Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 76 of 210
Found at i:26548000 original size:25 final size:25
Alignment explanation
Indices: 26547972--26548023 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
26547962 AACTGTTATA
* *
26547972 AAAAATTATA-AAATAAAAATTAATT
1 AAAAATTACATAAATAAAAAAT-ATT
26547997 -AAAATTACATAAATAAAAAATATT
1 AAAAATTACATAAATAAAAAATATT
26548021 AAA
1 AAA
26548024 TAATATTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (25 bp):
AAAAATTACATAAATAAAAAATATT
Found at i:26548021 original size:24 final size:24
Alignment explanation
Indices: 26547973--26548023 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
26547963 ACTGTTATAA
* *
26547973 AAAATTATAAAATAAAAATTAATT
1 AAAATTACAAAATAAAAAATAATT
26547997 AAAATTACATAAATAAAAAAT-ATT
1 AAAATTACA-AAATAAAAAATAATT
26548021 AAA
1 AAA
26548024 TAATATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (24 bp):
AAAATTACAAAATAAAAAATAATT
Found at i:26554716 original size:31 final size:31
Alignment explanation
Indices: 26554658--26554827 Score: 98
Period size: 31 Copynumber: 5.6 Consensus size: 31
26554648 TTTTTGGTCC
* * *
26554658 AATTTGATA-CTCAAACCTGACAATTTTTCCT
1 AATTTGATACCT-AAACTTGATACTTTTTCCT
* *
26554689 AATTTGGTACCTAAACTTGATACTTTTTCTT
1 AATTTGATACCTAAACTTGATACTTTTTCCT
* * * * ****
26554720 AAGTTAATACTTAAACTT-TTA-GAGGT-CT
1 AATTTGATACCTAAACTTGATACTTTTTCCT
* * *
26554748 AATTTGATACTTAAACTTAACT-CTTTTTTCT
1 AATTTGATACCTAAACTTGA-TACTTTTTCCT
* *
26554779 AATTTGGTACCTAAACTTGATACTTTTTCTT
1 AATTTGATACCTAAACTTGATACTTTTTCCT
* * *
26554810 AAGTTAATACTTAAACTT
1 AATTTGATACCTAAACTT
26554828 TTAGAGGTCT
Statistics
Matches: 102, Mismatches: 31, Indels: 12
0.70 0.21 0.08
Matches are distributed among these distances:
28 17 0.17
29 1 0.01
30 5 0.05
31 77 0.75
32 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (31 bp):
AATTTGATACCTAAACTTGATACTTTTTCCT
Found at i:26554811 original size:90 final size:90
Alignment explanation
Indices: 26554653--26554882 Score: 397
Period size: 90 Copynumber: 2.6 Consensus size: 90
26554643 CTTCTTTTTT
* * * * ** *
26554653 GGTCCAATTTGATACTCAAACCTGACAATTTTTCCTAATTTGGTACCTAAACTTGATACTTTTTC
1 GGTCTAATTTGATACTTAAACTTAACTCTTTTTTCTAATTTGGTACCTAAACTTGATACTTTTTC
26554718 TTAAGTTAATACTTAAACTTTTAGA
66 TTAAGTTAATACTTAAACTTTTAGA
26554743 GGTCTAATTTGATACTTAAACTTAACTCTTTTTTCTAATTTGGTACCTAAACTTGATACTTTTTC
1 GGTCTAATTTGATACTTAAACTTAACTCTTTTTTCTAATTTGGTACCTAAACTTGATACTTTTTC
26554808 TTAAGTTAATACTTAAACTTTTAGA
66 TTAAGTTAATACTTAAACTTTTAGA
26554833 GGTCTAATTTGATACTTAAACTTAACTCTTTTTTCTAATTTGGTACCTAA
1 GGTCTAATTTGATACTTAAACTTAACTCTTTTTTCTAATTTGGTACCTAA
26554883 TCTTTTTTTT
Statistics
Matches: 133, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 133 1.00
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (90 bp):
GGTCTAATTTGATACTTAAACTTAACTCTTTTTTCTAATTTGGTACCTAAACTTGATACTTTTTC
TTAAGTTAATACTTAAACTTTTAGA
Found at i:26559454 original size:24 final size:24
Alignment explanation
Indices: 26559426--26559472 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26559416 AAGCCCAATA
*
26559426 ATGCCCGGGCCCAAGCAAACAAAT
1 ATGCCCGGGCCCAAACAAACAAAT
*
26559450 ATGCCCGGGCCCAAACCAACAAA
1 ATGCCCGGGCCCAAACAAACAAA
26559473 CAAGACCCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.36, G:0.19, T:0.06
Consensus pattern (24 bp):
ATGCCCGGGCCCAAACAAACAAAT
Found at i:26562369 original size:19 final size:20
Alignment explanation
Indices: 26562325--26562370 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
26562315 AACGTCTCTT
*
26562325 TATGCA-TTCATTTCATGCA
1 TATGCATTTCATTACATGCA
26562344 T-TCGCATTTCATTACAT-CA
1 TAT-GCATTTCATTACATGCA
26562363 TATGCATT
1 TATGCATT
26562371 AAAGTCCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.04
19 12 0.52
20 10 0.43
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (20 bp):
TATGCATTTCATTACATGCA
Found at i:26580227 original size:18 final size:18
Alignment explanation
Indices: 26580206--26580242 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26580196 ATGTGTTTAG
*
26580206 TTATTTTTATTTAATTAA
1 TTATTTTAATTTAATTAA
*
26580224 TTATTTTAATTTATTTAA
1 TTATTTTAATTTAATTAA
26580242 T
1 T
26580243 AATATATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTTTAATTTAATTAA
Found at i:26580236 original size:22 final size:22
Alignment explanation
Indices: 26580211--26580257 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
26580201 TTTAGTTATT
26580211 TTTATTTAATTAAT-TATTTTAA
1 TTTATTTAA-TAATATATTTTAA
*
26580233 TTTATTTAATAATATATTTTTA
1 TTTATTTAATAATATATTTTAA
26580255 TTT
1 TTT
26580258 CATATAGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTATTTAATAATATATTTTAA
Found at i:26586950 original size:13 final size:13
Alignment explanation
Indices: 26586934--26586986 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
26586924 TTTAAACCAA
26586934 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
26586947 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
26586960 ACTTTTCCATAA-T
1 ACTTTT-CAAAAGC
26586973 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
26586986 A
1 A
26586987 ATGAAGAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
12 4 0.12
13 24 0.75
14 4 0.12
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:26587492 original size:44 final size:44
Alignment explanation
Indices: 26587418--26587504 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
26587408 ATTATGATAT
* *
26587418 CCTCGTATCTCCAAGACGACGTAGGCCATACCCACAAATCATGG
1 CCTCATATATCCAAGACGACGTAGGCCATACCCACAAATCATGG
* *
26587462 CCTCATATATCCAAGACGATGTAGGTCATACCCACAAATCATG
1 CCTCATATATCCAAGACGACGTAGGCCATACCCACAAATCATG
26587505 CCTTATTTGC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (44 bp):
CCTCATATATCCAAGACGACGTAGGCCATACCCACAAATCATGG
Found at i:26593116 original size:21 final size:21
Alignment explanation
Indices: 26593092--26593131 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26593082 GGTTTTAACA
*
26593092 TTTATTTATGATTAATTATTG
1 TTTAATTATGATTAATTATTG
*
26593113 TTTAATTATGTTTAATTAT
1 TTTAATTATGATTAATTAT
26593132 GCAAATAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (21 bp):
TTTAATTATGATTAATTATTG
Found at i:26593124 original size:10 final size:10
Alignment explanation
Indices: 26593092--26593132 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
26593082 GGTTTTAACA
*
26593092 TTTATTTATG
1 TTTAATTATG
*
26593102 ATTAATTATTG
1 TTTAATTA-TG
26593113 TTTAATTATG
1 TTTAATTATG
26593123 TTTAATTATG
1 TTTAATTATG
26593133 CAAATAAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (10 bp):
TTTAATTATG
Found at i:26595168 original size:18 final size:18
Alignment explanation
Indices: 26595140--26595175 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
26595130 AAAATTCAGA
26595140 AATTTAGTTTTTT-TTTT
1 AATTTAGTTTTTTATTTT
26595157 AATTTGAGTTTTTTATTTT
1 AATTT-AGTTTTTTATTTT
26595176 TAATGATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 8 0.47
19 4 0.24
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.72
Consensus pattern (18 bp):
AATTTAGTTTTTTATTTT
Found at i:26599931 original size:39 final size:40
Alignment explanation
Indices: 26599888--26599964 Score: 97
Period size: 39 Copynumber: 1.9 Consensus size: 40
26599878 ACAAGCGAGA
26599888 GAAAAAGAAAAGAGTG-AAAAC-ACAAAAGAAAA-GAAAAAT
1 GAAAAAG-AAAGAG-GAAAAACTACAAAAGAAAATGAAAAAT
* *
26599927 GAAAAAGATAGAGGAAAAACTACGAAAGAAAATGAAAA
1 GAAAAAGAAAGAGGAAAAACTACAAAAGAAAATGAAAA
26599965 GAAAGTGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
37 1 0.03
38 10 0.30
39 17 0.52
40 5 0.15
ACGTcount: A:0.69, C:0.05, G:0.19, T:0.06
Consensus pattern (40 bp):
GAAAAAGAAAGAGGAAAAACTACAAAAGAAAATGAAAAAT
Found at i:26600006 original size:18 final size:17
Alignment explanation
Indices: 26599966--26600010 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
26599956 AAATGAAAAG
*
26599966 AAAGTG-AAAAAAGACA
1 AAAGTGAAAAAAAAACA
*
26599982 AAGGTGAAAAAGAAAACA
1 AAAGTGAAAAA-AAAACA
26600000 AAAGTGAAAAA
1 AAAGTGAAAAA
26600011 TTGAGTGCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 5 0.21
17 4 0.17
18 15 0.62
ACGTcount: A:0.69, C:0.04, G:0.20, T:0.07
Consensus pattern (17 bp):
AAAGTGAAAAAAAAACA
Found at i:26603281 original size:35 final size:35
Alignment explanation
Indices: 26603235--26603302 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
26603225 TTTAATGATA
* ** *
26603235 TCTAAATTGTGTCCAGTCGAATTTAATGTTGCTTT
1 TCTAAAGTGTGTCCACCCGAATTTAATGCTGCTTT
26603270 TCTAAAGTGTGTCCACCCGAATTTAATGCTGCT
1 TCTAAAGTGTGTCCACCCGAATTTAATGCTGCT
26603303 GGTTAAATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.40
Consensus pattern (35 bp):
TCTAAAGTGTGTCCACCCGAATTTAATGCTGCTTT
Found at i:26614267 original size:25 final size:25
Alignment explanation
Indices: 26614235--26614287 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
26614225 CTGTTTTTTA
26614235 TTTTCATTTTATAACAATAATTAAT
1 TTTTCATTTTATAACAATAATTAAT
26614260 TTTTCATTTTATAACAATAATTAAT
1 TTTTCATTTTATAACAATAATTAAT
26614285 TTT
1 TTT
26614288 CAATTTTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.55
