Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 74 of 210
Found at i:25926560 original size:13 final size:13
Alignment explanation
Indices: 25926542--25926566 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25926532 AAATTCAATG
25926542 TCAATTTCATATA
1 TCAATTTCATATA
25926555 TCAATTTCATAT
1 TCAATTTCATAT
25926567 CCAAACATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (13 bp):
TCAATTTCATATA
Found at i:25927433 original size:20 final size:20
Alignment explanation
Indices: 25927376--25927434 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
25927366 CATTAGTAAT
* * *
25927376 AACAGAAATTTATCCGTATC
1 AACAGTAATTCATCCATATC
* *
25927396 AACAGTAA-CCTATACATATC
1 AACAGTAATTC-ATCCATATC
25927416 AACAGTAATTCATCCATAT
1 AACAGTAATTCATCCATAT
25927435 AATTACATAG
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (20 bp):
AACAGTAATTCATCCATATC
Found at i:25927943 original size:67 final size:67
Alignment explanation
Indices: 25927870--25928125 Score: 449
Period size: 67 Copynumber: 3.8 Consensus size: 67
25927860 AATAATTCAA
* * *
25927870 TTTCTCAAATCACATATATATAATCTATTCATTTAAATACATACATTTAAATACTCAATTCGCAT
1 TTTCTCAAATCACATATATATAATCAATTTAATTAAATACATACATTTAAATACTCAATTCGCAT
25927935 AC
66 AC
*
25927937 TTTCTCAAATCACATATATATAATCAATTTAATTAACTACATACATTTAAATACTCAATTCGCAT
1 TTTCTCAAATCACATATATATAATCAATTTAATTAAATACATACATTTAAATACTCAATTCGCAT
25928002 AC
66 AC
*
25928004 TTTCTCAAATCACATATATATAATCAATTTAATTAACTACATACATTTAAATACTCAATTCGCAT
1 TTTCTCAAATCACATATATATAATCAATTTAATTAAATACATACATTTAAATACTCAATTCGCAT
25928069 AC
66 AC
* *
25928071 TTTCTCAAATCACGTATATATAATCAATTTAATTAAATACATACATTTAATTACT
1 TTTCTCAAATCACATATATATAATCAATTTAATTAAATACATACATTTAAATACT
25928126 AATGCAATTG
Statistics
Matches: 182, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 182 1.00
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (67 bp):
TTTCTCAAATCACATATATATAATCAATTTAATTAAATACATACATTTAAATACTCAATTCGCAT
AC
Found at i:25927995 original size:31 final size:31
Alignment explanation
Indices: 25927960--25928063 Score: 93
Period size: 31 Copynumber: 3.2 Consensus size: 31
25927950 ATATATATAA
25927960 TCAATTTAATTAACTACATACATTTAAATAC
1 TCAATTTAATTAACTACATACATTTAAATAC
* * * * * *
25927991 TCAATTCGCATACTT-TCTCAAATCACATATATATAA
1 TCAATT----TAATTAACT-ACAT-ACATTTAAATAC
25928027 TCAATTTAATTAACTACATACATTTAAATAC
1 TCAATTTAATTAACTACATACATTTAAATAC
25928058 TCAATT
1 TCAATT
25928064 CGCATACTTT
Statistics
Matches: 54, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
31 21 0.39
32 7 0.13
33 2 0.04
34 2 0.04
35 7 0.13
36 15 0.28
ACGTcount: A:0.42, C:0.18, G:0.01, T:0.38
Consensus pattern (31 bp):
TCAATTTAATTAACTACATACATTTAAATAC
Found at i:25934710 original size:8 final size:8
Alignment explanation
Indices: 25934692--25934727 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
25934682 TGAACAATGA
25934692 AAAACTTAG
1 AAAA-TTAG
*
25934701 AAATTTAG
1 AAAATTAG
25934709 AAAATTAG
1 AAAATTAG
25934717 AAAATTAG
1 AAAATTAG
25934725 AAA
1 AAA
25934728 TGTTGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 22 0.88
9 3 0.12
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.25
Consensus pattern (8 bp):
AAAATTAG
Found at i:25936052 original size:8 final size:8
Alignment explanation
Indices: 25936039--25936063 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
25936029 TAACAGGGGT
25936039 CACACGGC
1 CACACGGC
25936047 CACACGGC
1 CACACGGC
25936055 CACACGGC
1 CACACGGC
25936063 C
1 C
25936064 TAGGCCATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.52, G:0.24, T:0.00
Consensus pattern (8 bp):
CACACGGC
Found at i:25940218 original size:27 final size:27
Alignment explanation
Indices: 25940180--25940242 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
25940170 ACATGTCAAA
*
25940180 AAATGGAAGCCTTTGTGGCAATCTAAG
1 AAATGGAAGCCTTTGCGGCAATCTAAG
*
25940207 AAATGGAAGCCTTTGCGGTAATCTAAG
1 AAATGGAAGCCTTTGCGGCAATCTAAG
25940234 AAATGGAAG
1 AAATGGAAG
25940243 TATTTTTTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.24
Consensus pattern (27 bp):
AAATGGAAGCCTTTGCGGCAATCTAAG
Found at i:25952139 original size:2 final size:2
Alignment explanation
Indices: 25952103--25952128 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25952093 AATGTTCTTT
25952103 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
25952129 CATCAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25953417 original size:6 final size:6
Alignment explanation
Indices: 25953406--25953434 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
25953396 AATTTTTATC
25953406 TTTTTA TTTTTA TTTTTA TTTTT- TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
25953435 AAATTCATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:25953422 original size:20 final size:18
Alignment explanation
Indices: 25953397--25953433 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
25953387 AAATTGATTA
25953397 ATTTTTATCTTTTTATTTTT
1 ATTTTTAT-TTTTT-TTTTT
25953417 ATTTTTATTTTTTTTTT
1 ATTTTTATTTTTTTTTT
25953434 AAAATTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.84
Consensus pattern (18 bp):
ATTTTTATTTTTTTTTTT
Found at i:25958729 original size:88 final size:88
Alignment explanation
Indices: 25958221--25958708 Score: 784
Period size: 88 Copynumber: 5.5 Consensus size: 88
25958211 AGCAGATCGG
*
25958221 TAAAAATAGCAGATCTTGCCTTCTTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
25958286 -CCTGAGGTTGCAGCGGAGCAGGT
66 CCCTG-GGTTGCAGCGGAGCAGGT
*
25958309 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACATCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
25958374 CCCTGGGTTGCAGCGAAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * *
25958397 TAAAAATAGCAGATCTTACCTTCTTGCGCCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
25958462 -CCTGAGGTTGCAGCGGAGCAGGT
66 CCCTG-GGTTGCAGCGGAGCAGGT
* * * * *
25958485 TAAAAATAGCAGATCTTGCCTTCCTACGCC-AGCAGCGAAGCAGATCGAAGACATCAACCTTTCC
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGA-CAGCGAAGCAGATCGAAGACACCAGCCTTGCC
25958549 TCCCTGGGTTGCAGCGGAGCAGGT
65 TCCCTGGGTTGCAGCGGAGCAGGT
25958573 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
25958638 CCCTGGGTTGCAGTGGAGCAGGC
66 CCCTGGGTTGCAGCGGAGCAGGT
* *
25958661 TAAAAATAGTAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGA
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
25958709 TAACCCCAGC
Statistics
Matches: 370, Mismatches: 25, Indels: 10
0.91 0.06 0.02
Matches are distributed among these distances:
87 5 0.01
88 356 0.96
89 9 0.02
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (88 bp):
TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTGGGTTGCAGCGGAGCAGGT
Found at i:25958768 original size:44 final size:42
Alignment explanation
Indices: 25958719--25958960 Score: 233
Period size: 44 Copynumber: 5.6 Consensus size: 42
25958709 TAACCCCAGC
* **
25958719 CCTATCTCCCTAGTCAACAGTGGAATAGGTTACAGATTTTGAAT
1 CCTATCTCCCT-GTCAGCAGTGGAATAGGTTA-AGATTGAGAAT
25958763 CCTATCTCCCTGATCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTG-TCAGCAGTGGAATAGGTT-AAGATTGAGAAT
* * * *
25958807 TCTATCTCCTTGGGCAGCAGTGGAATAGATT-A-A---AGAAT
1 CCTATCTCCCT-GTCAGCAGTGGAATAGGTTAAGATTGAGAAT
* * * *
25958845 CCTATTTCCCTGGACAGTAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCT-GTCAGCAGTGGAATAGGTT-AAGATTGAGAAT
25958889 CCTATCTCCCTGATCAGCAGTGGAATAGGTTAAAGATTGAGAAT
1 CCTATCTCCCTG-TCAGCAGTGGAATAGGTT-AAGATTGAGAAT
* * *
25958933 TCTATCTCCCTGGGCAGCAGTGAAATAG
1 CCTATCTCCCT-GTCAGCAGTGGAATAG
25958961 ATTGAAAATT
Statistics
Matches: 166, Mismatches: 21, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
38 30 0.18
40 1 0.01
41 2 0.01
42 1 0.01
43 2 0.01
44 127 0.77
45 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (42 bp):
CCTATCTCCCTGTCAGCAGTGGAATAGGTTAAGATTGAGAAT
Found at i:25958867 original size:38 final size:38
Alignment explanation
Indices: 25958802--25958924 Score: 113
Period size: 38 Copynumber: 3.1 Consensus size: 38
25958792 TTGAAGATTG
* * *
25958802 AGAATTCTATCTCCTTGGGCAGCAGTGGAATAGATTAA
1 AGAATCCTATCTCCCTGGACAGCAGTGGAATAGATTAA
* * *
25958840 AGAATCCTATTTCCCTGGACAGTAGTGGAATAGGTTAAA
1 AGAATCCTATCTCCCTGGACAGCAGTGGAATAGATT-AA
*
25958879 GATTGTGAATCCTATCTCCCT-GATCAGCAGTGGAATAGGTTAA
1 -A----GAATCCTATCTCCCTGGA-CAGCAGTGGAATAGATTAA
25958922 AGA
1 AGA
25958925 TTGAGAATTC
Statistics
Matches: 70, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
38 32 0.46
39 2 0.03
40 1 0.01
42 1 0.01
43 4 0.06
44 30 0.43
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (38 bp):
AGAATCCTATCTCCCTGGACAGCAGTGGAATAGATTAA
Found at i:25958867 original size:82 final size:82
Alignment explanation
Indices: 25958759--25958924 Score: 235
Period size: 82 Copynumber: 2.0 Consensus size: 82
25958749 TACAGATTTT
* * * *
25958759 GAATCCTATCTCCCTGATCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCTTGGGCAG
1 GAATCCTATCTCCCTGATCAGCAGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGAGCAG
25958824 CAGTGGAATAGATTAAA
66 CAGTGGAATAGATTAAA
* * * *
25958841 GAATCCTATTTCCCTGGA-CAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGATCA
1 GAATCCTATCTCCCT-GATCAGCAGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGAGCA
*
25958905 GCAGTGGAATAGGTTAAA
65 GCAGTGGAATAGATTAAA
25958923 GA
1 GA
25958925 TTGAGAATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
82 72 0.97
83 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (82 bp):
GAATCCTATCTCCCTGATCAGCAGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGAGCAG
CAGTGGAATAGATTAAA
Found at i:25958882 original size:126 final size:126
Alignment explanation
Indices: 25958737--25958963 Score: 409
Period size: 126 Copynumber: 1.8 Consensus size: 126
25958727 CCTAGTCAAC
* * *
25958737 AGTGGAATAGGTTACAGATTTTGAATCCTATCTCCCTGATCAGCAGTGGAATAGGTTGAAGATTG
1 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGATCAGCAGTGGAATAGGTTAAAGATTG
* *
25958802 AGAATTCTATCTCCTTGGGCAGCAGTGGAATAGATTAAAGAATCCTATTTCCCTGGACAGT
66 AGAATTCTATCTCCCTGGGCAGCAGTGAAATAGATTAAAGAATCCTATTTCCCTGGACAGT
