Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 56 of 210
Found at i:19709961 original size:29 final size:31
Alignment explanation
Indices: 19709914--19709994 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 31
19709904 CATTTTTGGG
*
19709914 CCCCTGAACTTT-TCTAAA-TTACATTTCAA
1 CCCCTAAACTTTCTCTAAATTTACATTTCAA
*
19709943 CCCCTAAACTTTCTC-AAATTTACATTTCTA
1 CCCCTAAACTTTCTCTAAATTTACATTTCAA
19709973 CCCCTAAACTTTC-CT-AATTTAC
1 CCCCTAAACTTTCTCTAAATTTAC
19709995 GTTTTAGCCC
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
29 22 0.47
30 25 0.53
ACGTcount: A:0.30, C:0.31, G:0.01, T:0.38
Consensus pattern (31 bp):
CCCCTAAACTTTCTCTAAATTTACATTTCAA
Found at i:19710005 original size:29 final size:29
Alignment explanation
Indices: 19709913--19710005 Score: 98
Period size: 29 Copynumber: 3.2 Consensus size: 29
19709903 ACATTTTTGG
* * * *
19709913 GCCCCTGAACTTTTCTAAATTACATTTCA
1 GCCCCTAAACTTTCCTAATTTACATTTTA
* *
19709942 ACCCCTAAACTTTCTCAAATTTACATTTCTA
1 GCCCCTAAACTTTC-CTAATTTACATTT-TA
*
19709973 -CCCCTAAACTTTCCTAATTTACGTTTTA
1 GCCCCTAAACTTTCCTAATTTACATTTTA
19710001 GCCCC
1 GCCCC
19710006 CTAATTTTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
28 2 0.04
29 26 0.49
30 24 0.45
31 1 0.02
ACGTcount: A:0.27, C:0.31, G:0.04, T:0.38
Consensus pattern (29 bp):
GCCCCTAAACTTTCCTAATTTACATTTTA
Found at i:19710041 original size:29 final size:31
Alignment explanation
Indices: 19709991--19710052 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 31
19709981 CTTTCCTAAT
* *
19709991 TTACGTTTTAGCCCCCTAATTTTT-CAAAAA
1 TTACATTTTAACCCCCTAATTTTTGCAAAAA
* *
19710021 TTACATTTTAACCCCGT-ATTTTTGCCAAAA
1 TTACATTTTAACCCCCTAATTTTTGCAAAAA
19710051 TT
1 TT
19710053 GTACTTTTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (31 bp):
TTACATTTTAACCCCCTAATTTTTGCAAAAA
Found at i:19710461 original size:19 final size:20
Alignment explanation
Indices: 19710439--19710476 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
19710429 ACAGCAAGCA
19710439 AAAGAA-AAAAAAGAAAAGT
1 AAAGAAGAAAAAAGAAAAGT
*
19710458 AAAGAAGAAAAAGGAAAAG
1 AAAGAAGAAAAAAGAAAAG
19710477 GGAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (20 bp):
AAAGAAGAAAAAAGAAAAGT
Found at i:19710641 original size:20 final size:20
Alignment explanation
Indices: 19710595--19710646 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 20
19710585 AAAAGAAAGT
*
19710595 TAAGAGAAGAAGAAGAGAGAA
1 TAAGA-AAGAAAAAGAGAGAA
19710616 -AA-AAAGAAAAAGAGAGAA
1 TAAGAAAGAAAAAGAGAGAA
19710634 TAAGAAAGAAAAA
1 TAAGAAAGAAAAA
19710647 ATAAAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 14 0.50
19 3 0.11
20 11 0.39
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (20 bp):
TAAGAAAGAAAAAGAGAGAA
Found at i:19710653 original size:28 final size:29
Alignment explanation
Indices: 19710580--19710647 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
19710570 CTGCCGAAGG
*
19710580 AGAAAAAAAGAAAGTTAAGAGAAGAAGAAGAG
1 AGAAAAAAAGAAA---AAGAGAAGAAGAAGAA
*
19710612 AGAAAAAAAGAAAAAGAG-AGAATAAGAA
1 AGAAAAAAAGAAAAAGAGAAGAAGAAGAA
19710640 AGAAAAAA
1 AGAAAAAA
19710648 TAAAAATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 16 0.47
29 5 0.15
32 13 0.38
ACGTcount: A:0.72, C:0.00, G:0.24, T:0.04
Consensus pattern (29 bp):
AGAAAAAAAGAAAAAGAGAAGAAGAAGAA
Found at i:19733324 original size:82 final size:80
Alignment explanation
Indices: 19733214--19733764 Score: 563
Period size: 82 Copynumber: 6.8 Consensus size: 80
19733204 ACTTTTCAAA
* *
19733214 AAAAAAATTTCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTCT
1 AAAAAAA--TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTT-T
19733279 TTTAAATTTCTGTTTTTTC
63 TTTAAATTTCTG-TTTTTC
* * * *
19733298 AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCGGGTCACATGTCGTGGTATTTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA--TTTTT
19733363 TTAAATTTCTGTTTTTC
64 TTAAATTTCTGTTTTTC
*
19733380 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA--TTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTTT
* * * **
19733443 CAATTACTACTTTTAAAAAAA
66 AAATTTCT-GTTTT-----TC
* * *
19733464 AAATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACATGTCGTGGTATTTCT
1 AAA--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTT-T
*
19733529 TTTAAATTTCTGCTTTTC
63 TTTAAATTTCTGTTTTTC
*
19733547 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-CGGGTCACATGCCGAGGTA-TTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTTT
*
19733610 AATTTTCTGTTTTTC
66 AAATTTCTGTTTTTC
* * * *
19733625 --AAAAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCAGGTCAC--GCTGAGGTA---TTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTTT
* *
19733683 CAATTTATG-TTTTC
66 AAATTTCTGTTTTTC
* * * *
19733697 AAAAAAAAAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGAGTCA-A-GCTGAGGTAT
1 ------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTAT
19733760 TTTTT
60 TTTTT
19733765 AATTTTTTTC
Statistics
Matches: 397, Mismatches: 44, Indels: 53
0.80 0.09 0.11
Matches are distributed among these distances:
72 5 0.01
73 9 0.02
75 8 0.02
76 34 0.09
77 7 0.02
78 27 0.07
79 6 0.02
80 66 0.17
81 34 0.09
82 104 0.26
83 19 0.05
84 13 0.03
86 51 0.13
88 4 0.01
89 10 0.03
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (80 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTTT
AAATTTCTGTTTTTC
Found at i:19733507 original size:168 final size:166
Alignment explanation
Indices: 19733301--19733613 Score: 572
Period size: 167 Copynumber: 1.9 Consensus size: 166
19733291 TTTTTTCAAA
*
19733301 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCGGGTCACATGTCGTGGTATTTTTTTTTA
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCGGGTCACATGTCGTGGTA-TTTCTTTTA
*
19733366 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGC
65 AATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-CGGGTCACACGC
19733431 CGAGGTATTTTTCAATTACTACTTTTAAAAAAAAAATC
129 CGAGGTATTTTTCAATTACTACTTTTAAAAAAAAAATC
*
19733469 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACATGTCGTGGTATTTCTTTTAA
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCGGGTCACATGTCGTGGTATTTCTTTTAA
*
19733534 ATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCGGGTCACATGCCG
66 ATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCGGGTCACACGCCG
19733599 AGGTATTTTTCAATT
131 AGGTATTTTTCAATT
19733614 TTCTGTTTTT
Statistics
Matches: 141, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
166 28 0.20
167 59 0.42
168 54 0.38
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (166 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCGGGTCACATGTCGTGGTATTTCTTTTAA
ATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCGGGTCACACGCCG
AGGTATTTTTCAATTACTACTTTTAAAAAAAAAATC
Found at i:19733719 original size:80 final size:76
Alignment explanation
Indices: 19733469--19733769 Score: 290
Period size: 80 Copynumber: 3.8 Consensus size: 76
19733459 AAAAAAAATC
* * *
19733469 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACATG-TCGTGGTATTTCTTTTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC--GCT-GAGGTA--T-TTTTC
*
19733533 AATTTCTGCTTTTCAAA
60 AATTTATGCTTTTCAAA
*
19733550 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-CGGGTCACATGCCGAGGTATTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC--GCTGAGGTATTTTTCAA-T
* *
19733614 TTCTGTTTTTC--A
63 TTATGCTTTTCAAA
* * *
19733626 AAAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCAGGTCACGCTGAGGTA-TTTTCAATTTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTCAATTTA
19733690 TG-TTTTCAAAAAAAAA
66 TGCTTTTC------AAA
* * * * *
19733706 AAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGAGTCAAGCTGAGGTATTTTTTAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTCAATTT
19733770 TTTTCTTTTT
Statistics
Matches: 192, Mismatches: 16, Indels: 24
0.83 0.07 0.10
Matches are distributed among these distances:
72 5 0.03
73 5 0.03
74 7 0.04
75 8 0.04
76 34 0.18
77 13 0.07
78 12 0.06
80 65 0.34
81 43 0.22
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTCAATTTA
TGCTTTTCAAA
Found at i:19734212 original size:30 final size:29
Alignment explanation
Indices: 19734175--19734281 Score: 124
Period size: 30 Copynumber: 3.6 Consensus size: 29
19734165 NNNNNNNNNN
19734175 AAATTACATTTCAACCCCTAAACTTTCTCA
1 AAATTACATTTCAACCCCTAAACTTT-TCA
* * * *
19734205 AATTTACATATCTACCCCTAAACTTTTCT
1 AAATTACATTTCAACCCCTAAACTTTTCA
* * *
19734234 AAATTACATTTTAGCCCCTAAATTTTTCAA
1 AAATTACATTTCAACCCCTAAACTTTTC-A
*
19734264 AAATTACATTTTAACCCC
1 AAATTACATTTCAACCCC
19734282 ATATTTTTGC
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 24 0.38
30 40 0.62
ACGTcount: A:0.36, C:0.26, G:0.01, T:0.37
Consensus pattern (29 bp):
AAATTACATTTCAACCCCTAAACTTTTCA
Found at i:19734297 original size:30 final size:29
Alignment explanation
Indices: 19734175--19734312 Score: 95
Period size: 30 Copynumber: 4.7 Consensus size: 29
19734165 NNNNNNNNNN
* *
19734175 AAATTACATTTCAACCCCTAAACTTTCTC-A
1 AAATTACATTTTAACCCC-AAA-TTTTTCAA
* * * *
19734205 AATTTACATATCT-ACCCCTAAACTTTTC-T
1 AAATTACAT-TTTAACCCC-AAATTTTTCAA
*
19734234 AAATTACATTTTAGCCCCTAAATTTTTCAA
1 AAATTACATTTTAACCCC-AAATTTTTCAA
* *
19734264 AAATTACATTTTAACCCCATATTTTTGCTA
1 AAATTACATTTTAACCCCAAATTTTT-CAA
*
19734294 AAATTCCACTTTT-ACCCCA
1 AAATTACA-TTTTAACCCCA
19734313 GAAACTTTAC
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
28 2 0.02
29 32 0.36
30 49 0.56
31 5 0.06
ACGTcount: A:0.34, C:0.26, G:0.01, T:0.38
Consensus pattern (29 bp):
AAATTACATTTTAACCCCAAATTTTTCAA
Found at i:19734707 original size:20 final size:21
Alignment explanation
Indices: 19734679--19734722 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
19734669 AGAAAACAGC
19734679 AAGCAAAAGAAAAAAAAAGAA
1 AAGCAAAAGAAAAAAAAAGAA
* *
19734700 AAGC-AAAGAAGAAAAAGGAA
1 AAGCAAAAGAAAAAAAAAGAA
19734720 AAG
1 AAG
19734723 GGAAAAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.75, C:0.05, G:0.20, T:0.00
Consensus pattern (21 bp):
AAGCAAAAGAAAAAAAAAGAA
Found at i:19734867 original size:28 final size:28
Alignment explanation
Indices: 19734826--19734893 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 28
19734816 CTGCCGAAGG
*
19734826 AGAAAAAAAGAAAGTTAAGAGAAGAAGAAGAG
1 AGAAAAAAAGAAA---AAGAG-AGAAGAAGAA
*
19734858 AGAAAAAAAGAAAAAGAGAGAATAAGAA
1 AGAAAAAAAGAAAAAGAGAGAAGAAGAA
19734886 AGAAAAAA
1 AGAAAAAA
19734894 TAAAAGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 16 0.47
29 5 0.15
32 13 0.38
ACGTcount: A:0.72, C:0.00, G:0.24, T:0.04
Consensus pattern (28 bp):
AGAAAAAAAGAAAAAGAGAGAAGAAGAA
Found at i:19734887 original size:20 final size:20
Alignment explanation
Indices: 19734841--19734892 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 20
19734831 AAAAGAAAGT
*