Consensus pattern (25 bp):
TTTTCATTTTATAACAATAATTAAT
Found at i:26614293 original size:25 final size:24
Alignment explanation
Indices: 26614234--26614294 Score: 104
Period size: 25 Copynumber: 2.5 Consensus size: 24
26614224 TCTGTTTTTT
26614234 ATTTTCATTTTATAACAATAATTA
1 ATTTTCATTTTATAACAATAATTA
26614258 ATTTTTCATTTTATAACAATAATTA
1 A-TTTTCATTTTATAACAATAATTA
26614283 ATTTTCAATTTT
1 ATTTTC-ATTTT
26614295 GGTCTTTCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.17
25 29 0.83
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (24 bp):
ATTTTCATTTTATAACAATAATTA
Found at i:26617340 original size:26 final size:23
Alignment explanation
Indices: 26617274--26617343 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
26617264 GCGCAATCAC
*
26617274 TTTTT-TTTATATTAAAATATTA
1 TTTTTATTTTTATTAAAATATTA
* * *
26617296 TTTTTACTTTAAATAAAATATTA
1 TTTTTATTTTTATTAAAATATTA
26617319 TTATTTTATTTTTATTAGAAATATT
1 -T-TTTTATTTTTATTA-AAATATT
26617344 TAAATATATA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
22 5 0.14
23 13 0.35
24 1 0.03
25 11 0.30
26 7 0.19
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (23 bp):
TTTTTATTTTTATTAAAATATTA
Found at i:26617883 original size:60 final size:59
Alignment explanation
Indices: 26617815--26617931 Score: 207
Period size: 60 Copynumber: 2.0 Consensus size: 59
26617805 TATGAATGTA
* *
26617815 AATTTTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTGT
1 AATTTTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTGT
26617874 AATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTT
1 AATT-TTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTT
26617932 AGTTTAGTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
59 4 0.07
60 51 0.93
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.55
Consensus pattern (59 bp):
AATTTTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTGT
Found at i:26618913 original size:15 final size:15
Alignment explanation
Indices: 26618893--26618922 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26618883 CCAAAGTCTC
26618893 TATTTATAGGCATAA
1 TATTTATAGGCATAA
26618908 TATTTATAGGCATAA
1 TATTTATAGGCATAA
26618923 GAAGTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
TATTTATAGGCATAA
Found at i:26627877 original size:6 final size:6
Alignment explanation
Indices: 26627866--26627916 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
26627856 GGCAACCCAA
* * * *
26627866 TTTTAT TTTTAT TTATAT ATAT-T TTTTAT TTTATTT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT TTTTAT TTTTAT
26627914 TTT
1 TTT
26627917 CTTGCATGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
5 3 0.08
6 29 0.78
7 5 0.14
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:26627911 original size:14 final size:14
Alignment explanation
Indices: 26627871--26627916 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 14
26627861 CCCAATTTTA
26627871 TTTTTATTTATATATAT
1 TTTTTATTT-T-TAT-T
26627888 TTTTTA-TTTTATT
1 TTTTTATTTTTATT
26627901 TTTTTATTTTTATT
1 TTTTTATTTTTATT
26627915 TT
1 TT
26627917 CTTGCATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.25
14 12 0.43
15 1 0.04
16 2 0.07
17 6 0.21
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:26628383 original size:3 final size:3
Alignment explanation
Indices: 26628375--26628410 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
26628365 ACCTATTTGT
*
26628375 TTC TTC TTC TTC TTC TTC TTC TTT TTCC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT-C TTC TTC TT
26628411 GCTATGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 28 0.93
4 2 0.07
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:26629880 original size:21 final size:20
Alignment explanation
Indices: 26629847--26629888 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
26629837 CTCTATTTTG
* *
26629847 TTTAGTTTTACAATTTCAAT
1 TTTAATTTTACAATCTCAAT
26629867 TTTAATTTATACAATCTCAAT
1 TTTAATTT-TACAATCTCAAT
26629888 T
1 T
26629889 CGTCCATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.52
Consensus pattern (20 bp):
TTTAATTTTACAATCTCAAT
Found at i:26632603 original size:16 final size:17
Alignment explanation
Indices: 26632579--26632611 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26632569 TCATGTCATG
*
26632579 GTATCATGTATA-ATCA
1 GTATAATGTATATATCA
26632595 GTATAATGTATATATCA
1 GTATAATGTATATATCA
26632612 TGCTCAACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (17 bp):
GTATAATGTATATATCA
Found at i:26634968 original size:16 final size:16
Alignment explanation
Indices: 26634947--26634977 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26634937 ACTTTAGGGG
26634947 CAAAATGTAATTTTTC
1 CAAAATGTAATTTTTC
*
26634963 CAAAATGTGATTTTT
1 CAAAATGTAATTTTT
26634978 GGACTGGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (16 bp):
CAAAATGTAATTTTTC
Found at i:26635387 original size:102 final size:101
Alignment explanation
Indices: 26635202--26635393 Score: 278
Period size: 102 Copynumber: 1.9 Consensus size: 101
26635192 AAAGTGATGG
* * **
26635202 TCACATGTGTAGTACTATGTGCAGGGTACTATGTCTACCAGAATGATAGGTTGCATGTGTAGTAC
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGAATGATAGGTCACATGTGTAGTAC
* *
26635267 TATGTGCAGGCTACTATGTGTACCGTATAGCTTCGA
66 TATGTACAGGCTACTATGTGAACCGTATAGCTTCGA
* * *
26635303 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTGAT-GGTCACATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGA-A-TGATAGGTCACATGTGTAGT
26635367 ACTATGTACAGGCTACTATGTGAACCG
64 ACTATGTACAGGCTACTATGTGAACCG
26635394 GTATCATTAA
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
101 37 0.46
102 39 0.49
103 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGAATGATAGGTCACATGTGTAGTAC
TATGTACAGGCTACTATGTGAACCGTATAGCTTCGA
Found at i:26635394 original size:51 final size:52
Alignment explanation
Indices: 26635194--26635394 Score: 243
Period size: 51 Copynumber: 4.0 Consensus size: 52
26635184 TGAAAGTGAA
* * *
26635194 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGGTACTATGTCTACCAGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT
** *
26635244 A-TGATAGGTTGCATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGTAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT
* * * *
26635295 AGCT--TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
1 AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT
* *
26635346 AGTGAT-GGTCACATGTGTAGTACTATGTACAGGCTACTATGTGAACCGG
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGG
26635395 TATCATTAAT
Statistics
Matches: 127, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
49 4 0.03
50 40 0.31
51 81 0.64
52 1 0.01
53 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (52 bp):
AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT
Found at i:26635633 original size:16 final size:16
Alignment explanation
Indices: 26635612--26635643 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26635602 TGATTGAAAG
*
26635612 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
26635628 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
26635644 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:26646008 original size:34 final size:34
Alignment explanation
Indices: 26645962--26646029 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
26645952 ACAAATAATC
*
26645962 TCAGTTTGGGCCTAAGCCC-TTTTCAGTATCAGTA
1 TCAGTTTAGGCCTAAGCCCATTTT-AGTATCAGTA
26645996 TCAGTTTAGGCCTAAGCCCATTTTAGTATCAGTA
1 TCAGTTTAGGCCTAAGCCCATTTTAGTATCAGTA
26646030 AGCATTAGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (34 bp):
TCAGTTTAGGCCTAAGCCCATTTTAGTATCAGTA
Found at i:26646042 original size:34 final size:34
Alignment explanation
Indices: 26645969--26646047 Score: 92
Period size: 34 Copynumber: 2.3 Consensus size: 34
26645959 ATCTCAGTTT
*
26645969 GGGCCTAAGCCCTTTTCAGTATCAGTATCAGTTTA
1 GGGCCTAAGCCCTTTTCAGTATCAGTA-CAGATTA
26646004 -GGCCTAAGCCCATTTT-AGTATCAGTA-AGCATTA
1 GGGCCTAAGCCC-TTTTCAGTATCAGTACAG-ATTA
*
26646037 GGGCCTTAGCC
1 GGGCCTAAGCC
26646048 TATCACAGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
32 2 0.05
33 3 0.08
34 30 0.77
35 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (34 bp):
GGGCCTAAGCCCTTTTCAGTATCAGTACAGATTA
Found at i:26647578 original size:38 final size:40
Alignment explanation
Indices: 26647525--26647604 Score: 137
Period size: 38 Copynumber: 2.0 Consensus size: 40
26647515 AATTAGGATA
*
26647525 ACTCCACAGTCCCATATTTTCCTTCTAAAATCACTCCAAC
1 ACTCCACAGTCCCATATTTTCCTCCTAAAATCACTCCAAC
26647565 ACTCCA-A-TCCCATATTTTCCTCCTAAAATCACTCCAAC
1 ACTCCACAGTCCCATATTTTCCTCCTAAAATCACTCCAAC
26647603 AC
1 AC
26647605 CCCCCACCTC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 32 0.82
39 1 0.03
40 6 0.15
ACGTcount: A:0.31, C:0.39, G:0.01, T:0.29
Consensus pattern (40 bp):
ACTCCACAGTCCCATATTTTCCTCCTAAAATCACTCCAAC
Found at i:26671873 original size:7 final size:7
Alignment explanation
Indices: 26671854--26671886 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
26671844 CATTTACCCA
26671854 ATTTATCT
1 ATTTAT-T
26671862 ATTTATT
1 ATTTATT
26671869 ATTTATT
1 ATTTATT
26671876 ATTTATT
1 ATTTATT
