Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 42 of 210
Found at i:14782154 original size:24 final size:27
Alignment explanation
Indices: 14782118--14782181 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
14782108 ATTTGTGGAT
*
14782118 TAATTATTG-ATTG-AAAGGTG-GAAA
1 TAATGATTGAATTGAAAAGGTGAGAAA
*
14782142 -AATGATTGAATTGAAAATGTGAGAAA
1 TAATGATTGAATTGAAAAGGTGAGAAA
*
14782168 TTATGATTGAATTG
1 TAATGATTGAATTG
14782182 GAGTTATATG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
23 7 0.21
24 4 0.12
25 6 0.18
26 4 0.12
27 12 0.36
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.34
Consensus pattern (27 bp):
TAATGATTGAATTGAAAAGGTGAGAAA
Found at i:14786898 original size:12 final size:12
Alignment explanation
Indices: 14786881--14786934 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
14786871 GATAAATACA
14786881 AATGTAAGAAAG
1 AATGTAAGAAAG
14786893 AATGTAAGAAAG
1 AATGTAAGAAAG
*
14786905 AAAT-TATAGAAACA
1 -AATGTA-AGAAA-G
*
14786919 AATGTAAGAAAT
1 AATGTAAGAAAG
14786931 AATG
1 AATG
14786935 GCTATGCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
12 18 0.50
13 16 0.44
14 2 0.06
ACGTcount: A:0.59, C:0.02, G:0.19, T:0.20
Consensus pattern (12 bp):
AATGTAAGAAAG
Found at i:14786928 original size:13 final size:13
Alignment explanation
Indices: 14786878--14786929 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
14786868 AAAGATAAAT
14786878 ACAAATGTAAGAA
1 ACAAATGTAAGAA
*
14786891 A-GAATGTAAGAA
1 ACAAATGTAAGAA
*
14786903 AGAAAT-TATAGAA
1 ACAAATGTA-AGAA
14786916 ACAAATGTAAGAA
1 ACAAATGTAAGAA
14786929 A
1 A
14786930 TAATGGCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
12 13 0.39
13 18 0.55
14 2 0.06
ACGTcount: A:0.62, C:0.04, G:0.17, T:0.17
Consensus pattern (13 bp):
ACAAATGTAAGAA
Found at i:14788044 original size:20 final size:20
Alignment explanation
Indices: 14788019--14788059 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14788009 CTGTACTGGG
14788019 ATATCAGAGAAAGAAAAAAT
1 ATATCAGAGAAAGAAAAAAT
14788039 ATATCAGAGAAAGAAAAAAT
1 ATATCAGAGAAAGAAAAAAT
14788059 A
1 A
14788060 AAACAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.05, G:0.15, T:0.15
Consensus pattern (20 bp):
ATATCAGAGAAAGAAAAAAT
Found at i:14788328 original size:23 final size:23
Alignment explanation
Indices: 14788302--14788350 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
14788292 CAAGTTGGGA
*
14788302 GTGGGGGGGACGGGAAAAGAAAT
1 GTGGGGGAGACGGGAAAAGAAAT
14788325 GTGGGGGAGACGGGAAAAGAAAT
1 GTGGGGGAGACGGGAAAAGAAAT
14788348 GTG
1 GTG
14788351 TTTAAACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.51, T:0.10
Consensus pattern (23 bp):
GTGGGGGAGACGGGAAAAGAAAT
Found at i:14788425 original size:115 final size:116
Alignment explanation
Indices: 14788274--14788505 Score: 439
Period size: 115 Copynumber: 2.0 Consensus size: 116
14788264 AATAGGGGAA
14788274 ATGGCTTGGGAAAAGTGACAAGTTGGGAGTGGGGGGGACGGGAAAAGAAATGTGGGGGAGACGGG
1 ATGGCTTGGG-AAAGTGACAAGTTGGGAGTGGGGGGGACGGGAAAAGAAATGTGGGGGAGACGGG
14788339 AAAAGAAATGTGTTTAAACAAATTTTAAAATTTTTAAAATATATATATATAC
65 AAAAGAAATGTGTTTAAACAAATTTTAAAATTTTTAAAATATATATATATAC
14788391 ATGGCTTGGG-AAGTGACAAGTTGGGAGTGGGGGGGACGGGAAAAGAAATGTGGGGGAGACGGGA
1 ATGGCTTGGGAAAGTGACAAGTTGGGAGTGGGGGGGACGGGAAAAGAAATGTGGGGGAGACGGGA
*
14788455 AAAGAAATGTGTTTAAACAAATTTTATAATTTTTAAAATATATATATATAC
66 AAAGAAATGTGTTTAAACAAATTTTAAAATTTTTAAAATATATATATATAC
14788506 TATATTCGGG
Statistics
Matches: 114, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
115 104 0.91
117 10 0.09
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.25
Consensus pattern (116 bp):
ATGGCTTGGGAAAGTGACAAGTTGGGAGTGGGGGGGACGGGAAAAGAAATGTGGGGGAGACGGGA
AAAGAAATGTGTTTAAACAAATTTTAAAATTTTTAAAATATATATATATAC
Found at i:14788443 original size:23 final size:23
Alignment explanation
Indices: 14788417--14788465 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
14788407 CAAGTTGGGA
*
14788417 GTGGGGGGGACGGGAAAAGAAAT
1 GTGGGGGAGACGGGAAAAGAAAT
14788440 GTGGGGGAGACGGGAAAAGAAAT
1 GTGGGGGAGACGGGAAAAGAAAT
14788463 GTG
1 GTG
14788466 TTTAAACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.51, T:0.10
Consensus pattern (23 bp):
GTGGGGGAGACGGGAAAAGAAAT
Found at i:14794185 original size:26 final size:25
Alignment explanation
Indices: 14794154--14794202 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
14794144 CTTAAAAAAT
14794154 TTCTATGCGTATTACATCAAATAAAC
1 TTCTAT-CGTATTACATCAAATAAAC
**
14794180 TTCTATTTTATTACATCAAATAA
1 TTCTATCGTATTACATCAAATAA
14794203 TAAATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (25 bp):
TTCTATCGTATTACATCAAATAAAC
Found at i:14794340 original size:24 final size:24
Alignment explanation
Indices: 14794313--14794368 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
14794303 GGCGGCGGTT
*
14794313 GTTCTTCCTCTGGTGGTGATTGTG
1 GTTCTTCCTCCGGTGGTGATTGTG
* *
14794337 GTTCTTCCTCCGGTGGTGGTTTTG
1 GTTCTTCCTCCGGTGGTGATTGTG
14794361 GTTCTTCC
1 GTTCTTCC
14794369 GGTTCGGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.02, C:0.21, G:0.30, T:0.46
Consensus pattern (24 bp):
GTTCTTCCTCCGGTGGTGATTGTG
Found at i:14795582 original size:9 final size:9
Alignment explanation
Indices: 14795566--14795620 Score: 74
Period size: 9 Copynumber: 6.1 Consensus size: 9
14795556 GGTTGCAAAA
14795566 AGGACGATG
1 AGGACGATG
*
14795575 AAGACGATG
1 AGGACGATG
14795584 AGGACGATG
1 AGGACGATG
* *
14795593 ACGACGTTG
1 AGGACGATG
14795602 AGGACGATG
1 AGGACGATG
*
14795611 AGGATGATG
1 AGGACGATG
14795620 A
1 A
14795621 TGTTTCTTCG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.35, C:0.11, G:0.40, T:0.15
Consensus pattern (9 bp):
AGGACGATG
Found at i:14800743 original size:39 final size:40
Alignment explanation
Indices: 14800649--14800747 Score: 164
Period size: 40 Copynumber: 2.5 Consensus size: 40
14800639 TATGTAATGT
* *
14800649 TTTTAATTATGTAGTGATTCAAGGACTTATGTACTTTTTT
1 TTTTAATTATGTAGTGATTCAAAGACTTATGTACTTTTTA
*
14800689 TTTTAATTATGTAGTGATTCAAAGACTTATGTGC-TTTTA
1 TTTTAATTATGTAGTGATTCAAAGACTTATGTACTTTTTA
14800728 TTTTAATTATGTAGTGATTC
1 TTTTAATTATGTAGTGATTC
14800748 GATTTGGTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 24 0.43
40 32 0.57
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (40 bp):
TTTTAATTATGTAGTGATTCAAAGACTTATGTACTTTTTA
Found at i:14800783 original size:17 final size:17
Alignment explanation
Indices: 14800753--14800794 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
14800743 GATTCGATTT
*
14800753 GGTTAAATCGGTTAAGTC
1 GGTT-AATCAGTTAAGTC
14800771 GGTTAATCAGTTAAGTC
1 GGTTAATCAGTTAAGTC
14800788 GGTTAAT
1 GGTTAAT
14800795 TTTTAACCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (17 bp):
GGTTAATCAGTTAAGTC
Found at i:14824402 original size:52 final size:52
Alignment explanation
Indices: 14824253--14824411 Score: 150
Period size: 52 Copynumber: 3.1 Consensus size: 52
14824243 TGCTTCTTGC
14824253 CAAAAATATATTTGATACAAGTCGTTTTAATCAGTTTAAACATACTCTTATT
1 CAAAAATATATTTGATACAAGTCGTTTTAATCAGTTTAAACATACTCTTATT
* ** * * * * *
14824305 CAACAATCAT-TCCCGAATTCGAAAAT-ATATTTGAT-A---TAAATATACTCTTATT
1 CAAAAAT-ATAT-TTG-ATAC--AAGTCGT-TTTAATCAGTTTAAACATACTCTTATT
14824357 CAAAAATATATTTGATACAAGTCGTTTTAATCAGTTTAAACATACTCTTATT
1 CAAAAATATATTTGATACAAGTCGTTTTAATCAGTTTAAACATACTCTTATT
14824409 CAA
1 CAA
14824412 CAATCATTCC
Statistics
Matches: 79, Mismatches: 16, Indels: 24
0.66 0.13 0.20
Matches are distributed among these distances:
48 8 0.10
49 2 0.03
50 3 0.04
51 3 0.04
52 47 0.59
53 3 0.04
54 3 0.04
55 2 0.03
56 8 0.10
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (52 bp):
CAAAAATATATTTGATACAAGTCGTTTTAATCAGTTTAAACATACTCTTATT
Found at i:14832027 original size:26 final size:26
Alignment explanation
Indices: 14831998--14832063 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
14831988 AAGAATTTTT
* *
14831998 AAATTATTTTTACTATTTTAAATA-TA
1 AAATTATTTTTA-TATGTTAAAAATTA
14832024 AAA-TATTTTTATATGTTAAAAATTA
1 AAATTATTTTTATATGTTAAAAATTA
* *
14832049 AAATTAATTATATAT
1 AAATTATTTTTATAT
14832064 TAAATAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 9 0.26
25 13 0.38
26 12 0.35
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
AAATTATTTTTATATGTTAAAAATTA
Found at i:14832042 original size:24 final size:24
Alignment explanation
Indices: 14831997--14832076 Score: 72
Period size: 24 Copynumber: 3.3 Consensus size: 24
14831987 CAAGAATTTT
* *
14831997 TAAATTATTTTTACTATTTTAAATA
1 TAAAATATTTTTA-TATATTAAATA
* *
14832022 TAAAATATTTTTATATGTTAAAAA
1 TAAAATATTTTTATATATTAAATA
**
14832046 TTAAAAT-TAATTATATATTAAATA
1 -TAAAATATTTTTATATATTAAATA
*