19734841 TAAGAGAAGAAGAAGAGAGAA
1 TAAGA-AAGAAAAAGAGAGAA
19734862 -AA-AAAGAAAAAGAGAGAA
1 TAAGAAAGAAAAAGAGAGAA
19734880 TAAGAAAGAAAAA
1 TAAGAAAGAAAAA
19734893 ATAAAAGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 14 0.50
19 3 0.11
20 11 0.39
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (20 bp):
TAAGAAAGAAAAAGAGAGAA
Found at i:19734998 original size:24 final size:24
Alignment explanation
Indices: 19734970--19735024 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
19734960 CAGCCCATGC
19734970 GCAGCAGAACAAC-CCAACAGCCAG
1 GCAGCAG-ACAACTCCAACAGCCAG
* * *
19734994 GCAGCAGGCCACTCCAGCAGCCAG
1 GCAGCAGACAACTCCAACAGCCAG
19735018 GCAGCAG
1 GCAGCAG
19735025 GCCAGGCCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 3 0.11
24 24 0.89
ACGTcount: A:0.33, C:0.38, G:0.27, T:0.02
Consensus pattern (24 bp):
GCAGCAGACAACTCCAACAGCCAG
Found at i:19735028 original size:12 final size:12
Alignment explanation
Indices: 19734989--19735031 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
19734979 CAACCCAACA
19734989 GCCAGGCAGCAG
1 GCCAGGCAGCAG
**
19735001 GCCACTCCAGCA-
1 GCCA-GGCAGCAG
19735013 GCCAGGCAGCAG
1 GCCAGGCAGCAG
19735025 GCCAGGC
1 GCCAGGC
19735032 CCAGCGCAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 5 0.20
12 15 0.60
13 5 0.20
ACGTcount: A:0.23, C:0.40, G:0.35, T:0.02
Consensus pattern (12 bp):
GCCAGGCAGCAG
Found at i:19735102 original size:14 final size:14
Alignment explanation
Indices: 19735080--19735116 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
19735070 GTGCAGTAGT
*
19735080 CCAGCAGCTGCAGC
1 CCAGCAGCTCCAGC
*
19735094 CCAGTAGCTCCAGC
1 CCAGCAGCTCCAGC
19735108 CCAGCAGCT
1 CCAGCAGCT
19735117 TCGGCCTAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.22, C:0.43, G:0.24, T:0.11
Consensus pattern (14 bp):
CCAGCAGCTCCAGC
Found at i:19735718 original size:17 final size:17
Alignment explanation
Indices: 19735698--19735885 Score: 82
Period size: 18 Copynumber: 10.6 Consensus size: 17
19735688 AAAAAATTCA
19735698 TGTTTTCAAAATTTCCG
1 TGTTTTCAAAATTTCCG
19735715 TGTTTTCAAAAAATCTT-CG
1 TGTTTTC--AAAAT-TTCCG
*
19735734 TG-TTTCAAAAATTCTCG
1 TGTTTTCAAAATTTC-CG
** ** *
19735751 TGAATAAAAAATTTTCCT
1 TGTTTTCAAAA-TTTCCG
* *
19735769 TCTTTTCAAAA-GTCTCG
1 TGTTTTCAAAATTTC-CG
* * *
19735786 T-ATTTCAAAAATTTTCT
1 TGTTTTC-AAAATTTCCG
* *
19735803 TGTTTACAACAAAATTCCG
1 TGTTTTC-A-AAATTTCCG
19735822 TG-TTTCATAAATTTCCG
1 TGTTTTCA-AAATTTCCG
*
19735839 TGTTTTCAAAAATATCC-
1 TGTTTTC-AAAATTTCCG
*
19735856 TGTCTTTCAAAAATTTTCG
1 TGT-TTTC-AAAATTTCCG
19735875 TGTTTTCAAAA
1 TGTTTTCAAAA
19735886 AAATTGACCG
Statistics
Matches: 127, Mismatches: 28, Indels: 32
0.68 0.15 0.17
Matches are distributed among these distances:
15 2 0.02
16 10 0.08
17 37 0.29
18 52 0.41
19 24 0.19
20 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.43
Consensus pattern (17 bp):
TGTTTTCAAAATTTCCG
Found at i:19735726 original size:18 final size:18
Alignment explanation
Indices: 19735698--19735923 Score: 132
Period size: 17 Copynumber: 12.7 Consensus size: 18
19735688 AAAAAATTCA
19735698 TGTTTTC-AAAATTTCCG
1 TGTTTTCAAAAATTTCCG
19735715 TGTTTTCAAAAAATCTT-CG
1 TGTTTTC-AAAAAT-TTCCG
19735734 TG-TTTCAAAAA-TTCTCG
1 TGTTTTCAAAAATTTC-CG
** * *
19735751 TG-AATAAAAAATTTTCCT
1 TGTTTTCAAAAA-TTTCCG
* * *
19735769 TCTTTTCAAAAGTCT-CG
1 TGTTTTCAAAAATTTCCG
* * *
19735786 T-ATTTCAAAAATTTTCT
1 TGTTTTCAAAAATTTCCG
* *
19735803 TGTTTACAACAAAATTCCG
1 TGTTTTCAA-AAATTTCCG
*
19735822 TG-TTTCATAAATTTCCG
1 TGTTTTCAAAAATTTCCG
*
19735839 TGTTTTCAAAAATATCC-
1 TGTTTTCAAAAATTTCCG
*
19735856 TGTCTTTCAAAAATTTTCG
1 TGT-TTTCAAAAATTTCCG
*
19735875 TGTTTTCAAAAAAATTGACCG
1 TGTTTTC--AAAAATT-TCCG
* *
19735896 TG-TTTCATAAATTTTCG
1 TGTTTTCAAAAATTTCCG
19735913 TG-TTTCAAAAA
1 TGTTTTCAAAAA
19735924 AAAATCCTCG
Statistics
Matches: 159, Mismatches: 33, Indels: 34
0.70 0.15 0.15
Matches are distributed among these distances:
15 2 0.01
16 10 0.06
17 51 0.32
18 51 0.32
19 28 0.18
20 13 0.08
21 4 0.03
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (18 bp):
TGTTTTCAAAAATTTCCG
Found at i:19735738 original size:36 final size:34
Alignment explanation
Indices: 19735698--19735923 Score: 179
Period size: 36 Copynumber: 6.4 Consensus size: 34
19735688 AAAAAATTCA
* *
19735698 TGTTTTCAAAATTTCCGTGTTTTCAAAAAATCTTCG
1 TGTTTTCAAAAATTCCGTG-TTTC-AAAAATTTTCG
** * *
19735734 TG-TTTCAAAAATTCTCGTGAATAAAAAATTTTCCT
1 TGTTTTCAAAAATTC-CGTGTTTCAAAAATTTT-CG
* * * *
19735769 TCTTTTC-AAAAGTCTCGTATTTCAAAAATTTTCT
1 TGTTTTCAAAAATTC-CGTGTTTCAAAAATTTTCG
* * *
19735803 TGTTTACAACAAAATTCCGTGTTTCATAAATTTCCG
1 TGTTTTC-A-AAAATTCCGTGTTTCAAAAATTTTCG
*
19735839 TGTTTTCAAAAATATCCTGTCTTTCAAAAATTTTCG
1 TGTTTTCAAAAAT-TCC-GTGTTTCAAAAATTTTCG
*
19735875 TGTTTTCAAAAAAATTGACCGTGTTTCATAAATTTTCG
1 TGTTTTC--AAAAATT--CCGTGTTTCAAAAATTTTCG
19735913 TG-TTTCAAAAA
1 TGTTTTCAAAAA
19735924 AAAATCCTCG
Statistics
Matches: 153, Mismatches: 25, Indels: 25
0.75 0.12 0.12
Matches are distributed among these distances:
34 20 0.13
35 43 0.28
36 53 0.35
37 11 0.07
38 24 0.16
39 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (34 bp):
TGTTTTCAAAAATTCCGTGTTTCAAAAATTTTCG
Found at i:19735936 original size:38 final size:38
Alignment explanation
Indices: 19735782--19735939 Score: 148
Period size: 36 Copynumber: 4.3 Consensus size: 38
19735772 TTTCAAAAGT
* * * * *
19735782 CTCGTATTTCAAAAATTTTCTTGTTTAC-AACAAAATT
1 CTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAAAAATC
* * *
19735819 C-CGTGTTTCATAAATTTCCGTGTTTTC-AAAAATATC
1 CTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAAAAATC
* * *
19735855 CT-GTCTTTCAAAAATTTTCGTGTTTTCAAAAAAATTGA
1 CTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAAAAAT-C
*
19735893 C-CGTGTTTCATAAATTTTCGTG-TTTCAAAAAAAAATC
1 CTCGTGTTTCAAAAATTTTCGTGTTTTC-AAAAAAAATC
19735930 CTCGTGTTTC
1 CTCGTGTTTC
19735940 GTTTTTTATA
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
36 50 0.52
37 12 0.12
38 35 0.36
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (38 bp):
CTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAAAAATC
Found at i:19735968 original size:85 final size:85
Alignment explanation
Indices: 19735864--19736022 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 85
19735854 CCTGTCTTTC
*
19735864 AAAAATTTTCGTGTTTTC-AAAA-AAATTGACCGTGTTTC-ATAAATTTTCGTGTTTCAAAAA-A
1 AAAAATTTTCATGTTTTCAAAAACAAATT--CCGTGTTTCAAT-AATTTTCGTGTTTCAAAAAGA
19735925 AAATCCTCGTGTTTCGTTTTTTATA
63 AAAT--TCGTGTTTCGTTTTTTATA
** *
19735950 AAAAATTTT-ATGTTTTCAAAAACAAATTTTGTGTTTTAATAATTTTCGTGTTTCAAAAAGAAAA
1 AAAAATTTTCATGTTTTCAAAAACAAATTCCGTGTTTCAATAATTTTCGTGTTTCAAAAAGAAAA
19736014 TTCGTGTTT
66 TTCGTGTTT
19736023 TCAAAAAAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
84 8 0.12
85 32 0.49
86 20 0.31
87 5 0.08
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.44
Consensus pattern (85 bp):
AAAAATTTTCATGTTTTCAAAAACAAATTCCGTGTTTCAATAATTTTCGTGTTTCAAAAAGAAAA
TTCGTGTTTCGTTTTTTATA
Found at i:19736004 original size:37 final size:38
Alignment explanation
Indices: 19735963--19736046 Score: 98
Period size: 37 Copynumber: 2.2 Consensus size: 38
19735953 AATTTTATGT
* * * * *
19735963 TTTCAAAAACAAATTTTGTGTTTT-AATAATTTTCGTG
1 TTTCAAAAACAAAATTCGTGTTTTAAAAAAATCTCGTG
*
19736000 TTTCAAAAAGAAAATTCGTGTTTTCAAAAAAATCTCGTG
1 TTTCAAAAACAAAATTCGTGTTTT-AAAAAAATCTCGTG
19736039 TTTCAAAA
1 TTTCAAAA
19736047 TTTTCGTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 21 0.54
39 18 0.46
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (38 bp):
TTTCAAAAACAAAATTCGTGTTTTAAAAAAATCTCGTG
Found at i:19736019 original size:20 final size:19
Alignment explanation
Indices: 19735994--19736046 Score: 65
Period size: 18 Copynumber: 2.7 Consensus size: 19
19735984 TTTAATAATT
19735994 TTCGTGTTTCAAAAAGAAAA
1 TTCGTGTTTCAAAAA-AAAA
19736014 TTCGTGTTTTC--AAAAAAA
1 TTCGTG-TTTCAAAAAAAAA
19736032 TCTCGTGTTTCAAAA
1 T-TCGTGTTTCAAAA
19736047 TTTTCGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
18 9 0.31
19 8 0.28
20 8 0.28
21 4 0.14
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (19 bp):
TTCGTGTTTCAAAAAAAAA
Found at i:19743766 original size:19 final size:19
Alignment explanation
Indices: 19743742--19743779 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19743732 CTACTACCAC
19743742 CCACCGTAATAAAATTTGT
1 CCACCGTAATAAAATTTGT
*
19743761 CCACCGTAATTAAATTTGT
1 CCACCGTAATAAAATTTGT
19743780 TATTAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (19 bp):
CCACCGTAATAAAATTTGT
Found at i:19744072 original size:17 final size:17
Alignment explanation
Indices: 19744052--19744110 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
19744042 CTAGCATGAT
19744052 TAAATAATTCAATAATA
1 TAAATAATTCAATAATA
* *
19744069 TAAATAATACAA-AATG
1 TAAATAATTCAATAATA
19744085 TGAAATTTAATTCAATAATA
1 T-AAA--TAATTCAATAATA
19744105 TAAATA
1 TAAATA
19744111 GTAGACATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 4 0.12
17 16 0.47
19 10 0.29
20 4 0.12
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (17 bp):
TAAATAATTCAATAATA
Found at i:19744540 original size:34 final size:35
Alignment explanation
Indices: 19744485--19744551 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
19744475 CAAACACCAG
*
19744485 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
19744520 AAAACATTTTCCTG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
19744552 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:19746435 original size:19 final size:21
Alignment explanation
Indices: 19746402--19746449 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
19746392 TATATATATT
*
19746402 TTTATAACAATATTGAT-A-AA
1 TTTAAAAC-ATATTGATAATAA
19746422 TTTAAAACATATTGATAATAA
1 TTTAAAACATATTGATAATAA
19746443 TTTAAAA
1 TTTAAAA
19746450 AAATGTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 8 0.32
20 8 0.32
21 9 0.36
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (21 bp):
TTTAAAACATATTGATAATAA
Found at i:19750521 original size:26 final size:26
Alignment explanation
Indices: 19750492--19750572 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
19750482 AACACACCAA
* *
19750492 TATCGCAGCAAAGCTGCCAATAATAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* *
19750518 TATCGCAGCAAAGTTGCCAGCAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
*
19750544 TATCGCAGCAACGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
19750570 TAT
1 TAT
19750573 ACTTCCTCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:19750554 original size:14 final size:14
Alignment explanation
Indices: 19750516--19750555 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
19750506 TGCCAATAAT
19750516 AGTATCGCAGCAA-
1 AGTATCGCAGCAAC
19750529 AGT-T-GCCAGCAAC
1 AGTATCG-CAGCAAC