26671883 ATTT
1 ATTT
26671887 TACTTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (7 bp):
ATTTATT
Found at i:26671894 original size:21 final size:21
Alignment explanation
Indices: 26671870--26671986 Score: 77
Period size: 21 Copynumber: 5.7 Consensus size: 21
26671860 CTATTTATTA
26671870 TTTATTATTTA-TTATTTTACT
1 TTTATTATTTATTTATTTTA-T
* *
26671891 TTTATT-CTGATTTATTTTAT
1 TTTATTATTTATTTATTTTAT
*
26671911 TTT-TTCTTTCATTTATTTTA-
1 TTTATTATTT-ATTTATTTTAT
* *
26671931 TTT-TTA-GTATTTATTCT-T
1 TTTATTATTTATTTATTTTAT
* *
26671949 CTTATTATTTATCTTATTTTGT
1 TTTATTATTTAT-TTATTTTAT
*
26671971 TTTCTTATTTTATTTA
1 TTTATTA-TTTATTTA
26671987 GCTTGATTAT
Statistics
Matches: 75, Mismatches: 12, Indels: 17
0.72 0.12 0.16
Matches are distributed among these distances:
18 10 0.13
19 6 0.08
20 15 0.20
21 30 0.40
22 9 0.12
23 5 0.07
ACGTcount: A:0.19, C:0.07, G:0.03, T:0.72
Consensus pattern (21 bp):
TTTATTATTTATTTATTTTAT
Found at i:26686836 original size:12 final size:13
Alignment explanation
Indices: 26686819--26686850 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
26686809 GGACTTTTGG
26686819 TTTTTGGATT-AA
1 TTTTTGGATTCAA
26686831 TTTTTGGATTCAA
1 TTTTTGGATTCAA
26686844 TTTTTGG
1 TTTTTGG
26686851 TTTCGGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.19, C:0.03, G:0.19, T:0.59
Consensus pattern (13 bp):
TTTTTGGATTCAA
Found at i:26688960 original size:18 final size:18
Alignment explanation
Indices: 26688937--26688971 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26688927 AATCTCTTAT
26688937 GGTCAAGGTTACTATGCG
1 GGTCAAGGTTACTATGCG
26688955 GGTCAAGGTTACTATGC
1 GGTCAAGGTTACTATGC
26688972 AGCTGATGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (18 bp):
GGTCAAGGTTACTATGCG
Found at i:26690943 original size:42 final size:42
Alignment explanation
Indices: 26690896--26690983 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
26690886 CTCTACTAGG
*
26690896 TTCTCCACCAGATATTGATTTGGTGCAATCTCAGTCCAATGC
1 TTCTCCACCAGATATTGATTTGGTGCAATCTCAGTCCAATAC
** *
26690938 TTCTCCATTAGATGTTGATTTGGTGCAATCTCAGTCCAATAC
1 TTCTCCACCAGATATTGATTTGGTGCAATCTCAGTCCAATAC
26690980 TTCT
1 TTCT
26690984 TCGGCTGATC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (42 bp):
TTCTCCACCAGATATTGATTTGGTGCAATCTCAGTCCAATAC
Found at i:26695932 original size:19 final size:19
Alignment explanation
Indices: 26695904--26695956 Score: 69
Period size: 18 Copynumber: 2.9 Consensus size: 19
26695894 TTTTAAAAAT
26695904 ATAA-ATTTTAGAATTTT-
1 ATAATATTTTAGAATTTTA
26695921 ATAAATATTTTA-AATTTTA
1 AT-AATATTTTAGAATTTTA
26695940 ATAATATTTTAG-ATTTT
1 ATAATATTTTAGAATTTT
26695957 CAAAAGTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 2 0.06
18 22 0.69
19 8 0.25
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (19 bp):
ATAATATTTTAGAATTTTA
Found at i:26695938 original size:18 final size:17
Alignment explanation
Indices: 26695908--26695976 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 17
26695898 AAAAATATAA
26695908 ATTTTAGAATTTTATAAAT
1 ATTTTA-AATTTTA-AAAT
26695927 ATTTTAAATTTTAATAAT
1 ATTTTAAATTTTAA-AAT
*
26695945 ATTTTAGATTTTCAAAAGTT
1 ATTTTAAATTTT-AAAA--T
*
26695965 AATTTAAATTTT
1 ATTTTAAATTTT
26695977 TTAAAAATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
17 1 0.02
18 23 0.53
19 8 0.19
20 11 0.26
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (17 bp):
ATTTTAAATTTTAAAAT
Found at i:26696469 original size:12 final size:12
Alignment explanation
Indices: 26696452--26696476 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26696442 GTTTGGTTAG
26696452 AGTAATTCAATT
1 AGTAATTCAATT
26696464 AGTAATTCAATT
1 AGTAATTCAATT
26696476 A
1 A
26696477 ATTGGTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
AGTAATTCAATT
Found at i:26696686 original size:26 final size:25
Alignment explanation
Indices: 26696637--26696692 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
26696627 ATTGTTATTA
* * * *
26696637 AATTTTAATAAGATTATTATTAAAT
1 AATTTTAATAAAAATAATAATAAAT
26696662 ATATTTTAATAAAAATAATAATAAAT
1 A-ATTTTAATAAAAATAATAATAAAT
26696688 AATTT
1 AATTT
26696693 AATCATATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
AATTTTAATAAAAATAATAATAAAT
Found at i:26696733 original size:61 final size:61
Alignment explanation
Indices: 26696649--26696805 Score: 171
Period size: 61 Copynumber: 2.6 Consensus size: 61
26696639 TTTTAATAAG
* * * *
26696649 ATTATTATTAAATATATTTTAATAAAAATAATAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAATACAATTTAATAAAAATAATAAT-AATAATTTAATAACATTCTTAACATA
* *
26696710 ATTATTGTTAAATACAATTTAAT-AAAATAAT-AT-ATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATACAATTTAATAAAAATAATAATAATAATTTAATAACATTCTTAACATA
* *
26696768 ATTATTATTAAAATATGAA-TTAATAAAAAATCATAATA
1 ATTATTATT-AAATA-CAATTTAAT-AAAAATAATAATA
26696806 TCATAATATA
Statistics
Matches: 80, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
57 14 0.17
58 15 0.19
59 12 0.15
60 10 0.12
61 27 0.34
62 2 0.03
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (61 bp):
ATTATTATTAAATACAATTTAATAAAAATAATAATAATAATTTAATAACATTCTTAACATA
Found at i:26700685 original size:6 final size:7
Alignment explanation
Indices: 26700666--26700692 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26700656 AATTAAACTT
26700666 ATAAAAA
1 ATAAAAA
26700673 ATAAAAA
1 ATAAAAA
26700680 ATAAAAA
1 ATAAAAA
26700687 ATAAAA
1 ATAAAA
26700693 TTAACGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
ATAAAAA
Found at i:26708362 original size:45 final size:45
Alignment explanation
Indices: 26708297--26708390 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
26708287 AACAGATACT
* * *
26708297 CGGTGGATTCAGCACCTAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
26708342 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
26708387 CGGT
1 CGGT
26708391 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:26708454 original size:51 final size:50
Alignment explanation
Indices: 26708396--26708529 Score: 189
Period size: 50 Copynumber: 2.7 Consensus size: 50
26708386 TCGGTTCACA
*
26708396 TAGTAGCCTGCACATAGTACTACACATGTGACCGTTACCA-TCCGATACATG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC--TACCATTCCGATACACG
** *
26708447 TAGTAGCCTGCACATAGTACTACACATACGACCTATCATTCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTACCATTCCGATACACG
* *
26708497 TAGTAGCTTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACATGTGACC
26708530 ATCACTTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 4 0.05
50 39 0.53
51 31 0.42
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCTACCATTCCGATACACG
Found at i:26714926 original size:9 final size:9
Alignment explanation
Indices: 26714905--26714933 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
26714895 GTAATAAATG
26714905 AATAAAA-A
1 AATAAAACA
26714913 AATAAAACA
1 AATAAAACA
26714922 AATAAAACA
1 AATAAAACA
26714931 AAT
1 AAT
26714934 CAAGCTTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.35
9 13 0.65
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (9 bp):
AATAAAACA
Found at i:26718278 original size:514 final size:514
Alignment explanation
Indices: 26717311--26718336 Score: 1926
Period size: 514 Copynumber: 2.0 Consensus size: 514
26717301 CCGGCATCGG
*
26717311 ATACGGGTTAGGGGTGTTACACCCATAAGTGGAGAATATGATGAAATTGGTGAGATTTTTGGGTG
1 ATACGGGTTAGGGGTGTTACACCCATAAGTGGAGAATATCATGAAATTGGTGAGATTTTTGGGTG
26717376 ATTTCTTGAAGATTTAGAGAGGTTTAATGCTTGGAAATGATAGAAATTCAAAGTATTATAGTTTG
66 ATTTCTTGAAGATTTAGAGAGGTTTAATGCTTGGAAATGATAGAAATTCAAAGTATTATAGTTTG
26717441 GGAGTCAAAAATCAATTGAGATAGTGAGGAATAGCAAGGGACAGCAACACTAAGGAGATAGGAAA
131 GGAGTCAAAAATCAATTGAGATAGTGAGGAATAGCAAGGGACAGCAACACTAAGGAGATAGGAAA
26717506 AAGCATTCGTGAAAATAACTAGGAATGGAGGTTTATTACGTTGATTTTGAGAAATTGGATTAATT
196 AAGCATTCGTGAAAATAACTAGGAATGGAGGTTTATTACGTTGATTTTGAGAAATTGGATTAATT
26717571 GCTTCATAAAGACTCACAACTTTAACCCTTTTACAAACCATTCGTTTTTCTAAAACTAAAGACAT
261 GCTTCATAAAGACTCACAACTTTAACCCTTTTACAAACCATTCGTTTTTCTAAAACTAAAGACAT
* * * *
26717636 TTAAAACTCGTTTCCCAAAATTGACTTAACTCTATGAAAACCATTGTCGAAAACATTATCGTGTA
326 TTAAAACTCGTTTCCAAAAATTAACTTAACTCTATCAAAACCATTATCGAAAACATTATCGTGTA
26717701 CCAATCTTATGAAATTTCGAGCTCATATAGGCTAAAATTCCTAAAATACCCCTAAAACTCCTAGG
391 CCAATCTTATGAAATTTCGAGCTCATATAGGCTAAAATTCCTAAAATACCCCTAAAACTCCTAGG
*
26717766 CCCTATTTTAGGGTGTTATAAAAGGTATGTTAAAAATGAAAAATAAGAAGCAATAAGCA
456 CCCTATTTCAGGGTGTTATAAAAGGTATGTTAAAAATGAAAAATAAGAAGCAATAAGCA
26717825 ATACGGGTTAGGGGTGTTACACCCATAAGTGGAGAATATCATGAAATTGGTGAGATTTTTGGGTG
1 ATACGGGTTAGGGGTGTTACACCCATAAGTGGAGAATATCATGAAATTGGTGAGATTTTTGGGTG
26717890 ATTTCTTGAAGATTTAGAGAGGTTTAATGCTTGGAAATGATAGAAATTCAAAGTATTATAGTTTG
66 ATTTCTTGAAGATTTAGAGAGGTTTAATGCTTGGAAATGATAGAAATTCAAAGTATTATAGTTTG
* *
26717955 GGAGTCAAAAATCTATTGAGATAGTGAGGAATAGCAAGGGACAGCAACACTAAGGAGATATGAAA
131 GGAGTCAAAAATCAATTGAGATAGTGAGGAATAGCAAGGGACAGCAACACTAAGGAGATAGGAAA
* *
26718020 AATCATTCGTGAAAATAACTGGGAATGGAGGTTTATTACGTTGATTTTGAGAAATTGGATTAATT
196 AAGCATTCGTGAAAATAACTAGGAATGGAGGTTTATTACGTTGATTTTGAGAAATTGGATTAATT
*
26718085 GCTTCATAAAGACTCACAACTTTAACCCTTTTACAAACCATTCGTTTTTCTAAAATTAAAGACAT