14832070 AAAAATA
1 TAAAATA
14832077 GAATTTAGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
23 5 0.11
24 22 0.49
25 18 0.40
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (24 bp):
TAAAATATTTTTATATATTAAATA
Found at i:14838445 original size:23 final size:24
Alignment explanation
Indices: 14838419--14838464 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
14838409 AAACAGGAAG
14838419 TAAAAAAATTAGT-TAATGATATT
1 TAAAAAAATTAGTATAATGATATT
* * *
14838442 TAAATAATTTAGTATAATTATAT
1 TAAAAAAATTAGTATAATGATAT
14838465 AGAATATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (24 bp):
TAAAAAAATTAGTATAATGATATT
Found at i:14851476 original size:18 final size:18
Alignment explanation
Indices: 14851435--14851483 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
14851425 TTTTATAATG
* *
14851435 TTTTAATATTTTT-AATA
1 TTTTTATATTTTTAAAGA
14851452 TTATTTATATTTTTAAAGA
1 TT-TTTATATTTTTAAAGA
14851471 TTTTTA-ATTTTTA
1 TTTTTATATTTTTA
14851484 TAGTTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 9 0.32
18 14 0.50
19 5 0.18
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTTTATATTTTTAAAGA
Found at i:14851480 original size:17 final size:16
Alignment explanation
Indices: 14851421--14851483 Score: 54
Period size: 18 Copynumber: 3.6 Consensus size: 16
14851411 ATTTTTTATA
*
14851421 TAATTTTTATAATGTTT
1 TAATTTTTAAAAT-TTT
*
14851438 TAATATTTTTAATATTATT
1 T-A-ATTTTTAAAATT-TT
14851457 TATATTTTTAAAGATTTT
1 TA-ATTTTTAAA-ATTTT
14851475 TAATTTTTA
1 TAATTTTTA
14851484 TAGTTAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 8 0.21
18 16 0.41
19 15 0.38
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
TAATTTTTAAAATTTT
Found at i:14855783 original size:24 final size:22
Alignment explanation
Indices: 14855756--14855807 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
14855746 CTGGTTGCCG
14855756 TAAATATG-TTTTGATATAACAAAT
1 TAAA-ATGTTTTTGA-ATAAC-AAT
*
14855780 TAAAGTGTTTTTGAATAACAAT
1 TAAAATGTTTTTGAATAACAAT
14855802 TAAAAT
1 TAAAAT
14855808 TGACAAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 8 0.32
23 7 0.28
24 10 0.40
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (22 bp):
TAAAATGTTTTTGAATAACAAT
Found at i:14856244 original size:15 final size:15
Alignment explanation
Indices: 14856218--14856258 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
14856208 ATGGATTCAC
*
14856218 AATTACTAATTAATTT
1 AATTA-TAATTAATTA
14856234 AATTATAATTAATTA
1 AATTATAATTAATTA
*
14856249 AATAATAATT
1 AATTATAATT
14856259 TAAAAAACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
AATTATAATTAATTA
Found at i:14858046 original size:8 final size:8
Alignment explanation
Indices: 14858033--14858068 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
14858023 ACACTTGTTT
14858033 TATTTTAA
1 TATTTTAA
14858041 TATTTTAA
1 TATTTTAA
14858049 TATTTTAA
1 TATTTTAA
14858057 T-TATTTAA
1 TAT-TTTAA
14858065 TATT
1 TATT
14858069 GCACTTTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 1 0.04
8 24 0.92
9 1 0.04
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATTTTAA
Found at i:14861781 original size:13 final size:13
Alignment explanation
Indices: 14861765--14861796 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14861755 AAATATTGTA
14861765 AAAAATACTTTTG
1 AAAAATACTTTTG
*
14861778 AAAAATATTTTTG
1 AAAAATACTTTTG
14861791 AAAAAT
1 AAAAAT
14861797 TTAGATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (13 bp):
AAAAATACTTTTG
Found at i:14874079 original size:30 final size:31
Alignment explanation
Indices: 14874043--14874107 Score: 89
Period size: 30 Copynumber: 2.1 Consensus size: 31
14874033 ACGTGTAATA
* *
14874043 TTATATAT-AAATTTTTAATTT-TTTTCATTT
1 TTATATATGAAA-TTTTAATTTAATTTAATTT
14874073 TTATATATGAAATTTTAATTTAATTTAATTT
1 TTATATATGAAATTTTAATTTAATTTAATTT
14874104 TTAT
1 TTAT
14874108 TAATTACTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 17 0.55
31 14 0.45
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (31 bp):
TTATATATGAAATTTTAATTTAATTTAATTT
Found at i:14877657 original size:15 final size:16
Alignment explanation
Indices: 14877633--14877667 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
14877623 GAAAAAGAAA
*
14877633 TTATATAAAAATGTAT
1 TTATATAAAAATATAT
14877649 TTATA-AAAAATATAT
1 TTATATAAAAATATAT
14877664 TTAT
1 TTAT
14877668 CTTTTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (16 bp):
TTATATAAAAATATAT
Found at i:14877717 original size:16 final size:16
Alignment explanation
Indices: 14877670--14877720 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
14877660 ATATTTATCT
14877670 TTTAAATTAATAATAG
1 TTTAAATTAATAATAG
** * *
14877686 TTT-TTTTTATGGATAG
1 TTTAAATTAAT-AATAG
14877702 TTTAAATTAATAATAG
1 TTTAAATTAATAATAG
14877718 TTT
1 TTT
14877721 TGTTTCAAAG
Statistics
Matches: 25, Mismatches: 8, Indels: 4
0.68 0.22 0.11
Matches are distributed among these distances:
15 4 0.16
16 17 0.68
17 4 0.16
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (16 bp):
TTTAAATTAATAATAG
Found at i:14885742 original size:27 final size:24
Alignment explanation
Indices: 14885682--14885803 Score: 101
Period size: 27 Copynumber: 5.0 Consensus size: 24
14885672 NNNNNNNNNN
14885682 TTTTGTATGAATATTGT-A-ATTT
1 TTTTGTATGAATATTGTAATATTT
14885704 TTTTGTATGAATATTGTAATATTAT
1 TTTTGTATGAATATTGTAATATT-T
* **
14885729 AATTTTGTATGAATATTGTAATGTCG
1 --TTTTGTATGAATATTGTAATATTT
* * *
14885755 GTATATATTGTAATATTGT-A-A-TT
1 TTTTGTA-TG-AATATTGTAATATTT
14885778 TTTTGTATGAATATTGTAATTATTT
1 TTTTGTATGAATATTGTAA-TATTT
14885803 T
1 T
14885804 ATAATTAATT
Statistics
Matches: 77, Mismatches: 12, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
21 8 0.10
22 20 0.26
23 5 0.06
24 8 0.10
25 7 0.09
26 8 0.10
27 21 0.27
ACGTcount: A:0.30, C:0.01, G:0.14, T:0.55
Consensus pattern (24 bp):
TTTTGTATGAATATTGTAATATTT
Found at i:14885797 original size:47 final size:46
Alignment explanation
Indices: 14885682--14885797 Score: 144
Period size: 47 Copynumber: 2.4 Consensus size: 46
14885672 NNNNNNNNNN
* **
14885682 TTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGTAATATTATAA
1 TTTTGTATGAATATTGTAA--TGTCGGTAT-AATATTGTAATATTATAA
*
14885731 TTTTGTATGAATATTGTAATGTCGGTAT-ATATTGTAATATTGTAA
1 TTTTGTATGAATATTGTAATGTCGGTATAATATTGTAATATTATAA
14885776 TTTTTTGTATGAATATTGTAAT
1 --TTTTGTATGAATATTGTAAT
14885798 TATTTTATAA
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
45 16 0.26
47 26 0.43
49 19 0.31
ACGTcount: A:0.31, C:0.01, G:0.15, T:0.53
Consensus pattern (46 bp):
TTTTGTATGAATATTGTAATGTCGGTATAATATTGTAATATTATAA
Found at i:14885868 original size:19 final size:19
Alignment explanation
Indices: 14885846--14885883 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14885836 TATAAATTTA
*
14885846 TTAGTAACTTATTAGTAAT
1 TTAGTAACTTATTACTAAT
*
14885865 TTAGTAATTTATTACTAAT
1 TTAGTAACTTATTACTAAT
14885884 AAATTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (19 bp):
TTAGTAACTTATTACTAAT
Found at i:14886141 original size:27 final size:28
Alignment explanation
Indices: 14886103--14886179 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 28
14886093 CCGACTCGGC
*
14886103 CCATTGGCGCCTCTCAGAAT-GGCACCA
1 CCATTGGCGCCTCCCAGAATAGGCACCA
*
14886130 CCATTGGCGCCTCCCAG-GTAGGCACCA
1 CCATTGGCGCCTCCCAGAATAGGCACCA
14886157 CCATTGGCGCCTCCCAG-ATAGGC
1 CCATTGGCGCCTCCCAGAATAGGC
14886180 GCCAATACTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 1 0.02
27 45 0.98
ACGTcount: A:0.19, C:0.39, G:0.25, T:0.17
Consensus pattern (28 bp):
CCATTGGCGCCTCCCAGAATAGGCACCA
Found at i:14886970 original size:23 final size:22
Alignment explanation
Indices: 14886927--14886970 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
14886917 GAAATCATGA
*
14886927 TAAAAAATGAAATTCTAAATTC
1 TAAAAAATGAAATTATAAATTC
* *
14886949 TAAATAAATTAAATTATTAATT
1 TAAA-AAATGAAATTATAAATT
14886971 TTTTATATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (22 bp):
TAAAAAATGAAATTATAAATTC
Found at i:14889471 original size:3 final size:3
Alignment explanation
Indices: 14889463--14889504 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
14889453 CATCTTCGCT
* * *
14889463 ATC ATC ATC ATC ATC ATC ATC TTC ATC TTC ATC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
14889505 CTCTGAGGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.40
Consensus pattern (3 bp):
ATC
Found at i:14901138 original size:16 final size:18
Alignment explanation
Indices: 14901112--14901146 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
14901102 AAATAAAAAC
14901112 TTAATATAAAAA-TTATA
1 TTAATATAAAAATTTATA
14901129 TTAA-ATAAAAATTTATA
