Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 86 of 210
Found at i:29746888 original size:88 final size:88
Alignment explanation
Indices: 29746532--29746893 Score: 248
Period size: 88 Copynumber: 4.1 Consensus size: 88
29746522 CCAATAATTC
* * * *
29746532 TATCTCCCTGTGCAGCAGTGGAATAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAATAATGG
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATTTTATCTCCCTAAGCAGTAGTGG
* *
29746597 AGCAGATCGAAGATGGCAGATTT
66 AACAGATCGAAGATGACAGATTT
* * * * *** * * ** *
29746620 TACCTCCCTGTGGTTA-CAGTGGAGTACATTGAAGCCAATA-ATTCTATCTCCCTGTGCAGCAGT
1 TATCTCCCTG-GG-CAGCAGTGGAATAGATTGAAGATTACAGATTTTATCTCCCTAAGCAGTAGT
* * * *
29746683 GGAATAGATTGAAGATTACATATTT
64 GGAACAGATCGAAGATGACAGATTT
** * * * ** * **
29746708 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCT--GTGGTTACAG
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATTTTATCTCCCTAAGCAG-T--AG
** * * *** * *
29746771 TGGAGTATATTGAAGCCAATA-ATTC
63 TGGAACAGATCGAAGATGACAGATTT
*
29746796 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATTTTATCTCCCTAAGCAGTAGTGG
**
29746861 AACAGATCGAAGATGGTAGATTT
66 AACAGATCGAAGATGACAGATTT
29746884 TATCTCCCTG
1 TATCTCCCTG
29746894 TGGTTATAGT
Statistics
Matches: 198, Mismatches: 66, Indels: 20
0.70 0.23 0.07
Matches are distributed among these distances:
86 3 0.02
87 32 0.16
88 124 0.63
89 36 0.18
90 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (88 bp):
TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATTTTATCTCCCTAAGCAGTAGTGG
AACAGATCGAAGATGACAGATTT
Found at i:29748572 original size:12 final size:12
Alignment explanation
Indices: 29748555--29748579 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29748545 AATTATACAC
29748555 TAACGTATTGGG
1 TAACGTATTGGG
29748567 TAACGTATTGGG
1 TAACGTATTGGG
29748579 T
1 T
29748580 TGCAATTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.32, T:0.36
Consensus pattern (12 bp):
TAACGTATTGGG
Found at i:29748887 original size:18 final size:17
Alignment explanation
Indices: 29748864--29748897 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
29748854 GGTGCTAATC
29748864 CTTTTATATTTACATAAA
1 CTTTTATATTTA-ATAAA
29748882 CTTTTATATTTAATAA
1 CTTTTATATTTAATAA
29748898 TTTTAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (17 bp):
CTTTTATATTTAATAAA
Found at i:29749231 original size:15 final size:15
Alignment explanation
Indices: 29749213--29749243 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
29749203 TTATTACTCC
*
29749213 TTTTTGTTCATATTA
1 TTTTTGTTCACATTA
29749228 TTTTTGTTCACATTA
1 TTTTTGTTCACATTA
29749243 T
1 T
29749244 CATATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.10, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTTGTTCACATTA
Found at i:29749500 original size:109 final size:109
Alignment explanation
Indices: 29749322--29749581 Score: 412
Period size: 109 Copynumber: 2.4 Consensus size: 109
29749312 ATATTTAGCA
* * *
29749322 TTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCAACCAAATAA
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAA
*
29749387 CTTAATATTCTTTTAAAAATTTCAAAATAAGGCAATGTATTACG
66 CTTAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTATTACG
* **
29749431 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCATCCAAATGG
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAA
* * *
29749496 CTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCG
66 CTTAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTATTACG
*
29749540 TTTGGGAAATTCGAGAAAACATGCCCTAAGGTGTTGGGTGTC
1 TTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTC
29749582 NNNNNNNNNN
Statistics
Matches: 139, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
109 102 0.73
110 37 0.27
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (109 bp):
TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAA
CTTAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTATTACG
Found at i:29750976 original size:9 final size:9
Alignment explanation
Indices: 29750964--29751008 Score: 58
Period size: 8 Copynumber: 5.1 Consensus size: 9
29750954 TGTAAGTAAT
29750964 TTATTTAAA
1 TTATTTAAA
29750973 TTA-TTAAA
1 TTATTTAAA
*
29750981 ATATATTAAA
1 TTAT-TTAAA
29750991 TTATTTAAA
1 TTATTTAAA
29751000 -TATTTAAA
1 TTATTTAAA
29751008 T
1 T
29751009 ATTGCAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 15 0.48
9 8 0.26
10 8 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
TTATTTAAA
Found at i:29750991 original size:18 final size:17
Alignment explanation
Indices: 29750965--29751008 Score: 70
Period size: 18 Copynumber: 2.5 Consensus size: 17
29750955 GTAAGTAATT
29750965 TATTTAAATTATTAAAA
1 TATTTAAATTATTAAAA
*
29750982 TATATTAAATTATTTAAA
1 TAT-TTAAATTATTAAAA
29751000 TATTTAAAT
1 TATTTAAAT
29751009 ATTGCAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTTAAATTATTAAAA
Found at i:29751003 original size:8 final size:8
Alignment explanation
Indices: 29750965--29751011 Score: 58
Period size: 9 Copynumber: 5.5 Consensus size: 8
29750955 GTAAGTAATT
29750965 TATTTAAA
1 TATTTAAA
*
29750973 TTATTAAAA
1 -TATTTAAA
29750982 TATATTAAA
1 TAT-TTAAA
29750991 TTATTTAAA
1 -TATTTAAA
29751000 TATTTAAA
1 TATTTAAA
29751008 TATT
1 TATT
29751012 GCAATAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
8 15 0.44
9 16 0.47
10 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (8 bp):
TATTTAAA
Found at i:29757470 original size:21 final size:21
Alignment explanation
Indices: 29757446--29757508 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
29757436 AATATTTTTT
29757446 AATATTAAAAAGATATTATAA
1 AATATTAAAAAGATATTATAA
* *
29757467 AATATT-AAAATA-ATTACTAG
1 AATATTAAAAAGATATTA-TAA
29757487 AA-ATTATAAAAG-TATTATAA
1 AATATTA-AAAAGATATTATAA
29757507 AA
1 AA
29757509 ATTTTAGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
19 7 0.21
20 13 0.38
21 14 0.41
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (21 bp):
AATATTAAAAAGATATTATAA
Found at i:29757521 original size:30 final size:29
Alignment explanation
Indices: 29757460--29757532 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
29757450 TTAAAAAGAT
29757460 ATTATAAAATATTAAAATAATTACTAGAA
1 ATTATAAAATATTAAAATAATTACTAGAA
*
29757489 ATTATAAAAGTATTATAAA-AATT-TTAGAAA
1 ATTATAAAA-TATTA-AAATAATTACTAG-AA
*
29757519 ATTATAAAAAATTA
1 ATTATAAAATATTA
29757533 GAAACTTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 16 0.41
30 20 0.51
31 3 0.08
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (29 bp):
ATTATAAAATATTAAAATAATTACTAGAA
Found at i:29757524 original size:19 final size:19
Alignment explanation
Indices: 29757500--29757548 Score: 73
Period size: 18 Copynumber: 2.6 Consensus size: 19
29757490 TTATAAAAGT
29757500 ATTATAAAAATTTTAGAAA
1 ATTATAAAAATTTTAGAAA
*
29757519 ATTATAAAAA-ATTAGAAA
1 ATTATAAAAATTTTAGAAA
*
29757537 CTTATAAAAATT
1 ATTATAAAAATT
29757549 ATTTTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (19 bp):
ATTATAAAAATTTTAGAAA
Found at i:29758706 original size:20 final size:20
Alignment explanation
Indices: 29758676--29758713 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
29758666 AAGTGTGAAG
29758676 TATTATTGGATTGAATTGAGT
1 TATTATTGGATT-AATTGAGT
29758697 TATT-TTGGATTAATTGA
1 TATTATTGGATTAATTGA
29758714 TTGTGCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (20 bp):
TATTATTGGATTAATTGAGT
Found at i:29759627 original size:24 final size:24
Alignment explanation
Indices: 29759590--29759641 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
29759580 TGGAGGTAGG
29759590 ATCTATGACCGCATCTATATCTGA
1 ATCTATGACCGCATCTATATCTGA
* * * *
29759614 ATCTATGTCTGCATTTGTATCTGA
1 ATCTATGACCGCATCTATATCTGA
29759638 ATCT
1 ATCT
29759642 GAATATGCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.40
Consensus pattern (24 bp):
ATCTATGACCGCATCTATATCTGA
Found at i:29759650 original size:24 final size:24
Alignment explanation
Indices: 29759623--29759668 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
29759613 AATCTATGTC
* *
29759623 TGCATTTGTATCTGAATCTGAATA
1 TGCATCTGTATCTGAACCTGAATA
*
29759647 TGCATCTGTATTTGAACCTGAA
1 TGCATCTGTATCTGAACCTGAA
29759669 AAATACATCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (24 bp):
TGCATCTGTATCTGAACCTGAATA
Found at i:29762206 original size:1 final size:1