261 GCTTCATAAAGACTCACAACTTTAACCCTTTTACAAACCATTCGTTTTTCTAAAACTAAAGACAT
*
26718150 TTAAAACTCGTTTCCAAAAATTAACTTAACTCTATCAAAACCATTATTGAAAACATTATCGTGTA
326 TTAAAACTCGTTTCCAAAAATTAACTTAACTCTATCAAAACCATTATCGAAAACATTATCGTGTA
* *
26718215 CTAATCTTATGAAATTTCGAGCTCATATAGGTTAAAATTCCTAAAATACCCCTAAAACTCCTAGG
391 CCAATCTTATGAAATTTCGAGCTCATATAGGCTAAAATTCCTAAAATACCCCTAAAACTCCTAGG
26718280 CCCTATTTCAGGGTGTTATAAAAGGTATGTTAAAAATGAAAAATAAGAAGCAATAAG
456 CCCTATTTCAGGGTGTTATAAAAGGTATGTTAAAAATGAAAAATAAGAAGCAATAAG
26718337 TAACTTTAAA
Statistics
Matches: 498, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
514 498 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (514 bp):
ATACGGGTTAGGGGTGTTACACCCATAAGTGGAGAATATCATGAAATTGGTGAGATTTTTGGGTG
ATTTCTTGAAGATTTAGAGAGGTTTAATGCTTGGAAATGATAGAAATTCAAAGTATTATAGTTTG
GGAGTCAAAAATCAATTGAGATAGTGAGGAATAGCAAGGGACAGCAACACTAAGGAGATAGGAAA
AAGCATTCGTGAAAATAACTAGGAATGGAGGTTTATTACGTTGATTTTGAGAAATTGGATTAATT
GCTTCATAAAGACTCACAACTTTAACCCTTTTACAAACCATTCGTTTTTCTAAAACTAAAGACAT
TTAAAACTCGTTTCCAAAAATTAACTTAACTCTATCAAAACCATTATCGAAAACATTATCGTGTA
CCAATCTTATGAAATTTCGAGCTCATATAGGCTAAAATTCCTAAAATACCCCTAAAACTCCTAGG
CCCTATTTCAGGGTGTTATAAAAGGTATGTTAAAAATGAAAAATAAGAAGCAATAAGCA
Found at i:26719179 original size:20 final size:20
Alignment explanation
Indices: 26719151--26719195 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
26719141 TAATATGTAT
*
26719151 TGTCCTAACTGAATTAAATG
1 TGTCTTAACTGAATTAAATG
* *
26719171 TGTCTTAACTTAATTAATTG
1 TGTCTTAACTGAATTAAATG
26719191 TGTCT
1 TGTCT
26719196 AGTTTTAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (20 bp):
TGTCTTAACTGAATTAAATG
Found at i:26720183 original size:22 final size:22
Alignment explanation
Indices: 26720139--26720197 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
26720129 CAATATCGTA
* * *
26720139 CCTAAACCAAAAGCCATTTCGTG
1 CCTAAACCTAAA-TCATTACGTG
* *
26720162 CTTAAACTTAAATCATTACGTG
1 CCTAAACCTAAATCATTACGTG
26720184 CCTAAACCTAAATC
1 CCTAAACCTAAATC
26720198 GTCTTCGACC
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
22 20 0.69
23 9 0.31
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (22 bp):
CCTAAACCTAAATCATTACGTG
Found at i:26725973 original size:20 final size:20
Alignment explanation
Indices: 26725945--26725989 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
26725935 TAATATGTCT
26725945 TGTCCTAACCGAATTAAATG
1 TGTCCTAACCGAATTAAATG
* ** *
26725965 TGTCTTAACTTAATTAATTG
1 TGTCCTAACCGAATTAAATG
26725985 TGTCC
1 TGTCC
26725990 AATTTTAATT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (20 bp):
TGTCCTAACCGAATTAAATG
Found at i:26731505 original size:45 final size:45
Alignment explanation
Indices: 26731339--26731507 Score: 218
Period size: 45 Copynumber: 3.8 Consensus size: 45
26731329 TTGAAAAACG
* *
26731339 AATAAGACCATAGTTGAAAGACACTATGGCACTACA--CCAGAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCA-T-CATGCCGGAAATA
* *
26731384 AATAAAACCATAGTTGAAAGACACTATGGCA-CTATGCCGGAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCATC-ATGCCGGAAATA
*
26731429 AATAAGACCATAGTTGAAAGACACTATGGCATCATGTCGGAAATA
1 AATAAGACCATAGTTGAAAGACACTATGGCATCATGCCGGAAATA
* * *
26731474 AATATGACCATGGTTGAAAGACGCTATGGCATCA
1 AATAAGACCATAGTTGAAAGACACTATGGCATCA
26731508 GTGAACAATT
Statistics
Matches: 112, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
45 109 0.97
46 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (45 bp):
AATAAGACCATAGTTGAAAGACACTATGGCATCATGCCGGAAATA
Found at i:26731725 original size:13 final size:13
Alignment explanation
Indices: 26731680--26731765 Score: 66
Period size: 13 Copynumber: 6.5 Consensus size: 13
26731670 AATGTGTGAA
26731680 ATGAAATGATTAT
1 ATGAAATGATTAT
* *
26731693 ACGAAAT-AGTTGT
1 ATGAAATGA-TTAT
*
26731706 ACGAAATGATTAT
1 ATGAAATGATTAT
* * *
26731719 ATAAAATGAATAA
1 ATGAAATGATTAT
*
26731732 ATGAAATGGTTAT
1 ATGAAATGATTAT
* *
26731745 GTGAATTGATTAT
1 ATGAAATGATTAT
26731758 ATGGAAAT
1 AT-GAAAT
26731766 AGATCTATGA
Statistics
Matches: 54, Mismatches: 16, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
12 1 0.02
13 48 0.89
14 5 0.09
ACGTcount: A:0.45, C:0.02, G:0.19, T:0.34
Consensus pattern (13 bp):
ATGAAATGATTAT
Found at i:26736439 original size:43 final size:42
Alignment explanation
Indices: 26736295--26736461 Score: 124
Period size: 43 Copynumber: 3.9 Consensus size: 42
26736285 TTACTGAGAG
* *
26736295 GTGATAACATGTAAGACCATGTCTGGGACATTGGCATTGTATT
1 GTGATAACATGTAAGACCATGTCTGGGATATTGGCATTG-ATA
* ** * *
26736338 GTGATTATGTGTAAGACCATGTCTGGTATATTGGCATCATTATA
1 GTGATAACATGTAAGACCATGTCTGGGATATTGGCAT--TGATA
* ** * * * *
26736382 -TAATTTCGTATAAGACCTTGTCTGGGATAGTGGCATTGATA
1 GTGATAACATGTAAGACCATGTCTGGGATATTGGCATTGATA
* *
26736423 CGTGATAACATGTAAGACTAT-ACATGGGATA-TGGCATTG
1 -GTGATAACATGTAAGACCATGTC-TGGGATATTGGCATTG
26736462 TATGAGCTAT
Statistics
Matches: 96, Mismatches: 23, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
41 4 0.04
42 9 0.09
43 80 0.83
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.34
Consensus pattern (42 bp):
GTGATAACATGTAAGACCATGTCTGGGATATTGGCATTGATA
Found at i:26737114 original size:26 final size:24
Alignment explanation
Indices: 26737084--26737177 Score: 102
Period size: 26 Copynumber: 3.8 Consensus size: 24
26737074 GGACTCACCA
26737084 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCGTATGAGCTTACCGAT-T-T
*
26737110 CAGCTCTTATGAGCTTACC-ATTT
1 CAGCTCGTATGAGCTTACCGATTT
*
26737133 CAGCTCG-ATAGAGCTTACCGTTCTT
1 CAGCTCGTAT-GAGCTTACCGAT-TT
*
26737158 CAGCTCGGAATGAGCTTACC
1 CAGCTC-GTATGAGCTTACC
26737178 AATCATGGCT
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
22 2 0.03
23 16 0.27
24 2 0.03
25 10 0.17
26 28 0.47
27 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (24 bp):
CAGCTCGTATGAGCTTACCGATTT
Found at i:26737171 original size:49 final size:49
Alignment explanation
Indices: 26737084--26737178 Score: 122
Period size: 49 Copynumber: 1.9 Consensus size: 49
26737074 GGACTCACCA
**
26737084 CAGCTCGTATGAGCTTACCGATATATCAGCTCTTATGAGCTTACCATTT
1 CAGCTCGTATGAGCTTACCGATATATCAGCTCGAATGAGCTTACCATTT
* *
26737133 CAGCTCG-ATAGAGCTTACCGTTCT-TCAGCTCGGAATGAGCTTACCA
1 CAGCTCGTAT-GAGCTTACCGATATATCAGCTC-GAATGAGCTTACCA
26737179 ATCATGGCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
48 9 0.22
49 31 0.77
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (49 bp):
CAGCTCGTATGAGCTTACCGATATATCAGCTCGAATGAGCTTACCATTT
Found at i:26739780 original size:28 final size:28
Alignment explanation
Indices: 26739706--26739787 Score: 83
Period size: 33 Copynumber: 2.8 Consensus size: 28
26739696 ATTAGAAATC
* *
26739706 TAAAAAAAACCCTAAATCCTACTTTAAA
1 TAAACAAAACCCTAAAACCTACTTTAAA
*
26739734 TAAACAAAACATTAACCTAAAACCTCCTTTAAA
1 TAAACAAAAC-----CCTAAAACCTACTTTAAA
*
26739767 TAAACAAAACCCTAAACCCTA
1 TAAACAAAACCCTAAAACCTA
26739788 AAAAATGGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
28 18 0.41
33 26 0.59
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (28 bp):
TAAACAAAACCCTAAAACCTACTTTAAA
Found at i:26762287 original size:19 final size:19
Alignment explanation
Indices: 26762255--26762297 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
26762245 TAAAATTAAT
*
26762255 AATAAAACAATAGTTATAC
1 AATAAAACAATAGTAATAC
* * *
26762274 AATAAAATAGTAGTAATAT
1 AATAAAACAATAGTAATAC
26762293 AATAA
1 AATAA
26762298 CGAAATGGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (19 bp):
AATAAAACAATAGTAATAC
Found at i:26768766 original size:19 final size:19
Alignment explanation
Indices: 26768724--26768771 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
26768714 TACAAAAAAA
26768724 ATTATTAT--TAAATATTT
1 ATTATTATAATAAATATTT
* *
26768741 GTAATTATAATAAATATTT
1 ATTATTATAATAAATATTT
*
26768760 ATTATTAAAATA
1 ATTATTATAATA
26768772 TTAATATTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 6 0.25
19 18 0.75
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (19 bp):
ATTATTATAATAAATATTT
Found at i:26781017 original size:14 final size:13
Alignment explanation
Indices: 26780998--26781039 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
26780988 TAGTTTAGTT
26780998 TTAATTAAACTTAA
1 TTAATT-AACTTAA
26781012 TTAATTAACTTAA
1 TTAATTAACTTAA
26781025 TCATAATTAA-TTAA
1 T--TAATTAACTTAA
26781039 T
1 T
26781040 CACTAATCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 8 0.31
14 11 0.42
15 7 0.27
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (13 bp):
TTAATTAACTTAA
Found at i:26789166 original size:23 final size:23
Alignment explanation
Indices: 26789140--26789189 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
26789130 TCAAATTGCT
26789140 TGATAACAATCGCTTTCTCAATC
1 TGATAACAATCGCTTTCTCAATC
* ** *
26789163 TGATTATTATCGCTTTCTCAATT
1 TGATAACAATCGCTTTCTCAATC
26789186 TGAT
1 TGAT
26789190 TAATATGTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.10, T:0.44
Consensus pattern (23 bp):
TGATAACAATCGCTTTCTCAATC
Found at i:26789190 original size:23 final size:23
Alignment explanation
Indices: 26789148--26789191 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