25958863 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGATCAGCAGTGGAATAGGTTAAAGATTG
1 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGATCAGCAGTGGAATAGGTTAAAGATTG
25958928 AGAATTCTATCTCCCTGGGCAGCAGTGAAATAGATT
66 AGAATTCTATCTCCCTGGGCAGCAGTGAAATAGATT
25958964 GAAAATTGTA
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 96 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (126 bp):
AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGATCAGCAGTGGAATAGGTTAAAGATTG
AGAATTCTATCTCCCTGGGCAGCAGTGAAATAGATTAAAGAATCCTATTTCCCTGGACAGT
Found at i:25958999 original size:88 final size:88
Alignment explanation
Indices: 25958840--25959007 Score: 205
Period size: 88 Copynumber: 1.9 Consensus size: 88
25958830 AATAGATTAA
* * * *
25958840 AGAATCCTATTTCCCTGGACAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGATCA
1 AGAATCCTATCTCCCTGGACAGCAGTGAAATAGATTAAAGATTGTGAATCCTATCTCCCTGATCA
25958905 GCAGTGGAATAGGTTAAAGATTG
66 GCAGTGGAATAGGTTAAAGATTG
* * * * *
25958928 AGAATTCTATCTCCCTGGGCAGCAGTGAAATAGATTGAAA-ATTGT-AAGTCCTCTCTCTCTGGT
1 AGAATCCTATCTCCCTGGACAGCAGTGAAATAGATT-AAAGATTGTGAA-TCCTATCTCCCTGAT
* *
25958991 CAGTAGTGGAGTAGGTT
64 CAGCAGTGGAATAGGTT
25959008 GAAAATAGCA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 2 0.03
88 62 0.93
89 3 0.04
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (88 bp):
AGAATCCTATCTCCCTGGACAGCAGTGAAATAGATTAAAGATTGTGAATCCTATCTCCCTGATCA
GCAGTGGAATAGGTTAAAGATTG
Found at i:25961127 original size:28 final size:27
Alignment explanation
Indices: 25961053--25961121 Score: 77
Period size: 26 Copynumber: 2.5 Consensus size: 27
25961043 TATTATTTAA
* *
25961053 TTATTTTTTTAATCTATATGTATATAT
1 TTATTTTTTTAATCGACATGTATATAT
*
25961080 TTATTTTTTT-ATGGACATGTATATACAT
1 TTATTTTTTTAATCGACATGTATAT--AT
25961108 TTATTTCTTTTAAT
1 TTATTT-TTTTAAT
25961122 GAATGTTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.31
27 10 0.29
28 8 0.23
29 4 0.11
30 2 0.06
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (27 bp):
TTATTTTTTTAATCGACATGTATATAT
Found at i:25972948 original size:19 final size:19
Alignment explanation
Indices: 25972910--25972948 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
25972900 AAATTAATAA
**
25972910 CAAATTTGATTACGGCGGG
1 CAAATTTGATTACAACGGG
*
25972929 CAAATTTGATTACAATGGG
1 CAAATTTGATTACAACGGG
25972948 C
1 C
25972949 GACAGTGATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (19 bp):
CAAATTTGATTACAACGGG
Found at i:25973898 original size:20 final size:21
Alignment explanation
Indices: 25973873--25973911 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25973863 TTAGATTTAA
25973873 ATTTTTA-AAAATAAAAAAAT
1 ATTTTTAGAAAATAAAAAAAT
*
25973893 ATTTTTAGAAATTAAAAAA
1 ATTTTTAGAAAATAAAAAA
25973912 GCCTCTGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (21 bp):
ATTTTTAGAAAATAAAAAAAT
Found at i:25979493 original size:17 final size:17
Alignment explanation
Indices: 25979471--25979503 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25979461 AAAGGTCCTT
25979471 CTTACCAGGAATGACCC
1 CTTACCAGGAATGACCC
*
25979488 CTTACCGGGAATGACC
1 CTTACCAGGAATGACC
25979504 ACCATTTCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.18
Consensus pattern (17 bp):
CTTACCAGGAATGACCC
Found at i:25979828 original size:16 final size:17
Alignment explanation
Indices: 25979796--25979835 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
25979786 TTATATCAAC
*
25979796 AAAA-TAAAATAATTTT
1 AAAATTAAAATAACTTT
25979812 AAAATTAAAA-AACTTT
1 AAAATTAAAATAACTTT
25979828 AAAATTAA
1 AAAATTAA
25979836 CTTAATTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATTAAAATAACTTT
Found at i:25998741 original size:18 final size:18
Alignment explanation
Indices: 25998714--25998765 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
25998704 GTTCCCCCTA
* * *
25998714 AGAAGGAAGATGCCGGTG
1 AGAAGAAAGACGCCGGAG
*
25998732 AGAAGAAAGACGGCGGAG
1 AGAAGAAAGACGCCGGAG
*
25998750 AGAAGAATGACGCCGG
1 AGAAGAAAGACGCCGG
25998766 CGGTGATAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.42, T:0.06
Consensus pattern (18 bp):
AGAAGAAAGACGCCGGAG
Found at i:25998862 original size:39 final size:41
Alignment explanation
Indices: 25998809--25998933 Score: 154
Period size: 39 Copynumber: 3.1 Consensus size: 41
25998799 TGCTGCAGGC
* *
25998809 GGCGGCGGGAAGAAGGGAGGAGGA-G-GTGGAG-AGAAGGAA
1 GGCGGC-GGAAGAAGGAAGGAGGAGGCGGGGAGAAGAAGGAA
25998848 GGCGGCGAGAAGAAGGAAGGAGGAGGCGGGGAGAAGAAGGAA
1 GGCGGCG-GAAGAAGGAAGGAGGAGGCGGGGAGAAGAAGGAA
*
25998890 GGCGGCGGAGAGAA-GAAGGA--AGGCGGGGAGAAGAAAGAA
1 GGCGGCGGA-AGAAGGAAGGAGGAGGCGGGGAGAAGAAGGAA
25998929 GGCGG
1 GGCGG
25998934 TGGTGAAGCC
Statistics
Matches: 78, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
38 1 0.01
39 44 0.56
40 1 0.01
41 13 0.17
42 19 0.24
ACGTcount: A:0.36, C:0.07, G:0.56, T:0.01
Consensus pattern (41 bp):
GGCGGCGGAAGAAGGAAGGAGGAGGCGGGGAGAAGAAGGAA
Found at i:25998863 original size:18 final size:19
Alignment explanation
Indices: 25998809--25998933 Score: 105
Period size: 21 Copynumber: 6.3 Consensus size: 19
25998799 TGCTGCAGGC
25998809 GGCGGCGG-GAAGAAGGGAGGA
1 GGCGGCGGAGAAGAA-GGA--A
* *
25998830 GGAGGTGGAG-AGAAGGAA
1 GGCGGCGGAGAAGAAGGAA
25998848 GGCGGCGAGAAGAAGGAAGGAGGA
1 GGCGGCG-G-AGAA-GAAGGA--A
25998872 GGCGG-GGAGAAGAAGGAA
1 GGCGGCGGAGAAGAAGGAA
25998890 GGCGGCGGAGAGAAGAAGGAA
1 GGCGGC-G-GAGAAGAAGGAA
*
25998911 GGCGG-GGAGAAGAAAGAA
1 GGCGGCGGAGAAGAAGGAA
25998929 GGCGG
1 GGCGG
25998934 TGGTGAAGCC
Statistics
Matches: 89, Mismatches: 5, Indels: 23
0.76 0.04 0.20
Matches are distributed among these distances:
18 28 0.31
19 2 0.02
20 12 0.13
21 32 0.36
22 8 0.09
23 1 0.01
24 6 0.07
ACGTcount: A:0.36, C:0.07, G:0.56, T:0.01
Consensus pattern (19 bp):
GGCGGCGGAGAAGAAGGAA
Found at i:26000370 original size:15 final size:15
Alignment explanation
Indices: 26000344--26000384 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
26000334 TATAAATAAA
26000344 TTAAAA-ATTAAGTG
1 TTAAAATATTAAGTG
*
26000358 TTAAAATATTAAGTT
1 TTAAAATATTAAGTG
26000373 TTGAAAAT-TTAA
1 TT-AAAATATTAA
26000385 TTACTAAACG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 6 0.25
15 13 0.54
16 5 0.21
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (15 bp):
TTAAAATATTAAGTG
Found at i:26003489 original size:23 final size:23
Alignment explanation
Indices: 26003423--26003489 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
26003413 AAATATAAAA
* *
26003423 ATAATATATTTGAAACAATTTAAT
1 ATAAAATATTTAAAAC-ATTTAAT
* *
26003447 ATAAAGTA-TTAAATAAATTTAAT
1 ATAAAATATTTAAA-ACATTTAAT
26003470 ATAAAATATTTAAAACATTT
1 ATAAAATATTTAAAACATTT
26003490 TATTTTAANN
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 23 0.66
24 12 0.34
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (23 bp):
ATAAAATATTTAAAACATTTAAT
Found at i:26003602 original size:61 final size:61
Alignment explanation
Indices: 26003535--26003650 Score: 189
Period size: 61 Copynumber: 1.9 Consensus size: 61
26003525 NNNNNNNNNT
26003535 AAATTATATATTATTATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAATATGATA
1 AAATTATATATTATTATTTTTATTAAATTATATTTAATAATAATCT-TATTAAAATATGATA
* * *
26003596 AAATTATTTATTTTTATTTTTATTAAATTATATTTAATATTAATCTTATTAAAAT
1 AAATTATATATTATTATTTTTATTAAATTATATTTAATAATAATCTTATTAAAAT
26003651 TTAATAACAA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
61 50 0.98
62 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (61 bp):
AAATTATATATTATTATTTTTATTAAATTATATTTAATAATAATCTTATTAAAATATGATA
Found at i:26003716 original size:16 final size:16
Alignment explanation
Indices: 26003691--26003725 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26003681 TTACTGATTG
26003691 CAACTCTATTCCACTA
1 CAACTCTATTCCACTA
* *
26003707 CAACTTTATTCCATTA
1 CAACTCTATTCCACTA
26003723 CAA
1 CAA
26003726 TCCTATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (16 bp):
CAACTCTATTCCACTA
Found at i:26008716 original size:18 final size:19
Alignment explanation
Indices: 26008695--26008731 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
26008685 CTCGAAAAGT
*
26008695 ATATTGTGTGA-TGTGATG
1 ATATTATGTGATTGTGATG
26008713 ATATTATGTGATTGTGATG
1 ATATTATGTGATTGTGATG
26008732 TTTGTGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (19 bp):
ATATTATGTGATTGTGATG
Found at i:26009006 original size:22 final size:22
Alignment explanation
Indices: 26008978--26009020 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26008968 ATATATAGCA
26008978 GTTTATCTA-CAATTATGTGGTT
1 GTTTATC-AGCAATTATGTGGTT
26009000 GTTTATCAGCAATTATGTGGT
1 GTTTATCAGCAATTATGTGGT
26009021 GGCTTGTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.23, C:0.09, G:0.21, T:0.47
Consensus pattern (22 bp):
GTTTATCAGCAATTATGTGGTT
Found at i:26009858 original size:17 final size:17
Alignment explanation
Indices: 26009836--26009872 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
26009826 CTATTTGGCT
26009836 CGTGTGGGCCATACAGG
1 CGTGTGGGCCATACAGG
* *
26009853 CGTGTGGGTCATACGGG
1 CGTGTGGGCCATACAGG
26009870 CGT
1 CGT
26009873 ATGTTACACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.14, C:0.22, G:0.43, T:0.22
Consensus pattern (17 bp):
CGTGTGGGCCATACAGG
Found at i:26030601 original size:3 final size:3
Alignment explanation
Indices: 26030595--26030637 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
26030585 ATTGTTGTTG
26030595 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26030638 AACTATAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26032952 original size:138 final size:138
Alignment explanation
Indices: 26032700--26032980 Score: 465
Period size: 138 Copynumber: 2.0 Consensus size: 138
26032690 TAGAAAAATG
* *
26032700 AATTACATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTACATTCCTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
26032765 TATAATTGTTTATATTAATAAATTTGGGAAAATATATACAATTAATATTTTGTATGAAT-AAAGT
66 TATAATTATTTATATTAATAAATTCGGGAAAATATATACAATTAATATTTTGTATGAATCAAA-T
26032829 TCATATATT
130 TCATATATT
* *
