGAAATTTAAAGTATTTGTGCTTTGACTTTG
65 TTTGAATTTTTACTTTAACAGCCAGAAATTTAAAGTATTTGTGCTTTGACTTTG
14780096 CCGTGCTTCT
Statistics
Matches: 114, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
133 28 0.25
134 86 0.75
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (133 bp):
TCCCTTAATAAACGGATCTGCAATCATAAATTTGTCCCAATATGTTTTATAAACACCTGATCACT
TTGAATTTTTACTTTAACAGCCAGAAATTTAAAGTATTTGTGCTTTGACTTTGATGTGCTCCTAT
TAT
Found at i:14781609 original size:10 final size:10
Alignment explanation
Indices: 14781594--14781639 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
14781584 AACATAAAGT
14781594 AAATGAAATA
1 AAATGAAATA
14781604 AAATGAAATA
1 AAATGAAATA
14781614 AAA-GAAA-A
1 AAATGAAATA
14781622 CAAATGAAATA
1 -AAATGAAATA
14781633 AAA-GAAA
1 AAATGAAA
14781640 GAAAGAAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
8 1 0.03
9 11 0.33
10 20 0.61
11 1 0.03
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.13
Consensus pattern (10 bp):
AAATGAAATA
Found at i:14781717 original size:13 final size:14
Alignment explanation
Indices: 14781686--14781721 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
14781676 GAACAGGGGC
14781686 GAAAGAAAGAAAGA
1 GAAAGAAAGAAAGA
*
14781700 AAAAGAAA-AAAGA
1 GAAAGAAAGAAAGA
14781713 GAAAGAAAG
1 GAAAGAAAG
14781722 GAAAAACTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (14 bp):
GAAAGAAAGAAAGA
Found at i:14781923 original size:3 final size:3
Alignment explanation
Indices: 14781915--14781950 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
14781905 GTGAGGTAAG
14781915 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14781951 GATGATGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14781955 original size:3 final size:3
Alignment explanation
Indices: 14781949--14781973 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14781939 TATTATTATT
14781949 ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG A
14781974 GTGAGAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Done.