26789138 CTTGATAACA
26789148 ATCGCTTTCTCAATCTGATTATT
1 ATCGCTTTCTCAATCTGATTATT
*
26789171 ATCGCTTTCTCAATTTGATTA
1 ATCGCTTTCTCAATCTGATTA
26789192 ATATGTCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.20, G:0.09, T:0.48
Consensus pattern (23 bp):
ATCGCTTTCTCAATCTGATTATT
Found at i:26791411 original size:60 final size:61
Alignment explanation
Indices: 26791327--26791449 Score: 149
Period size: 60 Copynumber: 2.0 Consensus size: 61
26791317 AAAGAAGAAG
* * * * *
26791327 AGCTAATTAAGCTGAATATACTTCATTGGATGGCTCAAGCAAAAGTTAGAG-AAAACAAAA
1 AGCTAATTAAGCTAAAAATACTTCATTAGACGACTCAAGCAAAAGTTAGAGCAAAACAAAA
* * * * *
26791387 AGCTCATTAAGCTAAAAATCCTTCATTAGACGACTTAAGCAAAAGTTAGTGCAAAAGAAAA
1 AGCTAATTAAGCTAAAAATACTTCATTAGACGACTCAAGCAAAAGTTAGAGCAAAACAAAA
26791448 AG
1 AG
26791450 AAAAAAAAAG
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
60 42 0.81
61 10 0.19
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.23
Consensus pattern (61 bp):
AGCTAATTAAGCTAAAAATACTTCATTAGACGACTCAAGCAAAAGTTAGAGCAAAACAAAA
Found at i:26792432 original size:22 final size:20
Alignment explanation
Indices: 26792393--26792432 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
26792383 GGTGGAAATT
*
26792393 TCCTTGAAGTTTCTTGAACA
1 TCCTTGAAGTTCCTTGAACA
26792413 TCCTTGGAAGCTTCCTTGAA
1 TCCTT-GAAG-TTCCTTGAA
26792433 GTTTCCTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 4 0.24
22 8 0.47
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (20 bp):
TCCTTGAAGTTCCTTGAACA
Found at i:26793721 original size:12 final size:12
Alignment explanation
Indices: 26793704--26793733 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26793694 GTAGGTTTCC
26793704 AAAATGGAAATA
1 AAAATGGAAATA
26793716 AAAATGGAAATA
1 AAAATGGAAATA
*
26793728 GAAATG
1 AAAATG
26793734 ATTCATTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (12 bp):
AAAATGGAAATA
Found at i:26793914 original size:25 final size:26
Alignment explanation
Indices: 26793879--26793927 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
26793869 ACATATTTTC
*
26793879 TCAAAATTTTATTAGGGGTAAAATTG
1 TCAAAATTTTACTAGGGGTAAAATTG
*
26793905 TCAAAA-TTTACTGGGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
26793928 AAGGATAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATTG
Found at i:26796457 original size:12 final size:12
Alignment explanation
Indices: 26796440--26796465 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26796430 CAAAACAAGC
26796440 TTTTAGCGGCGT
1 TTTTAGCGGCGT
26796452 TTTTAGCGGCGT
1 TTTTAGCGGCGT
26796464 TT
1 TT
26796466 GGACAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:26796499 original size:41 final size:39
Alignment explanation
Indices: 26796454--26796586 Score: 115
Period size: 41 Copynumber: 3.3 Consensus size: 39
26796444 AGCGGCGTTT
*
26796454 TTAGCGGCGTTTGGACAAAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGCGTTT-GA-AAAAAACGCCGCTAAAAATCAAGCA
* * ** *
26796495 TTAGCGACGCTTTTATAAAAAACGCCGCTAAAGGTCGAGCA
1 TTAGCGGCG-TTTGA-AAAAAACGCCGCTAAAAATCAAGCA
* *** *
26796536 TTAGCTGCGCTTTTTGAAAAACGCCGCTAAAAAT-AAGAA
1 TTAGCGGCG-TTTGAAAAAAACGCCGCTAAAAATCAAGCA
26796575 TTAGCGGCGTTT
1 TTAGCGGCGTTT
26796587 TTTGAAAAGC
Statistics
Matches: 75, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
38 3 0.04
39 11 0.15
40 16 0.21
41 42 0.56
42 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.23
Consensus pattern (39 bp):
TTAGCGGCGTTTGAAAAAAACGCCGCTAAAAATCAAGCA
Found at i:26796589 original size:39 final size:40
Alignment explanation
Indices: 26796471--26796606 Score: 150
Period size: 39 Copynumber: 3.4 Consensus size: 40
26796461 CGTTTGGACA
* * * *
26796471 AAAAACGCCACTAAAAATCAAGCATTAGCGACGCTTTTATA
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGGCG-TTTTTTG
** * * *
26796512 AAAAACGCCGCTAAAGGTCGAGCATTAGCTGCGCTTTTTG
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTTTG
*
26796552 AAAAACGCCGCTAAAAAT-AAGAATTAGCGGCGTTTTTTG
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTTTG
*
26796591 AAAAGCGCCGC-AAAAA
1 AAAAACGCCGCTAAAAA
26796607 GCCTAAGCCC
Statistics
Matches: 79, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
38 5 0.06
39 27 0.34
40 20 0.25
41 27 0.34
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTTTG
Found at i:26796702 original size:41 final size:41
Alignment explanation
Indices: 26796657--26796747 Score: 164
Period size: 41 Copynumber: 2.2 Consensus size: 41
26796647 TTTAAAAGCG
26796657 TTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
1 TTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
* *
26796698 TTTTTGAAGAAGCGCCGCTAATTCTCGGGCCTTTAGCGGCG
1 TTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
26796739 TTTTTGAAG
1 TTTTTGAAG
26796748 CCTTTAGCGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.31
Consensus pattern (41 bp):
TTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCA
Found at i:26796750 original size:21 final size:21
Alignment explanation
Indices: 26796726--26796768 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
26796716 TAATTCTCGG
26796726 GCCTTTAGCGGCGTTTTTGAA
1 GCCTTTAGCGGCGTTTTTGAA
26796747 GCCTTTAGCGGCGTTTTTGAA
1 GCCTTTAGCGGCGTTTTTGAA
26796768 G
1 G
26796769 AAGCGCCGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.19, G:0.30, T:0.37
Consensus pattern (21 bp):
GCCTTTAGCGGCGTTTTTGAA
Found at i:26796764 original size:62 final size:62
Alignment explanation
Indices: 26796685--26796809 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
26796675 TAATGCTCGG
* *
26796685 GCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATTCTCGGGCCTTTAGCGGCGTTTTTGAA
1 GCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCAGGCCTTTAGCGGCGTTTTTGAA
*
26796747 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCAGGCCTTTAGCGGCGTTTTTGAA
1 GCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCAGGCCTTTAGCGGCGTTTTTGAA
26796809 G
1 G
26796810 AAGCGCCGCT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.31
Consensus pattern (62 bp):
GCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCAGGCCTTTAGCGGCGTTTTTGAA
Found at i:26796814 original size:103 final size:103
Alignment explanation
Indices: 26796654--26796850 Score: 358
Period size: 103 Copynumber: 1.9 Consensus size: 103
26796644 GCCTTTAAAA
*
26796654 GCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAA
1 GCGTTTTTGAAGAAGCGCCGCTAATGCTCAGGCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAA
* *
26796719 TTCTCGGGCCTTTAGCGGCGTTTTTGAAGCCTTTAGCG
66 TGCTCAGGCCTTTAGCGGCGTTTTTGAAGCCTTTAGCG
*
26796757 GCGTTTTTGAAGAAGCGCCGCTAATGCTCAGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAA
1 GCGTTTTTGAAGAAGCGCCGCTAATGCTCAGGCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAA
26796822 TGCTCAGGCCTTTAGCGGCGTTTTTGAAG
66 TGCTCAGGCCTTTAGCGGCGTTTTTGAAG
26796851 AAGCGCCGCT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 90 1.00
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.29
Consensus pattern (103 bp):
GCGTTTTTGAAGAAGCGCCGCTAATGCTCAGGCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAA
TGCTCAGGCCTTTAGCGGCGTTTTTGAAGCCTTTAGCG
Found at i:26796891 original size:42 final size:41
Alignment explanation
Indices: 26796747--26796897 Score: 266
Period size: 41 Copynumber: 3.7 Consensus size: 41
26796737 CGTTTTTGAA
26796747 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCAG
1 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCAG
26796788 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCAG
1 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCAG
* *
26796829 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAACGCTCTG
1 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCAG
*
26796870 GCCTTTTAGCGGCGTTTTTGAAAAAGCG
1 GCC-TTTAGCGGCGTTTTTGAAGAAGCG
26796898 TCGCAAAAAC
Statistics
Matches: 106, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
41 83 0.78
42 23 0.22
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (41 bp):
GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCAG
Found at i:26797167 original size:8 final size:7
Alignment explanation
Indices: 26797102--26797400 Score: 82
Period size: 7 Copynumber: 42.7 Consensus size: 7
26797092 TATGGTTTGT
*
26797102 GGTTTAC
1 GGTTTAG
26797109 GGTTTAAG
1 GGTTT-AG
*
26797117 GG-TTGG
1 GGTTTAG
*
26797123 GGTTTAA
1 GGTTTAG
26797130 GGTTTAG
1 GGTTTAG
* *
26797137 GTGTTGAA
1 G-GTTTAG
*
26797145 GGTTAAG
1 GGTTTAG
26797152 GG-TTAGG
1 GGTTTA-G
26797159 GGTTTAG
1 GGTTTAG
*
26797166 GGTTTAT
1 GGTTTAG
* *
26797173 AGTTTAT
1 GGTTTAG
* *
26797180 AGTTTAT
1 GGTTTAG
* *
26797187 GTTTTAT
1 GGTTTAG
* * *
26797194 GATTCAA
1 GGTTTAG
26797201 GGTTTAG
1 GGTTTAG
*
26797208 GG--GAG
1 GGTTTAG
* *
26797213 GGATTAT
1 GGTTTAG
26797220 GGTTT-G
1 GGTTTAG
*
26797226 TGGTTTAC
1 -GGTTTAG
26797234 GGTTTAAG
1 GGTTT-AG
*
26797242 GG-TTGG
1 GGTTTAG
*
26797248 GGTTTAA
1 GGTTTAG
26797255 GGTTTA-
1 GGTTTAG
26797261 GGTGTTAGG
1 GGT-TTA-G
* *
26797270 GGTTAAA
1 GGTTTAG
*
26797277 GGTTTAT
1 GGTTTAG
*
26797284 AGTTTAG
1 GGTTTAG
26797291 GGTTTAG
1 GGTTTAG
*
26797298 GGGTTAG
1 GGTTTAG
*
26797305 GGTTTAA