Alignment explanation
Indices: 29762156--29762199 Score: 88
Period size: 1 Copynumber: 44.0 Consensus size: 1
29762146 AAAATTGATG
29762156 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
29762200 GCTTTTTGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:29770592 original size:2 final size:2
Alignment explanation
Indices: 29770585--29770612 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
29770575 AATTGTATGC
29770585 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29770613 GCATACAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29774006 original size:32 final size:32
Alignment explanation
Indices: 29773953--29774031 Score: 113
Period size: 32 Copynumber: 2.4 Consensus size: 32
29773943 CCACTTGCCC
* *
29773953 GTGTAGGCCCACACACTCTACTTGGCCTAGCCT
1 GTGT-GGCCCACACGCCCTACTTGGCCTAGCCT
*
29773986 GTGTGGCCCACACGCCCTACTTGGCTTAGCCT
1 GTGTGGCCCACACGCCCTACTTGGCCTAGCCT
*
29774018 GTGTGGCCTACACG
1 GTGTGGCCCACACG
29774032 GCCACACCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 38 0.90
33 4 0.10
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.24
Consensus pattern (32 bp):
GTGTGGCCCACACGCCCTACTTGGCCTAGCCT
Found at i:29785885 original size:20 final size:20
Alignment explanation
Indices: 29785835--29785874 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
29785825 CACATTGGTG
* *
29785835 AATTATGTAGCGGCTGAAAC
1 AATTTTGTAGCGGCCGAAAC
29785855 AATTTTGTAGCGGCCGAAAC
1 AATTTTGTAGCGGCCGAAAC
29785875 GTTTTGTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (20 bp):
AATTTTGTAGCGGCCGAAAC
Found at i:29790353 original size:18 final size:17
Alignment explanation
Indices: 29790330--29790371 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
29790320 AGTAGTATAG
29790330 GTTCGC-TAGATACCAATA
1 GTTCGCATA-ATACCAA-A
*
29790348 GTTCGCATAATACCTAA
1 GTTCGCATAATACCAAA
29790365 GTTCGCA
1 GTTCGCA
29790372 ACAGGCAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 12 0.55
19 2 0.09
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (17 bp):
GTTCGCATAATACCAAA
Found at i:29791985 original size:19 final size:19
Alignment explanation
Indices: 29791926--29791988 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 19
29791916 TTTATGATTT
29791926 TTTTAAAAATGTAAATTTTGATA
1 TTTTAAAAAT-T--ATTTTGA-A
* *
29791949 TTTTTATAAA-TATATTGAA
1 -TTTTAAAAATTATTTTGAA
29791968 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTTTGAA
29791987 TT
1 TT
29791989 ATTTTTGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
18 8 0.24
19 11 0.32
20 6 0.18
22 1 0.03
24 8 0.24
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.52
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:29794422 original size:4 final size:4
Alignment explanation
Indices: 29794415--29794441 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
29794405 AAATAAATAA
29794415 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
29794442 AATAAACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:29798436 original size:12 final size:12
Alignment explanation
Indices: 29798403--29798437 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
29798393 TGCTCATCCA
29798403 CCGCATCCAGCG
1 CCGCATCCAGCG
* *
29798415 CCACAACCAGCG
1 CCGCATCCAGCG
29798427 CCGCATCCAGC
1 CCGCATCCAGC
29798438 TGCACAGGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.51, G:0.20, T:0.06
Consensus pattern (12 bp):
CCGCATCCAGCG
Found at i:29799061 original size:13 final size:14
Alignment explanation
Indices: 29799043--29799071 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
29799033 CTAACCCCTC
29799043 AAAA-TTTTTATTT
1 AAAATTTTTTATTT
29799056 AAAATTTTTTATTT
1 AAAATTTTTTATTT
29799070 AA
1 AA
29799072 GTCATCTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AAAATTTTTTATTT
Found at i:29801085 original size:18 final size:17
Alignment explanation
Indices: 29801059--29801100 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
29801049 TCATATTCCT
*
29801059 TTTTA-TATAGTTTTATA
1 TTTTATTATAATTTT-TA
29801076 TTTTATTATAATTTTTA
1 TTTTATTATAATTTTTA
29801093 TTATTATT
1 TT-TTATT
29801101 GTCATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTTATTATAATTTTTA
Found at i:29812630 original size:44 final size:44
Alignment explanation
Indices: 29812562--29812997 Score: 480
Period size: 44 Copynumber: 9.9 Consensus size: 44
29812552 TTATCGTGGA
* * * **
29812562 AAATTTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGCCAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAC
* *
29812606 ATATCTTATCTCCCTGAAGTTGCAGTGGAG-ATGATTGAAGTTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCA-GATTGAAGTTAC
* * * * **
29812650 AAATTTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAAATAGC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTA-C
* * *
29812695 AAATCTTATCTCTCTAAAGTTACAGTGGAACAGATTGAAGTTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAC
* * * * *
29812739 AAATCTTATCTTCCTAAAGTTGAAATGGAGAAAATTGAAGTTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAC
* * *
29812783 AAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGTTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAC
29812827 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAC
* * * ***
29812871 AAATCTCATCTCCTTAAAGTTGCAGTGGAGTAGATTGAAGACGC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAC
* * * *
29812915 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTAAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAC
* * * * *
29812959 AAATC-TAGCCTCTCTAAAGTTGTAATGGAGTAGATTGAA
1 AAATCTTA-TCTCCCTAAAGTTGCAGTGGAGCAGATTGAA
29812998 CAACAAATTC
Statistics
Matches: 329, Mismatches: 59, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
43 3 0.01
44 290 0.88
45 36 0.11
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (44 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAC
Found at i:29814599 original size:17 final size:16
Alignment explanation
Indices: 29814572--29814603 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
29814562 TTACAAACTG
29814572 TTTTATTTATTTATTA
1 TTTTATTTATTTATTA
29814588 TTTTATTTTATTTATT
1 TTTTA-TTTATTTATT
29814604 TAACTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTATTTATTTATTA
Found at i:29814721 original size:3 final size:3
Alignment explanation
Indices: 29814666--29814706 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
29814656 TTATATTTTG
* * *
29814666 TTA TCA TTA TTA TTA TTG TTA TTA TTA TCA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
29814707 TTTTCCTTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:29817222 original size:41 final size:41
Alignment explanation
Indices: 29817174--29817284 Score: 222
Period size: 41 Copynumber: 2.7 Consensus size: 41
29817164 AATTTAACTG
29817174 ATGAGACACTGGGTGTCAATTTACTACTTTGGATTTATTCA
1 ATGAGACACTGGGTGTCAATTTACTACTTTGGATTTATTCA
29817215 ATGAGACACTGGGTGTCAATTTACTACTTTGGATTTATTCA
1 ATGAGACACTGGGTGTCAATTTACTACTTTGGATTTATTCA
29817256 ATGAGACACTGGGTGTCAATTTACTACTT
1 ATGAGACACTGGGTGTCAATTTACTACTT
29817285 CAAATTATTC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (41 bp):
ATGAGACACTGGGTGTCAATTTACTACTTTGGATTTATTCA
Found at i:29822946 original size:4 final size:4
Alignment explanation
Indices: 29822939--29822980 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
29822929 TATTAAATTA
* * *
29822939 ATAT ATAT ATAT ATAT ATAT ATAT ATGT ATGT ATAT GTAT AT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT AT
29822981 GTATTAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (4 bp):
ATAT
Found at i:29822954 original size:10 final size:10
Alignment explanation
Indices: 29822939--29822980 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
29822929 TATTAAATTA
29822939 ATATATATAT
1 ATATATATAT
29822949 ATATATATAT
1 ATATATATAT
*
29822959 ATATATGTAT
1 ATATATATAT
* *
29822969 GTATATGTAT
1 ATATATATAT
29822979 AT
1 AT
29822981 GTATTAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (10 bp):
ATATATATAT
Found at i:29822984 original size:6 final size:6
Alignment explanation
Indices: 29822939--29822980 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
29822929 TATTAAATTA
* * *
29822939 ATATAT ATATAT ATATAT ATATAT ATGTAT GTATAT GTATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