1 TTAATATAAAAATTTATA
14901146 T
1 T
14901147 ATCACATGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTAATATAAAAATTTATA
Found at i:14901695 original size:317 final size:318
Alignment explanation
Indices: 14901107--14901746 Score: 1273
Period size: 317 Copynumber: 2.0 Consensus size: 318
14901097 AAACAAAATA
14901107 AAAACTTAATATAAAAATTATATTAAATAAAAATTTATATATCACATGCATAAATTTAATAATTC
1 AAAACTTAATATAAAAATTATATTAAATAAAAATTTATATATCACATGCATAAATTTAATAATTC
14901172 ACAATTCGGAGGTGCAAATAATAAATTCAGTGTACAATCGGTAGCCAATTTCCACGACAATGATG
66 ACAATTCGGAGGTGCAAATAATAAATTCAGTGTACAATCGGTAGCCAATTTCCACGACAATGATG
14901237 CAACTAGCAAAACGGTGTCGAAATCTAGTATATGGGTCTAATGCTGATTCTGAAACGACAATTGG
131 CAACTAGCAAAACGGTGTCGAAATCTAGTATATGGGTCTAATGCTGATTCTGAAACGACAATTGG
14901302 GGAAAAATGAATGATGGCATAATAAAACTAATACCGACCAACCGAAAGGAGAGAATAAACAGGGA
196 GGAAAAATGAATGATGGCATAATAAAACTAATACCGACCAACCGAAAGGAGAGAATAAACAGGGA
14901367 ATTTCCTAAAAAAGAGTGTGTGCCTCAGCCTCTAACCTCAACATGTGTTATATTTAAC
261 ATTTCCTAAAAAAGAGTGTGTGCCTCAGCCTCTAACCTCAACATGTGTTATATTTAAC
14901425 AAAACTTAATAT-AAAATTATATTAAATAAAAATTTATATATCACATGCATAAATTTAATAATTC
1 AAAACTTAATATAAAAATTATATTAAATAAAAATTTATATATCACATGCATAAATTTAATAATTC
14901489 ACAATTCGGAGGTGCAAATAATAAATTCAGTGTACAATCGGTAGCCAATTTCCACGACAATGATG
66 ACAATTCGGAGGTGCAAATAATAAATTCAGTGTACAATCGGTAGCCAATTTCCACGACAATGATG
14901554 CAACTAGCAAAACGGTGTCGAAATCTAGTATATGGGTCTAATGCTGATTCTGAAACGACAATTGG
131 CAACTAGCAAAACGGTGTCGAAATCTAGTATATGGGTCTAATGCTGATTCTGAAACGACAATTGG
14901619 GGAAAAATGAATGATGGCATAATAAAACTAATACCGACCAACCGAAAGGAGAGAATAAACAGGGA
196 GGAAAAATGAATGATGGCATAATAAAACTAATACCGACCAACCGAAAGGAGAGAATAAACAGGGA
14901684 ATTTCCTAAAAAAGAGTGTGTGCCTCAGCCTCTAACCTCAACATGTGTTATATTTAAC
261 ATTTCCTAAAAAAGAGTGTGTGCCTCAGCCTCTAACCTCAACATGTGTTATATTTAAC
14901742 AAAAC
1 AAAAC
14901747 AAACATTCCT
Statistics
Matches: 322, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
317 310 0.96
318 12 0.04
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (318 bp):
AAAACTTAATATAAAAATTATATTAAATAAAAATTTATATATCACATGCATAAATTTAATAATTC
ACAATTCGGAGGTGCAAATAATAAATTCAGTGTACAATCGGTAGCCAATTTCCACGACAATGATG
CAACTAGCAAAACGGTGTCGAAATCTAGTATATGGGTCTAATGCTGATTCTGAAACGACAATTGG
GGAAAAATGAATGATGGCATAATAAAACTAATACCGACCAACCGAAAGGAGAGAATAAACAGGGA
ATTTCCTAAAAAAGAGTGTGTGCCTCAGCCTCTAACCTCAACATGTGTTATATTTAAC
Found at i:14903475 original size:20 final size:20
Alignment explanation
Indices: 14903447--14903487 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
14903437 TTAATGCGGT
*
14903447 CTAATCGAACCAGACCCGGA
1 CTAACCGAACCAGACCCGGA
14903467 CTAACCGAACCAGACCCGGA
1 CTAACCGAACCAGACCCGGA
14903487 C
1 C
14903488 CGACCAGACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.39, G:0.20, T:0.07
Consensus pattern (20 bp):
CTAACCGAACCAGACCCGGA
Found at i:14908485 original size:18 final size:18
Alignment explanation
Indices: 14908462--14908500 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14908452 GTCGGATGTA
*
14908462 AAATAAAAGTGAAGTATT
1 AAATAAAACTGAAGTATT
* *
14908480 AAATAATACTTAAGTATT
1 AAATAAAACTGAAGTATT
14908498 AAA
1 AAA
14908501 AAGATGGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (18 bp):
AAATAAAACTGAAGTATT
Found at i:14908783 original size:2 final size:2
Alignment explanation
Indices: 14908776--14908904 Score: 258
Period size: 2 Copynumber: 64.5 Consensus size: 2
14908766 TAATCTCCCC
14908776 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14908818 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14908860 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14908902 AT A
1 AT A
14908905 GGAGTATCCT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 127 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14910198 original size:2 final size:2
Alignment explanation
Indices: 14910191--14910216 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14910181 CATGGAGTTA
14910191 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14910217 GAGATTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14911004 original size:83 final size:85
Alignment explanation
Indices: 14910868--14911043 Score: 329
Period size: 83 Copynumber: 2.1 Consensus size: 85
14910858 ATTTTTTACA
*
14910868 ATTTTCTATTAATTAATAATAATTTTTTTTAAAAAAAACTATATACTTTTATTTTATTAATTTAT
1 ATTTTGTATTAATTAATAATAATTTTTTTTAAAAAAAACTATATACTTTTATTTTATTAATTTAT
14910933 ATGTATTTGTAATTATTATG
66 ATGTATTTGTAATTATTATG
14910953 ATTTTGTA-TAATTAATAA-AATTTTTTTTAAAAAAAACTATATACTTTTATTTTATTAATTTAT
1 ATTTTGTATTAATTAATAATAATTTTTTTTAAAAAAAACTATATACTTTTATTTTATTAATTTAT
14911016 ATGTATTTGTAATTATTATG
66 ATGTATTTGTAATTATTATG
14911036 ATTTTGTA
1 ATTTTGTA
14911044 ATATTCTTTT
Statistics
Matches: 90, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
83 73 0.81
84 10 0.11
85 7 0.08
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (85 bp):
ATTTTGTATTAATTAATAATAATTTTTTTTAAAAAAAACTATATACTTTTATTTTATTAATTTAT
ATGTATTTGTAATTATTATG
Found at i:14911956 original size:21 final size:22
Alignment explanation
Indices: 14911932--14911972 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14911922 CAGTATAACT
*
14911932 AATTTTATGTT-AAAACACATA
1 AATTTGATGTTCAAAACACATA
*
14911953 AATTTGATTTTCAAAACACA
1 AATTTGATGTTCAAAACACA
14911973 ATAATAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (22 bp):
AATTTGATGTTCAAAACACATA
Found at i:14912134 original size:24 final size:25
Alignment explanation
Indices: 14912098--14912144 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
14912088 TAATTTTTTT
*
14912098 AATTTTTATAATTTTTAAAAATACA
1 AATTTTGATAATTTTTAAAAATACA
*
14912123 AATTTTGA-AATTTTTATAAATA
1 AATTTTGATAATTTTTAAAAATA
14912145 TTTTGAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (25 bp):
AATTTTGATAATTTTTAAAAATACA
Found at i:14912155 original size:19 final size:20
Alignment explanation
Indices: 14912124--14912173 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
14912114 AAAAATACAA
14912124 ATTTTGAAATTTTT-ATAAA-T
1 ATTTTG-AATTTTTGA-AAATT
14912144 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
14912164 ATTTTGAATT
1 ATTTTGAATT
14912174 ATTTTGTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:14922947 original size:105 final size:106
Alignment explanation
Indices: 14922815--14923026 Score: 417
Period size: 105 Copynumber: 2.0 Consensus size: 106
14922805 TCAATTTACA
14922815 AAAATATAAAATAAATTATTTGTTTTCTCAAATATTTATTTTTAAAAATATAATCCTTATTATGT
1 AAAATATAAAATAAATTATTTGTTTTCTCAAATATTTATTTTTAAAAATATAATCCTTATTATGT
14922880 ATGTATAAATAAAATTTTAAATATGAATTTGTGGGATAAAT
66 ATGTATAAATAAAATTTTAAATATGAATTTGTGGGATAAAT
14922921 AAAATAT-AAATAAATTATTTGTTTTCTCAAATATTTATTTTTAAAAATATAATCCTTATTATGT
1 AAAATATAAAATAAATTATTTGTTTTCTCAAATATTTATTTTTAAAAATATAATCCTTATTATGT
14922985 ATGTATAAATAAAATTTTAAATATGAATTTGTGGGATAAAT
66 ATGTATAAATAAAATTTTAAATATGAATTTGTGGGATAAAT
14923026 A
1 A
14923027 TAGGATGAAA
Statistics
Matches: 106, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
105 99 0.93
106 7 0.07
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (106 bp):
AAAATATAAAATAAATTATTTGTTTTCTCAAATATTTATTTTTAAAAATATAATCCTTATTATGT
ATGTATAAATAAAATTTTAAATATGAATTTGTGGGATAAAT
Found at i:14931276 original size:49 final size:49
Alignment explanation
Indices: 14931043--14931292 Score: 193
Period size: 49 Copynumber: 5.1 Consensus size: 49
14931033 TAGGGCCACA
* * * * * *
14931043 TTATCACCTTCTGTAAGCC-TCCCCCATACGTCTGGGAGTAGGGCCAAT
1 TTATTACCTTCCGTAAGCCTTCCCCCATACGTCTGGGAGCAAGGTCACT
* * * * ** * *
14931091 TTATTGCTTTCCATAAGCCTTCCCTCATGTGTTTGGAAGCAAGGTCACT
1 TTATTACCTTCCGTAAGCCTTCCCCCATACGTCTGGGAGCAAGGTCACT
* * * * *
14931140 TTATTACCTTCAGTAAGCCTCCCCCCATAAGTCTAGGAG-TAGGTC-CGGT
1 TTATTACCTTCCGTAAGCCTTCCCCCATACGTCTGGGAGCAAGGTCAC--T
* * * *
14931189 TTATTGCTTTCCATAAGCCTTCCCCCATATG-CTAGGGAGCAAGGTCACT
1 TTATTACCTTCCGTAAGCCTTCCCCCATACGTCT-GGGAGCAAGGTCACT
* * * * *
14931238 TTATTACCTTCCGTAAGCCTTTCTCCATGCGTCTGGGAGTAAGGTCATT
1 TTATTACCTTCCGTAAGCCTTCCCCCATACGTCTGGGAGCAAGGTCACT
14931287 TTATTA
1 TTATTA
14931293 TTTATTGCAA
Statistics
Matches: 152, Mismatches: 43, Indels: 13
0.73 0.21 0.06
Matches are distributed among these distances:
47 1 0.01
48 21 0.14
49 122 0.80
50 7 0.05
51 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (49 bp):
TTATTACCTTCCGTAAGCCTTCCCCCATACGTCTGGGAGCAAGGTCACT
Found at i:14931277 original size:98 final size:98
Alignment explanation
Indices: 14931043--14931291 Score: 313
Period size: 98 Copynumber: 2.6 Consensus size: 98
14931033 TAGGGCCACA
* * *
14931043 TTATCACCTTCTGTAAGCC-TCCCCCATACGTCTGGGAGTAGGGCCAATTTATTGCTTTCCATAA
1 TTATTACCTTCAGTAAGCCTTCCCCCATACGTCTGGGAGTAGGTCCAATTTATTGCTTTCCATAA