26032838 AATTATATTCCTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTACATTCCTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
26032903 TATAATTATTTTTATTAATAAATTCGGTAAAATATATACAATTAGTATTTTGTATGAATCAAATT
66 TATAATTATTTATATTAATAAATTCGGGAAAATATATACAATTAATATTTTGTATGAATCAAATT
26032968 CATATATT
131 CATATATT
26032976 AATTA
1 AATTA
26032981 ATTATATCTA
Statistics
Matches: 133, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
138 130 0.98
139 3 0.02
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (138 bp):
AATTACATTCCTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAATTATTTATATTAATAAATTCGGGAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:26036597 original size:51 final size:51
Alignment explanation
Indices: 26036478--26036657 Score: 175
Period size: 51 Copynumber: 3.5 Consensus size: 51
26036468 GATGGTTACG
* * * * * **
26036478 TGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGA-A-TGATAGGTTGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-ATTGATCACA
* * *
26036528 TGTGTAGTACTATGTGCAGGTTACTATGCGTACCGGATAGTTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTATTGATCACA
* * * * * * *
26036579 TGTGTAGTACTATATGCAGGCTACCACGTGTATCGGATGGTATTGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTATTGATCACA
*
26036630 TGTGTAATACTATGTGCAGGCTACTATG
1 TGTGTAGTACTATGTGCAGGCTACTATG
26036658 TGAACCGAAC
Statistics
Matches: 104, Mismatches: 24, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
50 33 0.32
51 70 0.67
52 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTATTGATCACA
Found at i:26036602 original size:101 final size:102
Alignment explanation
Indices: 26036475--26036657 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 102
26036465 AGTGATGGTT
* * ** *
26036475 ACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGAAT-G-ATAGGTTGCATGTGTAGTAC
1 ACGTGTGTAGTACTATATGCAAGCTACCACGTGTACCGG-ATGGTATAGGTCACATGTGTAATAC
*
26036538 TATGTGCAGGTTACTATGCGTACCGGATAGTTTTGATC
65 TATGTGCAGGCTACTATGCGTACCGGATAGTTTTGATC
* * *
26036576 ACGTGTGTAGTACTATATGCAGGCTACCACGTGTATCGGATGGTATTGGTCACATGTGTAATACT
1 ACGTGTGTAGTACTATATGCAAGCTACCACGTGTACCGGATGGTATAGGTCACATGTGTAATACT
26036641 ATGTGCAGGCTACTATG
66 ATGTGCAGGCTACTATG
26036658 TGAACCGAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
100 2 0.03
101 36 0.51
102 33 0.46
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (102 bp):
ACGTGTGTAGTACTATATGCAAGCTACCACGTGTACCGGATGGTATAGGTCACATGTGTAATACT
ATGTGCAGGCTACTATGCGTACCGGATAGTTTTGATC
Found at i:26036676 original size:102 final size:101
Alignment explanation
Indices: 26036475--26036676 Score: 237
Period size: 102 Copynumber: 2.0 Consensus size: 101
26036465 AGTGATGGTT
* * ** *
26036475 ACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGAATGATAGGTTGCATGTGTAGTACTA
1 ACGTGTGTAGTACTATATGCAAGCTACCACGTGTACCGGAATGATAGGTCACATGTGTAATACTA
* * * * *
26036540 TGTGCAGGTTACTATGCGTACCGGATAGTTTTGATC
66 TGTGCAGGCTACTATGCGAACCGAACAGTATTGATC
* * *
26036576 ACGTGTGTAGTACTATATGCAGGCTACCACGTGTATCGG-ATGGTATTGGTCACATGTGTAATAC
1 ACGTGTGTAGTACTATATGCAAGCTACCACGTGTACCGGAAT-G-ATAGGTCACATGTGTAATAC
*
26036640 TATGTGCAGGCTACTATGTGAACCGAACA-TCATTGAT
64 TATGTGCAGGCTACTATGCGAACCGAACAGT-ATTGAT
26036677 TAGAAAGGTG
Statistics
Matches: 84, Mismatches: 14, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
100 2 0.02
101 37 0.44
102 45 0.54
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
ACGTGTGTAGTACTATATGCAAGCTACCACGTGTACCGGAATGATAGGTCACATGTGTAATACTA
TGTGCAGGCTACTATGCGAACCGAACAGTATTGATC
Found at i:26036730 original size:45 final size:45
Alignment explanation
Indices: 26036661--26036755 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
26036651 TACTATGTGA
* *
26036661 ACCGAACATCATTGATTAGAAAGGTGGTTGCTATATGTTGATTCC
1 ACCGAACATCATTGATTAGAAAGGTGGTTGCTATATGCTGAATCC
* *
26036706 ACCGGACATCATTGATTA-ATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAGA-AAGGTGGTTGCTATATGCTGAATCC
26036751 ACCGA
1 ACCGA
26036756 GTATCTGTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 1 0.02
45 43 0.98
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAGAAAGGTGGTTGCTATATGCTGAATCC
Found at i:26036825 original size:23 final size:22
Alignment explanation
Indices: 26036799--26036842 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
26036789 AATTGACTAA
26036799 GTGT-AATTGAATCATGAATATAG
1 GTGTGAATTGAAT--TGAATATAG
26036822 GTGTGGAATTGAATTGAATAT
1 GTGT-GAATTGAATTGAATAT
26036843 CGACTTAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.36
Consensus pattern (22 bp):
GTGTGAATTGAATTGAATATAG
Found at i:26040284 original size:29 final size:29
Alignment explanation
Indices: 26040251--26040614 Score: 728
Period size: 29 Copynumber: 12.6 Consensus size: 29
26040241 ACTAAATCAC
26040251 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040280 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040309 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040338 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040367 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040396 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040425 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040454 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040483 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040512 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040541 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040570 TTTAATATTAAGATAAAAATTAAATTAAA
1 TTTAATATTAAGATAAAAATTAAATTAAA
26040599 TTTAATATTAAGATAA
1 TTTAATATTAAGATAA
26040615 TCACCTTAAT
Statistics
Matches: 335, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 335 1.00
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (29 bp):
TTTAATATTAAGATAAAAATTAAATTAAA
Found at i:26045710 original size:16 final size:16
Alignment explanation
Indices: 26045691--26045725 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26045681 TGTTGAAAGA
*
26045691 ATTAAAGATTGAATGC
1 ATTAAAGAATGAATGC
*
26045707 ATTAAAGAATGATTGC
1 ATTAAAGAATGAATGC
26045723 ATT
1 ATT
26045726 GTATATGCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.34
Consensus pattern (16 bp):
ATTAAAGAATGAATGC
Found at i:26047345 original size:19 final size:18
Alignment explanation
Indices: 26047323--26047359 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
26047313 AAAAAAAATT
26047323 AAAATTCAAAATATTTATA
1 AAAATTCAAAA-ATTTATA
*
26047342 AAAATTCCAAAATTTATA
1 AAAATTCAAAAATTTATA
26047360 TTTTTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATTCAAAAATTTATA
Found at i:26047663 original size:22 final size:21
Alignment explanation
Indices: 26047638--26047678 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26047628 TTTCACTCTA
26047638 TTCAATTCGACACTACTCAAAT
1 TTCAATTC-ACACTACTCAAAT
* *
26047660 TTCATTTCACCCTACTCAA
1 TTCAATTCACACTACTCAA
26047679 TTCGAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.32, C:0.32, G:0.02, T:0.34
Consensus pattern (21 bp):
TTCAATTCACACTACTCAAAT
Found at i:26055633 original size:17 final size:19
Alignment explanation
Indices: 26055599--26055635 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
26055589 GAGGAAATGA
26055599 TCAACTATAATGATTTTTT
1 TCAACTATAATGATTTTTT
26055618 TCAACTAT-AT-ATTTTTT
1 TCAACTATAATGATTTTTT
26055635 T
1 T
26055636 ATCAGTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.57
Consensus pattern (19 bp):
TCAACTATAATGATTTTTT
Found at i:26059858 original size:13 final size:13
Alignment explanation
Indices: 26059836--26059874 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
26059826 GACCCGTCCC
26059836 ATATTAAATATAT
1 ATATTAAATATAT
*
26059849 ATATTTAATATAT
1 ATATTAAATATAT
* *
26059862 ATAATATATATAT
1 ATATTAAATATAT
26059875 TTGATTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
ATATTAAATATAT
Found at i:26063972 original size:15 final size:14
Alignment explanation
Indices: 26063949--26064001 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
26063939 GTTTTTATAT
*
26063949 TAATTATAAAGGTTA
1 TAATAATAAA-GTTA
26063964 TAATAATAAA-TTA
1 TAATAATAAAGTTA
*
26063977 TATATTATAAAGTTA
1 TA-ATAATAAAGTTA
*
26063992 TTATAATAAA
1 TAATAATAAA
26064002 AACAAAACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 5 0.16
14 14 0.44
15 13 0.41
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
TAATAATAAAGTTA
Found at i:26064525 original size:43 final size:44
Alignment explanation
Indices: 26064420--26064530 Score: 111
Period size: 44 Copynumber: 2.5 Consensus size: 44
26064410 TGTGTTATCG
* * **
26064420 TGTAAGACCACATCTGGGACGTTGACATCGATTTATGATTTATG
1 TGTAAGACCACGTCTGGGACGTTGACATCGATATATGATTTACA
* *
26064464 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGA-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGACATCGATATATGATTTACA
* *
26064507 TGTAAGACCACGTTTGGGATGTTG
1 TGTAAGACCACGTCTGGGACGTTG
26064531 GCATTGTACG
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
42 1 0.02
43 22 0.40
44 31 0.56
45 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGACATCGATATATGATTTACA
Found at i:26066487 original size:18 final size:18
Alignment explanation
Indices: 26066464--26066499 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26066454 CTTTTGAATA
26066464 AAAACTGTAGATAAACCT
1 AAAACTGTAGATAAACCT
*
26066482 AAAACTGTAGATAGACCT
1 AAAACTGTAGATAAACCT
26066500 CGTAGGGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22
Consensus pattern (18 bp):
AAAACTGTAGATAAACCT
Found at i:26069730 original size:4 final size:4
Alignment explanation
Indices: 26069721--26069747 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
26069711 AGAATTTTCA
26069721 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
26069748 GCTTCGTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:26082731 original size:29 final size:29
Alignment explanation
Indices: 26082689--26082756 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
26082679 CACGGCCTCA
*
26082689 CACATGGCCTATCACATGCCAGTGTGTCG
1 CACACGGCCTATCACATGCCAGTGTGTCG
* *