1 GGTTTAG
26797312 GGTTTA-
1 GGTTTAG
*
26797318 GGTGGTAGG
1 GGT-TTA-G
*
26797327 GGTTAAG
1 GGTTTAG
* *
26797334 GG-ATGG
1 GGTTTAG
26797340 GGTTTAG
1 GGTTTAG
* *
26797347 GGGTTAT
1 GGTTTAG
*
26797354 TGTTTAG
1 GGTTTAG
26797361 GGTTTAAG
1 GGTTT-AG
26797369 GG-TT-G
1 GGTTTAG
*
26797374 GTGTTTAA
1 G-GTTTAG
26797382 GGTTTAG
1 GGTTTAG
26797389 GGTCTT-G
1 GGT-TTAG
26797396 GGTTT
1 GGTTT
26797401 TTAAGATAGG
Statistics
Matches: 213, Mismatches: 56, Indels: 47
0.67 0.18 0.15
Matches are distributed among these distances:
5 6 0.03
6 20 0.09
7 157 0.74
8 24 0.11
9 6 0.03
ACGTcount: A:0.18, C:0.01, G:0.39, T:0.41
Consensus pattern (7 bp):
GGTTTAG
Found at i:26797289 original size:36 final size:35
Alignment explanation
Indices: 26797249--26797317 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
26797239 AAGGGTTGGG
*
26797249 GTTTAAGGTTTAGGTGTTAGGGGTTAAAGGTTTATA
1 GTTTAAGGTTTAGGGGTTA-GGGTTAAAGGTTTATA
* *
26797285 GTTTAGGGTTTAGGGGTTAGGGTTTAAGGTTTA
1 GTTTAAGGTTTAGGGGTTAGGGTTAAAGGTTTA
26797318 GGTGGTAGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 13 0.43
36 17 0.57
ACGTcount: A:0.22, C:0.00, G:0.36, T:0.42
Consensus pattern (35 bp):
GTTTAAGGTTTAGGGGTTAGGGTTAAAGGTTTATA
Found at i:26797290 original size:22 final size:22
Alignment explanation
Indices: 26797234--26797292 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
26797224 TGTGGTTTAC
* *
26797234 GGTTTAAGGGTT-GGGGTTTAA
1 GGTTTAAGTGTTAGGGGTTAAA
*
26797255 GGTTTAGGTGTTAGGGGTTAAA
1 GGTTTAAGTGTTAGGGGTTAAA
26797277 GGTTTATAGT-TTAGGG
1 GGTTTA-AGTGTTAGGG
26797293 TTTAGGGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 10 0.31
22 20 0.62
23 2 0.06
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (22 bp):
GGTTTAAGTGTTAGGGGTTAAA
Found at i:26797296 original size:125 final size:125
Alignment explanation
Indices: 26797000--26797266 Score: 534
Period size: 125 Copynumber: 2.1 Consensus size: 125
26796990 AATGGACAAA
26797000 TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGGGTTTAGGGTTTATAGTTTATAGTTTATGTT
1 TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGGGTTTAGGGTTTATAGTTTATAGTTTATGTT
26797065 TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
66 TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
26797125 TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGGGTTTAGGGTTTATAGTTTATAGTTTATGTT
1 TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGGGTTTAGGGTTTATAGTTTATAGTTTATGTT
26797190 TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
66 TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
26797250 TTTAAGGTTTAGGTGTT
1 TTTAAGGTTTAGGTGTT
26797267 AGGGGTTAAA
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 142 1.00
ACGTcount: A:0.20, C:0.01, G:0.36, T:0.43
Consensus pattern (125 bp):
TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGGGTTTAGGGTTTATAGTTTATAGTTTATGTT
TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
Found at i:26797310 original size:125 final size:125
Alignment explanation
Indices: 26797000--26797310 Score: 473
Period size: 125 Copynumber: 2.5 Consensus size: 125
26796990 AATGGACAAA
* * * *
26797000 TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGGGTTTAGGGTTTATAGTTTATAGTTTATGTT
1 TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGAGTTTAGGGTTTAGAGGTTAGAGTTTATGTT
26797065 TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
66 TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
* * * *
26797125 TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGGGTTTAGGGTTTATAGTTTATAGTTTATGTT
1 TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGAGTTTAGGGTTTAGAGGTTAGAGTTTATGTT
26797190 TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
66 TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
* * * * *
26797250 TTTAAGGTTTAGGTGTT-AGGGGTTAAAGGTTTA-TAGTTTAGGGTTTAGGGGTTAGGGTTTA
1 TTTAAGGTTTAGGTGTTGA-AGGTT-AAGGGTTAGGAGTTTAGGGTTTAGAGGTTAGAGTTTA
26797311 AGGTTTAGGT
Statistics
Matches: 175, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
124 1 0.01
125 167 0.95
126 7 0.04
ACGTcount: A:0.20, C:0.01, G:0.36, T:0.42
Consensus pattern (125 bp):
TTTAAGGTTTAGGTGTTGAAGGTTAAGGGTTAGGAGTTTAGGGTTTAGAGGTTAGAGTTTATGTT
TTATGATTCAAGGTTTAGGGGAGGGATTATGGTTTGTGGTTTACGGTTTAAGGGTTGGGG
Found at i:26799713 original size:17 final size:17
Alignment explanation
Indices: 26799691--26799733 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
26799681 AATATATAAT
26799691 ATTATAATGCAAAATTA
1 ATTATAATGCAAAATTA
26799708 ATTATAATGCAAAATTA
1 ATTATAATGCAAAATTA
26799725 ATATATAAT
1 AT-TATAAT
26799734 ATTATAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (17 bp):
ATTATAATGCAAAATTA
Found at i:26801701 original size:43 final size:42
Alignment explanation
Indices: 26801651--26801862 Score: 275
Period size: 43 Copynumber: 4.9 Consensus size: 42
26801641 GTTGGTGACA
*
26801651 AAAAGCGCCTCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCT-TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGG
*
26801694 AAAAGCGCCGTTAAAGGTCATGGTCTTTAGCAGCGTTTGTGGG
1 AAAAGCGCC-TTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGG
* *
26801737 AAAAGCGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTT-TGGG
1 AAAAGCGCC-TTAAAGGTCATGGTCTTTAGCGGCG-TTTGTGGG
* *
26801780 AAAAGCGCCGGTAAAGGT-ATTGGTCTTTAGCGGCGTTTGTAGG
1 AAAAGCGCC-TTAAAGGTCA-TGGTCTTTAGCGGCGTTTGTGGG
* *
26801823 AAAAGCGCCGTTAAAGGTCTTGTTCTTTAGCGGCGTTTGT
1 AAAAGCGCC-TTAAAGGTCATGGTCTTTAGCGGCGTTTGT
26801863 TTCTAAAAAC
Statistics
Matches: 153, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
42 4 0.03
43 145 0.95
44 4 0.03
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.29
Consensus pattern (42 bp):
AAAAGCGCCTTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGG
Found at i:26801796 original size:86 final size:86
Alignment explanation
Indices: 26801651--26801862 Score: 320
Period size: 86 Copynumber: 2.5 Consensus size: 86
26801641 GTTGGTGACA
* *
26801651 AAAAGCGCCTCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCA-T
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGGTAAAGGT-ATT
*
26801715 GGTCTTTAGCAGCGTTTGTGGG
65 GGTCTTTAGCAGCGTTTGTAGG
* *
26801737 AAAAGCGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTT-TGGGAAAAGCGCCGGTAAAGGTATT
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCG-TTTGTGGGAAAAGCGCCGGTAAAGGTATT
*
26801801 GGTCTTTAGCGGCGTTTGTAGG
65 GGTCTTTAGCAGCGTTTGTAGG
* *
26801823 AAAAGCGCCGTTAAAGGTCTTGTTCTTTAGCGGCGTTTGT
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGT
26801863 TTCTAAAAAC
Statistics
Matches: 113, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
85 4 0.04
86 106 0.94
87 3 0.03
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.29
Consensus pattern (86 bp):
AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGGTAAAGGTATTG
GTCTTTAGCAGCGTTTGTAGG
Found at i:26803926 original size:2 final size:2
Alignment explanation
Indices: 26803921--26804028 Score: 110
Period size: 2 Copynumber: 53.5 Consensus size: 2
26803911 ACGAAAGAAA
* * * *
26803921 AG AG AG AG GG AA AG AG AG AG AG AG A- ATT AG AA AG AG ATG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A-G AG AG AG AG A-G AG AG
* * * * *
26803964 AG AG AG TG TG TG AG TG AG AG AG GG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
26804006 AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG A
26804029 ATTAGAATAA
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
1 1 0.01
2 86 0.96
3 3 0.03
ACGTcount: A:0.46, C:0.00, G:0.47, T:0.06
Consensus pattern (2 bp):
AG
Found at i:26806610 original size:54 final size:55
Alignment explanation
Indices: 26806527--26806635 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 55
26806517 ATACTTATAT
*
26806527 CCTTATTATTTACTTTTAGGGTTTTTTTATTTATGAATTAAAATAAATATAATAA
1 CCTTATTATTTACTTTTAGGGGTTTTTTATTTATGAATTAAAATAAATATAATAA
26806582 CCTTATTA-TTACTTTTAGGGGTTTTTTATTTATGAATTAAAATAAATATAATAA
1 CCTTATTATTTACTTTTAGGGGTTTTTTATTTATGAATTAAAATAAATATAATAA
26806636 TATTTTAAAC
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 45 0.85
55 8 0.15
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.50
Consensus pattern (55 bp):
CCTTATTATTTACTTTTAGGGGTTTTTTATTTATGAATTAAAATAAATATAATAA
Found at i:26818108 original size:16 final size:16
Alignment explanation
Indices: 26818087--26818119 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26818077 TAATGATATT
*
26818087 TTTTATTTTTAAATAA
1 TTTTATTTTAAAATAA
26818103 TTTTATTTTAAAATAA
1 TTTTATTTTAAAATAA
26818119 T
1 T
26818120 AAGATTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTATTTTAAAATAA
Found at i:26818313 original size:173 final size:174
Alignment explanation
Indices: 26818114--26818460 Score: 678
Period size: 173 Copynumber: 2.0 Consensus size: 174
26818104 TTTATTTTAA
26818114 AATAATAAGATTTAAAATTTTTAATATTAATATTTATTTCAATTTTAATATATTTAAATTTCATA
1 AATAATAAGATTTAAAATTTTTAATATTAATATTTATTTCAATTTTAATATATTTAAATTTCATA
26818179 ATTTATTTTATTATGCTTTTAATGAAAAAATTATAGCCTCCATCACTTATGACTTGTATTATAAA
66 ATTTATTTTATTATGCTTTTAATGAAAAAATTATAGCCTCCATCACTTATGACTTGTATTATAAA
*