* * * *
14931107 GCCTTCCCTCATGTGTTTGGAAGCAAGGTCACT
66 GCCTTCCCCCATATGCTAGGAAGCAAGGTCACT
* * * **
14931140 TTATTACCTTCAGTAAGCCTCCCCCCATAAGTCTAGGAGTAGGTCCGGTTTATTGCTTTCCATAA
1 TTATTACCTTCAGTAAGCCTTCCCCCATACGTCTGGGAGTAGGTCCAATTTATTGCTTTCCATAA
*
14931205 GCCTTCCCCCATATGCTAGGGAGCAAGGTCACT
66 GCCTTCCCCCATATGCTAGGAAGCAAGGTCACT
* * * * *
14931238 TTATTACCTTCCGTAAGCCTTTCTCCATGCGTCTGGGAGTAAGGT-CATTTTATT
1 TTATTACCTTCAGTAAGCCTTCCCCCATACGTCTGGGAGT-AGGTCCAATTTATT
14931292 ATTTATTGCA
Statistics
Matches: 128, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
97 17 0.13
98 107 0.84
99 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (98 bp):
TTATTACCTTCAGTAAGCCTTCCCCCATACGTCTGGGAGTAGGTCCAATTTATTGCTTTCCATAA
GCCTTCCCCCATATGCTAGGAAGCAAGGTCACT
Found at i:14938326 original size:21 final size:23
Alignment explanation
Indices: 14938293--14938336 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
14938283 TTTAAAATTG
*
14938293 GAAAAAAGAAAAGT-TATTTAAA
1 GAAAAAAGAAAAGTATAATTAAA
*
14938315 GAAAAAA-TAAAGTATAATTAAA
1 GAAAAAAGAAAAGTATAATTAAA
14938337 CTGAAGATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (23 bp):
GAAAAAAGAAAAGTATAATTAAA
Found at i:14942227 original size:66 final size:66
Alignment explanation
Indices: 14942113--14942245 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 66
14942103 AATCATACAC
* * *
14942113 TGAGTATTGAATATTAAGTGATGCTAGTATAATTCAAGTTCAAGTTATATTAGGATTAAATTAAA
1 TGAGTATTGAATACTAAGTGATGCTAGTATAATTCAAGCTCAAGTTATATTAAGATTAAATTAAA
14942178 G
66 G
* *
14942179 TGAGTATTGAATACTAAGTGATGCTGGTATAATTCAAGCTCAATTTATATTAAGATTAAATTAAA
1 TGAGTATTGAATACTAAGTGATGCTAGTATAATTCAAGCTCAAGTTATATTAAGATTAAATTAAA
14942244 G
66 G
14942245 T
1 T
14942246 AAATACATAA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.39, C:0.06, G:0.17, T:0.38
Consensus pattern (66 bp):
TGAGTATTGAATACTAAGTGATGCTAGTATAATTCAAGCTCAAGTTATATTAAGATTAAATTAAA
G
Found at i:14945624 original size:28 final size:26
Alignment explanation
Indices: 14945583--14945635 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
14945573 AAAGTTATTT
*
14945583 TTTTTATTTAAGTCACTAGGCTAACAAGG
1 TTTTTATTAAAGT--CT-GGCTAACAAGG
14945612 TTTTT-TTAAAGTCTGGCTAACAAG
1 TTTTTATTAAAGTCTGGCTAACAAG
14945636 CTCCAAGCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 10 0.43
26 2 0.09
28 6 0.26
29 5 0.22
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (26 bp):
TTTTTATTAAAGTCTGGCTAACAAGG
Found at i:14947794 original size:24 final size:24
Alignment explanation
Indices: 14947767--14947815 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14947757 ACCTAATCTG
14947767 AATAATGGCATATTATTACGTAAA
1 AATAATGGCATATTATTACGTAAA
14947791 AATAATGGCATATTATTACGTAAA
1 AATAATGGCATATTATTACGTAAA
14947815 A
1 A
14947816 GGGTGAGGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.33
Consensus pattern (24 bp):
AATAATGGCATATTATTACGTAAA
Found at i:14952707 original size:30 final size:30
Alignment explanation
Indices: 14952673--14952731 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
14952663 ACCTAATTTT
*
14952673 TTTTAAAAATTTAAAAATTTAATTTAATTG
1 TTTTAAAAATTTAAAAATTTAATTAAATTG
* ** *
14952703 TTTTAGAGTTTTAATAATTTAATTAAATT
1 TTTTAAAAATTTAAAAATTTAATTAAATT
14952732 AAACTACAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (30 bp):
TTTTAAAAATTTAAAAATTTAATTAAATTG
Found at i:14954235 original size:126 final size:126
Alignment explanation
Indices: 14954010--14954426 Score: 672
Period size: 126 Copynumber: 3.3 Consensus size: 126
14954000 TTGTTAATTT
* * * **
14954010 AAAGAAGCTCCCACGTGGATGCACTTTTGCTGCAGTAGCTCTTGAAAAAATAATTTTAAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
14954075 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
14954136 AAAGAAGCTCCCACGTTGACGCGCTATTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
* * * *
14954201 GTTTCCGAGCAAATAATGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGTAGAAGTACTA
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
14954262 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTATAGTAGCTCTTGAAAAAATATTTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
* ** * *
14954327 GTTTCTAAGCAAATAGTGTCAAAAACGCTTTAATTAGGATGCTTTATCAGCAGAAATACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
14954388 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
14954427 GCATGTTTGG
Statistics
Matches: 266, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 266 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:14958119 original size:18 final size:18
Alignment explanation
Indices: 14958093--14958135 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14958083 GACTAGAAAA
* * *
14958093 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
14958111 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
14958129 AGGATAC
1 AGGATAC
14958136 GGACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:14959976 original size:11 final size:11
Alignment explanation
Indices: 14959962--14960007 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
14959952 TCTTTTAAAT
14959962 AGGAATTTGAG
1 AGGAATTTGAG
14959973 AGGAATTTGAG
1 AGGAATTTGAG
14959984 A-GAATATT-AG
1 AGGAAT-TTGAG
*
14959994 AGAGAAATTGAG
1 AG-GAATTTGAG
14960006 AG
1 AG
14960008 AAAAGATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.23
11 16 0.53
12 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24
Consensus pattern (11 bp):
AGGAATTTGAG
Found at i:14960006 original size:10 final size:10
Alignment explanation
Indices: 14959968--14960010 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
14959958 AAATAGGAAT
*
14959968 TTGAGAGGAAT
1 TTGAGA-GAAA
14959979 TTGAGAGAATA
1 TTGAGAGAA-A
14959990 TTAGAGAGAAA
1 TT-GAGAGAAA
14960001 TTGAGAGAAA
1 TTGAGAGAAA
14960011 AGATTTAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 11 0.38
11 11 0.38
12 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:14967261 original size:21 final size:20
Alignment explanation
Indices: 14967210--14967276 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
14967200 GAGCAATTTA
* *
14967210 TTTATTTTTCTTTTATGTTC
1 TTTATTTTTCTTTTTTTTTC
**
14967230 TTTTAACTTTCTTTATTTTTTC
1 -TTTATTTTTCTTT-TTTTTTC
*
14967252 TTTATTTTTCATTCTTTTTTGC
1 TTTATTTTTC-TT-TTTTTTTC
14967274 TTT
1 TTT
14967277 TCCCTTTGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
21 19 0.53
22 16 0.44
23 1 0.03
ACGTcount: A:0.10, C:0.12, G:0.03, T:0.75
Consensus pattern (20 bp):
TTTATTTTTCTTTTTTTTTC
Found at i:14977626 original size:20 final size:20
Alignment explanation
Indices: 14977601--14977638 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14977591 ATTTTATTTT
14977601 ATAAAATTTAAAAATTTATA
1 ATAAAATTTAAAAATTTATA
14977621 ATAAAATTTAAAAATTTA
1 ATAAAATTTAAAAATTTA
14977639 GAAAGAGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAAAATTTAAAAATTTATA
Found at i:14994350 original size:21 final size:20
Alignment explanation
Indices: 14994325--14994380 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
14994315 CTTAGATTTT
*
14994325 TATATTATTTATTTATATAAA
1 TATATTATTTAATTATA-AAA
* * *
14994346 TATATAAATTAATTATAAAG
1 TATATTATTTAATTATAAAA
*
14994366 TATATTATTAAATTA
1 TATATTATTTAATTA
14994381 GTTATACTAT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TATATTATTTAATTATAAAA
Found at i:14994375 original size:19 final size:20
Alignment explanation
Indices: 14994325--14994376 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
14994315 CTTAGATTTT
*
14994325 TATATTATTTATTTATATAAA
1 TATATTA-TTAATTATATAAA
* *
14994346 TATATAAATTAATTATA-AAG
1 TATAT-TATTAATTATATAAA
14994366 TATATTATTAA
1 TATATTATTAA
14994377 ATTAGTTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 5 0.19
20 7 0.27
21 13 0.50
22 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TATATTATTAATTATATAAA
Found at i:14995025 original size:16 final size:15
Alignment explanation
Indices: 14995004--14995043 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 15
14994994 TTATGTGTAT
14995004 GGTAAGTAAATAATAA
1 GGTAAGTAAAT-ATAA
14995020 GGTAAGTGAAATATAA
1 GGTAAGT-AAATATAA
14995036 GGTAAGTA
1 GGTAAGTA
14995044 TTATTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.04
16 18 0.78
17 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (15 bp):
GGTAAGTAAATATAA
Found at i:14995157 original size:36 final size:37
Alignment explanation
Indices: 14995095--14995192 Score: 128
Period size: 36 Copynumber: 2.6 Consensus size: 37
14995085 ATGTGTGGAA
*
14995095 TTGAAATGAATAT-TGACTTGAAAATGAAAAAGTAAAT
1 TTGAATTGAAT-TGTGACTTGAAAATGAAAAAGTAAAT
*
14995132 TTGAATTGAATTGTGA-TTGAAAATGAAAAAGTGAAT