26082718 CACACGGCCTATCACATGGCAGTTTGTCG
1 CACACGGCCTATCACATGCCAGTGTGTCG
26082747 CACACAGGCC
1 CACAC-GGCC
26082757 CCAATTTTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
29 31 0.89
30 4 0.11
ACGTcount: A:0.22, C:0.34, G:0.24, T:0.21
Consensus pattern (29 bp):
CACACGGCCTATCACATGCCAGTGTGTCG
Found at i:26088301 original size:33 final size:33
Alignment explanation
Indices: 26088264--26088330 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
26088254 TACTTATAGG
26088264 ATCGGCACCGGAGGGTCGGTATACCACACACTT
1 ATCGGCACCGGAGGGTCGGTATACCACACACTT
26088297 ATCGGCACCGGAGGGTCGGTATACCACACACTT
1 ATCGGCACCGGAGGGTCGGTATACCACACACTT
26088330 A
1 A
26088331 CTTCTCAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (33 bp):
ATCGGCACCGGAGGGTCGGTATACCACACACTT
Found at i:26112478 original size:13 final size:13
Alignment explanation
Indices: 26112460--26112492 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
26112450 GACACACGCT
26112460 CGTGTGGTCAAGC
1 CGTGTGGTCAAGC
26112473 CGTGTGGTCAAGC
1 CGTGTGGTCAAGC
26112486 CGTGTGG
1 CGTGTGG
26112493 CTTACACGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.12, C:0.21, G:0.42, T:0.24
Consensus pattern (13 bp):
CGTGTGGTCAAGC
Found at i:26113558 original size:26 final size:25
Alignment explanation
Indices: 26113500--26113571 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 25
26113490 AGCAAGCCAT
*
26113500 ATCGGGAAGCTCCGGAGAGCCTTTA
1 ATCGGGAAGCTCCGAAGAGCCTTTA
* ** *
26113525 GTTAGGAAGCTCACAAAGAGCCTTTA
1 ATCGGGAAGCTC-CGAAGAGCCTTTA
26113551 ATCGGGAAGCTCCGAAGAGCC
1 ATCGGGAAGCTCCGAAGAGCC
26113572 ATATATCGGG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
25 17 0.46
26 20 0.54
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.18
Consensus pattern (25 bp):
ATCGGGAAGCTCCGAAGAGCCTTTA
Found at i:26113579 original size:25 final size:24
Alignment explanation
Indices: 26113494--26113587 Score: 82
Period size: 25 Copynumber: 3.8 Consensus size: 24
26113484 AGTTCAAGCA
*
26113494 AGCC-ATATCGGGAAGCTCCGGAG
1 AGCCTATATCGGGAAGCTCCGAAG
* ** *
26113517 AGCCTTTAGTTAGGAAGCTCACAAAG
1 AGCCTATA-TCGGGAAGCTC-CGAAG
*
26113543 AGCCTTTAATCGGGAAGCTCCGAAG
1 AGCCTAT-ATCGGGAAGCTCCGAAG
*
26113568 AGCCATATATCGGGACGCTC
1 AGCC-TATATCGGGAAGCTC
26113588 ATAAGAGCTA
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
23 4 0.07
24 2 0.04
25 28 0.50
26 21 0.38
27 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.19
Consensus pattern (24 bp):
AGCCTATATCGGGAAGCTCCGAAG
Found at i:26117676 original size:27 final size:27
Alignment explanation
Indices: 26117646--26117699 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
26117636 CGGTGTTGTT
26117646 CCCAGAACAAGATCTATAGAAAATTCA
1 CCCAGAACAAGATCTATAGAAAATTCA
26117673 CCCAGAACAAGATCTATAGAAAATTCA
1 CCCAGAACAAGATCTATAGAAAATTCA
26117700 ACTTCTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.22, G:0.11, T:0.19
Consensus pattern (27 bp):
CCCAGAACAAGATCTATAGAAAATTCA
Found at i:26121387 original size:25 final size:25
Alignment explanation
Indices: 26121323--26121390 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 25
26121313 TTTAATCGGG
*
26121323 AGAGCCATTAGTCAGGAAGCTCACAA
1 AGAGCCATTA-TCGGGAAGCTCACAA
*
26121349 AGAGCCTTTAATCGGGAAGCTC-CAA
1 AGAGCCATT-ATCGGGAAGCTCACAA
26121374 AGAGCCATATATCGGGA
1 AGAGCCAT-TATCGGGA
26121391 TACTTTAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 17 0.46
26 19 0.51
27 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (25 bp):
AGAGCCATTATCGGGAAGCTCACAA
Found at i:26128980 original size:29 final size:29
Alignment explanation
Indices: 26128924--26129004 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 29
26128914 TTGGATTTGG
26128924 GTTTAGGGTAGTTGTG-TTTGGGTTAAAGCT
1 GTTTAGGGTAG-TG-GATTTGGGTTAAAGCT
*
26128954 GTTTAGGGTAGTGGATTTGGGTTAAAGTT
1 GTTTAGGGTAGTGGATTTGGGTTAAAGCT
*
26128983 GTTTCTGGGTAGTGGATTTGGG
1 GTTT-AGGGTAGTGGATTTGGG
26129005 CCGTTAGGCC
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
28 1 0.02
29 19 0.40
30 27 0.57
ACGTcount: A:0.16, C:0.02, G:0.40, T:0.42
Consensus pattern (29 bp):
GTTTAGGGTAGTGGATTTGGGTTAAAGCT
Found at i:26134855 original size:18 final size:20
Alignment explanation
Indices: 26134818--26134859 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
26134808 GTAGGACCTG
26134818 TATACTGTATAATCTGTTAC
1 TATACTGTATAATCTGTTAC
*
26134838 TATACTG-ATTAT-TGTTAC
1 TATACTGTATAATCTGTTAC
26134856 TATA
1 TATA
26134860 ATGGGCCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.48
19 4 0.19
20 7 0.33
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.48
Consensus pattern (20 bp):
TATACTGTATAATCTGTTAC
Found at i:26135530 original size:14 final size:14
Alignment explanation
Indices: 26135511--26135543 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
26135501 TTCAGTGGTA
26135511 TCTAAGAACTGATT
1 TCTAAGAACTGATT
26135525 TCTAAGAACTGATT
1 TCTAAGAACTGATT
26135539 TCTAA
1 TCTAA
26135544 ATGTCTTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (14 bp):
TCTAAGAACTGATT
Found at i:26164797 original size:6 final size:6
Alignment explanation
Indices: 26164786--26164815 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
26164776 GGTGGAAATT
26164786 AGGTGA AGGTGA AGGTGA AGGTGA AGGTGA
1 AGGTGA AGGTGA AGGTGA AGGTGA AGGTGA
26164816 GATGGAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.50, T:0.17
Consensus pattern (6 bp):
AGGTGA
Found at i:26166222 original size:9 final size:9
Alignment explanation
Indices: 26166208--26166244 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26166198 TATAGTTTGA
26166208 TATTCGAAT
1 TATTCGAAT
26166217 TATTCGAAT
1 TATTCGAAT
*
26166226 TATTCGAGT
1 TATTCGAAT
26166235 TATTCGAAT
1 TATTCGAAT
26166244 T
1 T
26166245 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26167041 original size:22 final size:22
Alignment explanation
Indices: 26167015--26167070 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
26167005 GCTATCTACA
*
26167015 AAATCAAATC-ACTAATATTAC
1 AAATCAAATCTACTAAGATTAC
* *
26167036 AGAATCATATCTTCTAAGATTAC
1 A-AATCAAATCTACTAAGATTAC
*
26167059 AAATCATATCTA
1 AAATCAAATCTA
26167071 AGATTACATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 18 0.62
23 10 0.34
ACGTcount: A:0.46, C:0.18, G:0.04, T:0.32
Consensus pattern (22 bp):
AAATCAAATCTACTAAGATTAC
Found at i:26167057 original size:23 final size:22
Alignment explanation
Indices: 26167026--26167069 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26167016 AATCAAATCA
*
26167026 CTAATATTACAGAATCATATCTT
1 CTAAGATTACA-AATCATATCTT
26167049 CTAAGATTACAAATCATATCT
1 CTAAGATTACAAATCATATCT
26167070 AAGATTACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (22 bp):
CTAAGATTACAAATCATATCTT
Found at i:26172523 original size:17 final size:17
Alignment explanation
Indices: 26172500--26172545 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
26172490 TAAATATTAA
26172500 ATTAATATAATATTTAT
1 ATTAATATAATATTTAT
* *
26172517 CTTAATA-AATA-ATAT
1 ATTAATATAATATTTAT
*
26172532 ATTAATTTAATATT
1 ATTAATATAATATT
26172546 AAATCTTATT
Statistics
Matches: 22, Mismatches: 5, Indels: 4
0.71 0.16 0.13
Matches are distributed among these distances:
15 8 0.36
16 8 0.36
17 6 0.27
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTAATATAATATTTAT
Found at i:26172527 original size:21 final size:20
Alignment explanation
Indices: 26172493--26172543 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
26172483 AATCACTTAA
*
26172493 ATATTAAATTAAT--ATAAT
1 ATATTAATTTAATAAATAAT
26172511 AT-TT-ATCTTAATAAATAAT
1 ATATTAAT-TTAATAAATAAT
26172530 ATATTAATTTAATA
1 ATATTAATTTAATA
26172544 TTAAATCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
16 1 0.04
17 7 0.26
18 2 0.07
19 7 0.26
20 8 0.30
21 2 0.07
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATTAATTTAATAAATAAT
Found at i:26180676 original size:17 final size:17
Alignment explanation
Indices: 26180644--26180677 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26180634 TACCAAATAT
**
26180644 TAAAATAAATTTAAAAA
1 TAAAATAAATCCAAAAA
26180661 TAAAATAAATCCAAAAA
1 TAAAATAAATCCAAAAA
26180678 AGTTATTAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAAATAAATCCAAAAA
Found at i:26182466 original size:4 final size:4
Alignment explanation
Indices: 26182457--26182485 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
26182447 TTTATGTACA
26182457 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
26182486 TAACGAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:26188225 original size:35 final size:35
Alignment explanation
Indices: 26188179--26188248 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
26188169 GATCTCTTAT
* *
26188179 AAGTTGCATTTCTCTTTTTAG-TTGACTTGGTTTGC
1 AAGTTGCATTTCTCTGTTGAGTTTGACTT-GTTTGC
26188214 AAGTTGCATTTCTCTGTTGAGTTTGACTTGTTTGC
1 AAGTTGCATTTCTCTGTTGAGTTTGACTTGTTTGC
26188249 CTGAATGTCG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 25 0.78
36 7 0.22
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (35 bp):
AAGTTGCATTTCTCTGTTGAGTTTGACTTGTTTGC
Found at i:26194081 original size:31 final size:31
Alignment explanation
Indices: 26194045--26194112 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
26194035 TATGACAGGT
* *
26194045 AAATATAAATGATTGCAGA-GTATGAATATGC
1 AAATATAAATGATTACA-ATGTATGAAAATGC
* *
26194076 AAATATGAATTATTACAATGTATGAAAATGC
1 AAATATAAATGATTACAATGTATGAAAATGC
*
26194107 ATATAT
1 AAATAT
26194113 GAATATTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (31 bp):
AAATATAAATGATTACAATGTATGAAAATGC
Found at i:26195547 original size:50 final size:50
Alignment explanation
Indices: 26195469--26195695 Score: 256
Period size: 50 Copynumber: 4.4 Consensus size: 50
26195459 NNNNNATATG
* ** * * * * *
26195469 GTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATGTCCTAGACATG
1 GTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATA
**
26195519 GTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATA
1 GTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATA
*