19750542 AGTATCGCAGCAAC
1 AGTATCGCAGCAAC
19750556 GCTGCCAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
11 1 0.04
12 7 0.30
13 6 0.26
14 8 0.35
15 1 0.04
ACGTcount: A:0.35, C:0.28, G:0.23, T:0.15
Consensus pattern (14 bp):
AGTATCGCAGCAAC
Found at i:19756089 original size:15 final size:15
Alignment explanation
Indices: 19756050--19756114 Score: 51
Period size: 16 Copynumber: 4.1 Consensus size: 15
19756040 AAAATTTTTG
* *
19756050 ATATATTATTATTTA
1 ATATATTTTTATATA
19756065 ATTGATATTTTTATATCA
1 A-T-ATATTTTTATAT-A
*
19756083 A-ATATTTATATGATA
1 ATATATTTTTAT-ATA
19756098 ATATATTTTATATATA
1 ATATATTTT-TATATA
19756114 A
1 A
19756115 GGCTATTATT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.30
16 13 0.32
17 13 0.32
18 2 0.05
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.54
Consensus pattern (15 bp):
ATATATTTTTATATA
Found at i:19756105 original size:16 final size:16
Alignment explanation
Indices: 19756069--19756114 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
19756059 TATTTAATTG
19756069 ATATTTT-TATATCAA-
1 ATATTTTATATAT-AAT
19756084 ATA-TTTATATGATAAT
1 ATATTTTATAT-ATAAT
19756100 ATATTTTATATATAA
1 ATATTTTATATATAA
19756115 GGCTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 3 0.11
15 8 0.30
16 9 0.33
17 7 0.26
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATTTTATATATAAT
Found at i:19763633 original size:27 final size:27
Alignment explanation
Indices: 19763603--19763654 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
19763593 TTTATCGAGG
* *
19763603 TTATTAGTTTATCGATAAATTAATATT
1 TTATTAATTTATCGATAAATGAATATT
19763630 TTATTAATTTATCGATAAATGAATA
1 TTATTAATTTATCGATAAATGAATA
19763655 AATACTCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (27 bp):
TTATTAATTTATCGATAAATGAATATT
Found at i:19767825 original size:87 final size:88
Alignment explanation
Indices: 19767659--19767828 Score: 231
Period size: 87 Copynumber: 1.9 Consensus size: 88
19767649 AAGAGAAGAG
*
19767659 AAAGAAAGTTTTGCTTTCTTTACAATTTGGTCCTTCCACCAAAAATTTACCATTTCCACCTAGAA
1 AAAGAAAGTTTTGCTTTCTTTACAATTTGGTCCTTCCACCAAAAATTCACCATTTCCACCTAGAA
*
19767724 ATCAAAAGATTTTCCATAGCGGA
66 ATCAAAAGAATTTCCATAGCGGA
* * * *
19767747 AAAGAAAG-TTT-CATTTCTTTACAATTTGGTCC-TCTCACTAAAAATTCATCATTTTCACTTAG
1 AAAGAAAGTTTTGC-TTTCTTTACAATTTGGTCCTTC-CACCAAAAATTCACCATTTCCACCTAG
19767809 AAATC-AAAGAAATTTCCATA
64 AAATCAAAAG-AATTTCCATA
19767829 TCCACCAAGA
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
86 7 0.10
87 58 0.79
88 8 0.11
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (88 bp):
AAAGAAAGTTTTGCTTTCTTTACAATTTGGTCCTTCCACCAAAAATTCACCATTTCCACCTAGAA
ATCAAAAGAATTTCCATAGCGGA
Found at i:19769968 original size:97 final size:98
Alignment explanation
Indices: 19769851--19770046 Score: 376
Period size: 97 Copynumber: 2.0 Consensus size: 98
19769841 GATGAAATTG
19769851 TACTTTCCCCTTAAAACTGATAAAAATTTGATTTAATCTTTTAAAAATTATAAAAATATATGCTA
1 TACTTTCCCC-TAAAACTGATAAAAATTTGATTTAATCTTTTAAAAATTATAAAAATATATGCTA
19769916 TTCAAGTGGTAAAATTGTACTTTTACTATCGTAA
65 TTCAAGTGGTAAAATTGTACTTTTACTATCGTAA
19769950 TACTTTCCCC-AAAACTGATAAAAATTTGATTTAATCTTTTAAAAATTATAAAAATATATGCTAT
1 TACTTTCCCCTAAAACTGATAAAAATTTGATTTAATCTTTTAAAAATTATAAAAATATATGCTAT
19770014 TCAAGTGGTAAAATTGTACTTTTACTATCGTAA
66 TCAAGTGGTAAAATTGTACTTTTACTATCGTAA
19770047 AAATTACAAT
Statistics
Matches: 97, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
97 87 0.90
99 10 0.10
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (98 bp):
TACTTTCCCCTAAAACTGATAAAAATTTGATTTAATCTTTTAAAAATTATAAAAATATATGCTAT
TCAAGTGGTAAAATTGTACTTTTACTATCGTAA
Found at i:19771393 original size:106 final size:106
Alignment explanation
Indices: 19771256--19771468 Score: 363
Period size: 106 Copynumber: 2.0 Consensus size: 106
19771246 AAATAGCACT
*
19771256 AATTAAATCAAATTTTATGAAAAATGCCTTCGTATTTTGAGTTAATCGGGAAGAAAATCATATCT
1 AATTAAATCAAATTTTATGAAAAATGCCTTCGTATTTCGAGTTAATCGGGAAGAAAATCATATCT
19771321 CGTAAGTTAGGACACGATGTCTCGAATTCCCAAAAATAAGA
66 CGTAAGTTAGGACACGATGTCTCGAATTCCCAAAAATAAGA
* * *
19771362 AATTAAATCAAATTTTATGAAGAATGTCTTCGTATTTCGAGTTAATCGGGAAGAAAATCATGTCT
1 AATTAAATCAAATTTTATGAAAAATGCCTTCGTATTTCGAGTTAATCGGGAAGAAAATCATATCT
* * *
19771427 CGTAAGTTAGGGCACGATGTCTCGAATTCTCGAAAATAAGA
66 CGTAAGTTAGGACACGATGTCTCGAATTCCCAAAAATAAGA
19771468 A
1 A
19771469 TGCTTATTTT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 100 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (106 bp):
AATTAAATCAAATTTTATGAAAAATGCCTTCGTATTTCGAGTTAATCGGGAAGAAAATCATATCT
CGTAAGTTAGGACACGATGTCTCGAATTCCCAAAAATAAGA
Found at i:19774139 original size:42 final size:43
Alignment explanation
Indices: 19774069--19774204 Score: 156
Period size: 42 Copynumber: 3.3 Consensus size: 43
19774059 TCTCCTGAGC
* *
19774069 TTCAG-TTAACTCATATGAG-TTCCAGTTTAACCCTTT-TGGGT
1 TTCAGTTTAGCTCTTATGAGCTT-CAGTTTAACCCTTTATGGGT
*
19774110 TTCAGTTTAGCTCTTTTGAGCTTCAGTTTAA-CCTTTATGGGT
1 TTCAGTTTAGCTCTTATGAGCTTCAGTTTAACCCTTTATGGGT
* * * *
19774152 TTCCGTTTAGCTCTTATGAGCTTCCGTTTAACCC-TTACGAGT
1 TTCAGTTTAGCTCTTATGAGCTTCAGTTTAACCCTTTATGGGT
*
19774194 TTCTGTTTAGC
1 TTCAGTTTAGC
19774205 ACTAATGTGA
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.12
42 68 0.83
43 4 0.05
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (43 bp):
TTCAGTTTAGCTCTTATGAGCTTCAGTTTAACCCTTTATGGGT
Found at i:19774188 original size:21 final size:21
Alignment explanation
Indices: 19774064--19774202 Score: 93
Period size: 21 Copynumber: 6.7 Consensus size: 21
19774054 TTAGCTCTCC
* *
19774064 TGAGCTTCAG-TTAACTCATA
1 TGAGCTTCAGTTTAACCCTTA
*
19774084 TGAG-TTCCAGTTTAACCCTTT
1 TGAGCTT-CAGTTTAACCCTTA
* * * * *
19774105 TGGGTTTCAGTTTAGCTCTTT
1 TGAGCTTCAGTTTAACCCTTA
*
19774126 TGAGCTTCAGTTTAACCTTTA
1 TGAGCTTCAGTTTAACCCTTA
* * * * *
19774147 TGGGTTTCCGTTTAGCTCTTA
1 TGAGCTTCAGTTTAACCCTTA
*
19774168 TGAGCTTCCGTTTAACCCTTA
1 TGAGCTTCAGTTTAACCCTTA
* * *
19774189 CGAGTTTCTGTTTA
1 TGAGCTTCAGTTTA
19774203 GCACTAATGT
Statistics
Matches: 91, Mismatches: 25, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
19 2 0.02
20 7 0.08
21 80 0.88
22 2 0.02
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.44
Consensus pattern (21 bp):
TGAGCTTCAGTTTAACCCTTA
Found at i:19782287 original size:6 final size:5
Alignment explanation
Indices: 19782238--19782317 Score: 97
Period size: 6 Copynumber: 14.6 Consensus size: 5
19782228 CGAAAAGAGA
19782238 AAAAT CAAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AATAAT AATAAT
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AA-AAT
19782291 AATAAT AATAAT AATAAT AATAAT AAA
1 AA-AAT AA-AAT AA-AAT AA-AAT AAA
19782318 CAATAAAATG
Statistics
Matches: 73, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
5 33 0.45
6 40 0.55
ACGTcount: A:0.74, C:0.01, G:0.00, T:0.25
Consensus pattern (5 bp):
AAAAT
Found at i:19782290 original size:9 final size:9
Alignment explanation
Indices: 19782246--19782316 Score: 100
Period size: 9 Copynumber: 8.6 Consensus size: 9
19782236 GAAAAATCAA
19782246 AATAA-AAT
1 AATAATAAT
19782254 AA-AATAA-
1 AATAATAAT
19782261 AATAA-AAT
1 AATAATAAT
19782269 AA-AATAA-
1 AATAATAAT
19782276 AATAATAAT
1 AATAATAAT
19782285 AATAATAAT
1 AATAATAAT
19782294 AATAATAAT
1 AATAATAAT
19782303 AATAATAAT
1 AATAATAAT
19782312 AATAA
1 AATAA
19782317 ACAATAAAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 11
0.84 0.00 0.16
Matches are distributed among these distances:
7 10 0.18
8 15 0.26
9 32 0.56
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (9 bp):
AATAATAAT
Found at i:19785261 original size:19 final size:19
Alignment explanation
Indices: 19785205--19785262 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 19
19785195 CAAAAAAAAA
*
19785205 TTATACTTTTTTAAATTAAT
1 TTATA-TTTTTTAAATTATT
*
19785225 TTATA-TTTTTAAAATATT
1 TTATATTTTTTAAATTATT
* *
19785243 TTTTATTTTTTAATTTATT
1 TTATATTTTTTAAATTATT
19785262 T
1 T
19785263 CTACAATGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 15 0.47
19 12 0.38
20 5 0.16
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATATTTTTTAAATTATT
Found at i:19787376 original size:7 final size:7
Alignment explanation
Indices: 19787364--19787395 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
19787354 TTGATTCTTA
19787364 AAAATTC
1 AAAATTC
19787371 AAAATTC
1 AAAATTC
19787378 AAAATTC
1 AAAATTC
19787385 AAAATTC
1 AAAATTC
19787392 AAAA
1 AAAA
19787396 AAATAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAATTC
Found at i:19807396 original size:26 final size:25
Alignment explanation
Indices: 19807361--19807420 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
19807351 TACACCACAA
*
19807361 CTCTTATGAGCATCCC-ATTATATGG
1 CTCTTATGAGCATCCCGATTA-AAGG
*
19807386 CTCTTCATGAGCTTCCCGATTAAAGG
1 CTCTT-ATGAGCATCCCGATTAAAGG
19807412 CTCTT-TGAG
1 CTCTTATGAG
19807421 AGCTTCCCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 4 0.13
25 5 0.16
26 18 0.58
27 4 0.13
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (25 bp):
CTCTTATGAGCATCCCGATTAAAGG
Found at i:19807478 original size:23 final size:23
Alignment explanation
Indices: 19807423--19807478 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
19807413 TCTTTGAGAG
* *
19807423 CTTCCCTTTAGTGCTCGCTTGAA
1 CTTCCCGTTAGTGCTCGCATGAA
** * *
19807446 CTTCTTGTTAGTGTTTGCATGAA
1 CTTCCCGTTAGTGCTCGCATGAA
19807469 CTTCCCGTTA
1 CTTCCCGTTA
19807479 TATGGCTATC
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (23 bp):
CTTCCCGTTAGTGCTCGCATGAA
Found at i:19807523 original size:24 final size:24
Alignment explanation
Indices: 19807493--19807551 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
19807483 GCTATCTGGT
*
19807493 GCTACCCGTTAATTGCTCTTCGGA
1 GCTACCCGTTAATTGCTCTTCAGA
19807517 GCTACCCGTTAATTGCTCTTCAGA
1 GCTACCCGTTAATTGCTCTTCAGA
*
19807541 GTTACCCGTTA
1 GCTACCCGTTA
19807552 TAGGCTCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.34
Consensus pattern (24 bp):
GCTACCCGTTAATTGCTCTTCAGA
Found at i:19807558 original size:24 final size:24
Alignment explanation
Indices: 19807493--19807560 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
19807483 GCTATCTGGT
* *
19807493 GCTACCCGTTAATTGCTCTTCGGA
1 GCTACCCGTTAATGGCTCTTCAGA
*
19807517 GCTACCCGTTAATTGCTCTTCAGA
1 GCTACCCGTTAATGGCTCTTCAGA
*
19807541 GTTACCCGTT-ATAGGCTCTT
1 GCTACCCGTTAAT-GGCTCTT
19807561 TGTGAACTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 2 0.05
24 38 0.95
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.35
Consensus pattern (24 bp):
GCTACCCGTTAATGGCTCTTCAGA
Found at i:19809740 original size:117 final size:117
Alignment explanation
Indices: 19809517--19809761 Score: 368
Period size: 115 Copynumber: 2.1 Consensus size: 117
19809507 CACGGCCAGC
* *
19809517 CACAAGCCCGTGTGCTAGGCTGTGTAAACAATTAAATTTTCAAAAAATTAGGTGCAGGGGGACAC