29822981 GTATTAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (6 bp):
ATATAT
Found at i:29826651 original size:21 final size:20
Alignment explanation
Indices: 29826624--29826677 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
29826614 GAAAGCCAAT
*
29826624 GAAAAGAGAAAGGAAGGAAA
1 GAAAAGAGAAAGGAAAGAAA
*
29826644 GAAAAAGAAAAAGGGAAAGAAA
1 G-AAAAGAGAAA-GGAAAGAAA
*
29826666 GAAAGGAGAAAG
1 GAAAAGAGAAAG
29826678 ACAAGACTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 17 0.61
22 9 0.32
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (20 bp):
GAAAAGAGAAAGGAAAGAAA
Found at i:29826665 original size:22 final size:21
Alignment explanation
Indices: 29826625--29826669 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
29826615 AAAGCCAATG
* *
29826625 AAAAGAGAAAGGAAGGAAAGA
1 AAAAGAAAAAGGAAAGAAAGA
29826646 AAAAGAAAAAGGGAAAGAAAGA
1 AAAAGAAAAA-GGAAAGAAAGA
29826668 AA
1 AA
29826670 GGAGAAAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (21 bp):
AAAAGAAAAAGGAAAGAAAGA
Found at i:29829591 original size:24 final size:24
Alignment explanation
Indices: 29829559--29829606 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
29829549 CACCAGAATG
29829559 GCCCAATAGCAATTGGGGTTTATT
1 GCCCAATAGCAATTGGGGTTTATT
29829583 GCCCAATAGCAATTGGGGTTTATT
1 GCCCAATAGCAATTGGGGTTTATT
29829607 AAACAGTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
GCCCAATAGCAATTGGGGTTTATT
Found at i:29830465 original size:18 final size:20
Alignment explanation
Indices: 29830410--29830468 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
29830400 ACCTTTACAC
29830410 CACATTGTGGATAAACCACT
1 CACATTGTGGATAAACCACT
* *
29830430 CATCATTGTGTATGAACCACT
1 CA-CATTGTGGATAAACCACT
29830451 C-C-TTGTGGATAAACCACT
1 CACATTGTGGATAAACCACT
29830469 AGTAAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
18 14 0.41
19 1 0.03
20 2 0.06
21 17 0.50
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (20 bp):
CACATTGTGGATAAACCACT
Found at i:29834777 original size:46 final size:46
Alignment explanation
Indices: 29834725--29834818 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
29834715 CCATGGAAAA
* *
29834725 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAG
*
29834771 TTGTGAAAAGTAGGTATGGTATTTCAATGAAGGAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAG
29834817 TT
1 TT
29834819 ATAGCATTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.30
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAG
Found at i:29839658 original size:21 final size:18
Alignment explanation
Indices: 29839615--29839663 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 18
29839605 TTTTAAATTC
*
29839615 TAAAAATGAATAAAATAT
1 TAAAAATAAATAAAATAT
29839633 TAAAAATAATATAAAATCATT
1 TAAAAATAA-ATAAAAT-A-T
29839654 TAAAAATAAA
1 TAAAAATAAA
29839664 AATAGAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 8 0.30
19 7 0.26
20 2 0.07
21 10 0.37
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
TAAAAATAAATAAAATAT
Found at i:29840113 original size:48 final size:48
Alignment explanation
Indices: 29840061--29840166 Score: 140
Period size: 48 Copynumber: 2.2 Consensus size: 48
29840051 GGAGGCGTTT
** * * * * *
29840061 GTGGGTTCACAATAGGTTGTGATGGTGGTGGTAGAATCGATGGTGTTG
1 GTGGGTTCACAATAGGAAGCGATAGAGGTGGTAGAACCGATGGTGTTA
*
29840109 GTGGGTTCACAATTGGAAGCGATAGAGGTGGTAGAACCGATGGTGTTA
1 GTGGGTTCACAATAGGAAGCGATAGAGGTGGTAGAACCGATGGTGTTA
29840157 GTGGGTTCAC
1 GTGGGTTCAC
29840167 TATTGCTGGA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.22, C:0.09, G:0.40, T:0.29
Consensus pattern (48 bp):
GTGGGTTCACAATAGGAAGCGATAGAGGTGGTAGAACCGATGGTGTTA
Found at i:29847414 original size:6 final size:6
Alignment explanation
Indices: 29847405--29847443 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
29847395 GCCTCCGCCT
29847405 CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CAT
1 CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CAT
29847444 ACTCTTCTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.33, C:0.49, G:0.00, T:0.18
Consensus pattern (6 bp):
CATCAC
Found at i:29850069 original size:126 final size:125
Alignment explanation
Indices: 29849815--29850256 Score: 636
Period size: 126 Copynumber: 3.5 Consensus size: 125
29849805 GATAAAATCA
* * * * * * * * *
29849815 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCACGTGAACGCGCTTTTGCTACAGT
1 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
29849880 AGGTCCTAAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTAAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
29849940 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCTCGTGGACGCGCTTTTGCTACAGT
* ** * * *
29850005 TGGTCCTGGCAGAAATAATTTTGAGTTGACGTTTTTAAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCT-AAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
29850066 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
29850131 AGGTCCTAAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGC
66 AGGTCCTAAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTTTAAAA-AACGCTTC
***
29850192 AAGC-AGCATGCTATT-TGAGAAGAATTTGTGAAATTGTGCCCTCGTGGACGCGCTTTTGCTACA
1 AAGCAAG-ATGCT-TTATGAGAAGAATTTGTGAAATCACGCCCTCGTGGACGCGCTTTTGCTACA
29850255 GT
64 GT
29850257 TGGGGGGGGC
Statistics
Matches: 285, Mismatches: 28, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
125 103 0.36
126 180 0.63
127 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (125 bp):
AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCTCGTGGACGCGCTTTTGCTACAGT
AGGTCCTAAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
Found at i:29860029 original size:21 final size:21
Alignment explanation
Indices: 29860004--29860045 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
29859994 CTTTTGCGTA
*
29860004 AAATATGAATTGGATTGAATT
1 AAATATGAATTGGATTAAATT
*
29860025 AAATATGAATTGTATTAAATT
1 AAATATGAATTGGATTAAATT
29860046 GAGTTAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.40
Consensus pattern (21 bp):
AAATATGAATTGGATTAAATT
Found at i:29865848 original size:25 final size:25
Alignment explanation
Indices: 29865762--29865855 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
29865752 AGCAATAAAC
*
29865762 GGGAAGCTCCT-TCGAGCTGAATAAT
1 GGGAAGCTCATAT-GAGCTGAATAAT
* * *
29865787 GGGAAGCTCATGTGAGCTAAATAACA
1 GGGAAGCTCATATGAGCTGAATAA-T
* *
29865813 GGG-AGCTCATATGAGCTGAGTATT
1 GGGAAGCTCATATGAGCTGAATAAT
*
29865837 GGGAAGCTCATAAGAGCTG
1 GGGAAGCTCATATGAGCTG
29865856 TGGTGTGTCC
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
24 3 0.05
25 50 0.88
26 4 0.07
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (25 bp):
GGGAAGCTCATATGAGCTGAATAAT
Found at i:29867236 original size:32 final size:32
Alignment explanation
Indices: 29867195--29867259 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
29867185 ACCATTGTTG
29867195 ACCCACTAAGGGAATGACATGTGTACAGGGGT
1 ACCCACTAAGGGAATGACATGTGTACAGGGGT
29867227 ACCCACTAAGGGAATGACATGTGTACAGGGGT
1 ACCCACTAAGGGAATGACATGTGTACAGGGGT
29867259 A
1 A
29867260 GGGAAAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.18
Consensus pattern (32 bp):
ACCCACTAAGGGAATGACATGTGTACAGGGGT
Found at i:29868900 original size:116 final size:117
Alignment explanation
Indices: 29868774--29869010 Score: 467
Period size: 116 Copynumber: 2.0 Consensus size: 117
29868764 ATCAAATTGA
29868774 AAAAAATGGAAAGTTTTCTTTCTATTTATAATGGTGGCGGCGTTGGAATGATGAAGCATAGAGAG
1 AAAAAATGGAAAGTTTTCTTTCTATTTATAATGGTGGCGGCGTTGGAATGATGAAGCATAGAGAG
29868839 AATTCTTCATGTTTCCATAAAAATATCTTTATTAAATTAATT-AAAATTATT
66 AATTCTTCATGTTTCCATAAAAATATCTTTATTAAATTAATTAAAAATTATT
29868890 AAAAAATGGAAAGTTTTCTTTCTATTTATAATGGTGGCGGCGTTGGAATGATGAAGCATAGAGAG
1 AAAAAATGGAAAGTTTTCTTTCTATTTATAATGGTGGCGGCGTTGGAATGATGAAGCATAGAGAG
29868955 AATTCTTCATGTTTCCATAAAAATATCTTTATTAAATTAATTAAAAATTATT
66 AATTCTTCATGTTTCCATAAAAATATCTTTATTAAATTAATTAAAAATTATT
29869007 AAAA
1 AAAA
29869011 TATAATATAA
Statistics
Matches: 120, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
116 107 0.89
117 13 0.11
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.37
Consensus pattern (117 bp):
AAAAAATGGAAAGTTTTCTTTCTATTTATAATGGTGGCGGCGTTGGAATGATGAAGCATAGAGAG
AATTCTTCATGTTTCCATAAAAATATCTTTATTAAATTAATTAAAAATTATT
Found at i:29869007 original size:19 final size:22