26195569 GTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATA
1 GTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATA
* ** * *
26195619 GTCTTACATGGGACCTCTGATAATCTCAATTATGCCAATGCCATGTCCCAGACATG
1 GTCTTACATGGGACCTC---TCATCT---TGGTGCCAACGCCATGTCCCAGACATA
26195675 GTCTTACATGGGACCTCTCAT
1 GTCTTACATGGGACCTCTCAT
26195696 NNNNNNNNNN
Statistics
Matches: 151, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
50 104 0.69
53 8 0.05
56 39 0.26
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
GTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATA
Found at i:26197711 original size:9 final size:9
Alignment explanation
Indices: 26197697--26197724 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
26197687 TTGATTAAGT
26197697 ACCATTTGG
1 ACCATTTGG
26197706 ACCATTTGG
1 ACCATTTGG
26197715 ACCATTTGG
1 ACCATTTGG
26197724 A
1 A
26197725 AACAGGGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (9 bp):
ACCATTTGG
Found at i:26199785 original size:21 final size:22
Alignment explanation
Indices: 26199723--26199785 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 22
26199713 TCTTGGCAAA
*
26199723 TATCCTAGTCCA-TCTAAGGAT
1 TATCCTAGTCTAGTCTAAGGAT
*
26199744 TATCCTAGTCTATTCCT--GGAT
1 TATCCTAGTCTAGT-CTAAGGAT
*
26199765 TATCTTAGTC-AGTCTAAGGAT
1 TATCCTAGTCTAGTCTAAGGAT
26199786 ATTCTATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
19 2 0.06
20 2 0.06
21 28 0.80
22 1 0.03
23 2 0.06
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (22 bp):
TATCCTAGTCTAGTCTAAGGAT
Found at i:26199851 original size:22 final size:22
Alignment explanation
Indices: 26199826--26199895 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
26199816 ATCTAAGGAT
26199826 TTGTACCTAGTCTACTTTCGAA
1 TTGTACCTAGTCTACTTTCGAA
* *** *
26199848 TTGT-CCTTA-TCCATCTAAGGAT
1 TTGTACC-TAGTCTA-CTTTCGAA
26199870 TTGTACCTAGTCTACTTTCGAA
1 TTGTACCTAGTCTACTTTCGAA
26199892 TTGT
1 TTGT
26199896 CCTTATCCAT
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 5 0.15
22 24 0.71
23 5 0.15
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (22 bp):
TTGTACCTAGTCTACTTTCGAA
Found at i:26199860 original size:44 final size:44
Alignment explanation
Indices: 26199808--26199917 Score: 211
Period size: 44 Copynumber: 2.5 Consensus size: 44
26199798 AATAAGCTAA
26199808 CCTTATCCATCTAAGGATTTGTACCTAGTCTACTTTCGAATTGT
1 CCTTATCCATCTAAGGATTTGTACCTAGTCTACTTTCGAATTGT
26199852 CCTTATCCATCTAAGGATTTGTACCTAGTCTACTTTCGAATTGT
1 CCTTATCCATCTAAGGATTTGTACCTAGTCTACTTTCGAATTGT
26199896 CCTTATCCATCTAAGGAATTTG
1 CCTTATCCATCTAAGG-ATTTG
26199918 GTGTTTTAAT
Statistics
Matches: 65, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 60 0.92
45 5 0.08
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.40
Consensus pattern (44 bp):
CCTTATCCATCTAAGGATTTGTACCTAGTCTACTTTCGAATTGT
Found at i:26199914 original size:22 final size:22
Alignment explanation
Indices: 26199845--26199915 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
26199835 GTCTACTTTC
26199845 GAATTGTCCTTATCCATCTAAG
1 GAATTGTCCTTATCCATCTAAG
* * ***
26199867 GATTTGTACC-TAGTCTA-CTTTC
1 GAATTGT-CCTTA-TCCATCTAAG
26199889 GAATTGTCCTTATCCATCTAAG
1 GAATTGTCCTTATCCATCTAAG
26199911 GAATT
1 GAATT
26199916 TGGTGTTTTA
Statistics
Matches: 35, Mismatches: 10, Indels: 8
0.66 0.19 0.15
Matches are distributed among these distances:
21 5 0.14
22 25 0.71
23 5 0.14
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.39
Consensus pattern (22 bp):
GAATTGTCCTTATCCATCTAAG
Found at i:26201812 original size:18 final size:19
Alignment explanation
Indices: 26201785--26201827 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
26201775 GTACTCTTGA
* *
26201785 ATAAACAATCAATT-TCAG
1 ATAAATAATCAATTAACAG
*
26201803 ATAAATAATCACTTAACAG
1 ATAAATAATCAATTAACAG
26201822 ATAAAT
1 ATAAAT
26201828 TAGTTAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.53, C:0.14, G:0.05, T:0.28
Consensus pattern (19 bp):
ATAAATAATCAATTAACAG
Found at i:26202792 original size:24 final size:25
Alignment explanation
Indices: 26202765--26202821 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
26202755 TCTACAATAT
26202765 AATAATA-TAAAATGGTGCTAATTC
1 AATAATATTAAAATGGTGCTAATTC
* *
26202789 AATAATATTGTCAAATGGTGTTAATTC
1 AATAATA-T-TAAAATGGTGCTAATTC
26202816 AATAAT
1 AATAAT
26202822 GTTGTCAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 7 0.25
27 21 0.75
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (25 bp):
AATAATATTAAAATGGTGCTAATTC
Found at i:26202804 original size:27 final size:27
Alignment explanation
Indices: 26202774--26202829 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
26202764 TAATAATATA
26202774 AAATGGTGCTAATTCAATAATATTGTC
1 AAATGGTGCTAATTCAATAATATTGTC
* *
26202801 AAATGGTGTTAATTCAATAATGTTGTC
1 AAATGGTGCTAATTCAATAATATTGTC
26202828 AA
1 AA
26202830 TGATTTGTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (27 bp):
AAATGGTGCTAATTCAATAATATTGTC
Found at i:26204230 original size:28 final size:28
Alignment explanation
Indices: 26204176--26204231 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
26204166 GAGAGTTGCT
**
26204176 CTCCTAAGATAAATTTTTTTAAAAAAAA
1 CTCCTAAGATAAATTTTTAAAAAAAAAA
26204204 CTCCTAAGAT-AATTTTTAAAAATAAAAA
1 CTCCTAAGATAAATTTTTAAAAA-AAAAA
26204232 ATCAATCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 10 0.40
28 15 0.60
ACGTcount: A:0.52, C:0.11, G:0.04, T:0.34
Consensus pattern (28 bp):
CTCCTAAGATAAATTTTTAAAAAAAAAA
Found at i:26204448 original size:27 final size:29
Alignment explanation
Indices: 26204418--26204474 Score: 82
Period size: 27 Copynumber: 2.0 Consensus size: 29
26204408 CAATTTATAG
* *
26204418 AATTATGCTTTGTTAAT-T-TTTAAATAT
1 AATTATGCATTATTAATATATTTAAATAT
26204445 AATTATGCATTATTAATATATTTAAATAT
1 AATTATGCATTATTAATATATTTAAATAT
26204474 A
1 A
26204475 TCAAGTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 15 0.58
28 1 0.04
29 10 0.38
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (29 bp):
AATTATGCATTATTAATATATTTAAATAT
Found at i:26208465 original size:111 final size:110
Alignment explanation
Indices: 26208297--26208513 Score: 346
Period size: 111 Copynumber: 2.0 Consensus size: 110
26208287 GGCACCAGAA
* *
26208297 TCATTTAAAAAAAATTTTTGGGTGCTGGCCAGTAGATGACCGGCACCAAGTACATTTTTCGGGTC
1 TCATTTAAAAAAAA-TTTTGGGTGCTGGCCAGTAGATGACCGACACAAAGTACATTTTTCGGGTC
* * *
26208362 CCAATGCACTTTTTTTTTACTTTGGGACACTGATGGTCGGCACAGTG
65 CCAAGGAAC-TTTTTTTTACTTTGGGACACTGATGGACGGCACAGTG
*
26208409 TCATTTAAAAAAAGA-TTTGGGTGCTGGCCAGTAGATGGCCGACACAAAGTACATTTTTCGGGTC
1 TCATTTAAAAAAA-ATTTTGGGTGCTGGCCAGTAGATGACCGACACAAAGTACATTTTTCGGGTC
26208473 CCAAGGAACTTTTTTTTACTTTGGGACACTGATGGACGGCA
65 CCAAGGAACTTTTTTTTACTTTGGGACACTGATGGACGGCA
26208514 TCAACTTTAT
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
110 31 0.32
111 53 0.54
112 13 0.13
113 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (110 bp):
TCATTTAAAAAAAATTTTGGGTGCTGGCCAGTAGATGACCGACACAAAGTACATTTTTCGGGTCC
CAAGGAACTTTTTTTTACTTTGGGACACTGATGGACGGCACAGTG
Found at i:26209212 original size:90 final size:89
Alignment explanation
Indices: 26209044--26209452 Score: 293
Period size: 90 Copynumber: 4.6 Consensus size: 89
26209034 TCAAAATAAT
* * * * *
26209044 TGTATT-ATTTCTTTAGAATGTTTGTATTTTTTTATATATGTAAATTTAATGTAGT-TGT-TTAG
1 TGTATTAATTTC-TTAGAATGTTTGTATTTTGTTGTATCTGTAAATTTAATTTAGTCCGTATTA-
** *
26209106 GGTTTAAGGTTT-AATTTTTATATTTTCG
64 TATTT-A-GTTTGAA-TTTTAAATTTTCG
*
26209134 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTCCGTATTATA
1 TGTATTAATTTCTTAGAATGTTTGTATTTTGTTGTATCTGTAAATTTAATTTAGTCCGTATTATA
*
26209199 TGTAGTTTGAA-TTTAAATTTTCG
66 TTTAGTTTGAATTTTAAATTTTCG
* * * ** * * * * *
26209222 TGTATTAA-TT-TTACCCATCTGTTTGTAGTTTGTTGGGTGTTTAAATTTATTTTAGTCTGTGTT
1 TGTATTAATTTCTTA--GA-ATGTTTGTATTTTGTTGTATCTGTAAATTTAATTTAGTCCGTATT
* *
26209285 ATATATAGTTTGAATTTAAAATTTTCG
63 ATATTTAGTTTGAATTTTAAATTTTCG
* * * * ** * * *
26209312 TGCT-CTAA-TT-TTACCCATCTGTTTGTAGTTTGTTGGGTGTTTAAATTTAATTTAGTGCGTAT
1 TG-TATTAATTTCTTA--GA-ATGTTTGTATTTTGTTGTATCTGTAAATTTAATTTAGTCCGTAT
* * * *
26209374 TAT-TTTTGTTTTAATTTTATATTTTTG
62 TATATTTAGTTTGAATTTTAAATTTTCG
*
26209401 TGTATTAATATTC-TAGAATGTTTGTATTTTATTGTATCTGTAAATTTAATTT
1 TGTATTAAT-TTCTTAGAATGTTTGTATTTTGTTGTATCTGTAAATTTAATTT
26209453 GTTGTGTACT
Statistics
Matches: 265, Mismatches: 41, Indels: 28
0.79 0.12 0.08
Matches are distributed among these distances:
86 3 0.01
87 2 0.01
88 49 0.18
89 76 0.29
90 118 0.45
91 14 0.05
92 3 0.01
ACGTcount: A:0.24, C:0.05, G:0.15, T:0.56
Consensus pattern (89 bp):
TGTATTAATTTCTTAGAATGTTTGTATTTTGTTGTATCTGTAAATTTAATTTAGTCCGTATTATA
TTTAGTTTGAATTTTAAATTTTCG
Found at i:26209276 original size:89 final size:89
Alignment explanation
Indices: 26209174--26209409 Score: 332
Period size: 90 Copynumber: 2.6 Consensus size: 89
26209164 TTTGTATCTG
*
26209174 TAAATTTAATTTAGTCCGTATTATATGTAGTTTGAATTTAAATTTTCGTGTATTAATTTTACCCA
1 TAAATTTAATTTAGTCCGTATTATATATAGTTTGAATTTAAATTTTCGTGTATTAATTTTACCCA
26209239 TCTGTTTGTAGTTTGTTGGGTGTT
66 TCTGTTTGTAGTTTGTTGGGTGTT
* * * *
26209263 TAAATTTATTTTAGTCTGTGTTATATATAGTTTGAATTTAAAATTTTCGTGCT-CTAATTTTACC
1 TAAATTTAATTTAGTCCGTATTATATATAGTTTGAATTT-AAATTTTCGTG-TATTAATTTTACC
26209327 CATCTGTTTGTAGTTTGTTGGGTGTT
64 CATCTGTTTGTAGTTTGTTGGGTGTT
* * * * * *
26209353 TAAATTTAATTTAGTGCGTATTAT-TTTTGTTTTAATTTTATATTTTTGTGTATTAAT
1 TAAATTTAATTTAGTCCGTATTATATATAGTTTGAA-TTTAAATTTTCGTGTATTAAT
26209410 ATTCTAGAAT
Statistics
Matches: 128, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
88 1 0.01
89 56 0.44
90 70 0.55
91 1 0.01
ACGTcount: A:0.24, C:0.07, G:0.15, T:0.54
Consensus pattern (89 bp):
TAAATTTAATTTAGTCCGTATTATATATAGTTTGAATTTAAATTTTCGTGTATTAATTTTACCCA
TCTGTTTGTAGTTTGTTGGGTGTT
Found at i:26212335 original size:12 final size:12
Alignment explanation
Indices: 26212318--26212343 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26212308 AATAATCAAA
26212318 TTTGGTACCGAT
1 TTTGGTACCGAT
26212330 TTTGGTACCGAT
1 TTTGGTACCGAT
26212342 TT
1 TT
26212344 GGGCGTTACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46