26818244 AGGTAAAAAATCAAGACAAATTAATTCATCGTGTTTTTCTTCAT
131 AGGTAAAAAATCAAGACAAATTAATTCATCGTATTTTTCTTCAT
26818288 AATAATAAGA-TTAAAATTTTTAATATTAATATTTATTTCAATTTTAATATATTTAAATTTCATA
1 AATAATAAGATTTAAAATTTTTAATATTAATATTTATTTCAATTTTAATATATTTAAATTTCATA
26818352 ATTTATTTTATTATGCTTTTAATGAAAAAATTATAGCCTCCATCACTTATGACTTGTATTATAAA
66 ATTTATTTTATTATGCTTTTAATGAAAAAATTATAGCCTCCATCACTTATGACTTGTATTATAAA
26818417 AGGTAAAAAATCAAGACAAATTAATTCATCGTATTTTTCTTCAT
131 AGGTAAAAAATCAAGACAAATTAATTCATCGTATTTTTCTTCAT
26818461 CAAATCCGAT
Statistics
Matches: 172, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
173 162 0.94
174 10 0.06
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (174 bp):
AATAATAAGATTTAAAATTTTTAATATTAATATTTATTTCAATTTTAATATATTTAAATTTCATA
ATTTATTTTATTATGCTTTTAATGAAAAAATTATAGCCTCCATCACTTATGACTTGTATTATAAA
AGGTAAAAAATCAAGACAAATTAATTCATCGTATTTTTCTTCAT
Found at i:26821091 original size:14 final size:13
Alignment explanation
Indices: 26821066--26821106 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
26821056 GGTAAATAGT
*
26821066 TAATTAAATTATA
1 TAATTTAATTATA
26821079 TAATTTAATTTATA
1 TAATTTAA-TTATA
26821093 TAATTTAATTATA
1 TAATTTAATTATA
26821106 T
1 T
26821107 TGTACATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TAATTTAATTATA
Found at i:26822057 original size:18 final size:18
Alignment explanation
Indices: 26822030--26822071 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26822020 GTATCACCCA
**
26822030 CCTCCACCTCTCATATAT
1 CCTCCACCTCAAATATAT
*
26822048 CCTCCTCCTCAAATATAT
1 CCTCCACCTCAAATATAT
26822066 CCTCCA
1 CCTCCA
26822072 TATCAATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.45, G:0.00, T:0.31
Consensus pattern (18 bp):
CCTCCACCTCAAATATAT
Found at i:26822077 original size:18 final size:18
Alignment explanation
Indices: 26822042--26822083 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
26822032 TCCACCTCTC
*
26822042 ATATATCCTCCTCCTCAA
1 ATATATCCTCCTCATCAA
26822060 ATATATCCTCCAT-ATCAA
1 ATATATCCTCC-TCATCAA
*
26822078 TTATAT
1 ATATAT
26822084 GAAAACCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (18 bp):
ATATATCCTCCTCATCAA
Found at i:26825311 original size:16 final size:16
Alignment explanation
Indices: 26825290--26825324 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
26825280 TATATTTCCT
26825290 CATAATATACTACTAA
1 CATAATATACTACTAA
26825306 CATAATATACTACTAA
1 CATAATATACTACTAA
26825322 CAT
1 CAT
26825325 TTTTTTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.31
Consensus pattern (16 bp):
CATAATATACTACTAA
Found at i:26832335 original size:22 final size:22
Alignment explanation
Indices: 26832308--26832349 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
26832298 AATCAATGCG
26832308 ATAATTATTTAAATAA-AATAGT
1 ATAATTATTT-AATAATAATAGT
26832330 ATAATTATTTAATAATAATA
1 ATAATTATTTAATAATAATA
26832350 ATTTTTAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
ATAATTATTTAATAATAATAGT
Found at i:26835414 original size:119 final size:119
Alignment explanation
Indices: 26835280--26835520 Score: 473
Period size: 119 Copynumber: 2.0 Consensus size: 119
26835270 CATACTTTTT
*
26835280 TTTTTTTTTTTTTTTCCAACACAATTCTCAAATACTTTCTCAAAGGACATTACTATGGTGTTAGC
1 TTTTTTTTTTCTTTTCCAACACAATTCTCAAATACTTTCTCAAAGGACATTACTATGGTGTTAGC
26835345 TGCAAATTATTATTATTCAGCCAAATTGAGGGTGCATTTATTGATAAATGCAAG
66 TGCAAATTATTATTATTCAGCCAAATTGAGGGTGCATTTATTGATAAATGCAAG
26835399 TTTTTTTTTTCTTTTCCAACACAATTCTCAAATACTTTCTCAAAGGACATTACTATGGTGTTAGC
1 TTTTTTTTTTCTTTTCCAACACAATTCTCAAATACTTTCTCAAAGGACATTACTATGGTGTTAGC
26835464 TGCAAATTATTATTATTCAGCCAAATTGAGGGTGCATTTATTGATAAATGCAAG
66 TGCAAATTATTATTATTCAGCCAAATTGAGGGTGCATTTATTGATAAATGCAAG
26835518 TTT
1 TTT
26835521 GTAAATTAAT
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 121 1.00
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.41
Consensus pattern (119 bp):
TTTTTTTTTTCTTTTCCAACACAATTCTCAAATACTTTCTCAAAGGACATTACTATGGTGTTAGC
TGCAAATTATTATTATTCAGCCAAATTGAGGGTGCATTTATTGATAAATGCAAG
Found at i:26839472 original size:21 final size:20
Alignment explanation
Indices: 26839446--26839501 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
26839436 AAGCTGAGCT
26839446 AAATTTAATTGATTTTTCTTC
1 AAATTTAATTGATTTTT-TTC
* *
26839467 AAATTTACTTAATTTTTTTC
1 AAATTTAATTGATTTTTTTC
**
26839487 TTATTTAATTG-TTTT
1 AAATTTAATTGATTTT
26839502 CAGCTTTTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
19 4 0.14
20 10 0.34
21 15 0.52
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.62
Consensus pattern (20 bp):
AAATTTAATTGATTTTTTTC
Found at i:26845507 original size:5 final size:5
Alignment explanation
Indices: 26845497--26845530 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
26845487 AAAATTACAC
26845497 ATTTT ATTTT ATTTT -TTTCT ATTTT ATTTT ATTT
1 ATTTT ATTTT ATTTT ATTT-T ATTTT ATTTT ATTT
26845531 GCAGGTAGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 3 0.11
5 21 0.78
6 3 0.11
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:26845972 original size:14 final size:14
Alignment explanation
Indices: 26845949--26845978 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26845939 ACTTAGTTTG
*
26845949 AAAAATAAAAAGAA
1 AAAAAGAAAAAGAA
26845963 AAAAAGAAAAAGAA
1 AAAAAGAAAAAGAA
26845977 AA
1 AA
26845979 TAATAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (14 bp):
AAAAAGAAAAAGAA
Found at i:26846475 original size:48 final size:48
Alignment explanation
Indices: 26846406--26846499 Score: 188
Period size: 48 Copynumber: 2.0 Consensus size: 48
26846396 TGGAGGAAAT
26846406 TTTTCTTTTGCAGATACATACAAAATGCTCGAGGACTAGCATGAGCAA
1 TTTTCTTTTGCAGATACATACAAAATGCTCGAGGACTAGCATGAGCAA
26846454 TTTTCTTTTGCAGATACATACAAAATGCTCGAGGACTAGCATGAGC
1 TTTTCTTTTGCAGATACATACAAAATGCTCGAGGACTAGCATGAGC
26846500 TAAGTAGGGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (48 bp):
TTTTCTTTTGCAGATACATACAAAATGCTCGAGGACTAGCATGAGCAA
Found at i:26853670 original size:5 final size:5
Alignment explanation
Indices: 26853660--26853685 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26853650 TGAGCATTCG
26853660 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
26853686 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:26855946 original size:11 final size:11
Alignment explanation
Indices: 26855886--26855945 Score: 57
Period size: 11 Copynumber: 5.1 Consensus size: 11
26855876 AAAAGTATAG
26855886 AAAAAAATTAT
1 AAAAAAATTAT
26855897 AAATTATAAATTAT
1 AAA--A-AAATTAT
*
26855911 AAAAAAATCAT
1 AAAAAAATTAT
*
26855922 AAAAAAATAAAT
1 AAAAAAAT-TAT
*
26855934 ATAAAAATTAT
1 AAAAAAATTAT
26855945 A
1 A
26855946 TTTTAATAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 20 0.49
12 10 0.24
13 1 0.02
14 10 0.24
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAAAAATTAT
Found at i:26858928 original size:21 final size:20
Alignment explanation
Indices: 26858904--26858954 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 20
26858894 CCCGAATGCA
26858904 TATAAAATATATTATAAATAT
1 TATAAAATATATTATAAAT-T
* *
26858925 TATACATTATATTATAAATT
1 TATAAAATATATTATAAATT
26858945 T-T-AAATATAT
1 TATAAAATATAT
26858955 AAAATCCAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 6 0.23
19 1 0.04
20 2 0.08
21 17 0.65
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
TATAAAATATATTATAAATT
Found at i:26874709 original size:3 final size:3
Alignment explanation
Indices: 26874701--26874731 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
26874691 GCTAGGCAGT
26874701 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
26874732 ATTTCTAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:26874901 original size:3 final size:3
Alignment explanation
Indices: 26874893--26874926 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
26874883 TCATCTCCAT
26874893 TTC TTC TTC TTC TTC TTC TT- TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
26874927 TTTTTGTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:26874918 original size:14 final size:14
Alignment explanation
Indices: 26874893--26874928 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
26874883 TCATCTCCAT
26874893 TTCTTCTTCTTCTTC
1 TTCTT-TTCTTCTTC
26874908 TTCTTTTCTTCTTC
1 TTCTTTTCTTCTTC
26874922 TTCTTTT
1 TTCTTTT
26874929 TTTGTTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
TTCTTTTCTTCTTC
Found at i:26874931 original size:17 final size:17
Alignment explanation
Indices: 26874896--26874930 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
26874886 TCTCCATTTC
26874896 TTCTTCTTCTTCTTCTT
1 TTCTTCTTCTTCTTCTT
26874913 TTCTTCTTCTTCTT-TT
1 TTCTTCTTCTTCTTCTT
26874929 TT
1 TT
26874931 TGTTAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTCTTCTTCTTCTTCTT
Found at i:26875422 original size:29 final size:31
Alignment explanation
Indices: 26875361--26875421 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
26875351 GGAGAAGAAT
26875361 AAGTATAAACATATTGGGCTATTTATGTAAA
1 AAGTATAAACATATTGGGCTATTTATGTAAA
26875392 AAGTA-AAA-ATATTGGG-TCATTTAT-TAAA
1 AAGTATAAACATATTGGGCT-ATTTATGTAAA
26875420 AA
1 AA