Alignment explanation
Indices: 29868983--29869029 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
29868973 AAAAATATCT
29868983 TTATT-AAAT-TAAT-TAAAAA
1 TTATTAAAATATAATATAAAAA
29869002 TTATTAAAATATAATATAAAAA
1 TTATTAAAATATAATATAAAAA
29869024 TCTATT
1 T-TATT
29869030 TTCATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.21
20 4 0.17
21 4 0.17
22 7 0.29
23 4 0.17
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TTATTAAAATATAATATAAAAA
Found at i:29880696 original size:20 final size:21
Alignment explanation
Indices: 29880671--29880709 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
29880661 TCCCCATGTG
29880671 GCCCACAC-AGCTTGACCCAA
1 GCCCACACAAGCTTGACCCAA
*
29880691 GCCCACCCAAGCTTGACCC
1 GCCCACACAAGCTTGACCC
29880710 TCGGAGTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.26, C:0.49, G:0.15, T:0.10
Consensus pattern (21 bp):
GCCCACACAAGCTTGACCCAA
Found at i:29892963 original size:34 final size:34
Alignment explanation
Indices: 29892918--29892995 Score: 147
Period size: 34 Copynumber: 2.3 Consensus size: 34
29892908 TTCTTCCAGC
*
29892918 ATGCAATATCTAAATGCAAAATCATTTTTTACGG
1 ATGCAAAATCTAAATGCAAAATCATTTTTTACGG
29892952 ATGCAAAATCTAAATGCAAAATCATTTTTTACGG
1 ATGCAAAATCTAAATGCAAAATCATTTTTTACGG
29892986 ATGCAAAATC
1 ATGCAAAATC
29892996 ATTTTTTACG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (34 bp):
ATGCAAAATCTAAATGCAAAATCATTTTTTACGG
Found at i:29892991 original size:21 final size:21
Alignment explanation
Indices: 29892965--29893008 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
29892955 CAAAATCTAA
29892965 ATGCAAAATCATTTTTTACGG
1 ATGCAAAATCATTTTTTACGG
29892986 ATGCAAAATCATTTTTTACGG
1 ATGCAAAATCATTTTTTACGG
29893007 AT
1 AT
29893009 ACATAGCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (21 bp):
ATGCAAAATCATTTTTTACGG
Found at i:29894957 original size:21 final size:19
Alignment explanation
Indices: 29894913--29895003 Score: 83
Period size: 21 Copynumber: 4.5 Consensus size: 19
29894903 CAATATACCA
* *
29894913 TAAACCTTAAATCATAAATCC
1 TAAACCCTAAA-CCTAAA-CC
*
29894934 TAAACCCCAAACCTAAAACTC
1 TAAACCCTAAACCT-AAAC-C
*
29894955 TAAACTCTAAACCGTAAACCC
1 TAAACCCTAAACC-TAAA-CC
*
29894976 TAAACCGTAAACCTAAACC
1 TAAACCCTAAACCTAAACC
29894995 TAAACCCTA
1 TAAACCCTA
29895004 TTTTTTGGAA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
19 10 0.17
20 7 0.12
21 39 0.67
22 2 0.03
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.20
Consensus pattern (19 bp):
TAAACCCTAAACCTAAACC
Found at i:29895003 original size:7 final size:7
Alignment explanation
Indices: 29894913--29895003 Score: 71
Period size: 7 Copynumber: 13.3 Consensus size: 7
29894903 CAATATACCA
*
29894913 TAAACCT
1 TAAACCC
* *
29894920 TAAATCA
1 TAAACCC
*
29894927 TAAATCC
1 TAAACCC
29894934 TAAACCC
1 TAAACCC
*
29894941 CAAA-CC
1 TAAACCC
*
29894947 TAAAACTC
1 T-AAACCC
*
29894955 TAAACTC
1 TAAACCC
*
29894962 TAAACCG
1 TAAACCC
29894969 TAAACCC
1 TAAACCC
*
29894976 TAAACCG
1 TAAACCC
29894983 TAAA-CC
1 TAAACCC
29894989 TAAA-CC
1 TAAACCC
29894995 TAAACCC
1 TAAACCC
29895002 TA
1 TA
29895004 TTTTTTGGAA
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
6 13 0.19
7 54 0.78
8 2 0.03
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:29895168 original size:20 final size:21
Alignment explanation
Indices: 29895131--29895179 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
29895121 CTTCAATTTT
29895131 CAAACT-AAACCCTAAAACCC
1 CAAACTCAAACCCTAAAACCC
* *
29895151 TAAACTCAAA-CCTTAAACCC
1 CAAACTCAAACCCTAAAACCC
29895171 CAAACTCAA
1 CAAACTCAA
29895180 TCTCTAACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.49, C:0.37, G:0.00, T:0.14
Consensus pattern (21 bp):
CAAACTCAAACCCTAAAACCC
Found at i:29895684 original size:38 final size:39
Alignment explanation
Indices: 29895629--29895702 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 39
29895619 TAAACCCCTG
29895629 AGCATTAGCGGCACTTTCCGA-AAAACGCCGCTAAAGGA
1 AGCATTAGCGGCACTTTCCGAGAAAACGCCGCTAAAGGA
* **
29895667 AGCATTAGCGGCGCTTTCTTAGAAAACGCCGCTAAA
1 AGCATTAGCGGCACTTTCCGAGAAAACGCCGCTAAA
29895703 TCCACTGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 18 0.56
39 14 0.44
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (39 bp):
AGCATTAGCGGCACTTTCCGAGAAAACGCCGCTAAAGGA
Found at i:29895998 original size:72 final size:71
Alignment explanation
Indices: 29895908--29896105 Score: 213
Period size: 72 Copynumber: 2.8 Consensus size: 71
29895898 AAAGCTGAGA
* * *
29895908 AAACGACACCGTTTGGCTTAGGTTTTTTAGCGGCGCTTCCCCAAAAACACCGCTAAAT-CCCAAA
1 AAACGGCACCGTTTGGCTTAGG-TTTTTAGCGGCGCTTACCCAAAAACGCCGCTAAATCCCCAAA
29895972 AACTACGG
65 AAC-ACGG
* * ** *
29895980 AAACGGCACCGTTTGGCTTAGGATTATTAGTGGCGCTTGA-TTAAAAACGTCGCTAAATCCCCAA
1 AAACGGCACCGTTTGGCTTAGG-TTTTTAGCGGCGCTT-ACCCAAAAACGCCGCTAAATCCCCAA
29896044 AAACACGG
64 AAACACGG
*** * * *
29896052 AAACGGTGTCGTTGGGCTTTGGTTTTT-GCGGCGCTTACCGAAAAACGCCGCTAA
1 AAACGGCACCGTTTGGCTTAGGTTTTTAGCGGCGCTTACCCAAAAACGCCGCTAA
29896106 TTCTTATTTT
Statistics
Matches: 104, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
69 1 0.01
70 21 0.20
71 4 0.04
72 69 0.66
73 9 0.09
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (71 bp):
AAACGGCACCGTTTGGCTTAGGTTTTTAGCGGCGCTTACCCAAAAACGCCGCTAAATCCCCAAAA
ACACGG
Found at i:29898144 original size:17 final size:18
Alignment explanation
Indices: 29898104--29898144 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
29898094 TTTTTTTTAT
*
29898104 AAAT-ATATTTATTATGT
1 AAATGATATTTATTATGG
*
29898121 AATTGATATTT-TTATGG
1 AAATGATATTTATTATGG
29898138 AAATGAT
1 AAATGAT
29898145 GAATGGTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (18 bp):
AAATGATATTTATTATGG
Found at i:29907501 original size:17 final size:17
Alignment explanation
Indices: 29907481--29907515 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
29907471 AAGTTTAGAG
29907481 AAAATAAACAA-AAATAA
1 AAAATAAA-AATAAATAA
29907498 AAAATAAAAATAAATAA
1 AAAATAAAAATAAATAA
29907515 A
1 A
29907516 GGGTAAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAATAAAAATAAATAA
Found at i:29913879 original size:20 final size:21
Alignment explanation
Indices: 29913858--29913907 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 21
29913848 TTTTGGAAAT
29913858 TTTAATTTTAT-TTTTTAT-A
1 TTTAATTTTATATTTTTATGA
29913877 TTT-ATATTTATATTTTTATGA
1 TTTAAT-TTTATATTTTTATGA
29913898 GTTTAATTTT
1 -TTTAATTTT
29913908 TAAAATTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.08
19 8 0.31
20 7 0.27
21 1 0.04
22 6 0.23
23 2 0.08
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (21 bp):
TTTAATTTTATATTTTTATGA
Found at i:29914978 original size:19 final size:19
Alignment explanation
Indices: 29914942--29914997 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 19
29914932 TTATGGTGTT
* *
29914942 ATTTT-TAAAATATTTAAA
1 ATTTTATAAAAAATATAAA
29914960 ATTTTATAAAAAATATAAA
1 ATTTTATAAAAAATATAAA
** *
29914979 AACTTATAAATAATATAAA
1 ATTTTATAAAAAATATAAA
29914998 TTTCAAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 5 0.16
19 27 0.84
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
ATTTTATAAAAAATATAAA
Found at i:29916504 original size:18 final size:20
Alignment explanation
Indices: 29916481--29916524 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
29916471 TAAGTGCTAA
*
29916481 ATTAAAA-AAAT-ATTAATT
1 ATTAAAACAAATGATTAAAT
*
29916499 ATTAAAACAATTGATTAAAT
1 ATTAAAACAAATGATTAAAT
29916519 ATTAAA
1 ATTAAA
29916525 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 3 0.14
20 12 0.55
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
ATTAAAACAAATGATTAAAT
Found at i:29920333 original size:21 final size:21
Alignment explanation
Indices: 29920309--29920523 Score: 204
Period size: 21 Copynumber: 10.3 Consensus size: 21
29920299 ATGCTTTACT
*
29920309 TTCTGTTCAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTATGAGC
* *
29920330 TTCTGTTTAACTCTTATGAG-
1 TTCTGTTCAGCTCTTATGAGC
* *
29920350 TTTTCGTTTAGCTCTT-TCGAGC
1 TTCT-GTTCAGCTCTTAT-GAGC
* * * *
29920372 TTCTATTCAACTCATATGAGT
1 TTCTGTTCAGCTCTTATGAGC
29920393 TTCTGTTCAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTATGAGC
* * * *
29920414 TTCTGTTCAACCCTTATGGGT
1 TTCTGTTCAGCTCTTATGAGC
*
29920435 TTCTGTTTAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTATGAGC
* * * *
29920456 TTTTGTTTAGCTCTCATAAGC
1 TTCTGTTCAGCTCTTATGAGC
*
29920477 TTCTGTTCAGCTCTTATGAGT
1 TTCTGTTCAGCTCTTATGAGC
*
29920498 TTCTGTTCAGCT-TT-CGAGC
1 TTCTGTTCAGCTCTTATGAGC
29920517 TTCTGTT
1 TTCTGTT
29920524 AATGATGTAC
Statistics
Matches: 156, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
19 10 0.06
20 6 0.04
21 136 0.87
22 4 0.03
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTATGAGC
Found at i:29920364 original size:42 final size:42
Alignment explanation
Indices: 29920308--29920506 Score: 231
Period size: 42 Copynumber: 4.7 Consensus size: 42
29920298 CATGCTTTAC
* *
29920308 TTTCTGTTCAGCTCTTACGAGCTTCTGTTTAACTCTTATGAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACTCTTATGAG
* * *
29920350 TTT-TCGTTTAGCTCTT-TCGAGCTTCTATTCAACTCATATGAG
1 TTTCT-GTTCAGCTCTTAT-GAGCTTCTGTTCAACTCTTATGAG
* *
29920392 TTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACTCTTATGAG
* * * * * *
29920434 TTTCTGTTTAGCTCTTATGAGCTTTTGTTTAGCTCTCATAAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACTCTTATGAG
* *
29920476 CTTCTGTTCAGCTCTTATGAGTTTCTGTTCA
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTCA
29920507 GCTTTCGAGC
Statistics
Matches: 130, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 127 0.98
43 2 0.02
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.46
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACTCTTATGAG
Found at i:29922908 original size:21 final size:21
Alignment explanation
Indices: 29922883--29922925 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
29922873 CAAATTTGAC
* *
29922883 TCAATTTAATACAATTTATAT
1 TCAATTCAATACAATTCATAT
*
29922904 TCAATTCAATCCAATTCATAT
1 TCAATTCAATACAATTCATAT
29922925 T
1 T
29922926 TTAGGCAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (21 bp):
TCAATTCAATACAATTCATAT
Found at i:29929514 original size:30 final size:27
Alignment explanation
Indices: 29929442--29929514 Score: 74
Period size: 32 Copynumber: 2.5 Consensus size: 27
29929432 ATGTCATTAA
* *
29929442 AATATAATTAAATAAAAAATTTGTATT
1 AATATAAATAAATAAAAAATTTATATT
29929469 AATATTAATATTAAATAAAAACAATTTATATT
1 AATA-TAA-A-TAAAT-AAAA-AATTTATATT
29929501 AATATCAAATAAAT
1 AATAT-AAATAAAT
29929515 TTTTTTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
27 4 0.11
28 3 0.08
30 10 0.26
31 6 0.16
32 15 0.39
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (27 bp):
AATATAAATAAATAAAAAATTTATATT
Found at i:29932494 original size:19 final size:20
Alignment explanation
Indices: 29932459--29932508 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
29932449 TTGTAAATCA
29932459 TAAT-CATGAAATAATTACT
1 TAATACATGAAATAATTACT
*
29932478 TAATACATGAAA-CATTACT
1 TAATACATGAAATAATTACT
29932497 T-ATAACATGAAA
1 TAAT-ACATGAAA
29932509 ATTTTTCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 2 0.07
19 19 0.68
20 7 0.25
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (20 bp):
TAATACATGAAATAATTACT
Found at i:29946290 original size:22 final size:23
Alignment explanation
Indices: 29946249--29946302 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 23
29946239 TTAGAAAACT
29946249 ATAAAAA-TTAAAATTAAAATAA
1 ATAAAAATTTAAAATTAAAATAA
29946271 ATAAAAATTTCAAAA-T-AAATAA
1 ATAAAAATTT-AAAATTAAAATAA
29946293 AGTGAAAAAT
1 A-T-AAAAAT
29946303 GAGGGAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 14 0.50
23 4 0.14
24 10 0.36
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.26
Consensus pattern (23 bp):
ATAAAAATTTAAAATTAAAATAA
Found at i:29957528 original size:10 final size:10
Alignment explanation
Indices: 29957513--29957543 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
29957503 TTAAAACTTG
29957513 ACTATTTGAA
1 ACTATTTGAA
29957523 ACTATTTG-A
1 ACTATTTGAA
29957532 ACTATTTGAA
1 ACTATTTGAA
29957542 AC
1 AC
29957544 ACCCCATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (10 bp):
ACTATTTGAA
Found at i:29964313 original size:25 final size:23
Alignment explanation
Indices: 29964278--29964324 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
29964268 CAAAATCAAA
*
29964278 TGTTAATCTTTATTACTCAAATG
1 TGTTAATCTTTATTACCCAAATG
*
29964301 TGTTCAATCCTTTCTTACCCAAAT
1 TGTT-AAT-CTTTATTACCCAAAT
29964325 AAACTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 3 0.15
25 13 0.65
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.45
Consensus pattern (23 bp):
TGTTAATCTTTATTACCCAAATG
Found at i:29968084 original size:21 final size:21
Alignment explanation
Indices: 29968058--29968103 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
29968048 AACCAACAAC
29968058 AAAATAACAACAAAACAGTAA
1 AAAATAACAACAAAACAGTAA
* *
29968079 AAAATAACAAGAAAATAGTAA
1 AAAATAACAACAAAACAGTAA
29968100 AAAA
1 AAAA
29968104 AGGTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.74, C:0.09, G:0.07, T:0.11
Consensus pattern (21 bp):
AAAATAACAACAAAACAGTAA
Found at i:29969458 original size:19 final size:20
Alignment explanation
Indices: 29969395--29969466 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
29969385 GAAATTACAA
29969395 AAAAATTCAAAATAATTT-T
1 AAAAATTCAAAATAATTTAT
* *
29969414 CAAATATTCAAAATAATTTTT
1 -AAAAATTCAAAATAATTTAT
*
29969435 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTTAT
*
29969454 AAAAATTCTAAAT
1 AAAAATTCAAAAT
29969467 TTTTACATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.36
20 28 0.62
21 1 0.02
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTAT
Found at i:29982081 original size:16 final size:15
Alignment explanation
Indices: 29982053--29982109 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 15
29982043 TTTTTAAATA
29982053 AATAAATTTTATTTT
1 AATAAATTTTATTTT
29982068 AATAAATTTATATTTT
1 AATAAATTT-TATTTT
*
29982084 AAATTAAAATTTATTCTT
1 -AA-TAAATTTTATT-TT
*
29982102 AATTAATT
1 AATAAATT
29982110 AAAAAATCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
15 9 0.26
16 10 0.29
17 8 0.23
18 8 0.23
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
AATAAATTTTATTTT
Found at i:29982105 original size:17 final size:16
Alignment explanation
Indices: 29982055--29982107 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
29982045 TTTAAATAAA
*
29982055 TAAATTTTATTTTAA-
1 TAAAATTTATTTTAAT
*
29982070 TAAATTTATATTTTAAAT
1 TAAAATT-TATTTT-AAT
29982088 TAAAATTTATTCTTAAT
1 TAAAATTTATT-TTAAT
29982105 TAA
1 TAA
29982108 TTAAAAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 7 0.21
16 6 0.18
17 12 0.36
18 8 0.24
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
TAAAATTTATTTTAAT
Found at i:29983864 original size:16 final size:16
Alignment explanation
Indices: 29983815--29983857 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
29983805 GAGTGGCAAA
*
29983815 CTAGTGGGGTGGCGAG
1 CTAGCGGGGTGGCGAG
29983831 CTAGCGGGGTGGCGAG
1 CTAGCGGGGTGGCGAG
29983847 CTAGCGGGGTG
1 CTAGCGGGGTG
29983858 TCAAGCTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.12, C:0.16, G:0.56, T:0.16
Consensus pattern (16 bp):
CTAGCGGGGTGGCGAG
Found at i:29985437 original size:106 final size:106
Alignment explanation
Indices: 29985159--29985439 Score: 375
Period size: 106 Copynumber: 2.7 Consensus size: 106
29985149 ACGCGGGTAA
* * * * * * * * *
29985159 CTCCACCACACTAGATAGCTCAATAGAGTGATAACTACACCACACTCAA-ACACCGTAATGTAAA
1 CTCCACCACACCAAATGGCTCAAAAGAGAGTTAACTACACCACAC-CAAGGCACCGTAGTGCAAA
*
29985223 GCCCGTAGGCACAAATATCCTATCATGTAATATATTCCATCC
65 GCTCGTAGGCACAAATATCCTATCATGTAATATATTCCATCC
* * * *
29985265 CTCCACTACACCAAATGGCTCAAAAAAGAGTTAACTACACCACATCAAGGCATCGTAGTGCAAAG
1 CTCCACCACACCAAATGGCTCAAAAGAGAGTTAACTACACCACACCAAGGCACCGTAGTGCAAAG
* * *
29985330 CTCGTATGCATAAATATCCTATCATGTAATATATTTCATCC
66 CTCGTAGGCACAAATATCCTATCATGTAATATATTCCATCC
* *
29985371 CTCCACCACACCAAATGGCTCAAAAGAGCGTTAACTACACCACACCAAGGCACCATAGTGCAAAG
1 CTCCACCACACCAAATGGCTCAAAAGAGAGTTAACTACACCACACCAAGGCACCGTAGTGCAAAG
29985436 CTCG
66 CTCG
29985440 GTATTCCACA
Statistics
Matches: 151, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
105 3 0.02
106 148 0.98
ACGTcount: A:0.37, C:0.29, G:0.13, T:0.21
Consensus pattern (106 bp):
CTCCACCACACCAAATGGCTCAAAAGAGAGTTAACTACACCACACCAAGGCACCGTAGTGCAAAG
CTCGTAGGCACAAATATCCTATCATGTAATATATTCCATCC
Found at i:29998427 original size:240 final size:240
Alignment explanation
Indices: 29998004--29998489 Score: 954