Consensus pattern (12 bp):
TTTGGTACCGAT
Found at i:26214023 original size:22 final size:20
Alignment explanation
Indices: 26213977--26214025 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
26213967 TTAAATGATC
26213977 TTTTTTTCCATTTAAATTTA
1 TTTTTTTCCATTTAAATTTA
* *
26213997 ATTTTTTCTCATTTCAATCTT-
1 TTTTTTTC-CATTTAAAT-TTA
26214018 TTTTTTTC
1 TTTTTTTC
26214026 ATATTAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 7 0.29
21 15 0.62
22 2 0.08
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTTTCCATTTAAATTTA
Found at i:26214132 original size:28 final size:28
Alignment explanation
Indices: 26214099--26214187 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 28
26214089 ATAACTTATT
*
26214099 TTCATTTAAACTTTCATTCCATTTCATA
1 TTCATTTAAACTTTCATTTCATTTCATA
* *
26214127 ATCA-TTACAA-ATTCATTTCATTTCATA
1 TTCATTTA-AACTTTCATTTCATTTCATA
26214154 TTCATTT-AACATTTCATTTCATTTCATA
1 TTCATTTAAAC-TTTCATTTCATTTCATA
26214182 TTCATT
1 TTCATT
26214188 ACAAATTACA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
26 2 0.04
27 21 0.40
28 29 0.56
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.51
Consensus pattern (28 bp):
TTCATTTAAACTTTCATTTCATTTCATA
Found at i:26214148 original size:5 final size:5
Alignment explanation
Indices: 26214110--26214187 Score: 66
Period size: 5 Copynumber: 14.4 Consensus size: 5
26214100 TCATTTAAAC
* * * *
26214110 TTTCA TTCCA TTTCA TAATCA TTACAA ATTCA TTTCA TTTCA TATTCA
1 TTTCA TTTCA TTTCA T-TTCA TTTC-A TTTCA TTTCA TTTCA T-TTCA
26214158 TTTAACA TTTCA TTTCA TTTCA TATTCA TT
1 TTT--CA TTTCA TTTCA TTTCA T-TTCA TT
26214188 ACAAATTACA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 37 0.63
6 17 0.29
7 5 0.08
ACGTcount: A:0.29, C:0.19, G:0.00, T:0.51
Consensus pattern (5 bp):
TTTCA
Found at i:26214187 original size:16 final size:15
Alignment explanation
Indices: 26214110--26214187 Score: 66
Period size: 16 Copynumber: 4.8 Consensus size: 15
26214100 TCATTTAAAC
*
26214110 TTTCATTCCATTTCA
1 TTTCATTTCATTTCA
* * *
26214125 TAATCATTACAAATTCA
1 T-TTCATTTC-ATTTCA
26214142 TTTCATTTCATATTCA
1 TTTCATTTCAT-TTCA
26214158 TTTAACATTTCATTTCA
1 TTT--CATTTCATTTCA
26214175 TTTCATATTCATT
1 TTTCAT-TTCATT
26214188 ACAAATTACA
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
15 5 0.10
16 25 0.49
17 13 0.25
18 8 0.16
ACGTcount: A:0.29, C:0.19, G:0.00, T:0.51
Consensus pattern (15 bp):
TTTCATTTCATTTCA
Found at i:26214300 original size:20 final size:20
Alignment explanation
Indices: 26214275--26214330 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 20
26214265 GTAGTCTCAT
26214275 TTCAATTTATTTTTTTTCAA
1 TTCAATTTATTTTTTTTCAA
26214295 TTCAA--T-TTTTTTTTCAA
1 TTCAATTTATTTTTTTTCAA
*
26214312 TTC-ATTTCATATTTTTTCA
1 TTCAATTT-ATTTTTTTTCA
26214331 TATTAATTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
16 1 0.03
17 14 0.45
18 2 0.06
20 14 0.45
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.64
Consensus pattern (20 bp):
TTCAATTTATTTTTTTTCAA
Found at i:26214395 original size:22 final size:21
Alignment explanation
Indices: 26214357--26214403 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
26214347 TCTCAATTAC
26214357 ATTTTTTTTAAAGTTTT-TCA
1 ATTTTTTTTAAAGTTTTCTCA
**
26214377 TATTTTATTTTAATTTTTTCTCA
1 -ATTTT-TTTTAAAGTTTTCTCA
26214400 ATTT
1 ATTT
26214404 AAATATCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 5 0.23
22 14 0.64
23 3 0.14
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.68
Consensus pattern (21 bp):
ATTTTTTTTAAAGTTTTCTCA
Found at i:26214437 original size:25 final size:25
Alignment explanation
Indices: 26214401--26214453 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
26214391 TTTTTCTCAA
* *
26214401 TTTAAATATCATTCCATTTCAAAAT
1 TTTAAATATCATTCAAATTCAAAAT
* *
26214426 TTTAAATTTCATTTAAATTCAAAAT
1 TTTAAATATCATTCAAATTCAAAAT
26214451 TTT
1 TTT
26214454 TCTCATTTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (25 bp):
TTTAAATATCATTCAAATTCAAAAT
Found at i:26214712 original size:20 final size:20
Alignment explanation
Indices: 26214640--26214718 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 20
26214630 ATTTCCATTT
26214640 CATTTAAATTATCTTTTTTTTTC
1 CATTTAAATTATC---TTTTTTC
26214663 CATTTAAATTTAAT-TTTTTCTC
1 CATTTAAA-TT-ATCTTTTT-TC
26214685 ATTTCATTTAAATTATCTTTTTTC
1 ----CATTTAAATTATCTTTTTTC
*
26214709 CATTTTAATT
1 CATTTAAATT
26214719 TACGTCTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 19
0.70 0.01 0.28
Matches are distributed among these distances:
20 9 0.19
21 5 0.11
22 2 0.04
23 8 0.17
24 6 0.13
25 9 0.19
26 8 0.17
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (20 bp):
CATTTAAATTATCTTTTTTC
Found at i:26214720 original size:26 final size:25
Alignment explanation
Indices: 26214631--26214713 Score: 102
Period size: 26 Copynumber: 3.4 Consensus size: 25
26214621 TTTCATTTCA
26214631 TTTCCATTTCATTTAAATTATCTTT
1 TTTCCATTTCATTTAAATTATCTTT
*
26214656 TTT---TTTCCATTTAAATT-TAATTT
1 TTTCCATTT-CATTTAAATTAT-CTTT
26214679 TTTCTCATTTCATTTAAATTATCTTT
1 TTTC-CATTTCATTTAAATTATCTTT
26214705 TTTCCATTT
1 TTTCCATTT
26214714 TAATTTACGT
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
22 4 0.08
23 16 0.33
25 8 0.16
26 17 0.35
27 4 0.08
ACGTcount: A:0.23, C:0.14, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTCCATTTCATTTAAATTATCTTT
Found at i:26214729 original size:49 final size:46
Alignment explanation
Indices: 26214631--26214720 Score: 137
Period size: 46 Copynumber: 1.9 Consensus size: 46
26214621 TTTCATTTCA
26214631 TTTCCATTTCATTTAAATTATCTTTTTTTTTCCATTTAAATTTAATTT
1 TTTCCATTTCATTTAAATTATC--TTTTTTTCCATTTAAATTTAATTT
*
26214679 TTTCTCATTTCATTTAAATTATC-TTTTTTCCATTTTAATTTA
1 TTTC-CATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTA
26214721 CGTCTTTTTC
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
46 18 0.45
48 4 0.10
49 18 0.45
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.62
Consensus pattern (46 bp):
TTTCCATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTAATTT
Found at i:26214944 original size:36 final size:37
Alignment explanation
Indices: 26214895--26214977 Score: 105
Period size: 36 Copynumber: 2.3 Consensus size: 37
26214885 CTTCAGCTTG
* * * *
26214895 GTGCCAACTAATGTAAGGCCATCTGTGGCAGG-CTTA
1 GTGCCAGCCAATGTAAGACCATCTCTGGCAGGCCTTA
* *
26214931 GTGCCGGCCAATGTAAGACCATCTCTGGCAGGCCTTG
1 GTGCCAGCCAATGTAAGACCATCTCTGGCAGGCCTTA
26214968 GTGCCAGCCA
1 GTGCCAGCCA
26214978 CTAAAAGACC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
36 27 0.69
37 12 0.31
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (37 bp):
GTGCCAGCCAATGTAAGACCATCTCTGGCAGGCCTTA
Found at i:26214986 original size:37 final size:36
Alignment explanation
Indices: 26214913--26214987 Score: 87
Period size: 37 Copynumber: 2.1 Consensus size: 36
26214903 TAATGTAAGG
* * **
26214913 CCATCTGTGGCAGGCTTAGTGCCGGCCAATGTAAGA
1 CCATCTCTGGCAGGCTTAGTGCCAGCCAATAAAAGA
* *
26214949 CCATCTCTGGCAGGCCTTGGTGCCAGCCACTAAAAGA
1 CCATCTCTGGCAGG-CTTAGTGCCAGCCAATAAAAGA
26214986 CC
1 CC
26214988 TTTTTGGCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
36 13 0.41
37 19 0.59
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (36 bp):
CCATCTCTGGCAGGCTTAGTGCCAGCCAATAAAAGA
Found at i:26215182 original size:44 final size:44
Alignment explanation
Indices: 26215132--26215368 Score: 377
Period size: 44 Copynumber: 5.4 Consensus size: 44
26215122 TTAATATATA
*
26215132 TAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATAATT
1 TAATGTGTTTTAAATTAAATATGTATGTATATTGTATTATAATT
* * *
26215176 TAATGTGTTTTAAAATAAACATGTATGTCTATTGTATTATAATT
1 TAATGTGTTTTAAATTAAATATGTATGTATATTGTATTATAATT
*
26215220 TAATGTGCTTT-AATTCAAATATGTATGTATATTGTATTATAATT
1 TAATGTGTTTTAAATT-AAATATGTATGTATATTGTATTATAATT
* *
26215264 TATTGTGTTTTAAATTAAATATGCATGTATATTGTATTATAATT
1 TAATGTGTTTTAAATTAAATATGTATGTATATTGTATTATAATT
*
26215308 TAATGTGTTTTAAATTAAATATGCATGTATATTGTATTATAATT
1 TAATGTGTTTTAAATTAAATATGTATGTATATTGTATTATAATT
*
26215352 TAACGTGTTTTAAATTA
1 TAATGTGTTTTAAATTA
26215369 GGAATAAGAA
Statistics
Matches: 180, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
43 3 0.02
44 173 0.96
45 4 0.02
ACGTcount: A:0.36, C:0.03, G:0.11, T:0.50
Consensus pattern (44 bp):
TAATGTGTTTTAAATTAAATATGTATGTATATTGTATTATAATT
Found at i:26218420 original size:111 final size:111
Alignment explanation
Indices: 26218220--26218423 Score: 284
Period size: 111 Copynumber: 1.8 Consensus size: 111
26218210 AAAAAAGGTA
* * * *
26218220 GTGCCGGCCATTAATGTCCCAAAGTAAAAAAAAAGTGCCTGGGGACCTGAAAAATGTACTTAGTG
1 GTGCAGGCCATCAATGTCCCAAAGTAAAAAAAAAGTGCATGGGGACCCGAAAAATGTACTTAGTG
*
26218285 CCGGCCATCTACTAGCCAGTACCCAAAATTTTTTTAAATGACACTG
66 CCGGCCATCTACTAGCCAGCACCCAAAATTTTTTTAAATGACACTG
* * *
26218331 GTGCAGGCCATCAGTGTCCCAAAGTAAAATAAAAA-TGCATTGGGACCCGAAAAATGTACTTGGT
1 GTGCAGGCCATCAATGTCCCAAAGTAAAA-AAAAAGTGCATGGGGACCCGAAAAATGTACTTAGT
* * * *
26218395 GCCGGCCATTTATTGGCCTGCACCCAAAA
65 GCCGGCCATCTACTAGCCAGCACCCAAAA
26218424 AAAAATTTAA
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
111 75 0.94
112 5 0.06
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (111 bp):
GTGCAGGCCATCAATGTCCCAAAGTAAAAAAAAAGTGCATGGGGACCCGAAAAATGTACTTAGTG
CCGGCCATCTACTAGCCAGCACCCAAAATTTTTTTAAATGACACTG
Found at i:26222757 original size:31 final size:30
Alignment explanation
Indices: 26222699--26222757 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
26222689 GTAGAATTTA
* *
26222699 GTTTTTAGTTTAGTTTTCTTTTTTTCTTAG
1 GTTTTTAGTTTAGTTTTCATTTGTTCTTAG
26222729 GTTTTTAGAATTTA-TTTTCATTTGTTCTT
1 GTTTTTAG--TTTAGTTTTCATTTGTTCTT
26222758 TGCTTTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 13 0.52
32 4 0.16
ACGTcount: A:0.14, C:0.07, G:0.12, T:0.68
Consensus pattern (30 bp):
GTTTTTAGTTTAGTTTTCATTTGTTCTTAG
Found at i:26248008 original size:24 final size:24
Alignment explanation
Indices: 26247976--26248027 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
26247966 TTTTTAAAAG
* *
26247976 ATTTTGTATTTATTAGTATAATAT