1 TTGAATTGAATTGTGACTTGAAAATGAAAAAGTAAAT
* *
14995168 TTGAATTGAAATGTGAATTTGAAAA
1 TTGAATTGAATTGTG-ACTTGAAAA
14995193 GTATGTGTTG
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
36 34 0.62
37 14 0.25
38 7 0.13
ACGTcount: A:0.47, C:0.01, G:0.19, T:0.33
Consensus pattern (37 bp):
TTGAATTGAATTGTGACTTGAAAATGAAAAAGTAAAT
Found at i:14995183 original size:18 final size:18
Alignment explanation
Indices: 14995129--14995190 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
14995119 TGAAAAAGTA
*
14995129 AATTTGAATTGAATTGTG
1 AATTTGAATTGAAATGTG
* *
14995147 -A-TTGAAAATGAAAAAGTG
1 AATTTG-AATTG-AAATGTG
14995165 AATTTGAATTGAAATGTG
1 AATTTGAATTGAAATGTG
14995183 AATTTGAA
1 AATTTGAA
14995191 AAGTATGTGT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
16 3 0.09
17 5 0.14
18 19 0.54
19 5 0.14
20 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (18 bp):
AATTTGAATTGAAATGTG
Found at i:14995455 original size:20 final size:20
Alignment explanation
Indices: 14995373--14995459 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 20
14995363 AGCCTTGCCG
* *
14995373 ATCAAGCACTTTATGTGTCAT
1 ATCAGGCAC-TTATGTGTCGT
*
14995394 ACATCAAGCACTTTATGTGTCGT
1 --ATCAGGCAC-TTATGTGTCGT
* **
14995417 ATCAGACACCTCGTGTGTCGT
1 ATCAGGCA-CTTATGTGTCGT
*
14995438 TTCAGGCACTTATGTGTCGT
1 ATCAGGCACTTATGTGTCGT
14995458 AT
1 AT
14995460 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
20 11 0.21
21 21 0.40
22 1 0.02
23 20 0.38
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.36
Consensus pattern (20 bp):
ATCAGGCACTTATGTGTCGT
Found at i:15003280 original size:15 final size:15
Alignment explanation
Indices: 15003260--15003288 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15003250 ATTTTGTGTG
15003260 ATGTTTTATTATAAA
1 ATGTTTTATTATAAA
15003275 ATGTTTTATTATAA
1 ATGTTTTATTATAA
15003289 GATAATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
ATGTTTTATTATAAA
Found at i:15004714 original size:5 final size:5
Alignment explanation
Indices: 15004704--15004729 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
15004694 TGAGCATTCG
15004704 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
15004730 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:15005623 original size:9 final size:9
Alignment explanation
Indices: 15005606--15005636 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
15005596 TCGAGTTGAT
15005606 TCGAATAAC
1 TCGAATAAC
*
15005615 TCGATTAAC
1 TCGAATAAC
15005624 TCGAATAAC
1 TCGAATAAC
15005633 TCGA
1 TCGA
15005637 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:15007947 original size:14 final size:14
Alignment explanation
Indices: 15007928--15007954 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15007918 TGATTGTTTT
15007928 TAATCTAATTTAAC
1 TAATCTAATTTAAC
15007942 TAATCTAATTTAA
1 TAATCTAATTTAA
15007955 ATACGGACGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:15010444 original size:26 final size:26
Alignment explanation
Indices: 15010408--15010481 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
15010398 ATCAAAAAGG
15010408 GGTTGCTAAGTGCAGATTCCCCGAGC
1 GGTTGCTAAGTGCAGATTCCCCGAGC
*
15010434 GGTTGCTAAGTGCAGATTCCCCGAGG
1 GGTTGCTAAGTGCAGATTCCCCGAGC
**
15010460 GGTTGCTAAGTGTTGATTCCCC
1 GGTTGCTAAGTGCAGATTCCCC
15010482 AAATTATTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.27
Consensus pattern (26 bp):
GGTTGCTAAGTGCAGATTCCCCGAGC
Found at i:15010549 original size:43 final size:41
Alignment explanation
Indices: 15010457--15010605 Score: 133
Period size: 43 Copynumber: 3.6 Consensus size: 41
15010447 AGATTCCCCG
* ** ** *
15010457 AGGGGTTGCTAAGTGTTGATTCCCCAAATTATTGATTCTGA
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATCCTTGATTATGA
*
15010498 AGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCC-CCGTATCCTTGATTATG-A
* *
15010542 AGGGGTTGCTATA-TGCTGATTCCCAGTATCAC-TGAATAT-A
1 AGGGGTTGCTA-AGTGCTGATTCCCCGTATC-CTTGATTATGA
*
15010582 AGTTGGTTGCTAAGTGCTGATTCC
1 AG-GGGTTGCTAAGTGCTGATTCC
15010606 ACCGAGTAAC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
40 4 0.04
41 21 0.23
42 30 0.33
43 31 0.34
44 5 0.05
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.35
Consensus pattern (41 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGTATCCTTGATTATGA
Found at i:15011630 original size:36 final size:36
Alignment explanation
Indices: 15011589--15011969 Score: 762
Period size: 36 Copynumber: 10.6 Consensus size: 36
15011579 TGGGTATATG
15011589 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011625 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011661 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011697 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011733 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011769 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011805 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011841 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011877 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011913 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
1 ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
15011949 ATTTGGCATGAAGTAATGTCA
1 ATTTGGCATGAAGTAATGTCA
15011970 AAACGGGTAT
Statistics
Matches: 345, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 345 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (36 bp):
ATTTGGCATGAAGTAATGTCATGAATGGTTTATGAA
Found at i:15013431 original size:26 final size:27
Alignment explanation
Indices: 15013393--15013453 Score: 97
Period size: 26 Copynumber: 2.3 Consensus size: 27
15013383 TATTTTCTTG
15013393 AAATTTTACCAGGGGTAAAATCATC-A
1 AAATTTTACCAGGGGTAAAATCATCGA
*
15013419 AAATTTTATCAGGGGTAAAATCATCGTA
1 AAATTTTACCAGGGGTAAAATCATCG-A
15013447 AAATTTT
1 AAATTTT
15013454 GCTGAGGGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 24 0.75
28 8 0.25
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (27 bp):
AAATTTTACCAGGGGTAAAATCATCGA
Found at i:15019024 original size:12 final size:13
Alignment explanation
Indices: 15019007--15019039 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
15018997 AACATTATAA
15019007 ATTTTAAACA-AT
1 ATTTTAAACATAT
*
15019019 ATTTTAAGCATAT
1 ATTTTAAACATAT
15019032 ATTTTAAA
1 ATTTTAAA
15019040 AAACCACATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (13 bp):
ATTTTAAACATAT
Found at i:15029011 original size:31 final size:31
Alignment explanation
Indices: 15028973--15029034 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
15028963 AGGCAAATTA
15028973 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
15029004 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
15029035 AAAATTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:15032407 original size:50 final size:50
Alignment explanation
Indices: 15032245--15032454 Score: 267
Period size: 50 Copynumber: 4.2 Consensus size: 50
15032235 GATAACAACA
* * ** * *
15032245 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * ** *
15032296 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTAC-ATGGGACCTCTCATCTCGG
* *
15032347 TGCCAACGCCATGTCCCAAACATGATCTTACATGTGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
*
15032397 TGTCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
15032447 TGCCAACG
1 TGCCAACG
15032455 NNNNNNNNNN
Statistics
Matches: 139, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
50 69 0.50
51 66 0.47
52 4 0.03
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:15037118 original size:15 final size:17
Alignment explanation
Indices: 15037085--15037119 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
15037075 AATTTTAAAA
15037085 AATTTATTATGAGTTAT
1 AATTTATTATGAGTTAT
15037102 AATTTA-TATGA-TTAT
1 AATTTATTATGAGTTAT
15037117 AAT
1 AAT
15037120 CCTTAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 5 0.28
17 6 0.33
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (17 bp):
AATTTATTATGAGTTAT
Found at i:15038063 original size:57 final size:57
Alignment explanation
Indices: 15037964--15038072 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 57
15037954 GATCCTATCC
*
15037964 TGATATAGCCCTCCCGAAGAATATGTGTGAAAAATATCTAGCCTGGACGGGTGATCT
1 TGATATAGCCCTCCCGAAGAATATGTGTGAAAAATATCTAGCCCGGACGGGTGATCT
* *
15038021 TGATATAGCCCTCCTGAAGAATATGTG-G-AAAATGGATTTAGCCCGGACGGGT
1 TGATATAGCCCTCCCGAAGAATATGTGTGAAAAAT--ATCTAGCCCGGACGGGT
15038073 AATCCGAATT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
55 5 0.11
56 1 0.02
57 41 0.87
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (57 bp):
TGATATAGCCCTCCCGAAGAATATGTGTGAAAAATATCTAGCCCGGACGGGTGATCT
Found at i:15041869 original size:18 final size:16