Period size: 240 Copynumber: 2.0 Consensus size: 240
29997994 CTATAGGCAT
29998004 TATTTTATTTAGGCTTAATTCACGGTTTGTCTCTCGAAGTTTTCATTTTTTCATTTTGGTGCCTA
1 TATTTTATTTAGGCTTAATTCACGGTTTGTCTCTCGAAGTTTTCATTTTTTCATTTTGGTGCCTA
29998069 AATTTTTTTCAGCCCAATTTAGTACTTAAAATACACTTATTTCCCAATTTAATTAGTATCTAAAA
66 AATTTTTTTCAGCCCAATTTAGTACTTAAAATACACTTATTTCCCAATTTAATTAGTATCTAAAA
29998134 TATTATTCTGTTATATATTTTTGTCCAATTTTTTAACACCATTTAAAAAACATACGTGACCAATA
131 TATTATTCTGTTATATATTTTTGTCCAATTTTTTAACACCATTTAAAAAACATACGTGACCAATA
*
29998199 TAAACATGCCAGGAGGCGTTTTTAATTAAAAATATATATTTATCG
196 TAAACATGCCAGGAGGCGTTTTTAATTAAAAATATAAATTTATCG
29998244 TATTTTATTTAGGCTTAATTCACGGTTTGTCTCTCGAAGTTTTCATTTTTTCATTTTGGTGCCTA
1 TATTTTATTTAGGCTTAATTCACGGTTTGTCTCTCGAAGTTTTCATTTTTTCATTTTGGTGCCTA
29998309 AATTTTTTTCAGCCCAATTTAGTACTTAAAATACACTTATTTCCCAATTTAATTAGTATCTAAAA
66 AATTTTTTTCAGCCCAATTTAGTACTTAAAATACACTTATTTCCCAATTTAATTAGTATCTAAAA
29998374 TATTATTCTGTTATATATTTTTGTCCAATTTTTTAACACCATTTAAAAAACATACGTGACCAATA
131 TATTATTCTGTTATATATTTTTGTCCAATTTTTTAACACCATTTAAAAAACATACGTGACCAATA
*
29998439 TAAACATGCCAGGAGGCGTTTTTAATTAAAAATTTAAATTTATCG
196 TAAACATGCCAGGAGGCGTTTTTAATTAAAAATATAAATTTATCG
29998484 TATTTT
1 TATTTT
29998490 TATATATCAA
Statistics
Matches: 244, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
240 244 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (240 bp):
TATTTTATTTAGGCTTAATTCACGGTTTGTCTCTCGAAGTTTTCATTTTTTCATTTTGGTGCCTA
AATTTTTTTCAGCCCAATTTAGTACTTAAAATACACTTATTTCCCAATTTAATTAGTATCTAAAA
TATTATTCTGTTATATATTTTTGTCCAATTTTTTAACACCATTTAAAAAACATACGTGACCAATA
TAAACATGCCAGGAGGCGTTTTTAATTAAAAATATAAATTTATCG
Found at i:29999377 original size:15 final size:15
Alignment explanation
Indices: 29999357--29999437 Score: 69
Period size: 15 Copynumber: 5.4 Consensus size: 15
29999347 TTTATGGAAA
29999357 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* *
29999372 ATCAAAAATA-GAAAGT
1 ATCAAAGATATG--GGT
29999388 -TCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
29999402 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
29999416 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
29999432 ATCAAA
1 ATCAAA
29999438 TATTGGAAAG
Statistics
Matches: 50, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
14 7 0.14
15 36 0.72
16 7 0.14
ACGTcount: A:0.47, C:0.07, G:0.21, T:0.25
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:29999392 original size:30 final size:30
Alignment explanation
Indices: 29999353--29999450 Score: 135
Period size: 30 Copynumber: 3.3 Consensus size: 30
29999343 CATATTTATG
*
29999353 GAAAATCAAAGATATGGGTATCAAA-AATA
1 GAAAGTCAAAGATATGGGTATCAAATAATA
* *
29999382 GAAAGTTCAAAGATATGGGTATCAAATATTG
1 GAAAG-TCAAAGATATGGGTATCAAATAATA
* *
29999413 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATAATA
29999443 GAAAGTCA
1 GAAAGTCA
29999451 NNNNNNNNNN
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
29 4 0.06
30 53 0.83
31 7 0.11
ACGTcount: A:0.47, C:0.07, G:0.21, T:0.24
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATAATA
Found at i:30001297 original size:17 final size:17
Alignment explanation
Indices: 30001275--30001314 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
30001265 CCAATATTGA
30001275 AGAATCCACTTTATGTC
1 AGAATCCACTTTATGTC
*
30001292 AGAATCCACTTTATGTT
1 AGAATCCACTTTATGTC
30001309 AGAATC
1 AGAATC
30001315 AATATTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (17 bp):
AGAATCCACTTTATGTC
Found at i:30002971 original size:23 final size:22
Alignment explanation
Indices: 30002945--30003017 Score: 87
Period size: 23 Copynumber: 3.3 Consensus size: 22
30002935 ATAAGTGCCA
30002945 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCG-AGCTAC
*
30002968 CACTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCG-AGCTAC
*
30002991 CACTG-TAATATAGCCGA-CTAC
1 CACTGAT-ATGTAGCCGAGCTAC
30003012 CACTGA
1 CACTGA
30003018 CACTTTATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
21 9 0.20
22 2 0.05
23 33 0.75
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (22 bp):
CACTGATATGTAGCCGAGCTAC
Found at i:30003097 original size:18 final size:17
Alignment explanation
Indices: 30003071--30003109 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
30003061 ATTTTCCTTC
30003071 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
30003088 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
30003106 CACA
1 CACA
30003110 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:30008328 original size:15 final size:15
Alignment explanation
Indices: 30008303--30008337 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
30008293 GACTCTATTT
*
30008303 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
30008317 TAATTAATATTAAGA
1 TAATTAATATTAAGA
30008332 TAATTA
1 TAATTA
30008338 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:30010735 original size:18 final size:18
Alignment explanation
Indices: 30010702--30010754 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
30010692 ATTCACCTAA
*
30010702 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCCAACCCAAGT
** *
30010721 ATTCAACCCAACCCAATT
1 ACCCAACCCAACCCAAGT
30010739 ACCCAACCCAACCCAA
1 ACCCAACCCAACCCAA
30010755 TCATAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.42, C:0.45, G:0.02, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAAGT
Found at i:30011228 original size:26 final size:25
Alignment explanation
Indices: 30011194--30011246 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
30011184 AATCATAAGT
* *
30011194 TCACAAAGAACTTTTAATCAGGAAGC
1 TCACAAAGAACCTTCAATCAGG-AGC
* *
30011220 TCACGAAGAGCCTTCAATCAGGAGC
1 TCACAAAGAACCTTCAATCAGGAGC
30011245 TC
1 TC
30011247 CGGATAGCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.21
Consensus pattern (25 bp):
TCACAAAGAACCTTCAATCAGGAGC
Found at i:30013958 original size:22 final size:22
Alignment explanation
Indices: 30013917--30013958 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
30013907 TTCATCTCGT
*
30013917 TAAGCTTTAGTGACACAACACC
1 TAAGCTTTAGTGACAAAACACC
* *
30013939 TAAGCTTTGGTGTCAAAACA
1 TAAGCTTTAGTGACAAAACA
30013959 TCCTCGGTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (22 bp):
TAAGCTTTAGTGACAAAACACC
Found at i:30015258 original size:12 final size:12
Alignment explanation
Indices: 30015243--30015281 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
30015233 AAAAATGGTA
*
30015243 ATTAAAAACTTG
1 ATTAAAGACTTG
*
30015255 ATTAATGACTTG
1 ATTAAAGACTTG
*
30015267 ATTCAAGACTTG
1 ATTAAAGACTTG
30015279 ATT
1 ATT
30015282 CATGAATGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (12 bp):
ATTAAAGACTTG
Found at i:30015282 original size:12 final size:13
Alignment explanation
Indices: 30015250--30015283 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
30015240 GTAATTAAAA
30015250 ACTTGATT-AATG
1 ACTTGATTCAATG
30015262 ACTTGATTCAA-G
1 ACTTGATTCAATG
30015274 ACTTGATTCA
1 ACTTGATTCA
30015284 TGAATGAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 19 0.90
13 2 0.10
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
ACTTGATTCAATG
Found at i:30016670 original size:7 final size:7
Alignment explanation
Indices: 30016654--30016691 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
30016644 TCCCTACAAA
30016654 AATAAA-
1 AATAAAT
30016660 AATAAAT
1 AATAAAT
30016667 AATAAAT
1 AATAAAT
30016674 AATAAA-
1 AATAAAT
30016680 AATAAAT
1 AATAAAT
30016687 AATAA
1 AATAA
30016692 GAAAAAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 12 0.40
7 18 0.60
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AATAAAT
Found at i:30016672 original size:13 final size:13
Alignment explanation
Indices: 30016651--30016702 Score: 70
Period size: 13 Copynumber: 3.9 Consensus size: 13
30016641 GTCTCCCTAC
30016651 AAAAATAAA-AAT
1 AAAAATAAATAAT
30016663 AAATAATAAATAAT
1 AAA-AATAAATAAT
30016677 AAAAATAAATAAT
1 AAAAATAAATAAT
*
30016690 AAGAAAAAAATAA
1 AA-AAATAAATAA
30016703 AATTAAAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
12 3 0.08
13 18 0.50
14 15 0.42
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (13 bp):
AAAAATAAATAAT
Found at i:30016679 original size:20 final size:19
Alignment explanation
Indices: 30016654--30016703 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