1 ATTTAGTATTTATTAGCATAATAT
*
26248000 ATTTAGTATTTATTAGCATAATTT
1 ATTTAGTATTTATTAGCATAATAT
26248024 ATTT
1 ATTT
26248028 GACCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (24 bp):
ATTTAGTATTTATTAGCATAATAT
Found at i:26251888 original size:20 final size:20
Alignment explanation
Indices: 26251863--26251930 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 20
26251853 AAATAAACAC
26251863 ATAATTATTCATTTAATATT
1 ATAATTATTCATTTAATATT
*
26251883 ATAATTATTC-TATAATTATT
1 ATAATTATTCATTTAA-TATT
26251903 A-AATAATATT-ATTTAAATAGTT
1 ATAAT--TATTCATTT-AATA-TT
26251925 ATAATT
1 ATAATT
26251931 CTTTTTCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
19 7 0.18
20 15 0.38
21 9 0.23
22 5 0.13
23 3 0.08
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (20 bp):
ATAATTATTCATTTAATATT
Found at i:26254628 original size:54 final size:56
Alignment explanation
Indices: 26254510--26254630 Score: 133
Period size: 54 Copynumber: 2.2 Consensus size: 56
26254500 CTTTTTTATA
* * * * * *
26254510 GTCTACTGATTTACGATCACGACCTTTTACTTATGAGATTTTATGAATCTTACGGT
1 GTCTGCTGATTTACAATCACAACCCTTTACTTACGAGATTTTATAAATCTTACGGT
* * *
26254566 -TC-GTTGATTTACAATCACAACCCTTTACTTACGTGATTTTATAAATC-T-CGTT
1 GTCTGCTGATTTACAATCACAACCCTTTACTTACGAGATTTTATAAATCTTACGGT
26254618 GTCTGCTGATTTA
1 GTCTGCTGATTTA
26254631 TGGTCACAAC
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
52 3 0.06
53 3 0.06
54 45 0.85
55 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (56 bp):
GTCTGCTGATTTACAATCACAACCCTTTACTTACGAGATTTTATAAATCTTACGGT
Found at i:26254775 original size:54 final size:54
Alignment explanation
Indices: 26254665--26254784 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 54
26254655 CGATTTCTTA
* * * ** *
26254665 ATTTACGATCACAACCTTTTACTTATGGGATTTTACAAATCTCACGGTCCATTG
1 ATTTACGATCACAACCTTTTACATACGAGATTTTACAAATCTCACAATCCACTG
** ** *
26254719 ATTTACGATCATGACCTTTTACATACGAGATTTTACAAATCTTGCAATCCGCTG
1 ATTTACGATCACAACCTTTTACATACGAGATTTTACAAATCTCACAATCCACTG
26254773 ATTTACGATCAC
1 ATTTACGATCAC
26254785 GACTACTTTT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (54 bp):
ATTTACGATCACAACCTTTTACATACGAGATTTTACAAATCTCACAATCCACTG
Found at i:26254838 original size:42 final size:42
Alignment explanation
Indices: 26254770--26255040 Score: 290
Period size: 42 Copynumber: 6.5 Consensus size: 42
26254760 TTGCAATCCG
* * * *
26254770 CTGATTTACGATCACGACTACTTTTGACTTTCTTATGGTCTA
1 CTGATTTACGATCACGACCACCTTCGACTTTCTTATGGTCCA
* * * * *
26254812 CTGGTTTATGATCACGACGACCTTTGACTTTCTTATTGTCCA
1 CTGATTTACGATCACGACCACCTTCGACTTTCTTATGGTCCA
* *
26254854 CTGATTTACGATCACGACCACCTTCGGCTTTCTTATGGCCCA
1 CTGATTTACGATCACGACCACCTTCGACTTTCTTATGGTCCA
* * * * * *
26254896 TTAATTTATGATCACGACCACCTTTGACTTTCTTATAGTCTA
1 CTGATTTACGATCACGACCACCTTCGACTTTCTTATGGTCCA
* *
26254938 CTGATTTACGATCACGACCACCTTCGGCTTTCTTATGGCCCA
1 CTGATTTACGATCACGACCACCTTCGACTTTCTTATGGTCCA
* * ** * * **
26254980 TTAATTTACGATCATTACTACCTTCGACTTTTTTATGGTCTG
1 CTGATTTACGATCACGACCACCTTCGACTTTCTTATGGTCCA
*
26255022 CTGATTTATGATCACGACC
1 CTGATTTACGATCACGACC
26255041 TTCGGCTTTC
Statistics
Matches: 184, Mismatches: 45, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 184 1.00
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (42 bp):
CTGATTTACGATCACGACCACCTTCGACTTTCTTATGGTCCA
Found at i:26254911 original size:84 final size:84
Alignment explanation
Indices: 26254770--26255053 Score: 358
Period size: 84 Copynumber: 3.4 Consensus size: 84
26254760 TTGCAATCCG
* * * * * * * ** *
26254770 CTGATTTACGATCACGACTACTTTTGACTTTCTTATGGTCTACTGGTTTATGATCACGACGACCT
1 CTGATTTACGATCACGACCACCTTCGGCTTTCTTATGGCCCATTAATTTATGATCACGACCACCT
* *
26254835 TTGACTTTCTTATTGTCCA
66 TTGACTTTCTTATAGTCTA
26254854 CTGATTTACGATCACGACCACCTTCGGCTTTCTTATGGCCCATTAATTTATGATCACGACCACCT
1 CTGATTTACGATCACGACCACCTTCGGCTTTCTTATGGCCCATTAATTTATGATCACGACCACCT
26254919 TTGACTTTCTTATAGTCTA
66 TTGACTTTCTTATAGTCTA
* ** *
26254938 CTGATTTACGATCACGACCACCTTCGGCTTTCTTATGGCCCATTAATTTACGATCATTACTACCT
1 CTGATTTACGATCACGACCACCTTCGGCTTTCTTATGGCCCATTAATTTATGATCACGACCACCT
* * * *
26255003 TCGACTTTTTTATGGTCTG
66 TTGACTTTCTTATAGTCTA
*
26255022 CTGATTTATGATCACG---ACCTTCGGCTTTCTTA
1 CTGATTTACGATCACGACCACCTTCGGCTTTCTTA
26255054 CAGTTTGCTG
Statistics
Matches: 179, Mismatches: 21, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
81 16 0.09
84 163 0.91
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (84 bp):
CTGATTTACGATCACGACCACCTTCGGCTTTCTTATGGCCCATTAATTTATGATCACGACCACCT
TTGACTTTCTTATAGTCTA
Found at i:26255003 original size:126 final size:126
Alignment explanation
Indices: 26254773--26255040 Score: 329
Period size: 126 Copynumber: 2.1 Consensus size: 126
26254763 CAATCCGCTG
* * * * * * * *
26254773 ATTTACGATCACGACTACTTTTGACTTTCTTATGGTCTACTGGTTTATGATCACGACGACCTTTG
1 ATTTATGATCACGACCACCTTTGACTTTCTTATAGTCTACTGATTTACGATCACGACCACCTTCG
* * * * *
26254838 ACTTTCTTATTGTCCACTGATTTACGATCACGACCACCTTCGGCTTTCTTATGGCCCATTA
66 ACTTTCTTATGGCCCACTAATTTACGATCACGACCACCTTCGACTTTCTTATGGCCCACTA
26254899 ATTTATGATCACGACCACCTTTGACTTTCTTATAGTCTACTGATTTACGATCACGACCACCTTCG
1 ATTTATGATCACGACCACCTTTGACTTTCTTATAGTCTACTGATTTACGATCACGACCACCTTCG
* * ** * * * ** *
26254964 GCTTTCTTATGGCCCATTAATTTACGATCATTACTACCTTCGACTTTTTTATGGTCTGCTG
66 ACTTTCTTATGGCCCACTAATTTACGATCACGACCACCTTCGACTTTCTTATGGCCCACTA
26255025 ATTTATGATCACGACC
1 ATTTATGATCACGACC
26255041 TTCGGCTTTC
Statistics
Matches: 119, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
126 119 1.00
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (126 bp):
ATTTATGATCACGACCACCTTTGACTTTCTTATAGTCTACTGATTTACGATCACGACCACCTTCG
ACTTTCTTATGGCCCACTAATTTACGATCACGACCACCTTCGACTTTCTTATGGCCCACTA
Found at i:26255372 original size:54 final size:54
Alignment explanation
Indices: 26255306--26255484 Score: 259
Period size: 54 Copynumber: 3.3 Consensus size: 54
26255296 TATGATCTGT
* * *
26255306 TGATTTAGGATCACGACCTTTTACTTACGGGATTTTACGAATATCGCGGTCCGC
1 TGATTTACGATCACGACCTTTTACTTACGGGATTTTACAAATCTCGCGGTCCGC
* * * **
26255360 TAATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCGTGGTCCAT
1 TGATTTACGATCACGACCTTTTACTTACGGGATTTTACAAATCTCGCGGTCCGC
**
26255414 TGATTTACGATCACGACCTTTTACAGACGGGATTTTACAAATCTCGCGGTCCGC
1 TGATTTACGATCACGACCTTTTACTTACGGGATTTTACAAATCTCGCGGTCCGC
*
26255468 TGCTTTACGATCACGAC
1 TGATTTACGATCACGAC
26255485 TACTTTCAGC
Statistics
Matches: 109, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 109 1.00
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (54 bp):
TGATTTACGATCACGACCTTTTACTTACGGGATTTTACAAATCTCGCGGTCCGC
Found at i:26255418 original size:147 final size:148
Alignment explanation
Indices: 26255142--26255427 Score: 367
Period size: 147 Copynumber: 1.9 Consensus size: 148
26255132 CTACTTTTCA
* * * * * * *
26255142 CTTTCTTATGGTCCGCTGATTTATGATCACAACTTTTTTACTTATGGGATTTTATGGATCTCACG
1 CTTTCTTATGATCCGCTGATTTAGGATCACAACTCTTTTACTTACGGGATTTTACGAATATCACG
* * *
26255207 GTCCATTAATTTACAATCACGACATTTTACTTACGGGATTTTACGAATCTCGTAATCCGCTGATT
66 GTCCACTAATTTACAATCACGACATTTTACTTACGGGATTTTACAAATCTCGTAATCCACTGATT
*
26255272 TACGGTCACAACCATTGG
131 TACGATCACAACCATTGG
* * * *
26255290 CTTTCTTATGATCTGTTGATTTAGGATCACGAC-CTTTTACTTACGGGATTTTACGAATATCGCG
1 CTTTCTTATGATCCGCTGATTTAGGATCACAACTCTTTTACTTACGGGATTTTACGAATATCACG
* * * * ** *
26255354 GTCCGCTAATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCGTGGTCCATTGATT
66 GTCCACTAATTTACAATCACGACATTTTACTTACGGGATTTTACAAATCTCGTAATCCACTGATT
26255419 TACGATCAC
131 TACGATCAC
26255428 GACCTTTTAC
Statistics
Matches: 116, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
147 88 0.76
148 28 0.24
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (148 bp):
CTTTCTTATGATCCGCTGATTTAGGATCACAACTCTTTTACTTACGGGATTTTACGAATATCACG
GTCCACTAATTTACAATCACGACATTTTACTTACGGGATTTTACAAATCTCGTAATCCACTGATT
TACGATCACAACCATTGG
Found at i:26255570 original size:42 final size:42
Alignment explanation
Indices: 26255471--26255733 Score: 182
Period size: 42 Copynumber: 6.4 Consensus size: 42
26255461 GGTCCGCTGC
* * ** **
26255471 TTTACGATCACGACTACTTTC-AGCTTTCTTATGGTCCATTGG
1 TTTACGATCATGACCACTTTCGA-CTTTCTTATGGTCTGTTAA
* * *
26255513 TTTATGATCATGACCACTTTCGACTTTTTTATGGTCTGTTGA
1 TTTACGATCATGACCACTTTCGACTTTCTTATGGTCTGTTAA
* * **
26255555 TTTACGACCACGACCACCTTT-GACTTT-TGTATAATCTGTTAA
1 TTTACGATCATGACCA-CTTTCGACTTTCT-TATGGTCTGTTAA
* * * *
26255597 TTTACGATCATGGCCA-TCTTCGGCTTTCTTATGGTTTGTCAA
1 TTTACGATCATGACCACT-TTCGACTTTCTTATGGTCTGTTAA
* * * *
26255639 TTTACGATCATGACCACCTTCGGCTTTCTTATGGTTTGCTAA
1 TTTACGATCATGACCACTTTCGACTTTCTTATGGTCTGTTAA
* * * * ** *
26255681 TTTATGATC---ACGACTTTCGGCTTTCTTA-CGTCTACTGA
1 TTTACGATCATGACCACTTTCGACTTTCTTATGGTCTGTTAA
26255719 TTTACGATCATGACC
1 TTTACGATCATGACC
26255734 TTTTACATAC
Statistics
Matches: 177, Mismatches: 34, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
38 14 0.08
39 17 0.10
40 1 0.01
41 5 0.03
42 134 0.76
43 6 0.03
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.41
Consensus pattern (42 bp):
TTTACGATCATGACCACTTTCGACTTTCTTATGGTCTGTTAA
Found at i:26255875 original size:54 final size:54
Alignment explanation
Indices: 26255811--26255940 Score: 179
Period size: 54 Copynumber: 2.4 Consensus size: 54
26255801 TTATGGCCCA
* * * *
26255811 TTGATTTACGATCATGACCTTTTACTTACGAGATTTTATGGATCTCACGGTTCG
1 TTGATTTACGATCACGACCTTTTACTTACGAGATTTTACGAATCTCACAGTTCG
* * *
26255865 TTGATTTACGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCAGTTTG
1 TTGATTTACGATCACGACCTTTTACTTACGAGATTTTACGAATCTCACAGTTCG
* *
26255919 TTGATTTACGGTCACAACCTTT
1 TTGATTTACGATCACGACCTTT
26255941 GGCTTTCTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (54 bp):
TTGATTTACGATCACGACCTTTTACTTACGAGATTTTACGAATCTCACAGTTCG
Found at i:26256073 original size:147 final size:147
Alignment explanation
Indices: 26255716--26256083 Score: 332
Period size: 147 Copynumber: 2.5 Consensus size: 147
26255706 TTACGTCTAC
* * ** * *** *
26255716 TGATTTACGATCATGACCTTTTACATAC-ATGATTTTACAAATCTTGCGGTCCACTAATTTACAA