26875422 ATAGAAAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
28 7 0.24
29 14 0.48
30 3 0.10
31 5 0.17
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.34
Consensus pattern (31 bp):
AAGTATAAACATATTGGGCTATTTATGTAAA
Found at i:26875429 original size:29 final size:29
Alignment explanation
Indices: 26875365--26875429 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
26875355 AAGAATAAGT
*
26875365 ATAAACATATTGGGCTATTTATGTAAAAA
1 ATAAAAATATTGGGCTATTTATGTAAAAA
*
26875394 GTAAAAATATTGGG-TCATTTAT-TAAAAA
1 ATAAAAATATTGGGCT-ATTTATGTAAAAA
26875422 ATAGAAAA
1 ATA-AAAA
26875430 GGAAACACGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.49, C:0.05, G:0.14, T:0.32
Consensus pattern (29 bp):
ATAAAAATATTGGGCTATTTATGTAAAAA
Found at i:26875506 original size:21 final size:21
Alignment explanation
Indices: 26875482--26875523 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26875472 CAACATGGCA
26875482 AGTTAACTAGCCACATCAGCT
1 AGTTAACTAGCCACATCAGCT
26875503 AGTTAACTAGCCACATCAGCT
1 AGTTAACTAGCCACATCAGCT
26875524 GTCCCGTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (21 bp):
AGTTAACTAGCCACATCAGCT
Found at i:26875624 original size:30 final size:31
Alignment explanation
Indices: 26875565--26875626 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
26875555 TGGGTAACTA
26875565 ATTTGTCATTTTTCAATAATGTTAGTGACTG
1 ATTTGTCATTTTTCAATAATGTTAGTGACTG
* *
26875596 ATTTGTTATTTTTCGA-AAT-TTGAGTGACTG
1 ATTTGTCATTTTTCAATAATGTT-AGTGACTG
26875626 A
1 A
26875627 ATTGAAATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 2 0.07
30 12 0.43
31 14 0.50
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.48
Consensus pattern (31 bp):
ATTTGTCATTTTTCAATAATGTTAGTGACTG
Found at i:26878044 original size:13 final size:12
Alignment explanation
Indices: 26878026--26878076 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
26878016 AAAAAGAATA
26878026 AATAATAACAAT
1 AATAATAACAAT
26878038 GAATAATAACAAT
1 -AATAATAACAAT
* *
26878051 AATAACAATAAT
1 AATAATAACAAT
26878063 AA-AATAACACAT
1 AATAATAACA-AT
26878075 AA
1 AA
26878077 CAAGACAGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
11 5 0.15
12 16 0.48
13 12 0.36
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.22
Consensus pattern (12 bp):
AATAATAACAAT
Found at i:26878053 original size:9 final size:9
Alignment explanation
Indices: 26878039--26878069 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
26878029 AATAACAATG
26878039 AATAATAAC
1 AATAATAAC
26878048 AATAATAAC
1 AATAATAAC
26878057 AATAATAA-
1 AATAATAAC
26878065 AATAA
1 AATAA
26878070 CACATAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (9 bp):
AATAATAAC
Found at i:26878241 original size:5 final size:5
Alignment explanation
Indices: 26878231--26878257 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26878221 GAAGTTCAAG
26878231 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
26878258 GCATCATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:26880685 original size:52 final size:52
Alignment explanation
Indices: 26880629--26880744 Score: 121
Period size: 52 Copynumber: 2.2 Consensus size: 52
26880619 TACATGCTTA
* * * *
26880629 AACAAACA-AAAAAAAGTCTTCAAGGTAGCACAT-GATAG-CTTTTAAAGTTGGC
1 AACAAA-AGAAAAAAAGTCTCCAAGGCAGCACATAG-TAGTC-TTGAAAGTTGAC
* *
26880681 AACAAAAGAAAAGAAGTGTCCAAGGCAGCACATAGTAGTCTTGAAAGTTGAC
1 AACAAAAGAAAAAAAGTCTCCAAGGCAGCACATAGTAGTCTTGAAAGTTGAC
*
26880733 AACAAAATAAAA
1 AACAAAAGAAAA
26880745 GGTCTCCAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
51 1 0.02
52 51 0.94
53 2 0.04
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (52 bp):
AACAAAAGAAAAAAAGTCTCCAAGGCAGCACATAGTAGTCTTGAAAGTTGAC
Found at i:26883614 original size:39 final size:41
Alignment explanation
Indices: 26883498--26883623 Score: 168
Period size: 40 Copynumber: 3.1 Consensus size: 41
26883488 CGTTTGGACA
*
26883498 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCA-CTTTACG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCATTTTTACG
* * * *
26883538 AAAATCGCTGCTAAAGATCGAGCATTAGCGGCGTTTTTA-G
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCATTTTTACG
* *
26883578 AAAAACGCCGTTAAAAAT-GAGCATTAGCGGCATTTTTAGG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCATTTTTACG
26883618 AAAAAC
1 AAAAAC
26883624 TTTGCAAAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 19 0.26
40 51 0.69
41 4 0.05
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.22
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAATCGAGCATTAGCGGCATTTTTACG
Found at i:26883821 original size:41 final size:41
Alignment explanation
Indices: 26883667--26883825 Score: 196
Period size: 40 Copynumber: 3.9 Consensus size: 41
26883657 CCTACCTTTC
* *
26883667 GGGG-CTTTAGTGGCGTTTTTGGAAAAGCGCCGCTAATGCT
1 GGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT
**
26883707 GGGGTCTTTAGCGGCG-TTTTGAAAAAGCGCCGCTGTTGCT
1 GGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT
** * * * *
26883747 GGGGGATTTAGCGGCTTTTTTTGGATAAGCGCCGCTAATGTT
1 GGGGTCTTTAGCGGC-GTTTTTGAAAAAGCGCCGCTAATGCT
*
26883789 GGTGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
1 GGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
26883826 AAATATTTTA
Statistics
Matches: 98, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
40 38 0.39
41 29 0.30
42 31 0.32
ACGTcount: A:0.18, C:0.18, G:0.33, T:0.31
Consensus pattern (41 bp):
GGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT
Found at i:26884072 original size:15 final size:15
Alignment explanation
Indices: 26884052--26884083 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26884042 TATTTTGAGG
26884052 TTTAGGGAGTATGGA
1 TTTAGGGAGTATGGA
*
26884067 TTTAGGGATTATGGA
1 TTTAGGGAGTATGGA
26884082 TT
1 TT
26884084 ATGGATTACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.41
Consensus pattern (15 bp):
TTTAGGGAGTATGGA
Found at i:26884155 original size:21 final size:21
Alignment explanation
Indices: 26884114--26884185 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
26884104 TGGGATTTAA
**
26884114 GGTTTAGGGGTTATGGGTTAG
1 GGTTTAGGGGTTATGCATTAG
26884135 GGTTTAGGGGTTA-GACATTAG
1 GGTTTAGGGGTTATG-CATTAG
* * * *
26884156 GGGTTAAGAGTTATGGATTTAG
1 GGTTTAGGGGTTATGCA-TTAG
26884178 GGTTTAGG
1 GGTTTAGG
26884186 AATTCAGGGG
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
20 1 0.03
21 28 0.70
22 11 0.28
ACGTcount: A:0.21, C:0.01, G:0.42, T:0.36
Consensus pattern (21 bp):
GGTTTAGGGGTTATGCATTAG
Found at i:26884394 original size:7 final size:7
Alignment explanation
Indices: 26884371--26884418 Score: 60
Period size: 7 Copynumber: 6.7 Consensus size: 7
26884361 GTTTAGGGAG
26884371 TATGGAT
1 TATGGAT
*
26884378 ATAGGGAT
1 -TATGGAT
26884386 TATGGAT
1 TATGGAT
*
26884393 TAGGGAT
1 TATGGAT
26884400 TATGGAT
1 TATGGAT
*
26884407 TAGGGAT
1 TATGGAT
26884414 TATGG
1 TATGG
26884419 TTTAAGGGTT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
7 28 0.82
8 6 0.18
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (7 bp):
TATGGAT
Found at i:26884398 original size:14 final size:14
Alignment explanation
Indices: 26884363--26884418 Score: 94
Period size: 14 Copynumber: 3.9 Consensus size: 14
26884353 ATTTTAAGGT
*
26884363 TTAGGGAGTATGGA
1 TTAGGGATTATGGA
26884377 TATAGGGATTATGGA
1 T-TAGGGATTATGGA
26884392 TTAGGGATTATGGA
1 TTAGGGATTATGGA
26884406 TTAGGGATTATGG
1 TTAGGGATTATGG
26884419 TTTAAGGGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
14 27 0.68
15 13 0.32
ACGTcount: A:0.29, C:0.00, G:0.38, T:0.34
Consensus pattern (14 bp):
TTAGGGATTATGGA
Found at i:26884426 original size:29 final size:29
Alignment explanation
Indices: 26884360--26884422 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
26884350 CATATTTTAA
26884360 GGTTTAGGGAGTATGGATATAGGGATTAT
1 GGTTTAGGGAGTATGGATATAGGGATTAT
* *
26884389 GGATTAGGGATTATGGAT-TAGGGATTAT
1 GGTTTAGGGAGTATGGATATAGGGATTAT
26884417 GGTTTA
1 GGTTTA
26884423 AGGGTTGGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (29 bp):
GGTTTAGGGAGTATGGATATAGGGATTAT
Found at i:26884449 original size:15 final size:15
Alignment explanation
Indices: 26884417--26884461 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
26884407 TAGGGATTAT
*
26884417 GGTTTAAGGGTT-GG
1 GGTTTAAGGTTTAGG
26884431 GGTTTAAGGTTTAGG
1 GGTTTAAGGTTTAGG
*
26884446 GGTTAAAGGTTTAGG
1 GGTTTAAGGTTTAGG
26884461 G
1 G
26884462 ATTAGACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.36
Consensus pattern (15 bp):
GGTTTAAGGTTTAGG
Found at i:26884502 original size:15 final size:15
Alignment explanation
Indices: 26884433--26884509 Score: 54
Period size: 15 Copynumber: 5.3 Consensus size: 15
26884423 AGGGTTGGGG
*
26884433 TTTAAGGTTTAGGG-
1 TTTAAAGTTTAGGGA
*
26884447 GTTAAAGGTTTAGGGA
1 TTTAAA-GTTTAGGGA
* **
26884463 -TTAGACATTAGGG-
1 TTTAAAGTTTAGGGA
*
26884476 GTTAAGAG-TTAGGGA
1 TTTAA-AGTTTAGGGA
26884491 TTTAAAGTTTAGGGA
1 TTTAAAGTTTAGGGA
26884506 TTTA
1 TTTA
26884510 GGGGCCGGGT
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
14 21 0.43
15 28 0.57
ACGTcount: A:0.30, C:0.01, G:0.32, T:0.36
Consensus pattern (15 bp):
TTTAAAGTTTAGGGA
Done.