Alignment explanation
Indices: 15041846--15041881 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
15041836 ATAGGGTTTT
15041846 TAAAAGTATATTACAAAA
1 TAAAAGT-TATTA-AAAA
15041864 TAAAAGTTATTAAAAA
1 TAAAAGTTATTAAAAA
15041880 TA
1 TA
15041882 TATTATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (16 bp):
TAAAAGTTATTAAAAA
Found at i:15043814 original size:15 final size:16
Alignment explanation
Indices: 15043794--15043824 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
15043784 AATATTGACA
15043794 TGTTTTTATA-ATTGT
1 TGTTTTTATATATTGT
15043809 TGTTTTTATATATTGT
1 TGTTTTTATATATTGT
15043825 GGTGCCTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.19, C:0.00, G:0.13, T:0.68
Consensus pattern (16 bp):
TGTTTTTATATATTGT
Found at i:15047074 original size:27 final size:26
Alignment explanation
Indices: 15047028--15047089 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 26
15047018 AGAATACTAT
15047028 AAAAT-TTAAAAATGATTAAA-TTGTTA
1 AAAATATTAAAAAT-ATTAAACTT-TTA
15047054 CAAAATATTAAAAAT-TCTAAACTTTTA
1 -AAAATATTAAAAATAT-TAAACTTTTA
15047081 AAAATATTA
1 AAAATATTA
15047090 TAACAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
26 10 0.31
27 12 0.38
28 10 0.31
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (26 bp):
AAAATATTAAAAATATTAAACTTTTA
Found at i:15051425 original size:2 final size:2
Alignment explanation
Indices: 15051420--15051447 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15051410 ATCACACACA
15051420 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15051448 GCGAATTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15066749 original size:11 final size:12
Alignment explanation
Indices: 15066735--15066771 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
15066725 AAAATACCCA
15066735 AAAAAGAAG-AG
1 AAAAAGAAGAAG
15066746 AAAAAGAAGAAG
1 AAAAAGAAGAAG
15066758 AAAAAAGAA-AAG
1 -AAAAAGAAGAAG
15066770 AA
1 AA
15066772 TTTGTGTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 11 0.46
12 5 0.21
13 8 0.33
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (12 bp):
AAAAAGAAGAAG
Found at i:15073757 original size:29 final size:30
Alignment explanation
Indices: 15073715--15073781 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 30
15073705 TGCCAAAGCA
15073715 CTAAAAGTTCCATCAAACAAGATATCTAC-
1 CTAAAAGTTCCATCAAACAAGATATCTACT
15073744 CTAAAAGTTCCATCAAACAAGATATCTACT
1 CTAAAAGTTCCATCAAACAAGATATCTACT
*
15073774 CCAAAAGT
1 CTAAAAGT
15073782 ATATTCATAC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 29 0.81
30 7 0.19
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.24
Consensus pattern (30 bp):
CTAAAAGTTCCATCAAACAAGATATCTACT
Found at i:15078571 original size:19 final size:20
Alignment explanation
Indices: 15078540--15078577 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
15078530 TTAAATTAAC
15078540 AACTAATATGCAATGAAATA
1 AACTAATATGCAATGAAATA
15078560 AACTAA-ATGCAATGAAAT
1 AACTAATATGCAATGAAAT
15078578 GGTTTAGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.55, C:0.11, G:0.11, T:0.24
Consensus pattern (20 bp):
AACTAATATGCAATGAAATA
Found at i:15080774 original size:2 final size:2
Alignment explanation
Indices: 15080767--15080809 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
15080757 CATCAACTAG
* *
15080767 AC AC AC AC AC AC AC AC AT AT AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
15080809 A
1 A
15080810 TATACCATTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.44, G:0.00, T:0.05
Consensus pattern (2 bp):
AC
Found at i:15082271 original size:22 final size:22
Alignment explanation
Indices: 15082222--15082276 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
15082212 CCCGTTTTTA
* * **
15082222 ATTAAAATTAAAATTATTTTTT
1 ATTAAAATTAAAACTAATAGTT
*
15082244 AATAAAATTAAAACTAATAGTT
1 ATTAAAATTAAAACTAATAGTT
15082266 ATTAAAATTAA
1 ATTAAAATTAA
15082277 TTGATAGTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
ATTAAAATTAAAACTAATAGTT
Found at i:15082367 original size:66 final size:59
Alignment explanation
Indices: 15082294--15082413 Score: 197
Period size: 59 Copynumber: 2.1 Consensus size: 59
15082284 TAAAATTATC
* * *
15082294 AAATTAT-TAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTA
1 AAATTATCAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTA
*
15082352 AATTTATCAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTA
1 AAATTATCAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTA
15082411 AAA
1 AAA
15082414 CAAACTTGAT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 6 0.11
59 50 0.89
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (59 bp):
AAATTATCAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTA
Found at i:15082526 original size:23 final size:24
Alignment explanation
Indices: 15082479--15082524 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
15082469 AAATAAACTT
15082479 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACTATTATATTTTA
15082503 AAAATAAAAAA-TATATATATTT
1 AAAATAAAAAACTAT-TATATTT
15082525 AATATTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
AAAATAAAAAACTATTATATTTTA
Found at i:15095448 original size:12 final size:12
Alignment explanation
Indices: 15095431--15095480 Score: 59
Period size: 12 Copynumber: 4.1 Consensus size: 12
15095421 AATAAAAAAA
15095431 TAATAATTTTTT
1 TAATAATTTTTT
15095443 TAATAAAATATTTTT
1 TAAT--AAT-TTTTT
15095458 T-AT-ATTTTTT
1 TAATAATTTTTT
15095468 TAATAATTTTTT
1 TAATAATTTTTT
15095480 T
1 T
15095481 TAAAAAATAC
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
10 6 0.18
11 4 0.12
12 12 0.36
14 5 0.15
15 6 0.18
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
TAATAATTTTTT
Found at i:15095456 original size:15 final size:15
Alignment explanation
Indices: 15095429--15095483 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 15
15095419 TGAATAAAAA
15095429 AATAATAATTTTTTT
1 AATAATAATTTTTTT
*
15095444 AATAA-AATATTTTT
1 AATAATAATTTTTTT
15095458 --T-AT-ATTTTTTT
1 AATAATAATTTTTTT
15095469 AATAAT--TTTTTTT
1 AATAATAATTTTTTT
15095482 AA
1 AA
15095484 AAAATACGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
11 8 0.24
12 1 0.03
13 10 0.29
14 10 0.29
15 5 0.15
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
AATAATAATTTTTTT
Found at i:15095568 original size:27 final size:27
Alignment explanation
Indices: 15095538--15095602 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
15095528 CCTATCAGGT
15095538 AGGCGCCAATGAAGGTGCCTCACAGAG
1 AGGCGCCAATGAAGGTGCCTCACAGAG
*
15095565 AGGCGCCAATGAAGGTGCCTCATAGAG
1 AGGCGCCAATGAAGGTGCCTCACAGAG
15095592 AGGCGCCAATG
1 AGGCGCCAATG
15095603 NNNNNNNNNN
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.29, C:0.25, G:0.34, T:0.12
Consensus pattern (27 bp):
AGGCGCCAATGAAGGTGCCTCACAGAG
Found at i:15096273 original size:19 final size:19
Alignment explanation
Indices: 15096249--15096289 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
15096239 ACAAACACAA
*
15096249 AAATTTATAACATAATCCT
1 AAATTTATAACATAACCCT
15096268 AAATTTATAACATAACCCT
1 AAATTTATAACATAACCCT
15096287 AAA
1 AAA
15096290 CCTGAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATTTATAACATAACCCT
Found at i:15096343 original size:27 final size:27
Alignment explanation
Indices: 15096313--15096380 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
15096303 AGCATTGACA
15096313 CCTCCCAGATAGGCACCACCATTGGCG
1 CCTCCCAGATAGGCACCACCATTGGCG
*
15096340 CCTCCTAGATAGGCACCACCATTGGCG
1 CCTCCCAGATAGGCACCACCATTGGCG
*
15096367 CCTCCCAAATAGGC
1 CCTCCCAGATAGGC
15096381 TCCAATACTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.24, C:0.40, G:0.21, T:0.16
Consensus pattern (27 bp):
CCTCCCAGATAGGCACCACCATTGGCG
Found at i:15100437 original size:16 final size:16
Alignment explanation
Indices: 15100418--15100451 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
15100408 AAAAAAGGAT
15100418 AAAAAAATG-GAAAAAG
1 AAAAAAA-GAGAAAAAG
15100434 AAAAAAAGAGAAAAAG
1 AAAAAAAGAGAAAAAG
15100450 AA
1 AA
15100452 TGATGGTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 16 0.94
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (16 bp):
AAAAAAAGAGAAAAAG
Found at i:15109216 original size:41 final size:40
Alignment explanation
Indices: 15109140--15109216 Score: 100
Period size: 41 Copynumber: 1.9 Consensus size: 40
15109130 TAAAGATTGT
*
15109140 GCATTACCGGCGTTTTTAAGAAAACGCCTCTAAAAAAAAA
1 GCATTACCGGCGTTTTTAAGAAAACGCCTCAAAAAAAAAA
* ** *
15109180 GCATTAGCGGCGTTTTTTGGGAAAACTCCTCAAAAAA
1 GCATTACCGGCG-TTTTTAAGAAAACGCCTCAAAAAA
15109217 CCAAACCCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 11 0.35