1 TGATTTACGATCACGACCTTTTACATACGA-GATTTTACGAATCTCACAGTCTGTTAATTTACGA
* *** * *
26255780 TCAAAACTACTTTTGGCTTTCTTA-TGGCCCATTGATTTACGATCATGACCTTTTACTTACGAGA
65 TCACAAC--C-TTTGGCTTTCTTACT-ATTCACTGATTTACGATCACGACCTTTTACTTACGAGA
** *
26255844 TTTTATGGATCTCACGGTTCGT
126 TTTTATAAATCTCACAGTTCGT
* * * * * *
26255866 TGATTTACGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCAGTTTGTTGATTTACGGT
1 TGATTTACGATCACGACCTTTTACATACGAGATTTTACGAATCTCACAGTCTGTTAATTTACGAT
**
26255931 CACAACCTTTGGCTTTCTTACTATTCACTGATTTATTATCACGACCTTTTACTTAC-AGGATTTT
66 CACAACCTTTGGCTTTCTTACTATTCACTGATTTACGATCACGACCTTTTACTTACGA-GATTTT
*
26255995 ATAAATCTCGCAG-TCTGT
130 ATAAATCTCACAGTTC-GT
* * * * **
26256013 TGATTTACGATCATGGCCTTTTACATATGAGATTTTATGAATCTCATGGTCCT-TTAATTTACGA
1 TGATTTACGATCACGACCTTTTACATACGAGATTTTACGAATCTCACAGT-CTGTTAATTTACGA
26256077 TCACAAC
65 TCACAAC
26256084 TAATTTCGGC
Statistics
Matches: 176, Mismatches: 37, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
146 3 0.02
147 114 0.65
148 3 0.02
150 56 0.32
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.40
Consensus pattern (147 bp):
TGATTTACGATCACGACCTTTTACATACGAGATTTTACGAATCTCACAGTCTGTTAATTTACGAT
CACAACCTTTGGCTTTCTTACTATTCACTGATTTACGATCACGACCTTTTACTTACGAGATTTTA
TAAATCTCACAGTTCGT
Found at i:26256169 original size:41 final size:42
Alignment explanation
Indices: 26256058--26256204 Score: 136
Period size: 42 Copynumber: 3.5 Consensus size: 42
26256048 TATGAATCTC
** * **
26256058 ATGGTCCTTTAATTTACGATCACAACTAATTTCGGCTTTCTT
1 ATGGTCCGCTAATTTACGATCACAACCACCTTCGGCTTTCTT
* *
26256100 ATGGTCCGCTAATTTATGATCA-AGACCACCTTCGG-TTTTTT
1 ATGGTCCGCTAATTTACGATCACA-ACCACCTTCGGCTTTCTT
** * * * *
26256141 ATGGTTTGCTAATTTACGACCACAACCACATTTGACTTTCTT
1 ATGGTCCGCTAATTTACGATCACAACCACCTTCGGCTTTCTT
* *
26256183 ATGGTCCACTAATTTACAATCA
1 ATGGTCCGCTAATTTACGATCA
26256205 TGACCTTCTG
Statistics
Matches: 82, Mismatches: 20, Indels: 6
0.76 0.19 0.06
Matches are distributed among these distances:
41 32 0.39
42 50 0.61
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (42 bp):
ATGGTCCGCTAATTTACGATCACAACCACCTTCGGCTTTCTT
Found at i:26256285 original size:54 final size:54
Alignment explanation
Indices: 26256227--26256351 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 54
26256217 TTCTTACCAT
* *
26256227 CCGTTGATTTATGGTCACAACCTTTTACAAATGGGATTTTACAAATCTCGTGGC
1 CCGTTGATTTATGATCACAACCTTTTACAAATGGGATTTTACAAATCTCATGGC
* * ** * * * *
26256281 CCGTTGATTTACGATCACGATTTTTTACATATGGGATTTTACGAATTTCATGGT
1 CCGTTGATTTATGATCACAACCTTTTACAAATGGGATTTTACAAATCTCATGGC
*
26256335 CCGCTGATTTATGATCA
1 CCGTTGATTTATGATCA
26256352 TGACTACTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (54 bp):
CCGTTGATTTATGATCACAACCTTTTACAAATGGGATTTTACAAATCTCATGGC
Found at i:26256516 original size:78 final size:78
Alignment explanation
Indices: 26256384--26256545 Score: 200
Period size: 78 Copynumber: 2.1 Consensus size: 78
26256374 GGTCTGTTGA
* * *
26256384 TTTACGATTACGACCTTTTACTTACGGGATTTTACAAATCTCACGATCCACTGATTTAC-AGTCA
1 TTTACGATTAAGACCTTTTACTTACAGAATTTTACAAATCTCACGATCCACTGATTTACGA-TCA
*
26256448 CGACCTTTGACTTT
65 CGACATTTGACTTT
* * * * **
26256462 TTTACGATTAAGACCTTTTACTTATAGAATTTTACGAATCTCATGGTCTGCTGATTTACGATCAC
1 TTTACGATTAAGACCTTTTACTTACAGAATTTTACAAATCTCACGATCCACTGATTTACGATCAC
*
26256527 GACATTTGGCTTT
66 GACATTTGACTTT
*
26256540 CTTACG
1 TTTACG
26256546 GTCCGCTGAT
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 70 0.99
79 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (78 bp):
TTTACGATTAAGACCTTTTACTTACAGAATTTTACAAATCTCACGATCCACTGATTTACGATCAC
GACATTTGACTTT
Found at i:26256605 original size:54 final size:54
Alignment explanation
Indices: 26256544--26256841 Score: 348
Period size: 54 Copynumber: 5.5 Consensus size: 54
26256534 GGCTTTCTTA
* * ** * *
26256544 CGGTCCGCTGATTTACGATCACGATGTTTTACTTACGGGATTTTACAAATCTCG
1 CGGTCTGCTGATTTATGATCACGACCTTTTACTTATGGGATTTTACGAATCTCG
* * * * * * * *
26256598 CAGTCCGCTAATTTAAGATTACAACCTTTTACTTATGGGATTTAATGAATCTCG
1 CGGTCTGCTGATTTATGATCACGACCTTTTACTTATGGGATTTTACGAATCTCG
* * * * *
26256652 CGGTCTTCTGATTTATGATCACAACCTTTTACTTACGAGATTTTATGAATCTCG
1 CGGTCTGCTGATTTATGATCACGACCTTTTACTTATGGGATTTTACGAATCTCG
* * *
26256706 CGGTCTGTTGATTTATGATCATGACCTTTTACTTATTGGATTTTACGAATCTCG
1 CGGTCTGCTGATTTATGATCACGACCTTTTACTTATGGGATTTTACGAATCTCG
26256760 C-GT-TAGCTGATTTATGATCACGACCTTTTACTTATGGGATTTTACGAATCTCG
1 CGGTCT-GCTGATTTATGATCACGACCTTTTACTTATGGGATTTTACGAATCTCG
* * *
26256813 TGGTCTGCTGATTTACGATCACAACCTTT
1 CGGTCTGCTGATTTATGATCACGACCTTT
26256842 AGCTTTATTA
Statistics
Matches: 207, Mismatches: 34, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
52 1 0.00
53 47 0.23
54 158 0.76
55 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (54 bp):
CGGTCTGCTGATTTATGATCACGACCTTTTACTTATGGGATTTTACGAATCTCG
Found at i:26256682 original size:108 final size:107
Alignment explanation
Indices: 26256550--26256926 Score: 372
Period size: 108 Copynumber: 3.6 Consensus size: 107
26256540 CTTACGGTCC
* ** * * * *
26256550 GCTGATTTACGATCACGATGTTTTACTTACGGGATTTTACAAATCTCGCAGTCCGCTAATTTAAG
1 GCTGATTTATGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCGGTCTGCTGATTTAAG
* *
26256615 ATTACAACCTTTTACTTATGGGATTTAATGAATCTCGCGGTCT-
66 ATCACAACCTTTTACTTATGGGATTTAACGAATCTCGC-GT-TA
* * * * * *
26256658 TCTGATTTATGATCACAACCTTTTACTTACGAGATTTTATGAATCTCGCGGTCTGTTGATTTATG
1 GCTGATTTATGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCGGTCTGCTGATTTAAG
** * *
26256723 ATCATGACCTTTTACTTATTGGATTTTACGAATCTCGCGTTA
66 ATCACAACCTTTTACTTATGGGATTTAACGAATCTCGCGTTA
* * *
26256765 GCTGATTTATGATCACGACCTTTTACTTATGGGATTTTACGAATCTCGTGGTCTGCTGATTTACG
1 GCTGATTTATGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCGGTCTGCTGATTTAAG
*
26256830 ATCACAACC-TTTAGCTT-T---A-TT-ACG---GTC-CG-T-
66 ATCACAACCTTTTA-CTTATGGGATTTAACGAATCTCGCGTTA
* * * *
26256860 --TGATTTACGATCACGACCTTTTACTTACGGGATTTTACGAATCTTGCGGTCTACTGATTTACG
1 GCTGATTTATGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCGGTCTGCTGATTTAAG
26256923 ATCA
66 ATCA
26256927 TGACCTTTGG
Statistics
Matches: 232, Mismatches: 35, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
93 62 0.27
96 1 0.00
97 2 0.01
98 2 0.01
101 3 0.01
102 2 0.01
103 1 0.00
106 6 0.03
107 69 0.30
108 84 0.36
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (107 bp):
GCTGATTTATGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCGGTCTGCTGATTTAAG
ATCACAACCTTTTACTTATGGGATTTAACGAATCTCGCGTTA
Found at i:26256880 original size:93 final size:93
Alignment explanation
Indices: 26256767--26257066 Score: 422
Period size: 93 Copynumber: 3.2 Consensus size: 93
26256757 TCGCGTTAGC
* * * *
26256767 TGATTTATGATCACGACCTTTTACTTATGGGATTTTACGAATCTCGTGGTCTGCTGATTTACGAT
1 TGATTTACGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCGGTCTACTGATTTACGAT
** *
26256832 CACAACCTTTAGCTTTATTACGGTCCGT
66 CATGACCTTTGGCTTTATTACGGTCCGT
*
26256860 TGATTTACGATCACGACCTTTTACTTACGGGATTTTACGAATCTTGCGGTCTACTGATTTACGAT
1 TGATTTACGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCGGTCTACTGATTTACGAT
* *
26256925 CATGACCTTTGGCTTTCTTACGATCCGT
66 CATGACCTTTGGCTTTATTACGGTCCGT
* * * * *
26256953 TGATTTACAATCACGACCTTTTACTTACGGGATTTAATGAATCTCGCAGT-TCACTAATTTACGA
1 TGATTTACGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCGGTCT-ACTGATTTACGA
* *
26257017 TCATGACCTTTGGCTTTATTACGGTTCGC
65 TCATGACCTTTGGCTTTATTACGGTCCGT
*
26257046 TGATTTACTATCACGACCTTT
1 TGATTTACGATCACGACCTTT
26257067 AGCTTTCTCA
Statistics
Matches: 185, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
92 1 0.01
93 184 0.99
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (93 bp):
TGATTTACGATCACGACCTTTTACTTACGGGATTTTACGAATCTCGCGGTCTACTGATTTACGAT
CATGACCTTTGGCTTTATTACGGTCCGT
Found at i:26257064 original size:39 final size:39
Alignment explanation
Indices: 26257009--26257096 Score: 113
Period size: 39 Copynumber: 2.3 Consensus size: 39
26256999 CAGTTCACTA
* * *
26257009 ATTTACGATCATGACCTTTGGCTTTATTACGGTTCGCTG
1 ATTTACGATCACGACCTTTAGCTTTATCACGGTTCGCTG
* * *
26257048 ATTTACTATCACGACCTTTAGCTTTCTCATGGTTCGCTG
1 ATTTACGATCACGACCTTTAGCTTTATCACGGTTCGCTG
*
26257087 ATTTATGATC
1 ATTTACGATC
26257097 GCAAACTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (39 bp):
ATTTACGATCACGACCTTTAGCTTTATCACGGTTCGCTG
Found at i:26261856 original size:27 final size:25
Alignment explanation
Indices: 26261826--26261888 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 25
26261816 TATTGTTGGC
26261826 AATAAATAATAATATATAA-AATTTAAA
1 AATAAATAATAA-ATA-AATAATTT-AA
*
26261853 AATATATAA-AAATAAATAATTTAA
1 AATAAATAATAAATAAATAATTTAA
26261877 AA-AAATAATAAA
1 AATAAATAATAAA
26261889 AATTTTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
23 5 0.16
24 9 0.28
25 8 0.25
26 2 0.06
27 8 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (25 bp):
AATAAATAATAAATAAATAATTTAA
Found at i:26261890 original size:27 final size:25
Alignment explanation
Indices: 26261829--26261890 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
26261819 TGTTGGCAAT
* *
26261829 AAATAATAATATATAAAATTTAAAA
1 AAATAATAAAAAATAAAATTTAAAA
*
26261854 ATAT-AT-AAAAATAAATAATTTAAAA
1 AAATAATAAAAAAT-AA-AATTTAAAA
26261879 AAATAATAAAAA
1 AAATAATAAAAA
26261891 TTTTATATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
23 4 0.14
24 4 0.14
25 15 0.52
26 2 0.07
27 4 0.14
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (25 bp):
AAATAATAAAAAATAAAATTTAAAA
Found at i:26262554 original size:30 final size:31
Alignment explanation
Indices: 26262511--26262572 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
26262501 AGAATTGTTG
*
26262511 AAAAAATTATAAATTTAT-TAAA-AATGATA
1 AAAAAATTATAAATTTATATAAATAATAATA
*
26262540 AAAAAATATTTAAATTTATATAAATAATAATA
1 AAAAAAT-TATAAATTTATATAAATAATAATA
26262572 A
1 A
26262573 TCATTAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 7 0.25
30 10 0.36
31 4 0.14
32 7 0.25
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (31 bp):
AAAAAATTATAAATTTATATAAATAATAATA
Done.