1 CACACGCCCGTGTGCTAGGCCGTGTAAACAATTAAATTTTCAAAAAATTAGGTGCAGGGGGACAC
* *
19809582 ACGGCCAAACCACACGCTCGTGCGCATGGCTATGTGTCACACACGACTGAGA
66 ACAGCCAAACCACACGCTCGTACGCATGGCTATGTGTCACACACGACTGAGA
* * *
19809634 CACACGCCCGTGTGCTAGGCCGTGTGAACAATTAAATTTTTAAAAAATTAGGTGCA-GGGTACAC
1 CACACGCCCGTGTGCTAGGCCGTGTAAACAATTAAATTTTCAAAAAATTAGGTGCAGGGGGACAC
* * * * *
19809698 ACATCC-AACCACATGTTCGTACGCATGGCTGTGTGTCACACACGGCTGAGA
66 ACAGCCAAACCACACGCTCGTACGCATGGCTATGTGTCACACACGACTGAGA
19809749 CACACGCCCGTGT
1 CACACGCCCGTGT
19809762 CTCTGCCCGT
Statistics
Matches: 116, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
115 53 0.46
116 11 0.09
117 52 0.45
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (117 bp):
CACACGCCCGTGTGCTAGGCCGTGTAAACAATTAAATTTTCAAAAAATTAGGTGCAGGGGGACAC
ACAGCCAAACCACACGCTCGTACGCATGGCTATGTGTCACACACGACTGAGA
Found at i:19810843 original size:26 final size:26
Alignment explanation
Indices: 19810814--19810874 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
19810804 AGCTATATTA
*
19810814 GGAAGCTCACAAAGAGCCATTTAACG
1 GGAAGCTCACAAAGAGCCATATAACG
** *
19810840 GGAAGCTCATGAAGAGCCATATATCG
1 GGAAGCTCACAAAGAGCCATATAACG
*
19810866 GGATGCTCA
1 GGAAGCTCA
19810875 TAAGAACTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.18
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCATATAACG
Found at i:19810875 original size:26 final size:25
Alignment explanation
Indices: 19810693--19810879 Score: 84
Period size: 24 Copynumber: 7.6 Consensus size: 25
19810683 GGCCAAAATA
* *
19810693 GGAAGCTCATAAGAGCCATAT-TCA
1 GGAAGCTCATAAGAGCCATATAACG
* **
19810717 GGAAGCTCGTGCGAGCC-TATAACG
1 GGAAGCTCATAAGAGCCATATAACG
* **
19810741 GGTAGCTCCGAAGAGCCAT-TAACCGG
1 GGAAGCTCATAAGAGCCATATAA-C-G
** * *
19810767 GGAA-CTTC-GGATAGCCATATATCG
1 GGAAGC-TCATAAGAGCCATATAACG
* * * *
19810791 GGAAGTTCA-AGCGAGCTATATTA--
1 GGAAGCTCATA-AGAGCCATATAACG
* *
19810814 GGAAGCTCACAAAGAGCCATTTAACG
1 GGAAGCTCA-TAAGAGCCATATAACG
*
19810840 GGAAGCTCATGAAGAGCCATATATCG
1 GGAAGCTCAT-AAGAGCCATATAACG
*
19810866 GGATGCTCATAAGA
1 GGAAGCTCATAAGA
19810880 ACTAAGGTGT
Statistics
Matches: 119, Mismatches: 30, Indels: 27
0.68 0.17 0.15
Matches are distributed among these distances:
23 11 0.09
24 45 0.38
25 24 0.20
26 39 0.33
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.20
Consensus pattern (25 bp):
GGAAGCTCATAAGAGCCATATAACG
Found at i:19811047 original size:129 final size:131
Alignment explanation
Indices: 19810803--19811048 Score: 275
Period size: 129 Copynumber: 1.9 Consensus size: 131
19810793 AAGTTCAAGC
* * * * *
19810803 GAGCTATATTAGGAAGCTCACAAAGAGCCATTTAACGGGAAGCTCATGAAGAGCCATATATCGGG
1 GAGCTATAATAGGAAGCTCACAAAGAACCATATAACGGGAAGCTCATGAAGAGCCATATAACAGG
* * * *
19810868 ATGCTCATAAGAACTAAGGTGTGTCCACAACACATGTATGATCAGCACCAATCGAGATGCTCCGA
66 ACGCTCATAAGAACTAAGGTGTGTCCACAACACATGCAAGACCAGCACCAATCGAGATGCTCCGA
19810933 A
131 A
* * *
19810934 GAGCTATTAATAGGAAGCTCGC-AAGAACCATATAACGGGATGCTCAT-AAGAGCTA-ATAACAG
1 GAGCTA-TAATAGGAAGCTCACAAAGAACCATATAACGGGAAGCTCATGAAGAGCCATATAACAG
* ** * * * *
19810996 GACGCTCTTTCGAGCTATGGTGTGTCCGCAACATATGCAAGACCA-CAACCAAT
65 GACGCTCATAAGAACTAAGGTGTGTCCACAACACATGCAAGACCAGC-ACCAAT
19811049 ACGGGATCCC
Statistics
Matches: 94, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
128 1 0.01
129 45 0.48
130 7 0.07
131 28 0.30
132 13 0.14
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (131 bp):
GAGCTATAATAGGAAGCTCACAAAGAACCATATAACGGGAAGCTCATGAAGAGCCATATAACAGG
ACGCTCATAAGAACTAAGGTGTGTCCACAACACATGCAAGACCAGCACCAATCGAGATGCTCCGA
A
Found at i:19823113 original size:43 final size:43
Alignment explanation
Indices: 19823066--19823151 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
19823056 GTCTTACATG
**
19823066 GAAATCTCGTATCAATGCCAATAGCCCAGCTATGGTCCTACAC
1 GAAATCTCAAATCAATGCCAATAGCCCAGCTATGGTCCTACAC
* *
19823109 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACAC
1 GAAATCTCAAATCAATGCCAATAGCCCAGCTATGGTCCTACAC
19823152 ATAAACACTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
GAAATCTCAAATCAATGCCAATAGCCCAGCTATGGTCCTACAC
Found at i:19834057 original size:23 final size:24
Alignment explanation
Indices: 19834031--19834085 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 24
19834021 AAGATTAACT
19834031 ATTTACAAAATCAAATC-TCTAAG
1 ATTTACAAAATCAAATCTTCTAAG
* *
19834054 ATTTACAGAATCATATCTTCTAAG
1 ATTTACAAAATCAAATCTTCTAAG
19834078 A-TTACAAA
1 ATTTACAAA
19834086 TCATCCCAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 21 0.75
24 7 0.25
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.33
Consensus pattern (24 bp):
ATTTACAAAATCAAATCTTCTAAG
Found at i:19837349 original size:107 final size:108
Alignment explanation
Indices: 19837149--19837414 Score: 399
Period size: 107 Copynumber: 2.5 Consensus size: 108
19837139 TAAATAACCA
* * * * *
19837149 AAATACCCCCATAGGGTAAAATGTCTGATATACCCCTATAGGGTTAAATAATCGAAATACCCCTA
1 AAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGATCAAAATACCCCTA
* *
19837214 TAGGGTAAAATAACTGAAATACCCCTATAGGTTAAAATGACTG
66 TAGGGTAAAATAACCGAAATACCCCTATAGGGTAAAATGACTG
* * *
19837257 AAATACCCTCATAGGGTAAAATAACTGAAATACCCCCATAGGGTAAAATGATCAAAATA-CCCTA
1 AAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGATCAAAATACCCCTA
* *
19837321 TAGGGTAAAATAACCGAAATACCTCTATAGGGTAGAATGACTG
66 TAGGGTAAAATAACCGAAATACCCCTATAGGGTAAAATGACTG
* *
19837364 AAATACCCCCATAGGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGA
1 AAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGA
19837415 CTGTTCTACC
Statistics
Matches: 141, Mismatches: 17, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
107 90 0.64
108 51 0.36
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (108 bp):
AAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGATCAAAATACCCCTA
TAGGGTAAAATAACCGAAATACCCCTATAGGGTAAAATGACTG
Found at i:19837428 original size:27 final size:27
Alignment explanation
Indices: 19837149--19837417 Score: 330
Period size: 27 Copynumber: 10.0 Consensus size: 27
19837139 TAAATAACCA
* *
19837149 AAATACCCCCATAGGGTAAAATGTCTG
1 AAATACCCCTATAGGGTAAAATGACTG
* * *
19837176 ATATACCCCTATAGGGTTAAAT-AATCG
1 AAATACCCCTATAGGGTAAAATGACT-G
*
19837203 AAATACCCCTATAGGGTAAAATAACTG
1 AAATACCCCTATAGGGTAAAATGACTG
*
19837230 AAATACCCCTATAGGTTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
*
19837257 AAATA-CCCTCATAGGGTAAAATAACTG
1 AAATACCCCT-ATAGGGTAAAATGACTG
* *
19837284 AAATACCCCCATAGGGTAAAATGA-TCA
1 AAATACCCCTATAGGGTAAAATGACT-G
* *
19837311 AAATA-CCCTATAGGGTAAAATAACCG
1 AAATACCCCTATAGGGTAAAATGACTG
* *
19837337 AAATACCTCTATAGGGTAGAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
* *
19837364 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGACTG
*
19837391 AAATACCCCTAAAGGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
19837418 TTCTACCCCT
Statistics
Matches: 205, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
26 27 0.13
27 173 0.84
28 5 0.02
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAAAATGACTG
Found at i:19839861 original size:23 final size:23
Alignment explanation
Indices: 19839828--19839879 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
19839818 NNNNNNNNNN
*
19839828 CACTGATATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
19839851 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
19839874 CACTGA
1 CACTGA
19839880 TCAATAACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:19839980 original size:8 final size:8
Alignment explanation
Indices: 19839967--19839995 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
19839957 ACCCGGGACT
19839967 CACTGTAA
1 CACTGTAA
19839975 CACTGTAA
1 CACTGTAA
19839983 CACTGTAA
1 CACTGTAA
19839991 CACTG
1 CACTG
19839996 ATCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:19847014 original size:20 final size:20
Alignment explanation
Indices: 19846986--19847023 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
19846976 GTATAAAATG
*
19846986 TTTAAAAAATGGTATTAAAA
1 TTTAAAAAATGATATTAAAA
*
19847006 TTTAGAAAATGATATTAA
1 TTTAAAAAATGATATTAA
19847024 TAAATATGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.37
Consensus pattern (20 bp):
TTTAAAAAATGATATTAAAA
Found at i:19848666 original size:18 final size:17
Alignment explanation
Indices: 19848642--19848699 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 17
19848632 TTATAAAACA
19848642 AAAAAATTTAAAATATT
1 AAAAAATTTAAAATATT
19848659 ATAAAAATTTTAAAATA-T
1 A-AAAAA-TTTAAAATATT
19848677 AAAAATATATTAAAATTATT
1 AAAAA-AT-TTAAAA-TATT
19848697 AAA
1 AAA
19848700 TTTAAACATT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
17 6 0.17
18 14 0.40
19 11 0.31
20 4 0.11
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAAAATTTAAAATATT
Found at i:19848670 original size:19 final size:18
Alignment explanation
Indices: 19848641--19848699 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
19848631 TTTATAAAAC
*
19848641 AAAAAAATTTAAAATATT
1 AAAAAATTTTAAAATATT
19848659 ATAAAAATTTTAAAATA-T
1 A-AAAAATTTTAAAATATT
*
19848677 AAAAATATATTAAAATTATT
1 AAAAA-ATTTTAAAA-TATT
19848697 AAA
1 AAA
19848700 TTTAAACATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 4 0.11
18 11 0.31
19 16 0.46
20 4 0.11
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAAATTTTAAAATATT
Found at i:19848673 original size:26 final size:27
Alignment explanation
Indices: 19848644--19848705 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
19848634 ATAAAACAAA
19848644 AAAATTT-AAAATATTATAAAAATT-TT
1 AAAATTTAAAAATA-TATAAAAATTATT
* *
19848670 AAAATATAAAAATATATTAAAATTATT
1 AAAATTTAAAAATATATAAAAATTATT
19848697 -AAATTTAAA
1 AAAATTTAAA
19848706 CATTCAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 23 0.74
27 8 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (27 bp):
AAAATTTAAAAATATATAAAAATTATT
Found at i:19854896 original size:51 final size:51
Alignment explanation
Indices: 19854820--19855113 Score: 473
Period size: 51 Copynumber: 5.8 Consensus size: 51
19854810 AGATATATTT
*
19854820 TGGTAGCTTTAACTGCACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
1 TGGTAGCTTTAACTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
*
19854871 TGGTAGCTTTAACTGCACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
1 TGGTAGCTTTAACTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
*
19854922 TGGTAGCTTTAGCTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
1 TGGTAGCTTTAACTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
*
19854973 TGGTAGCTTTAACTGCACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
1 TGGTAGCTTTAACTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
* * * * *
19855024 TGGTAGC-TTAGCAACACTTATCTAATCGGTGACAAGTGACAAGTGATAAG
1 TGGTAGCTTTAACTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
* * *
19855074 TGGTAGTTTTAGCTACACTTATCTGATCAGTGACAAGTGA
1 TGGTAGCTTTAACTACACTTATCTGATCAGTGATAAGTGA
19855114 TAAATGTGAT
Statistics
Matches: 228, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
50 43 0.19
51 185 0.81
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (51 bp):
TGGTAGCTTTAACTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAG
Found at i:19857348 original size:25 final size:25
Alignment explanation
Indices: 19857283--19857350 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
19857273 CCATTATTTG
*
19857283 GGAA-GCTCATGAGAGC-CATATAAC
1 GGAATGCTCATGAGAGCTAAT-TAAC
19857307 GGAATGCTCATGAGAGCTAATTAAC
1 GGAATGCTCATGAGAGCTAATTAAC
* * *
19857332 GGGATGCTCTTGCGAGCTA
1 GGAATGCTCATGAGAGCTA
19857351 TGGTGTGTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 4 0.11
25 32 0.84
26 2 0.05
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (25 bp):
GGAATGCTCATGAGAGCTAATTAAC
Found at i:19859313 original size:55 final size:55
Alignment explanation
Indices: 19859229--19859396 Score: 318
Period size: 55 Copynumber: 3.1 Consensus size: 55
19859219 TAGATAAATA
* *
19859229 AGACCGAGATGAGAGTTTCATGGGTAAGAATTTGGTATGATTGTGCCAAGTAGTG
1 AGACCGAGAAGAGAGTATCATGGGTAAGAATTTGGTATGATTGTGCCAAGTAGTG
19859284 AGACCGAGAAGAGAGTATCATGGGTAAGAATTTGGTATGATTGTGCCAAGTAGTG
1 AGACCGAGAAGAGAGTATCATGGGTAAGAATTTGGTATGATTGTGCCAAGTAGTG
19859339 AGACCGAGAAGAGAGTATCATGGGTAAGAATTTGGTATGATTGTGCCAAGTAGTG
1 AGACCGAGAAGAGAGTATCATGGGTAAGAATTTGGTATGATTGTGCCAAGTAGTG
19859394 AGA
1 AGA
19859397 TTGAGAGGAG
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 111 1.00
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.26
Consensus pattern (55 bp):
AGACCGAGAAGAGAGTATCATGGGTAAGAATTTGGTATGATTGTGCCAAGTAGTG
Found at i:19861704 original size:21 final size:22
Alignment explanation
Indices: 19861680--19861720 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
19861670 TTTCACCTAA
19861680 TATTTAC-TTAATTT-TTTTATT
1 TATTTACATT-ATTTGTTTTATT
19861701 TATTTACATTATTTGTTTTA
1 TATTTACATTATTTGTTTTA
19861721 AACTACCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.68
Consensus pattern (22 bp):
TATTTACATTATTTGTTTTATT
Found at i:19863897 original size:12 final size:12
Alignment explanation
Indices: 19863859--19863900 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
19863849 ATTGGTCATA
19863859 GAGAGATTTGAG
1 GAGAGATTTGAG
* *
19863871 GAGGGATATT-TG
1 GAGAGAT-TTGAG
19863883 GAGAGATTTGAG
1 GAGAGATTTGAG
19863895 GAGAGA
1 GAGAGA
19863901 ATATTGGGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 20 0.83
13 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.43, T:0.24
Consensus pattern (12 bp):
GAGAGATTTGAG
Found at i:19863907 original size:24 final size:24
Alignment explanation
Indices: 19863859--19863905 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
19863849 ATTGGTCATA
*
19863859 GAGAGATTTGAGGAGGGATATTTG
1 GAGAGATTTGAGGAGGAATATTTG
19863883 GAGAGATTTGAGGAGAGAATATT
1 GAGAGATTTGAGGAG-GAATATT
19863906 GGGATTTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.34, C:0.00, G:0.38, T:0.28
Consensus pattern (24 bp):
GAGAGATTTGAGGAGGAATATTTG
Found at i:19864625 original size:27 final size:28
Alignment explanation
Indices: 19864580--19864640 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
19864570 CCAAAAATAG
* * * *
19864580 GTAAAATGATCGAATTACCCTCA-AAGA
1 GTAAAATGACCAAAATACCCCCATAAGA
19864607 GTAAAATGACCAAAATACCCCCATAAGA
1 GTAAAATGACCAAAATACCCCCATAAGA
19864635 -TAAAAT
1 GTAAAAT
19864641 AATTGTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 25 0.86
28 4 0.14
ACGTcount: A:0.49, C:0.20, G:0.11, T:0.20
Consensus pattern (28 bp):
GTAAAATGACCAAAATACCCCCATAAGA
Found at i:19864848 original size:26 final size:26
Alignment explanation
Indices: 19864819--19864888 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
19864809 TTGCCACATA
*
19864819 TACTGTTACTGGCAGCTTGGCTGCAT
1 TACTGTTACTGGTAGCTTGGCTGCAT
* *
19864845 TACTGTTACTGGTAGTTTTGCTGCAT
1 TACTGTTACTGGTAGCTTGGCTGCAT
* *
19864871 CACTATTACTGGTAGCTT
1 TACTGTTACTGGTAGCTT
19864889 TACTGCGACA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (26 bp):
TACTGTTACTGGTAGCTTGGCTGCAT
Found at i:19865046 original size:28 final size:28
Alignment explanation
Indices: 19865005--19865060 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
19864995 CATTGTATTG
*
19865005 ATTACTGTATTGGGTTAAGGACCACACT
1 ATTACTGTAATGGGTTAAGGACCACACT
*
19865033 ATTACTGTAATGGGTTAAGGCCCACACT
1 ATTACTGTAATGGGTTAAGGACCACACT
19865061 GTAGTGATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (28 bp):
ATTACTGTAATGGGTTAAGGACCACACT
Found at i:19866345 original size:25 final size:26
Alignment explanation
Indices: 19866307--19866388 Score: 93
Period size: 25 Copynumber: 3.3 Consensus size: 26
19866297 AATACTCATA
19866307 CGAGCACATA-AACGAGAAGCTCT-T-T
1 CGAGC-CATATAACGAGAAGCT-TATAT
19866332 CGAGCCATATAACGAGAAGCTTATAT
1 CGAGCCATATAACGAGAAGCTTATAT
* *
19866358 -GAGCCATGTAACGGGAAGCTTATAT
1 CGAGCCATATAACGAGAAGCTTATAT
19866383 -GAGCCA
1 CGAGCCA
19866389 ATATTGGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.10
25 46 0.88
26 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
CGAGCCATATAACGAGAAGCTTATAT
Found at i:19866470 original size:27 final size:25
Alignment explanation
Indices: 19866438--19866488 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 25
19866428 GGAGAGCCAA
19866438 TTAATCGAGAAGCTCATGAAAGAGCCT
1 TTAATCGAGAAGCTC-TG-AAGAGCCT
*
19866465 TTAATCGGGAAGCTCTGAAGAGCC
1 TTAATCGAGAAGCTCTGAAGAGCC
19866489 ATATATCAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.30
26 2 0.09
27 14 0.61
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (25 bp):
TTAATCGAGAAGCTCTGAAGAGCCT
Found at i:19868121 original size:42 final size:42
Alignment explanation
Indices: 19868014--19868148 Score: 128
Period size: 42 Copynumber: 3.1 Consensus size: 42
19868004 ATGTGACTTT
* * * *
19868014 GTGTAAGACCACGACTGGGACGTTGGCATCG-ATTTGAGATTTAC
1 GTGTAAGACTATGCCTGGGACATTGGCATCGTATTT--GA-TTAC
* * * *
19868058 GCGTAAGACTATGTCTAGGACATTGGCATCGTATATGATTAC
1 GTGTAAGACTATGCCTGGGACATTGGCATCGTATTTGATTAC
* *
19868100 GTGTAAGACTCTGCCTGGGACAGTGGCATCGTTATTTGATTAC
1 GTGTAAGACTATGCCTGGGACATTGGCATCG-TATTTGATTAC
*
19868143 ATGTAA
1 GTGTAA
19868149 TACCACGTCT
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 30 0.40
43 17 0.23
44 25 0.33
45 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (42 bp):
GTGTAAGACTATGCCTGGGACATTGGCATCGTATTTGATTAC
Found at i:19868161 original size:43 final size:42
Alignment explanation
Indices: 19868060--19868162 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 42
19868050 AGATTTACGC
** * * *
19868060 GTAAGACTATGTCTAGGACATTGGCATCGTATATGATTACGT
1 GTAAGACTCCGTCTGGGACAGTGGCATCGTATATGATTACAT
* * *
19868102 GTAAGACTCTGCCTGGGACAGTGGCATCGTTATTTGATTACAT
1 GTAAGACTCCGTCTGGGACAGTGGCATCG-TATATGATTACAT
*
19868145 GTAATAC-CACGTCTGGGA
1 GTAAGACTC-CGTCTGGGA
19868163 TGTTGGCATT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
42 26 0.52
43 24 0.48
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
GTAAGACTCCGTCTGGGACAGTGGCATCGTATATGATTACAT
Found at i:19873697 original size:20 final size:21
Alignment explanation
Indices: 19873672--19873710 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
19873662 TTATTTTATT
*
19873672 TTTTAAA-TATTTTTTATAAA
1 TTTTAAATTACTTTTTATAAA
19873692 TTTTAAATTACTTTTTATA
1 TTTTAAATTACTTTTTATA
19873711 TGGCATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTAAATTACTTTTTATAAA
Found at i:19873787 original size:102 final size:103
Alignment explanation
Indices: 19873661--19873865 Score: 403
Period size: 102 Copynumber: 2.0 Consensus size: 103
19873651 TAATAATTTT
19873661 GTTATTTTATTTTTTAAATATTTTTTATAAATTTTAAATTACTTTTTATATGGCATATAAGATAT
1 GTTATTTTATTTTTTAAATATTTTTTATAAATTTTAAATTACTTTTTATATGGCATATAAGATAT
19873726 ACAGTGTCAAGTCTAAAATATATGAATTGCTTCACGAA
66 ACAGTGTCAAGTCTAAAATATATGAATTGCTTCACGAA
19873764 GTTATTTTA-TTTTTAAATATTTTTTATAAATTTTAAATTACTTTTTATATGGCATATAAGATAT
1 GTTATTTTATTTTTTAAATATTTTTTATAAATTTTAAATTACTTTTTATATGGCATATAAGATAT
19873828 ACAGTGTCAAGTCTAAAATATATGAATTGCTTCACGAA
66 ACAGTGTCAAGTCTAAAATATATGAATTGCTTCACGAA
19873866 TTGTCACACG
Statistics
Matches: 102, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
102 93 0.91
103 9 0.09
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (103 bp):
GTTATTTTATTTTTTAAATATTTTTTATAAATTTTAAATTACTTTTTATATGGCATATAAGATAT
ACAGTGTCAAGTCTAAAATATATGAATTGCTTCACGAA
Found at i:19873799 original size:20 final size:21
Alignment explanation
Indices: 19873774--19873812 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
19873764 GTTATTTTAT
*
19873774 TTTTAAA-TATTTTTTATAAA
1 TTTTAAATTACTTTTTATAAA
19873794 TTTTAAATTACTTTTTATA
1 TTTTAAATTACTTTTTATA
19873813 TGGCATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTAAATTACTTTTTATAAA
Found at i:19886484 original size:16 final size:17
Alignment explanation
Indices: 19886463--19886494 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
19886453 TTCATTGGTT
19886463 TATGATATG-AATATTA
1 TATGATATGAAATATTA
19886479 TATGATATGAAATATT
1 TATGATATGAAATATT
19886495 TGAAATTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (17 bp):
TATGATATGAAATATTA
Found at i:19887713 original size:51 final size:50
Alignment explanation
Indices: 19887633--19887806 Score: 208
Period size: 51 Copynumber: 3.4 Consensus size: 50
19887623 GGATTATATG
* **
19887633 GGCTACTATGAGTATAAGATAGTTATGGTCACATGTGTAGTACTAAGTGCA
1 GGCTACTATGTGTACCAGATAGTT-TGGTCACATGTGTAGTACTAAGTGCA
* *
19887684 GGCTACTATGTGTACCAGATAGCTTTGGTCACGTGTGTAGTACTATGTGCA
1 GGCTACTATGTGTACCAGATAG-TTTGGTCACATGTGTAGTACTAAGTGCA
* * *
19887735 GGCTACTACGTGTACC-GA-ATGATATTGATCACATGTGTAGTACTAAGTGTA
1 GGCTACTATGTGTACCAGATA-G-T-TTGGTCACATGTGTAGTACTAAGTGCA
*
19887786 GGCTACTATGTGTACCGGATA
1 GGCTACTATGTGTACCAGATA
19887807 ACATTGATCA
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.01
50 4 0.04
51 96 0.91
52 4 0.04
53 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
GGCTACTATGTGTACCAGATAGTTTGGTCACATGTGTAGTACTAAGTGCA
Found at i:19887813 original size:51 final size:51
Alignment explanation
Indices: 19887661--19887816 Score: 213
Period size: 51 Copynumber: 3.1 Consensus size: 51
19887651 ATAGTTATGG
* * * *
19887661 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTTGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAACATTGA
* * * * * *
19887712 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATATTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAACATTGA
*
19887763 TCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAACATTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAACATTGA
19887814 TCA
1 TCA
19887817 TAAGGCTGGT
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 88 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (51 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAACATTGA
Found at i:19890801 original size:25 final size:25
Alignment explanation
Indices: 19890755--19890803 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
19890745 ACGAGCTTTT
* * *
19890755 CGATATTTGGCCCTCTTGAGCTTCC
1 CGATATTTGGCCCGCATAAGCTTCC
*
19890780 CGATATTTGGCTCGCATAAGCTTC
1 CGATATTTGGCCCGCATAAGCTTC
19890804 TCGTTATTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.16, C:0.29, G:0.20, T:0.35
Consensus pattern (25 bp):
CGATATTTGGCCCGCATAAGCTTCC
Found at i:19890811 original size:25 final size:25
Alignment explanation
Indices: 19890773--19890829 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 25
19890763 GGCCCTCTTG
* ** *
19890773 AGCTTCCCGATATTTGGCTCGCATA
1 AGCTTCTCGATATTCAGCTCACATA
* *
19890798 AGCTTCTCGTTATTCAGCTCACATG
1 AGCTTCTCGATATTCAGCTCACATA
19890823 AGCTTCT
1 AGCTTCT
19890830 TATTAATCAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (25 bp):
AGCTTCTCGATATTCAGCTCACATA
Found at i:19892729 original size:50 final size:51
Alignment explanation
Indices: 19892651--19892746 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 51
19892641 AATTCATATT
* * *
19892651 CAGGAATGCTCATGTGAGTATATAAACGGGTAGCTCTTTCGAGCCATATAA
1 CAGGAATGCTCATGTGAGCATATAAACGGGAAGCTCTTACGAGCCATATAA
*
19892702 CAGGAA-GCTCATGTGAGCCATGT-AACGGGAAGCTCTTACGAGCCA
1 CAGGAATGCTCATGTGAG-CATATAAACGGGAAGCTCTTACGAGCCA
19892747 AATATCGGGA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
50 31 0.77
51 9 0.22
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (51 bp):
CAGGAATGCTCATGTGAGCATATAAACGGGAAGCTCTTACGAGCCATATAA
Found at i:19892755 original size:25 final size:25
Alignment explanation
Indices: 19892670--19892916 Score: 112
Period size: 25 Copynumber: 10.0 Consensus size: 25
19892660 TCATGTGAGT
* * *
19892670 ATATAAACGGGTAGCTCTTTCGAGCC
1 ATAT-AACGGGAAGCTCATACGAGCC
* **
19892696 ATATAACAGGAAGCTCATGTGAGCC
1 ATATAACGGGAAGCTCATACGAGCC
* *
19892721 ATGTAACGGGAAGCTCTTACGAGCC
1 ATATAACGGGAAGCTCATACGAGCC
* * * *
19892746 AAATATCGGGAAGTTCATACGAGTC
1 ATATAACGGGAAGCTCATACGAGCC
* * *
19892771 GTA-AACGAGAAGCTCA-AGAGAGCC
1 ATATAACGGGAAGCTCATA-CGAGCC
* * * *
19892795 AAAT-TCGGGAAGCTCATGCAAGCC
1 ATATAACGGGAAGCTCATACGAGCC
* * **
19892819 A-ATATCAGGAAGCTCCGGA-GAGCC
1 ATATAACGGGAAGCT-CATACGAGCC
* * * **
19892843 AAATAACGGGATGCTCATAAGAGTT
1 ATATAACGGGAAGCTCATACGAGCC
*
19892868 AAATAACGGGAAGCTCATGA-GAGCC
1 ATATAACGGGAAGCTCAT-ACGAGCC
* * *
19892893 -TATTATCGGGACGCTCATAAGAGC
1 ATA-TAACGGGAAGCTCATACGAGC
19892917 TGTGGTGTGT
Statistics
Matches: 163, Mismatches: 48, Indels: 21
0.70 0.21 0.09
Matches are distributed among these distances:
23 3 0.02
24 48 0.29
25 107 0.66
26 5 0.03
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (25 bp):
ATATAACGGGAAGCTCATACGAGCC
Found at i:19893844 original size:82 final size:82
Alignment explanation
Indices: 19893641--19893864 Score: 349
Period size: 82 Copynumber: 2.7 Consensus size: 82
19893631 AGGCTAAGCG
* *
19893641 CCTAGTAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAACCTAGCAGGCTATGTGCCAGTGAT
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAACCTAGCAGGCTATGTGCCGGTGAT
*
19893706 TTGAATCGGGTTATAAA
66 TTGAATCAGGTTATAAA
*
19893723 CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAACCTAGCAGGCTACGTGCCGGTGAT
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAACCTAGCAGGCTATGTGCCGGTGAT
19893788 TTGAATCAGGTTATAAA
66 TTGAATCAGGTTATAAA
* ** * ** *
19893805 CCTAGCAGGCTACGTGCCGGTGATCTGAATCAAGCTATAAGTCTAGCAGTCTATGTGCCG
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAACCTAGCAGGCTATGTGCCG
19893865 TTGAATCTGT
Statistics
Matches: 130, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 130 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (82 bp):
CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAACCTAGCAGGCTATGTGCCGGTGAT
TTGAATCAGGTTATAAA
Found at i:19893863 original size:123 final size:123
Alignment explanation
Indices: 19893641--19893864 Score: 340
Period size: 123 Copynumber: 1.8 Consensus size: 123
19893631 AGGCTAAGCG
* * *
19893641 CCTAGTAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAACCTAGCAGGCTATGTGCCAGTGAT
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATCAGGTTATAAACCTAGCAGGCTACGTGCCAGTGAT
* ** *
19893706 TTGAATCGGGTTATAAACCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
66 CTGAATCAAGCTATAAACCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
*
19893764 CCTAGCAGGCTACGTGCCGGTGATTTGAATCAGGTTATAAACCTAGCAGGCTACGTGCCGGTGAT
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATCAGGTTATAAACCTAGCAGGCTACGTGCCAGTGAT
** * *
19893829 CTGAATCAAGCTATAAGTCTAGCAGTCTATGTGCCG
66 CTGAATCAAGCTATAAACCTAGCAGGCTACGTGCCG
19893865 TTGAATCTGT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
123 89 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (123 bp):
CCTAGCAGGCTACGTGCCGGTGATTTGAATCAGGTTATAAACCTAGCAGGCTACGTGCCAGTGAT
CTGAATCAAGCTATAAACCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
Found at i:19893864 original size:41 final size:41
Alignment explanation
Indices: 19893641--19893835 Score: 345
Period size: 41 Copynumber: 4.8 Consensus size: 41
19893631 AGGCTAAGCG
*
19893641 CCTAGTAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
* *
19893682 CCTAGCAGGCTATGTGCCAGTGATTTGAATCGGGTTATAAA
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
19893723 CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
*
19893764 CCTAGCAGGCTACGTGCCGGTGATTTGAATCAGGTTATAAA
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
*
19893805 CCTAGCAGGCTACGTGCCGGTGATCTGAATC
1 CCTAGCAGGCTACGTGCCGGTGATTTGAATC
19893836 AAGCTATAAG
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 147 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (41 bp):
CCTAGCAGGCTACGTGCCGGTGATTTGAATCGGGTTATAAA
Found at i:19915654 original size:17 final size:16
Alignment explanation
Indices: 19915628--19915665 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
19915618 GACCTATTTT
*
19915628 TGTCCACACGGGCGTG
1 TGTCCACACGGCCGTG
19915644 TGTCACACACGGCCGTG
1 TGTC-CACACGGCCGTG
19915661 TGTCC
1 TGTCC
19915666 CCTGTATCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.13, C:0.34, G:0.32, T:0.21
Consensus pattern (16 bp):
TGTCCACACGGCCGTG
Found at i:19920182 original size:20 final size:20
Alignment explanation
Indices: 19920159--19920201 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
19920149 ACAAAAAAAT
19920159 AAAAAAATCA-AAAAATTCC
1 AAAAAAATCATAAAAATTCC
* *
19920178 AAAAAAGTTATAAAAATTCC
1 AAAAAAATCATAAAAATTCC
19920198 AAAA
1 AAAA
19920202 TTTCATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.67, C:0.12, G:0.02, T:0.19
Consensus pattern (20 bp):
AAAAAAATCATAAAAATTCC
Found at i:19921729 original size:7 final size:7
Alignment explanation
Indices: 19921717--19921748 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
19921707 AATTTTAATA
19921717 ATTATTT
1 ATTATTT
19921724 ATTATTT
1 ATTATTT
19921731 ATTATTT
1 ATTATTT
19921738 ATTATTT
1 ATTATTT
19921745 ATTA
1 ATTA
19921749 AAAATTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
ATTATTT
Found at i:19921805 original size:15 final size:14
Alignment explanation
Indices: 19921778--19921807 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
19921768 TAGAATTTTT
19921778 TAATATTTATATTA
1 TAATATTTATATTA
19921792 TAATATTATATATTA
1 TAATATT-TATATTA
19921807 T
1 T
19921808 TATAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TAATATTTATATTA
Found at i:19927981 original size:16 final size:18
Alignment explanation
Indices: 19927960--19927992 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
19927950 AAAACGTTAA
19927960 TTGAATA-TAAA-ATATT
1 TTGAATACTAAATATATT
19927976 TTGAATACTAAATATAT
1 TTGAATACTAAATATAT
19927993 GAATTAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (18 bp):
TTGAATACTAAATATATT
Found at i:19934982 original size:24 final size:24
Alignment explanation
Indices: 19934935--19934985 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
19934925 CATATCAAAA
*
19934935 CAAGACAACATCGAAATGCCTAAT
1 CAAGACAACATCGAAATGCATAAT
* **
19934959 CAAGACTACATCGAAATTTATAAT
1 CAAGACAACATCGAAATGCATAAT
19934983 CAA
1 CAA
19934986 AGCAGAGAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.22, G:0.10, T:0.22
Consensus pattern (24 bp):
CAAGACAACATCGAAATGCATAAT
Found at i:19942477 original size:16 final size:17
Alignment explanation
Indices: 19942431--19942480 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 17
19942421 TTTAATTTTA
19942431 ATAAAATTACT-AAAATT
1 ATAAAATTA-TGAAAATT
19942448 ATAAAATGTTATGAAAATT
1 ATAAAA--TTATGAAAATT
19942467 -TAAAATTATGAAAA
1 ATAAAATTATGAAAA
19942481 ATTCAAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 9 0.30
17 6 0.20
18 6 0.20
19 9 0.30
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (17 bp):
ATAAAATTATGAAAATT
Found at i:19942488 original size:16 final size:16
Alignment explanation
Indices: 19942456--19942489 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
19942446 TTATAAAATG
*
19942456 TTATGAAAATTTAAAA
1 TTATGAAAAATTAAAA
*
19942472 TTATGAAAAATTCAAA
1 TTATGAAAAATTAAAA
19942488 TT
1 TT
19942490 TAATTGATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (16 bp):
TTATGAAAAATTAAAA
Found at i:19942791 original size:11 final size:10
Alignment explanation
Indices: 19942702--19942798 Score: 55
Period size: 10 Copynumber: 10.0 Consensus size: 10
19942692 TAAATAAAAT
19942702 AATTTTTA-A
1 AATTTTTATA
*
19942711 TATTTTTATA
1 AATTTTTATA
19942721 AATTTTTAATA
1 AATTTTT-ATA
*
19942732 AA-TTTGATA
1 AATTTTTATA
*
19942741 AA-TTCT-TA
1 AATTTTTATA
* *
19942749 CATATTTA-A
1 AATTTTTATA
19942758 AA-TTTTATA
1 AATTTTTATA
*
19942767 AATTTTTGGT-
1 AATTTTT-ATA
19942777 AATTTTTAATA
1 AATTTTT-ATA
19942788 AATTTTATATA
1 AATTTT-TATA
19942799 CCTTTTTAAA
Statistics
Matches: 66, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
8 7 0.11
9 21 0.32
10 22 0.33
11 15 0.23
12 1 0.02
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (10 bp):
AATTTTTATA
Found at i:19944779 original size:27 final size:25
Alignment explanation
Indices: 19944721--19944776 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
19944711 ATAAGTATTA
*
19944721 TTATTATAATACTTTCATGTTTACT
1 TTATTATAATACTTCCATGTTTACT
*
19944746 TTATTATATATACATTCCATTTTTA-T
1 TTATTATA-ATAC-TTCCATGTTTACT
19944772 TTATT
1 TTATT
19944777 TATTTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 8 0.30
26 10 0.37
27 9 0.33
ACGTcount: A:0.29, C:0.11, G:0.02, T:0.59
Consensus pattern (25 bp):
TTATTATAATACTTCCATGTTTACT