41 20 0.65
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (40 bp):
GCATTACCGGCGTTTTTAAGAAAACGCCTCAAAAAAAAAA
Found at i:15109307 original size:41 final size:41
Alignment explanation
Indices: 15109268--15109555 Score: 344
Period size: 41 Copynumber: 7.0 Consensus size: 41
15109258 AGTAGCACCA
* *
15109268 CTAATGCT-GTGGGTTTTAGCGGTGTTTTTAAAAAAGCACCG
1 CTAATGCTCG-GGGTTTTAGCGGCGTTTTTAAAAAAGCGCCG
* * *
15109309 CTAATGCTCGGGGTTTTAGCAGCGTTTTTGATAAAGCGCCG
1 CTAATGCTCGGGGTTTTAGCGGCGTTTTTAAAAAAGCGCCG
* * * * ** *
15109350 CTAATGCTTGGGGTTTTAGGGGCGTTTATGATTAAGCACCG
1 CTAATGCTCGGGGTTTTAGCGGCGTTTTTAAAAAAGCGCCG
* *
15109391 CTAATGCTCGGGGTTTTACCGGCGTTTTTAGAAAAGCGCCG
1 CTAATGCTCGGGGTTTTAGCGGCGTTTTTAAAAAAGCGCCG
* * *
15109432 CTAATGCTCGGGGTTTTAGTGGCGTTTTTAGAAAAGCGCCA
1 CTAATGCTCGGGGTTTTAGCGGCGTTTTTAAAAAAGCGCCG
* *
15109473 CTAATGCTAGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCG
1 CTAATGCTCGGGGTTTTAGCGGCGTTTTTAAAAAAGCGCCG
* * * **
15109514 CTAATGCTCGGGTTTTTAGTGGCTTTTTTATGAAAGCGCCG
1 CTAATGCTCGGGGTTTTAGCGGCGTTTTTAAAAAAGCGCCG
15109555 C
1 C
15109556 AAAAAATATT
Statistics
Matches: 211, Mismatches: 35, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
41 210 1.00
42 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (41 bp):
CTAATGCTCGGGGTTTTAGCGGCGTTTTTAAAAAAGCGCCG
Found at i:15109542 original size:123 final size:123
Alignment explanation
Indices: 15109261--15109555 Score: 380
Period size: 123 Copynumber: 2.4 Consensus size: 123
15109251 TTTTTGGAGT
* * * * *
15109261 AGCACCACTAATGCT-GTGGGTTTTAGCGGTGTTTTTAAAAAAGCACCGCTAATGCTCGGGGTTT
1 AGCACCGCTAATGCTCG-GGGTTTTACCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGGGGTTT
* * * **
15109325 TAGCAGCGTTTTTGATAAAGCGCCGCTAATGCTTGGGGTTTTAGGGGCGTTTATGATTA
65 TAGCAGCGTTTTTGATAAAGCGCCACTAATGCTAGGGGTTTTAGCGGCGTTTATGAAAA
15109384 AGCACCGCTAATGCTCGGGGTTTTACCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGGGGTTTT
1 AGCACCGCTAATGCTCGGGGTTTTACCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGGGGTTTT
** *
15109449 AGTGGCGTTTTTAGA-AAAGCGCCACTAATGCTAGGGGTTTTAGCGGCGTTTTTGAAAA
66 AGCAGCGTTTTT-GATAAAGCGCCACTAATGCTAGGGGTTTTAGCGGCGTTTATGAAAA
* * ** *
15109507 AGCGCCGCTAATGCTCGGGTTTTTAGTGGCTTTTTTATG-AAAGCGCCGC
1 AGCACCGCTAATGCTCGGGGTTTTACCGGCGTTTTTA-GAAAAGCGCCGC
15109556 AAAAAATATT
Statistics
Matches: 151, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
123 147 0.97
124 4 0.03
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (123 bp):
AGCACCGCTAATGCTCGGGGTTTTACCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGGGGTTTT
AGCAGCGTTTTTGATAAAGCGCCACTAATGCTAGGGGTTTTAGCGGCGTTTATGAAAA
Found at i:15113843 original size:10 final size:10
Alignment explanation
Indices: 15113828--15113852 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15113818 AGAAAAATAG
15113828 AAATATTCCA
1 AAATATTCCA
15113838 AAATATTCCA
1 AAATATTCCA
15113848 AAATA
1 AAATA
15113853 GGTATAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (10 bp):
AAATATTCCA
Found at i:15118082 original size:43 final size:43
Alignment explanation
Indices: 15118021--15118103 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
15118011 GAGTTCATTA
* *
15118021 CAAGATTTCATTGATTAAGTAAATGTATTATATCTTTTATCAC
1 CAAGATTTCATTGATTAAGAAAATGCATTATATCTTTTATCAC
* *
15118064 CAAGATTT-ACTTGATTAAGAAAATGCATTGTATGTTTTAT
1 CAAGATTTCA-TTGATTAAGAAAATGCATTATATCTTTTAT
15118104 TACCTTNNNN
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.03
43 34 0.97
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (43 bp):
CAAGATTTCATTGATTAAGAAAATGCATTATATCTTTTATCAC
Found at i:15118958 original size:49 final size:49
Alignment explanation
Indices: 15118894--15118991 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
15118884 CATTTTAATC
* *
15118894 CTTTTCATAATTTCATGACATAGTTCATTCGAATACATACCTTTACTTT
1 CTTTTCATAACTTCATGACATAGTTCATTCGAACACATACCTTTACTTT
* *
15118943 CTTTTTATAACTTCATGACATAGTTCATTCGAACACATACCTTTCCTTT
1 CTTTTCATAACTTCATGACATAGTTCATTCGAACACATACCTTTACTTT
15118992 TCATGCCCGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44
Consensus pattern (49 bp):
CTTTTCATAACTTCATGACATAGTTCATTCGAACACATACCTTTACTTT
Found at i:15119419 original size:45 final size:45
Alignment explanation
Indices: 15119372--15119543 Score: 229
Period size: 45 Copynumber: 3.8 Consensus size: 45
15119362 CCTTTGATTC
* * * * *
15119372 GTGATGCCATAGCATCTTTCA-ACTATGGACTTACTCAATAGAATC
1 GTGATGCCATAACGTCTTTCAGTC-ATGGTCTTACTCAATAGAATA
* * *
15119417 GTGATGTCATAATGTCTTTCAGTCATGGTCTTACTCGATAGAATA
1 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAATA
* *
15119462 GTAATGCCATAACGTTTTTCAGTCATGGTCTTACTCAATAGAATA
1 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAATA
*
15119507 GTGATGCCATAACGTCTTTCAGTCATAGTCTTACTCA
1 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCA
15119544 TTTCTAGTAT
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 109 0.99
46 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (45 bp):
GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAATA
Found at i:15119580 original size:90 final size:90
Alignment explanation
Indices: 15119375--15119584 Score: 246
Period size: 90 Copynumber: 2.3 Consensus size: 90
15119365 TTGATTCGTG
* * * * *
15119375 ATGCCATAGCATCTTTCAACTATGGACTTACTCAATAGAATCGTGATGTCATAATGTCTTTCAGT
1 ATGCCATAGCGTCTTTCAACTATGGTCTTACTCAATAGAATAGTGATGCCATAACGTCTTTCAGT
*
15119440 CATGGTCTTACTCGATAGAATAGTA
66 CATAGTCTTACTCGATAGAATAGTA
* * *
15119465 ATGCCATAACGTTTTTC-AGTCATGGTCTTACTCAATAGAATAGTGATGCCATAACGTCTTTCAG
1 ATGCCATAGCGTCTTTCAACT-ATGGTCTTACTCAATAGAATAGTGATGCCATAACGTCTTTCAG
***
15119529 TCATAGTCTTACTC-AT-TTCTAGTA
65 TCATAGTCTTACTCGATAGAATAGTA
* *
15119553 TGGTGCCATAGTGTCTTTCAACTATGGTCTTA
1 --ATGCCATAGCGTCTTTCAACTATGGTCTTA
15119585 ATCATTTTCC
Statistics
Matches: 99, Mismatches: 17, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
88 5 0.05
89 4 0.04
90 88 0.89
91 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (90 bp):
ATGCCATAGCGTCTTTCAACTATGGTCTTACTCAATAGAATAGTGATGCCATAACGTCTTTCAGT
CATAGTCTTACTCGATAGAATAGTA
Found at i:15120885 original size:12 final size:12
Alignment explanation
Indices: 15120868--15120893 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15120858 GTTCGAGGAG
15120868 AACTCAGTGAAT
1 AACTCAGTGAAT
15120880 AACTCAGTGAAT
1 AACTCAGTGAAT
15120892 AA
1 AA
15120894 TCGGAAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (12 bp):
AACTCAGTGAAT
Found at i:15121079 original size:13 final size:13
Alignment explanation
Indices: 15121061--15121087 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15121051 CTTAGAAATC
15121061 ATTTCTTTTAAAA
1 ATTTCTTTTAAAA
15121074 ATTTCTTTTAAAA
1 ATTTCTTTTAAAA
15121087 A
1 A
15121088 GGACTTGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTCTTTTAAAA
Found at i:15122106 original size:27 final size:27
Alignment explanation
Indices: 15122068--15122131 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 27
15122058 ACCTGGCCAA
*
15122068 CCCAGCTCACCACACAGACTAGTGAAG
1 CCCAGCTCACCAAACAGACTAGTGAAG
*
15122095 CCCAGCTCACCAAACATACTAGTGAAG
1 CCCAGCTCACCAAACAGACTAGTGAAG
15122122 CCCTAGCTCA
1 CCC-AGCTCA
15122132 TCAACACATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 28 0.82
28 6 0.18
ACGTcount: A:0.33, C:0.38, G:0.16, T:0.14
Consensus pattern (27 bp):
CCCAGCTCACCAAACAGACTAGTGAAG
Found at i:15123327 original size:12 final size:12
Alignment explanation
Indices: 15123310--15123356 Score: 94
Period size: 12 Copynumber: 3.9 Consensus size: 12
15123300 TTTCTTAATT
15123310 TCATTTCCATTA
1 TCATTTCCATTA
15123322 TCATTTCCATTA
1 TCATTTCCATTA
15123334 TCATTTCCATTA
1 TCATTTCCATTA
15123346 TCATTTCCATT
1 TCATTTCCATT
15123357 TTTTGAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (12 bp):
TCATTTCCATTA
Found at i:15133500 original size:24 final size:24
Alignment explanation
Indices: 15133468--15133515 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
15133458 CGTATAATTT
*
15133468 AGCAATTGACTGCGAATTAGGCTG
1 AGCAATTGAATGCGAATTAGGCTG
15133492 AGCAATTGAATGCGAATTAGGCTG
1 AGCAATTGAATGCGAATTAGGCTG
15133516 TGTAGTGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (24 bp):
AGCAATTGAATGCGAATTAGGCTG
Found at i:15142270 original size:38 final size:38
Alignment explanation
Indices: 15142228--15142304 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
15142218 TGTGTGTGAG
15142228 AAAGGTTCGTGAGAAGGTTTTCTTCTTTCTTCAGATTA
1 AAAGGTTCGTGAGAAGGTTTTCTTCTTTCTTCAGATTA
15142266 AAAGGTTCGTGAGAAGGTTTTCTTCTTTCTTCAGATTA
1 AAAGGTTCGTGAGAAGGTTTTCTTCTTTCTTCAGATTA
15142304 A
1 A