Found at i:19948476 original size:124 final size:123
Alignment explanation
Indices: 19948264--19948517 Score: 386
Period size: 124 Copynumber: 2.1 Consensus size: 123
19948254 AAATAGTGGG
* * * * * *
19948264 AAATCGCTTATACCAGGATGCTATTTGAGAAGAAATTGTGAAATTGTGGCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATGAGAAGAAATTGTAAAATCGCGCCCTCGTGGACGCGATT
*
19948329 TCGCTACAGTGGTCATGTAAG-AAATAATTTTTTTTGACGTTTTCTGAGCAAATAGTATA
66 TCGCTACAGTGGTCATGTAAGAAAATAA-TTTTTTTGACG-TTTCTAAGCAAATAGTATA
19948388 AAATCGCTGATACCAGGATGCTATATGAGAAGAAATTGTAAAATCGCGCCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATGAGAAGAAATTGTAAAATCGCGCCCTCGTGGACGCGATT
* *
19948453 TCGCTACAGTTGGTCATGT-AGAAAATAATTTTTTTGACGTTTCTAAGCAAATAGTGTC
66 TCGCTACAG-TGGTCATGTAAGAAAATAATTTTTTTGACGTTTCTAAGCAAATAGTATA
19948511 AAATCGC
1 AAATCGC
19948518 GCCCTCGTGG
Statistics
Matches: 119, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
123 23 0.19
124 81 0.68
125 15 0.13
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (123 bp):
AAATCGCTGATACCAGGATGCTATATGAGAAGAAATTGTAAAATCGCGCCCTCGTGGACGCGATT
TCGCTACAGTGGTCATGTAAGAAAATAATTTTTTTGACGTTTCTAAGCAAATAGTATA
Found at i:19954681 original size:24 final size:24
Alignment explanation
Indices: 19954651--19954711 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
19954641 TTTATGTCCC
* *
19954651 AAAATTACAGTGGATTTAAACTTG
1 AAAATTACAGTGGATTGAAACTAG
* * *
19954675 AAGATTATAGTGGATTGAACCTAG
1 AAAATTACAGTGGATTGAAACTAG
19954699 AAAATTACAGTGG
1 AAAATTACAGTGG
19954712 GGAAAATCCG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (24 bp):
AAAATTACAGTGGATTGAAACTAG
Found at i:19955262 original size:123 final size:122
Alignment explanation
Indices: 19955089--19955516 Score: 401
Period size: 123 Copynumber: 3.4 Consensus size: 122
19955079 TCTGGCGTTG
* * *
19955089 CAGTGAAACAAATTAAAGCTAAATGTAGCGAATCTTGTTTCCGT-AGCGTTGCAGTGGAATAGAT
1 CAGTG-AACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGA-CGTTGCAGTGGAATAGAT
* * *
19955153 TAAAGATGAAGTGGGGCAGATTAAAGCTGAAGACAGCGAATCCCATCTCCTTGGTGTTA
64 TAAAGCTGAAGTGGGGCAGATTAAAGCTGAAGACAGCGAATCCTATCTCCTTAGTGTTA
* * **
19955212 CAGTGAAACAGATTAAAACTAAAGGTAGCGAATCTTGTTTCCCTGACGTTGCAGCGGAGCAGATT
1 CAGTG-AACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGACGTTGCAGTGGAATAGATT
* * * * * *
19955277 AAAGCTGAAGGTGGCGAATCTTATCTCCTTGGTGTTAAAGCTGAAGACATCAAATCTTATTTCCC
65 AAAGCTGAA-GTGG-G--GC--A--------G-ATTAAAGCTGAAGACAGCGAATCCTATCT-CC
* * *
19955342 TAACT-TTG
114 TTAGTGTTA
* * * *
19955350 CAGTTGAACAGATTAAAGCTAAAGGCAGCGAATCTTGTTTCCCTGGCATTGTAGTGGAATAGATT
1 CAG-TGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGACGTTGCAGTGGAATAGATT
* * * * *
19955415 AAAGCTGAAGTGGAGCGGATTAAAGCTAAAGGCAGCGAATCCTATCTCCTTAGCGTTA
65 AAAGCTGAAGTGGGGCAGATTAAAGCTGAAGACAGCGAATCCTATCTCCTTAGTGTTA
*
19955473 CAGTGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTG
1 CAGTGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTG
19955517 GAATTGCAAC
Statistics
Matches: 243, Mismatches: 43, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
122 43 0.18
123 91 0.37
124 6 0.02
125 1 0.00
127 1 0.00
129 1 0.00
134 1 0.00
137 5 0.02
138 88 0.36
139 6 0.02
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (122 bp):
CAGTGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGACGTTGCAGTGGAATAGATTA
AAGCTGAAGTGGGGCAGATTAAAGCTGAAGACAGCGAATCCTATCTCCTTAGTGTTA
Found at i:19955391 original size:51 final size:51
Alignment explanation
Indices: 19955311--19955420 Score: 121
Period size: 51 Copynumber: 2.2 Consensus size: 51
19955301 CTCCTTGGTG
* * * *
19955311 TTAAAGCTGAAGACATCAAATCTTATTTCCCTAACTTTGCAGTTGAACAGA
1 TTAAAGCTAAAGACAGCAAATCTTATTTCCCTAACATTGCAGTGGAACAGA
* * * ** * *
19955362 TTAAAGCTAAAGGCAGCGAATCTTGTTTCCCTGGCATTGTAGTGGAATAGA
1 TTAAAGCTAAAGACAGCAAATCTTATTTCCCTAACATTGCAGTGGAACAGA
19955413 TTAAAGCT
1 TTAAAGCT
19955421 GAAGTGGAGC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (51 bp):
TTAAAGCTAAAGACAGCAAATCTTATTTCCCTAACATTGCAGTGGAACAGA
Found at i:19955607 original size:44 final size:44
Alignment explanation
Indices: 19955542--19956270 Score: 322
Period size: 44 Copynumber: 16.1 Consensus size: 44
19955532 AGACCAAGAC
* * * *
19955542 TGAAGATAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGAAGGT
1 TGAAGAT-ACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
19955587 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
1 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * *
19955631 TAAAGTTATTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGAT
1 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * *
19955675 T-AAAATGA-TGAATCCTATGC-CTCTGAAGTTGCAATAGG-TCGGAT
1 TGAAGAT-ACT-AATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGAT
* ** ** * * *
19955719 TAAATCTACCATAACAAGTCTTATCTCATTGAAATTGCAGTGAAGCAGAC
1 TGAAGATA-C-T---AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* *
19955769 TGAAGATAACCAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGAT
1 TGAAGAT-ACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * * *
19955814 TGAAGCTATTAATCCTATTTCCTTGAAGTTGTAGTGGAGCGGAT
1 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * *
19955858 TAAAACGATA--AATCCTATAC-CTCTGAAGTTGCAATAGG-TCGGAT
1 T-GAA-GATACTAATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGAT
* ** * * *
19955902 TAAATCTACCATAACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGTAGAC
1 TGAAGATA-C-T---AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * *
19955952 TGAAGATAACAAACCTTATCTCTCTAAAGTTGCAATGGAGCAGGT
1 TGAAGAT-ACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * *
19955997 TGAAGATACCAATCTTATCTCCCTGAAATTGCAGCGGAACAGAT
1 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * *
19956041 TGAAGTTA-TCAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGAT
1 TGAAGATACT-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * *
19956085 T-AA-A-ACGATGAATCCTATGC-CTCTGAAGTTGCAGTAGG-TC-GAAT
1 TGAAGATAC--T-AATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAG-AT
* ** * * *
19956129 TAAATCTACCATAACAAGTCTTACCTCCCTGAAATTGCAGTGGAGCAGAC
1 TGAAGATA-C-T---AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* ** * * * * *
19956179 TAAAGATAACCGACCTTATCTCCAT--AGTTGTAGTGGAGTAGGT
1 TGAAGAT-ACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
*
19956222 TGAAGATACTAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAT
1 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
19956266 TGAAG
1 TGAAG
19956271 CTATTAATTC
Statistics
Matches: 509, Mismatches: 126, Indels: 99
0.69 0.17 0.13
Matches are distributed among these distances:
41 1 0.00
42 15 0.03
43 29 0.06
44 266 0.52
45 94 0.18
46 8 0.02
47 4 0.01
48 1 0.00
49 13 0.03
50 74 0.15
51 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
Found at i:19955874 original size:227 final size:225
Alignment explanation
Indices: 19955538--19956389 Score: 697
Period size: 227 Copynumber: 3.8 Consensus size: 225
19955528 AAGCAGACCA
* * * * * * *
19955538 AGACTGAAGATAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGAAGGTTGAAGATACTAATCTT
1 AGACTGAAGATAACCAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATATTAATCCT
* *** * * * *
19955603 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTATTAATCCTAT-CTCCCTGAAGTTGTAGT-
66 ATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACGATAAATCCTATAC-CTCTGAAGTTGCAATA
** * * * *
19955666 GGAGCGGATTAAA-ATGAT-GAA-TCCTATGC-CTCTGAAGTTGCAATAGGTCGGATTAAATCT-
130 GG-GCGGATTAAATACCATACAAGTCCTAT-CTCCCTGAAGTTGC---A-GT-AGAGTAAA-CTG
* ** *
19955726 ACCATAACAAGTCTTATCTCAT-TGAAA-TTGCAGTGAAGC
187 AACATAACAAACCTTATCTC-TCT-AAAGTTGCAATGAAGC
*
19955765 AGACTGAAGATAACCAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCTATTAATCCT
1 AGACTGAAGATAACCAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATATTAATCCT
* * *
19955830 ATTTCCTTGAAGTTGTAGTGGAGCGGATTAAAACGATAAATCCTATACCTCTGAAGTTGCAATAG
66 ATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACGATAAATCCTATACCTCTGAAGTTGCAATAG
* * * *
19955895 GTCGGATTAAATCTACCATAACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGATA
131 GGCGGATTAAA--TACCAT-ACAAGTCCTATCTCCCTGAAGTTGCAGTAGAGTAAACTGAACATA
*
19955960 ACAAACCTTATCTCTCTAAAGTTGCAATGGAGC
193 ACAAACCTTATCTCTCTAAAGTTGCAATGAAGC
** * * * *
19955993 AGGTTGAAGAT-ACCAATCTTATCTCCCTGAAATTGCAGCGGAACAGATTGAAGTTATCAATCCT
1 AGACTGAAGATAACCAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATATTAATCCT
* * *
19956057 ATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACGATGAATCCTATGCCTCTGAAGTTGCAGTAG
66 ATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACGATAAATCCTATACCTCTGAAGTTGCAATAG
* * * * * * * * * *
19956122 GTCGAATTAAATCTACCATAACAAGTCTTACCTCCCTGAAATTGCAGTGGAGCAGACTAAAGATA
131 GGCGGATTAAA--TACCAT-ACAAGTCCTATCTCCCTGAAGTTGCAGTAGAGTAAACTGAACATA
** * * * * *
19956187 ACCGACCTTATCTC-C-ATAGTTGTAGTGGAGT
193 ACAAACCTTATCTCTCTAAAGTTGCAATGAAGC
** * * * * *
19956218 AGGTTGAAGAT-ACTAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTATTAATTCT
1 AGACTGAAGATAACCAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATATTAATCCT
* * * * ** * *
19956282 ATCTTCTTAAAGTTGTAATGGAGTGGATTAAAACGATGAATCCTA-ACCTCTGAAGTTGCAGTAG
66 ATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACGATAAATCCTATACCTCTGAAGTTGCAATAG
** * * * *
19956346 GTTGGATTAAATCTACCATAACGAGTCTTATCTCTCTAAAGTTG
131 GGCGGATTAAA--TACCAT-ACAAGTCCTATCTCCCTGAAGTTG
19956390 TAGTGGAGCA
Statistics
Matches: 533, Mismatches: 80, Indels: 27
0.83 0.12 0.04
Matches are distributed among these distances:
224 55 0.10
225 107 0.20
226 1 0.00
227 301 0.56
228 44 0.08
229 2 0.00
230 4 0.01
232 3 0.01
233 16 0.03
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (225 bp):
AGACTGAAGATAACCAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATATTAATCCT
ATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACGATAAATCCTATACCTCTGAAGTTGCAATAG
GGCGGATTAAATACCATACAAGTCCTATCTCCCTGAAGTTGCAGTAGAGTAAACTGAACATAACA
AACCTTATCTCTCTAAAGTTGCAATGAAGC
Found at i:19956045 original size:89 final size:88
Alignment explanation
Indices: 19955920--19956082 Score: 200
Period size: 89 Copynumber: 1.8 Consensus size: 88
19955910 CCATAACAAG
* * ** *
19955920 TCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGATAACAAACCTTATCTCTCTAAAGTTGC
1 TCTTATCTCCCTGAAATTGCAGCAGAACAGACTGAAGATAACAAACC-TATCTCCCTAAAGTTGC
19955985 AATGGAGCAGGTTGAAGATACCAA
65 AATGGAGCAGGTTGAAGATACCAA
* * * * * * *
19956009 TCTTATCTCCCTGAAATTGCAGCGGAACAGATTGAAGTTATCAATCCTATCTCCCTGAAGTTGTA
1 TCTTATCTCCCTGAAATTGCAGCAGAACAGACTGAAGATAACAAACCTATCTCCCTAAAGTTGCA
*
19956074 GTGGAGCAG
66 ATGGAGCAG
19956083 ATTAAAACGA
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
88 23 0.38
89 38 0.62