15142305 TTCTTTAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.42
Consensus pattern (38 bp):
AAAGGTTCGTGAGAAGGTTTTCTTCTTTCTTCAGATTA
Found at i:15143276 original size:41 final size:42
Alignment explanation
Indices: 15143223--15143324 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 42
15143213 CTTTTACATA
* *** *
15143223 GCCTTT-TTGCATTCTGTTAACCTTTGTGGTACTTTGGTATG
1 GCCTTTGTGGCATTCTGTTAACCTCCATGGTACTTTGATATG
* * *
15143264 G-CTTTGTGGCATTCTATTAGCCTCCATGGTATTTTGATATG
1 GCCTTTGTGGCATTCTGTTAACCTCCATGGTACTTTGATATG
15143305 GCCTTTGTGGCATTCTGTTA
1 GCCTTTGTGGCATTCTGTTA
15143325 GCATCTGTGT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
40 4 0.08
41 29 0.58
42 17 0.34
ACGTcount: A:0.14, C:0.18, G:0.23, T:0.46
Consensus pattern (42 bp):
GCCTTTGTGGCATTCTGTTAACCTCCATGGTACTTTGATATG
Found at i:15143344 original size:42 final size:42
Alignment explanation
Indices: 15143260--15143359 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
15143250 GGTACTTTGG
* **
15143260 TATGG-CTTTGTGGCATTCTATTAGCCTCCATGGTATTTTGA
1 TATGGCCTTTGTGGCATTCTATTAGCATCCATGGTATCCTGA
* ** *
15143301 TATGGCCTTTGTGGCATTCTGTTAGCATCTGTGTTATCCTGA
1 TATGGCCTTTGTGGCATTCTATTAGCATCCATGGTATCCTGA
* *
15143343 TATGGCATTTATGGCAT
1 TATGGCCTTTGTGGCAT
15143360 CCTCTATAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 5 0.10
42 44 0.90
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (42 bp):
TATGGCCTTTGTGGCATTCTATTAGCATCCATGGTATCCTGA
Found at i:15145699 original size:22 final size:22
Alignment explanation
Indices: 15145653--15145699 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
15145643 TGAAAAGTAC
* * *
15145653 ATGTGGCATTCTTCCCTGATCT
1 ATGTGGCATGCTTCCCTCATAT
*
15145675 ATGTGGCATGCTTCTCTCATAT
1 ATGTGGCATGCTTCCCTCATAT
15145697 ATG
1 ATG
15145700 CATGAACATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.40
Consensus pattern (22 bp):
ATGTGGCATGCTTCCCTCATAT
Found at i:15152241 original size:20 final size:20
Alignment explanation
Indices: 15152216--15152257 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
15152206 CGAAATAAAA
15152216 TATTTAAAAGTGTGGAAACT
1 TATTTAAAAGTGTGGAAACT
15152236 TATTTAAAAGTGTGGAAACT
1 TATTTAAAAGTGTGGAAACT
15152256 TA
1 TA
15152258 GGTAGCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.36
Consensus pattern (20 bp):
TATTTAAAAGTGTGGAAACT
Found at i:15154639 original size:28 final size:28
Alignment explanation
Indices: 15154608--15154663 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
15154598 TTATTTTGAT
*
15154608 GAAGTGATTAAAAACTAAAATTTAACTA
1 GAAGAGATTAAAAACTAAAATTTAACTA
15154636 GAAGAGATTAAAAACTAAAATTTAACTA
1 GAAGAGATTAAAAACTAAAATTTAACTA
15154664 AGTAAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.55, C:0.07, G:0.11, T:0.27
Consensus pattern (28 bp):
GAAGAGATTAAAAACTAAAATTTAACTA
Found at i:15156158 original size:22 final size:22
Alignment explanation
Indices: 15156133--15156176 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15156123 AAAGTAAATC
* *
15156133 AAAATTTATGAAAATTTAATAT
1 AAAATTAATGAAAATTAAATAT
*
15156155 AAAATTAATTAAAATTAAATAT
1 AAAATTAATGAAAATTAAATAT
15156177 GTACATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATTAATGAAAATTAAATAT
Found at i:15166582 original size:49 final size:49
Alignment explanation
Indices: 15166489--15166584 Score: 115
Period size: 49 Copynumber: 2.0 Consensus size: 49
15166479 TACGGAGGAA
* * ** *
15166489 GTATCTGGCAGTGTATCTGCAATTTCTGTTGGCTTTACCCCAATATTTT
1 GTATCTAGCAGTATATCTGCAATTTCTGTTGGCTCGACCACAATATTTT
15166538 GTATCTAGCAGTATATCTGC-ATTATCTAG-TGGCTCGACCACAATATT
1 GTATCTAGCAGTATATCTGCAATT-TCT-GTTGGCTCGACCACAATATT
15166585 CCGCTTCTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 3 0.08
49 36 0.90
50 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.39
Consensus pattern (49 bp):
GTATCTAGCAGTATATCTGCAATTTCTGTTGGCTCGACCACAATATTTT
Found at i:15175461 original size:18 final size:18
Alignment explanation
Indices: 15175438--15175473 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15175428 AGAGTATGGA
15175438 AGAACCCTAGAAATTGGG
1 AGAACCCTAGAAATTGGG
15175456 AGAACCCTAGAAATTGGG
1 AGAACCCTAGAAATTGGG
15175474 GTAAGATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.28, T:0.17
Consensus pattern (18 bp):
AGAACCCTAGAAATTGGG
Found at i:15196903 original size:36 final size:36
Alignment explanation
Indices: 15196863--15196961 Score: 128
Period size: 36 Copynumber: 2.8 Consensus size: 36
15196853 TTTTTAGTGG
* *
15196863 CATGCTTTACACGCAAATCAGAATATTAGAATATGA
1 CATGCTTTACATGCAAATCAGAATATCAGAATATGA
* * * *
15196899 CATGCTTAACATGTAAATTAGAATATCAGAATATGG
1 CATGCTTTACATGCAAATCAGAATATCAGAATATGA
15196935 CATG-TTTAACATGCAAATCAGAATATC
1 CATGCTTT-ACATGCAAATCAGAATATC
15196962 GATAATCATA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
35 2 0.04
36 51 0.96
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.29
Consensus pattern (36 bp):
CATGCTTTACATGCAAATCAGAATATCAGAATATGA
Found at i:15198016 original size:17 final size:18
Alignment explanation
Indices: 15197996--15198033 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
15197986 CAATATGTGG
15197996 AATTAATGAATACTT-GA
1 AATTAATGAATACTTGGA
15198013 AATTAATGAATACTTGGA
1 AATTAATGAATACTTGGA
15198031 AAT
1 AAT
15198034 GTTATGGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.47, C:0.05, G:0.13, T:0.34
Consensus pattern (18 bp):
AATTAATGAATACTTGGA
Found at i:15198969 original size:43 final size:43
Alignment explanation
Indices: 15198921--15199006 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
15198911 AAGGTAAATC
* * * *
15198921 CAACAACCC-ATGTTTATCTTCTTCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAT-ATTATATTCTCCTCTTTTTAAATTATTTTTT
15198964 CAACAACCCAATATTATATTCTCCTCTTTTTAAATTATTTTTT
1 CAACAACCCAATATTATATTCTCCTCTTTTTAAATTATTTTTT
15199007 TATAGGATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 36 0.95
44 2 0.05
ACGTcount: A:0.26, C:0.22, G:0.01, T:0.51
Consensus pattern (43 bp):
CAACAACCCAATATTATATTCTCCTCTTTTTAAATTATTTTTT
Found at i:15200178 original size:27 final size:27
Alignment explanation
Indices: 15200136--15200291 Score: 143
Period size: 27 Copynumber: 5.8 Consensus size: 27
15200126 ATTCAAAGTG
*
15200136 CGCCACAAAGCCTATTCTTTTAGAATA
1 CGCCACAAAGGCTATTCTTTTAGAATA
* * *
15200163 CGCCACAAAGGTTATTCTTTCATAATA
1 CGCCACAAAGGCTATTCTTTTAGAATA
* ** * *
15200190 CGCCATAAAGTTTATTCTTTTAGACTT
1 CGCCACAAAGGCTATTCTTTTAGAATA
** *
15200217 TACCACAAAGGCTATTATTTT-GTAATA
1 CGCCACAAAGGCTATTCTTTTAG-AATA
* * *
15200244 CACCACAAAGGCTATTCTTTTAGACTT
1 CGCCACAAAGGCTATTCTTTTAGAATA
* *
15200271 CGTCACAAAGGCTATCCTTTT
1 CGCCACAAAGGCTATTCTTTT
15200292 TCGATGTGTT
Statistics
Matches: 102, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 1 0.01
27 100 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (27 bp):
CGCCACAAAGGCTATTCTTTTAGAATA
Found at i:15200291 original size:81 final size:81
Alignment explanation
Indices: 15200138--15200291 Score: 175
Period size: 81 Copynumber: 1.9 Consensus size: 81
15200128 TCAAAGTGCG
* * * * * **
15200138 CCACAAAGCCTATTCTTTTAGAATACGCCACAAAGGTTATTCTTTCATAATACGCCATAAAGTTT
1 CCACAAAGCCTATTATTTTAGAATACACCACAAAGGCTATTCTTTCAGAATACGCCACAAAGGCT
*
15200203 ATTCTTTTAGACTTTA
66 ATCCTTTTAGACTTTA
* * * * *
15200219 CCACAAAGGCTATTATTTT-GTAATACACCACAAAGGCTATTCTTTTAGACTTCGTCACAAAGGC
1 CCACAAAGCCTATTATTTTAG-AATACACCACAAAGGCTATTCTTTCAGAATACGCCACAAAGGC
15200283 TATCCTTTT
65 TATCCTTTT
15200292 TCGATGTGTT
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
80 1 0.02
81 58 0.98
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (81 bp):
CCACAAAGCCTATTATTTTAGAATACACCACAAAGGCTATTCTTTCAGAATACGCCACAAAGGCT
ATCCTTTTAGACTTTA
Found at i:15200620 original size:18 final size:18
Alignment explanation
Indices: 15200599--15200633 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15200589 TACTCACATC
15200599 ACATAACATAC-TATCCAG
1 ACAT-ACATACATATCCAG
15200617 ACATACATACATATCCA
1 ACATACATACATATCCA
15200634 TATTTCATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.46, C:0.29, G:0.03, T:0.23
Consensus pattern (18 bp):
ACATACATACATATCCAG
Found at i:15209455 original size:31 final size:31
Alignment explanation
Indices: 15209420--15209481 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
15209410 ACAGACCAGG
*
15209420 GACTTAAAT-AAAATTTTTTGAATAGTTCAGT
1 GACTTAAATGAAAA-TTTTTGAATAATTCAGT
*
15209451 GACTTAAATGGAAATTTTTGAATAATTCAGT
1 GACTTAAATGAAAATTTTTGAATAATTCAGT
15209482 AACCAAATCG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.40
Consensus pattern (31 bp):
GACTTAAATGAAAATTTTTGAATAATTCAGT
Done.