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (88 bp):
TCTTATCTCCCTGAAATTGCAGCAGAACAGACTGAAGATAACAAACCTATCTCCCTAAAGTTGCA
ATGGAGCAGGTTGAAGATACCAA
Found at i:19956088 original size:183 final size:182
Alignment explanation
Indices: 19955547--19956023 Score: 668
Period size: 183 Copynumber: 2.6 Consensus size: 182
19955537 AAGACTGAAG
** ** *
19955547 ATAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGAAGGTTGAAGAT-ACTAATCTTATCTCCCT
1 ATAACAAGTCTTATCTCCCTGAAGTTGCAGT-GAGAAGACTGAAGATAACAAATCTTATCTCCCT
* *
19955611 GAAGTTGCAGTGGAGCAGATTAAAGTTATTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATT
65 GAAGTTGCAGTGGAGCAGATTGAAGATATTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATT
* *
19955676 AAAATGATGAATCCTATGCCTCTGAAGTTGCAATAGGTCGGATTAAATCTACC
130 AAAATGATAAATCCTATACCTCTGAAGTTGCAATAGGTCGGATTAAATCTACC
** * * *
19955729 ATAACAAGTCTTATCTCATTGAAATTGCAGTGAAGCAGACTGAAGATAACCAATCTTATCTCCCT
1 ATAACAAGTCTTATCTCCCTGAAGTTGCAGTG-AGAAGACTGAAGATAACAAATCTTATCTCCCT
* * * *
19955794 GAAGTTGCAGCGGAGCAGATTGAAGCTATTAATCCTATTTCCTTGAAGTTGTAGTGGAGCGGATT
65 GAAGTTGCAGTGGAGCAGATTGAAGATATTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATT
*
19955859 AAAACGATAAATCCTATACCTCTGAAGTTGCAATAGGTCGGATTAAATCTACC
130 AAAATGATAAATCCTATACCTCTGAAGTTGCAATAGGTCGGATTAAATCTACC
* * *
19955912 ATAACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGATAACAAACCTTATCTCTCT
1 ATAACAAGTCTTATCTCCCTGAAGTTGCAGT-GAGAAGACTGAAGATAACAAATCTTATCTCCCT
* * * ** *
19955977 AAAGTTGCAATGGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAA
65 GAAGTTGCAGTGGAGCAGATTGAAGATATTAATCCTATCTCCCTGAA
19956024 ATTGCAGCGG
Statistics
Matches: 258, Mismatches: 34, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
181 1 0.00
182 37 0.14
183 219 0.85
184 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (182 bp):
ATAACAAGTCTTATCTCCCTGAAGTTGCAGTGAGAAGACTGAAGATAACAAATCTTATCTCCCTG
AAGTTGCAGTGGAGCAGATTGAAGATATTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTA
AAATGATAAATCCTATACCTCTGAAGTTGCAATAGGTCGGATTAAATCTACC
Found at i:19957405 original size:26 final size:25
Alignment explanation
Indices: 19957369--19957420 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
19957359 GGCCACCGCG
19957369 GATGGCGGCGCAGTCGCCGGTGACT
1 GATGGCGGCGCAGTCGCCGGTGACT
* * *
19957394 GATGGCCGGCGCGGTGGCTGGTGACT
1 GATGG-CGGCGCAGTCGCCGGTGACT
19957420 G
1 G
19957421 GAGCCTGGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.10, C:0.25, G:0.48, T:0.17
Consensus pattern (25 bp):
GATGGCGGCGCAGTCGCCGGTGACT
Found at i:19959423 original size:4 final size:4
Alignment explanation
Indices: 19959414--19959438 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
19959404 TAACAAGCAT
19959414 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
19959439 ACTAAAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:19959648 original size:19 final size:19
Alignment explanation
Indices: 19959623--19959673 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
19959613 GTATCGATAT
19959623 ATATAGATATGTATATAAA
1 ATATAGATATGTATATAAA
* * *
19959642 TTATAGAAATATATATAAA
1 ATATAGATATGTATATAAA
*
19959661 ATATAAATATGTA
1 ATATAGATATGTA
19959674 CATGTATAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (19 bp):
ATATAGATATGTATATAAA
Found at i:19960668 original size:16 final size:15
Alignment explanation
Indices: 19960630--19960669 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
19960620 ATCACCTTTG
19960630 TTTTTTTTCTTTTTA
1 TTTTTTTTCTTTTTA
*
19960645 TTTCTTTTTCTTTGTTC
1 TTT-TTTTTCTTT-TTA
19960662 TTTTTTTT
1 TTTTTTTT
19960670 TAAAGAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 14 0.64
17 5 0.23
ACGTcount: A:0.03, C:0.10, G:0.03, T:0.85
Consensus pattern (15 bp):
TTTTTTTTCTTTTTA
Found at i:19965724 original size:24 final size:24
Alignment explanation
Indices: 19965686--19965734 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
19965676 GCATCGGAGC
* * *
19965686 CAAGACAACATCGAAGTACGTAAT
1 CAAGACAACACCGAAATACATAAT
*
19965710 CAAGACTACACCGAAATACATAAT
1 CAAGACAACACCGAAATACATAAT
19965734 C
1 C
19965735 TAAATATAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.16
Consensus pattern (24 bp):
CAAGACAACACCGAAATACATAAT
Found at i:19973562 original size:24 final size:24
Alignment explanation
Indices: 19973535--19973586 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
19973525 TTAGTAAGTC
*
19973535 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
19973559 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
19973583 AAAT
1 AAAT
19973587 CTTTTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:19985476 original size:23 final size:24
Alignment explanation
Indices: 19985446--19985497 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
19985436 CACTCAATTA
19985446 TTAA-TTTTTTAAATTTAATCA-T
1 TTAATTTTTTTAAATTTAATCATT
* *
19985468 TTAATTTTTTTGAATTTAATTATT
1 TTAATTTTTTTAAATTTAATCATT
19985492 TTAATT
1 TTAATT
19985498 ACTCTTAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 4 0.15
23 15 0.58
24 7 0.27
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
TTAATTTTTTTAAATTTAATCATT
Found at i:19987428 original size:16 final size:18
Alignment explanation
Indices: 19987402--19987434 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
19987392 AATTATAATT
19987402 TTTTATATAAT-TTTTTG
1 TTTTATATAATATTTTTG
19987419 TTTT-TATAATATTTTT
1 TTTTATATAATATTTTT
19987435 ATAATTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (18 bp):
TTTTATATAATATTTTTG
Found at i:19992443 original size:23 final size:19
Alignment explanation
Indices: 19992416--19992463 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
19992406 AAAATAGCAG
* *
19992416 AAGAAGAGAGAGAGAAGAG-
1 AAGAA-AGAAAGAAAAGAGA
19992435 AAGAAAGAAAGAAAAGAGA
1 AAGAAAGAAAGAAAAGAGA
19992454 AAGAAAGAAA
1 AAGAAAGAAA
19992464 ATGTATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAAGAAAAGAGA
Found at i:19992456 original size:15 final size:15
Alignment explanation
Indices: 19992436--19992464 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
19992426 AGAGAAGAGA
19992436 AGAAAGAAAGAAAAG
1 AGAAAGAAAGAAAAG
19992451 AGAAAGAAAGAAAA
1 AGAAAGAAAGAAAA
19992465 TGTATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AGAAAGAAAGAAAAG
Found at i:19999262 original size:4 final size:4
Alignment explanation
Indices: 19999255--19999294 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
19999245 TCTATTTTGC
19999255 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT
19999295 CCCTTCCCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTCT
Found at i:19999361 original size:19 final size:19
Alignment explanation
Indices: 19999333--19999371 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
19999323 CTCCTTCTCA
*
19999333 TTCTTCTTC-TTCTCTTCTT
1 TTCTTATTCTTTCTC-TCTT
19999352 TTCTTATTCTTTCTCTCTT
1 TTCTTATTCTTTCTCTCTT
19999371 T
1 T
19999372 CGGCTAGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (19 bp):
TTCTTATTCTTTCTCTCTT
Found at i:19999883 original size:14 final size:14
Alignment explanation
Indices: 19999860--19999889 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
19999850 TTAAAAGAAT
*
19999860 AATTTTTTTTAAAA
1 AATTTCTTTTAAAA
19999874 AATTTCTTTTAAAA
1 AATTTCTTTTAAAA
19999888 AA
1 AA
19999890 GTTGACTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTTCTTTTAAAA
Found at i:20000844 original size:7 final size:7
Alignment explanation
Indices: 20000826--20000891 Score: 50
Period size: 7 Copynumber: 9.3 Consensus size: 7
20000816 CCATTGCCTT
20000826 TTCTTT-
1 TTCTTTC
20000832 TTCTTTC
1 TTCTTTC
20000839 TTCTTT-
1 TTCTTTC
20000845 TAT-TTTC
1 T-TCTTTC
20000852 TTCTCTTCTC
1 -T-TCTT-TC
*
20000862 TTCTCTC
1 TTCTTTC
20000869 TTCTTTC
1 TTCTTTC
20000876 TTCTTTTC
1 TTC-TTTC
20000884 TT-TTTC
1 TTCTTTC
20000890 TT
1 TT
20000892 TTATTTTTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
6 16 0.32
7 18 0.36
8 11 0.22
9 3 0.06
10 2 0.04
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.73
Consensus pattern (7 bp):
TTCTTTC
Found at i:20001470 original size:29 final size:29
Alignment explanation
Indices: 20001438--20001510 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
20001428 GGAAAACTTG
*
20001438 AGGGCCAAAATATAAATTGTAAAAAATTA
1 AGGGCCAAAATATAAATAGTAAAAAATTA
* * *
20001467 AGGGTCAAAATTTAAATAGTAAAAAGTTA
1 AGGGCCAAAATATAAATAGTAAAAAATTA
*
20001496 AGGGCAAAAATATAA
1 AGGGCCAAAATATAA
20001511 TTAATAAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.55, C:0.05, G:0.16, T:0.23
Consensus pattern (29 bp):
AGGGCCAAAATATAAATAGTAAAAAATTA
Found at i:20002300 original size:76 final size:75
Alignment explanation
Indices: 20002100--20002651 Score: 530
Period size: 76 Copynumber: 7.3 Consensus size: 75
20002090 ATTTAAAAAA
* * * * * * *
20002100 AAAATAACTTGGCATGCGACCTGAGGCTTAACTCACCTCTCAAATTATGAGTTGACCTTTGAAAA
1 AAAATACCTCGGCGTGCGACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTGATCTTTGAAAA
20002165 AA-AAATT-G
66 AAGAAATTGG
* *** * * * * *
20002173 AAAATAGCTCAATGTGCAACCCAAAGCTTAACTCACCTCTCGGATTATGAGTTGATCTTTGAAAA
1 AAAATACCTCGGCGTGCGACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTGATCTTTGAAAA
20002238 ACAGAAATTGG
66 A-AGAAATTGG
* * * * *
20002249 AAAGTACCTTGCCGTGCGACTCGAGGCTCAACTCACCTATCAGATTATGAGTTGATCTTTGAAAA
1 AAAATACCTCGGCGTGCGACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTGATCTTTGAAAA
20002314 ATAGAAATT-G
66 A-AGAAATTGG
* * * *
20002324 AAAATAACTCGGCGTGCGAACTGAGGCTCAACTCACGTCTC-GAATTATGAGTTGATCTTTG--A
1 AAAATACCTCGGCGTGCGACCCGAGGCTCAACTCACCTCTCAG-ATTATGAGTTGATCTTTGAAA
*
20002386 AAA-TAA-TGG
65 AAAGAAATTGG
* *
20002395 AAAATACCTCGGCGTGCGACCCGAGGCTCAACTCACCTCTCAAATTATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGCGACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTGA--TCTTTGAA
*
20002460 AAATAGAAATTAG
64 AAA-AGAAATTGG
* * * * * * *
20002473 -AAATAACTCGGCGTGTGACCTGAGGCTCAACTCACTTATCGGATTATGAGTTGATCTTTAAAAA
1 AAAATACCTCGGCGTGCGACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTGATCTTTGAAAA
* *
20002537 ACAAAAACTGG
66 A-AGAAATTGG
* * * * *
20002548 AAAATACCTCGGCGTACAACCCGAGGCTCAACTCACTTCTC-GAATTATGAGTTAATTTTTTTGA
1 AAAATACCTCGGCGTGCGACCCGAGGCTCAACTCACCTCTCAG-ATTATGAGTTGA--TCTTTG-
20002612 AAAGAAAGAAATTGG
62 AAA-AAAGAAATTGG
*
20002627 AAAATACCTCGACGTGCGACCCGAG
1 AAAATACCTCGGCGTGCGACCCGAG
20002652 TGTAATGACC
Statistics
Matches: 388, Mismatches: 72, Indels: 32
0.79 0.15 0.07
Matches are distributed among these distances:
70 1 0.00
71 52 0.13
72 1 0.00
73 61 0.16
74 2 0.01
75 75 0.19
76 107 0.28
77 49 0.13
78 6 0.02
79 32 0.08
80 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (75 bp):
AAAATACCTCGGCGTGCGACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTGATCTTTGAAAA
AAGAAATTGG
Done.