30016644 TCCCTACAAA
*
30016654 AATAAAAATAAATAATAAAT
1 AATAAAAATAAATAAT-AAG
30016674 AATAAAAATAAATAATAAG
1 AATAAAAATAAATAATAAG
30016693 AA-AAAAATAAA
1 AATAAAAATAAA
30016704 ATTAAAATGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 9 0.31
19 4 0.14
20 16 0.55
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (19 bp):
AATAAAAATAAATAATAAG
Found at i:30016710 original size:13 final size:13
Alignment explanation
Indices: 30016651--30016710 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
30016641 GTCTCCCTAC
30016651 AAAAAT-AAAAAT
1 AAAAATAAAAAAT
*
30016663 AAATAATAAATAAT
1 AAA-AATAAAAAAT
*
30016677 AAAAATAAATAAT
1 AAAAATAAAAAAT
*
30016690 -AAGA-AAAAAAT
1 AAAAATAAAAAAT
*
30016701 AAAATTAAAA
1 AAAAATAAAA
30016711 TGTGTATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
11 6 0.15
12 8 0.21
13 17 0.44
14 8 0.21
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:30021102 original size:18 final size:18
Alignment explanation
Indices: 30021071--30021108 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
30021061 AAAAAATCAC
*
30021071 ATTTTTTATATTTAATAT
1 ATTTTTTATATTTAAAAT
30021089 ATTTTTTA-ATTTTAAAAT
1 ATTTTTTATA-TTTAAAAT
30021107 AT
1 AT
30021109 ATTGTGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTTTTATATTTAAAAT
Found at i:30022462 original size:16 final size:16
Alignment explanation
Indices: 30022420--30022471 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 16
30022410 GGGTGAGAAG
30022420 TAAAAGTTTAGGGGGAAAA
1 TAAAAGTTT-GGGGG--AA
*
30022439 TAAAAAGTTTTGGGGAA
1 T-AAAAGTTTGGGGGAA
30022456 TAAAAGTTTGGGGGAA
1 TAAAAGTTTGGGGGAA
30022472 AGTAAATACG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 14 0.47
17 3 0.10
19 5 0.17
20 8 0.27
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (16 bp):
TAAAAGTTTGGGGGAA
Found at i:30022654 original size:9 final size:9
Alignment explanation
Indices: 30022640--30022676 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
30022630 TATAGTTTGA
30022640 TATTCGAAT
1 TATTCGAAT
30022649 TATTCGAAT
1 TATTCGAAT
*
30022658 TATTCGAGT
1 TATTCGAAT
30022667 TATTCGAAT
1 TATTCGAAT
30022676 T
1 T
30022677 CGAAAAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:30022748 original size:9 final size:9
Alignment explanation
Indices: 30022732--30022768 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
30022722 AGTTGATTCA
30022732 AATAACTCG
1 AATAACTCG
*
30022741 ATTAACTCG
1 AATAACTCG
30022750 AATAACTCG
1 AATAACTCG
30022759 AATAACTCG
1 AATAACTCG
30022768 A
1 A
30022769 TTCGTTTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (9 bp):
AATAACTCG
Found at i:30032759 original size:34 final size:37
Alignment explanation
Indices: 30032691--30032759 Score: 99
Period size: 38 Copynumber: 1.9 Consensus size: 37
30032681 TTAGTATCTA
30032691 TATTCTAATATTTATTATTTATCATTTTAAATAAAATT
1 TATTCTAATATTTATTA-TTATCATTTTAAATAAAATT
*
30032729 TATTCTAATATTT-TTA-TAT-ATTTTACATAAA
1 TATTCTAATATTTATTATTATCATTTTAAATAAA
30032760 TTGTTTCACT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 11 0.37
35 3 0.10
37 3 0.10
38 13 0.43
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (37 bp):
TATTCTAATATTTATTATTATCATTTTAAATAAAATT
Found at i:30040273 original size:18 final size:18
Alignment explanation
Indices: 30040250--30040287 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
30040240 TTCAATTAAG
*
30040250 TCTTTCATT-AAGTGTTTT
1 TCTTTC-TTCAAGTATTTT
30040268 TCTTTCTTCAAGTATTTT
1 TCTTTCTTCAAGTATTTT
30040286 TC
1 TC
30040288 ATCTAGTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.61
Consensus pattern (18 bp):
TCTTTCTTCAAGTATTTT
Found at i:30040335 original size:12 final size:12
Alignment explanation
Indices: 30040275--30040375 Score: 69
Period size: 12 Copynumber: 7.9 Consensus size: 12
30040265 TTTTCTTTCT
30040275 TCAAGTATTTTTCA
1 TCAAGT-TTTTT-A
*
30040289 TCTAGTTCTTTTA
1 TCAAGTT-TTTTA
30040302 TCAAGTTTTTAATTA
1 TCAAG-TTTT--TTA
*
30040317 CCAAGTTTTTTA
1 TCAAGTTTTTTA
**
30040329 TCAAGTTTTGCA
1 TCAAGTTTTTTA
*
30040341 GCAAGTTCTTTT-
1 TCAAGTT-TTTTA
* *
30040353 TAAAGTTTTTCA
1 TCAAGTTTTTTA
30040365 TCAAGTTTTTT
1 TCAAGTTTTTT
30040376 CATAAAATTT
Statistics
Matches: 67, Mismatches: 14, Indels: 14
0.71 0.15 0.15
Matches are distributed among these distances:
11 3 0.04
12 32 0.48
13 10 0.15
14 15 0.22
15 7 0.10
ACGTcount: A:0.25, C:0.13, G:0.10, T:0.52
Consensus pattern (12 bp):
TCAAGTTTTTTA
Found at i:30040358 original size:24 final size:24
Alignment explanation
Indices: 30040318--30040386 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
30040308 TTTTAATTAC
*
30040318 CAAGTTTTTTATCAAGTTTTGCAG
1 CAAGTTTTTTATAAAGTTTTGCAG
* *
30040342 CAAGTTCTTTT-TAAAGTTTTTCAT
1 CAAGTT-TTTTATAAAGTTTTGCAG
*
30040366 CAAGTTTTTTCATAAAATTTT
1 CAAGTTTTTT-ATAAAGTTTT
30040387 CCATCCAGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
23 4 0.11
24 22 0.58
25 12 0.32
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.51
Consensus pattern (24 bp):
CAAGTTTTTTATAAAGTTTTGCAG
Found at i:30040381 original size:25 final size:24
Alignment explanation
Indices: 30040282--30040399 Score: 94
Period size: 25 Copynumber: 4.7 Consensus size: 24
30040272 TCTTCAAGTA
* *
30040282 TTTTTCATCTAGTTCTTTTATCAAG
1 TTTTTCATCAAGTT-TTTTATAAAG
* *
30040307 TTTTTAATTACCAAGTTTTTTATCAAG
1 TTTTTCA-T--CAAGTTTTTTATAAAG
* *
30040334 TTTTGCAGCAAGTTCTTTT-TAAAG
1 TTTTTCATCAAGTT-TTTTATAAAG
*
30040358 TTTTTCATCAAGTTTTTTCATAAAA
1 TTTTTCATCAAGTTTTTT-ATAAAG
* *
30040383 TTTTCCATCCAGTTTTT
1 TTTTTCATCAAGTTTTT
30040400 AATCATTTCG
Statistics
Matches: 76, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
23 4 0.05
24 22 0.29
25 29 0.38
26 1 0.01
27 15 0.20
28 5 0.07
ACGTcount: A:0.25, C:0.14, G:0.08, T:0.53
Consensus pattern (24 bp):
TTTTTCATCAAGTTTTTTATAAAG
Found at i:30041704 original size:6 final size:6
Alignment explanation
Indices: 30041690--30041724 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
30041680 GGTTTTCTCC
*
30041690 AAAATG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
30041725 TGACTTGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:30049125 original size:27 final size:28
Alignment explanation
Indices: 30049084--30049137 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
30049074 TTGAATATAA
*
30049084 AAGGGGTTTGCTAAGTGTTGATTCCCCC
1 AAGGGGTTTGCTAAGTGCTGATTCCCCC
*
30049112 AAGGGG-TTGTTAAGTGCTGATTCCCC
1 AAGGGGTTTGCTAAGTGCTGATTCCCC
30049138 GATTCATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (28 bp):
AAGGGGTTTGCTAAGTGCTGATTCCCCC
Found at i:30049153 original size:33 final size:33
Alignment explanation
Indices: 30049116--30049401 Score: 122
Period size: 33 Copynumber: 7.8 Consensus size: 33
30049106 TCCCCCAAGG
*
30049116 GGTTGTTAAGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * *
30049149 GGTTGCTAAGTGCTGATTCCATCGTATTTTAAATGTGGAGGA
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-T---GGT
* *
30049191 GGTTGCTTAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * *
30049224 GGTTGCTAAGTGCTGATTCCATCGTATCTTAAATGTGAAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-TG----GT
* *
30049267 GGTTGCTAAGTGCCGATTCCCTGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * * * *
30049300 GGTTTCTTAGTGCTGATTCCACCTTATTTTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CC-GA---TT-CAT-TG---GT
* * *
30049343 GGTTGCTAAGTGCTAATTCCCCGAGTCCTTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
*
30049376 GGTTGCTAAGTGCTGAATCCACCGAT
1 GGTTGCTAAGTGCTGATTCC-CCGAT
30049402 AACGGATAAC
Statistics
Matches: 186, Mismatches: 37, Indels: 59
0.66 0.13 0.21
Matches are distributed among these distances:
33 77 0.41
34 9 0.05
35 3 0.02
36 3 0.02
37 8 0.04
38 10 0.05
39 7 0.04
40 3 0.02
41 4 0.02
42 24 0.13
43 38 0.20
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.36
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
Found at i:30049317 original size:76 final size:75
Alignment explanation
Indices: 30049112--30049396 Score: 392
Period size: 76 Copynumber: 3.8 Consensus size: 75
30049102 TGATTCCCCC
*
30049112 AAGGGGTTGTTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCATCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCATCGTATT
30049177 TTAAATGTG-
66 TTAAATGTGA
* * *
30049186 GAGGAGGTTGCTTAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCATCGTAT
1 AAGG-GGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCATCGTAT
*
30049251 CTTAAATGTGAA
65 TTTAAATGTG-A
* * * * * *
30049263 AAGGGGTTGCTAAGTGCCGATTCCCTGATTCATTGGTGGTTTCTTAGTGCTGATTCCACCTTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCATCGTA-T
*
30049328 TTTGAATGTGA
65 TTTAAATGTGA
* * * *
30049339 AAGGGGTTGCTAAGTGCTAATTCCCCGAGTCCTTGGTGGTTGCTAAGTGCTGAATCCA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCA
30049397 CCGATAACGG
Statistics
Matches: 183, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
74 3 0.02
75 66 0.36
76 102 0.56
77 12 0.07
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.35
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCATCGTATT
TTAAATGTGA
Found at i:30062351 original size:344 final size:345
Alignment explanation
Indices: 30061717--30062354 Score: 1125
Period size: 344 Copynumber: 1.8 Consensus size: 345
30061707 TATTTCGGAG
30061717 TTTCAGAGCATGGTTTGTAATGCAAATTTGGTTTATGTAATTGAGTGAATTATGGCTACTTGGTT
1 TTTCAGAGCATGGTTTGTAATGCAAATTTGGTTTATGTAATTGAGTGAATTATGGCTACTTGGTT
*
30061782 CATGAATGATTCATGATTTATTTAATGGGATATGTGATATATATATATATGTAATGACTTGATAT
66 CATGAATGATTCATGATTTATTTAATGGGATATGTGA-ATATATATATATGTAATGACTTGACAT
30061847 TTATGTATAATTAGTGAGATGTTATTTGAGCTTGAGAACTTTGATAAAGAAGTTGATAAAATTTT
130 TTATGTATAATTAGTGAGATGTTATTTGAGCTTGAGAACTTTGATAAAGAAGTTGATAAAATTTT
* * *
30061912 ATACATGAATTGTAATAAGTGATTGTTCTGATCTGTACTTATGTTCAGTAATGTCTCATGACCCT
195 ATACAGGAATTGTAATAAGTGATTATTCTGATCTGTACTTATGTTCAGTAATGCCTCATGACCCT
* * *
30061977 AGTCTGGCGACAGATACGGGTTTGGGGTGTTACATTTGGTTGGTATCACAATATTTGAATAAGTA
260 AATCTGGCGACAGATACGAGTTTAGGGTGTTACATTTGGTTGGTATCACAATATTTGAATAAGTA
30062042 AATGGTAATGACTTGGTTGAA
325 AATGGTAATGACTTGGTTGAA
* *
30062063 TTTCAGAGCATGGTTTGTAATGCGAATTTGGTTTATTTAATTGAGTGAATTATGGCTACTTGGTT
1 TTTCAGAGCATGGTTTGTAATGCAAATTTGGTTTATGTAATTGAGTGAATTATGGCTACTTGGTT
* *
30062128 CGTGAATGATTCATGATTTATTTAATGGGATATGTG-ATATATATATATGTAATTACTTGACATT
66 CATGAATGATTCATGATTTATTTAATGGGATATGTGAATATATATATATGTAATGACTTGACATT
*
30062192 TATGTATGATTAGTGAGATGTTATTTGAGCTTGAGAACTTTGATAAAGAAGTTGATAAAATTTTA
131 TATGTATAATTAGTGAGATGTTATTTGAGCTTGAGAACTTTGATAAAGAAGTTGATAAAATTTTA
*
30062257 TACAGGAATTGTAATAAGTGATTATTCTGATCTGTACTTATGTTCAGTAATGCCTCGTGACCCTA
196 TACAGGAATTGTAATAAGTGATTATTCTGATCTGTACTTATGTTCAGTAATGCCTCATGACCCTA
* *
30062322 ATCTTGCGACGGATACGAGTTTAGGGTGTTACA
261 ATCTGGCGACAGATACGAGTTTAGGGTGTTACA
30062355 ATAAATGTCG
Statistics
Matches: 277, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
344 179 0.65
346 98 0.35
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (345 bp):
TTTCAGAGCATGGTTTGTAATGCAAATTTGGTTTATGTAATTGAGTGAATTATGGCTACTTGGTT
CATGAATGATTCATGATTTATTTAATGGGATATGTGAATATATATATATGTAATGACTTGACATT
TATGTATAATTAGTGAGATGTTATTTGAGCTTGAGAACTTTGATAAAGAAGTTGATAAAATTTTA
TACAGGAATTGTAATAAGTGATTATTCTGATCTGTACTTATGTTCAGTAATGCCTCATGACCCTA
ATCTGGCGACAGATACGAGTTTAGGGTGTTACATTTGGTTGGTATCACAATATTTGAATAAGTAA
ATGGTAATGACTTGGTTGAA
Found at i:30064136 original size:23 final size:23
Alignment explanation
Indices: 30064110--30064153 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
30064100 AGCAAATTGA
30064110 AAAT-ACATTAAACAAAGTTACTT
1 AAATAACATT-AACAAAGTTACTT
*
30064133 AAATAACATTAACATAGTTAC
1 AAATAACATTAACAAAGTTAC
30064154 AAATTAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.30
Consensus pattern (23 bp):
AAATAACATTAACAAAGTTACTT
Found at i:30064245 original size:14 final size:14
Alignment explanation
Indices: 30064222--30064255 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
30064212 TACAATATCC
*
30064222 AAATAATAACAATA
1 AAATAGTAACAATA
30064236 AAATAGTAACAATA
1 AAATAGTAACAATA
*
30064250 TAATAG
1 AAATAG
30064256 CAAATAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (14 bp):
AAATAGTAACAATA
Found at i:30065223 original size:33 final size:33
Alignment explanation
Indices: 30065186--30065316 Score: 181
Period size: 33 Copynumber: 4.0 Consensus size: 33
30065176 TGGGACCCCG
* * *
30065186 ATTTCCAGGTATTCTAATTCTTGTTGGATCTCT
1 ATTTCCAGGCATTCTAATTCCTGTTGGATCTCC
* * *
30065219 ATTTCCAGGGATTCTAATTCCTGTAGGAGCTCC
1 ATTTCCAGGCATTCTAATTCCTGTTGGATCTCC
*
30065252 ATTTCCAGGCATTCCAATTCCTGTTGGATCTCC
1 ATTTCCAGGCATTCTAATTCCTGTTGGATCTCC
* *
30065285 ATTTCCAGCCATTCTAATTTCTGTTGGATCTC
1 ATTTCCAGGCATTCTAATTCCTGTTGGATCTC
30065317 TATGATCTCC
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 86 1.00
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.40
Consensus pattern (33 bp):
ATTTCCAGGCATTCTAATTCCTGTTGGATCTCC
Found at i:30072354 original size:25 final size:26
Alignment explanation
Indices: 30072325--30072373 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
30072315 TATAAAGCTA
30072325 CAAATA-ATAAAAA-AGTTTTAAAATT
1 CAAATATATAAAAATA-TTTTAAAATT
30072350 CAAATATATAAAAATATTTTAAAA
1 CAAATATATAAAAATATTTTAAAA
30072374 AATAAAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.27
26 15 0.68
27 1 0.05
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (26 bp):
CAAATATATAAAAATATTTTAAAATT
Found at i:30080923 original size:21 final size:20
Alignment explanation
Indices: 30080871--30080929 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
30080861 GACTTTATAG
30080871 TAATGTTAA-TTTATTGTATT
1 TAATGTTAATTTTATT-TATT
* *
30080891 TAATTTTGATTTTATTTATT
1 TAATGTTAATTTTATTTATT
30080911 TACATGTTAATTTTCATTT
1 TA-ATGTTAATTTT-ATTT
30080930 TCATTTTCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 13 0.41
21 15 0.47
22 4 0.12
ACGTcount: A:0.27, C:0.03, G:0.07, T:0.63
Consensus pattern (20 bp):
TAATGTTAATTTTATTTATT
Found at i:30084616 original size:14 final size:14
Alignment explanation
Indices: 30084597--30084623 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30084587 TTCTATTTCA
30084597 TTTTATTATACTTT
1 TTTTATTATACTTT
30084611 TTTTATTATACTT
1 TTTTATTATACTT
30084624 AATATTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTATTATACTTT
Found at i:30110784 original size:53 final size:50
Alignment explanation
Indices: 30110711--30110882 Score: 179
Period size: 53 Copynumber: 3.3 Consensus size: 50
30110701 TTTCAATTTA
*
30110711 ATTT-CTTATTTATTTAATTTCAGCTCTTCATTAATTTTTTTATTTCATTATT
1 ATTTACTTATTTATTTAATTTCAGCTTTTCATT-A-TTTTTTATTTC-TTATT
* **
30110763 ATTTACTTATTTATTTAATTTCAACTTTTCATTATTTTTCCTTT-TT-TT
1 ATTTACTTATTTATTTAATTTCAGCTTTTCATTATTTTTTATTTCTTATT
*
30110811 ATTTACTTATTTATTATGGCAATTTCAGCCTTTTCATGATTTTTTATTTGCTTATTT
1 ATTTACTTATTTATT-T---AATTTCAG-CTTTTCATTATTTTTTATTT-CTTA-TT
*
30110868 ATTTATTTATTTATT
1 ATTTACTTATTTATT
30110883 ATTGCCTTGC
Statistics
Matches: 101, Mismatches: 9, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
48 17 0.17
49 3 0.03
51 8 0.08
52 12 0.12
53 43 0.43
55 2 0.02
57 16 0.16
ACGTcount: A:0.22, C:0.11, G:0.03, T:0.63
Consensus pattern (50 bp):
ATTTACTTATTTATTTAATTTCAGCTTTTCATTATTTTTTATTTCTTATT
Found at i:30114169 original size:10 final size:10
Alignment explanation
Indices: 30114156--30114196 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
30114146 CATATTTTTA
30114156 ATCTCAATTT
1 ATCTCAATTT
30114166 ATCTCATATTT
1 ATCTCA-ATTT
30114177 -TACT-AATTT
1 AT-CTCAATTT
30114186 ATCTCAATTT
1 ATCTCAATTT
30114196 A
1 A
30114197 ATTCTACATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
9 6 0.22
10 15 0.56
11 6 0.22
ACGTcount: A:0.32, C:0.17, G:0.00, T:0.51
Consensus pattern (10 bp):
ATCTCAATTT
Found at i:30116312 original size:19 final size:19
Alignment explanation
Indices: 30116267--30116313 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
30116257 AATAAAATAG
*
30116267 TAACAACATAATAGTGAAA
1 TAACAACAAAATAGTGAAA
* *
30116286 TGATAACAAAATAGTGAGAA
1 TAACAACAAAATAGTGA-AA
30116306 -AACAACAA
1 TAACAACAA
30116314 GAAAATAACA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 20 0.91
20 2 0.09
ACGTcount: A:0.60, C:0.11, G:0.13, T:0.17
Consensus pattern (19 bp):
TAACAACAAAATAGTGAAA
Found at i:30117291 original size:6 final size:6
Alignment explanation
Indices: 30117280--30117310 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
30117270 TTCCAAATTC
30117280 CCCTTT CCCTTT CCCTTT CCCTTT CCCTTT C
1 CCCTTT CCCTTT CCCTTT CCCTTT CCCTTT C
30117311 TCTGTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
CCCTTT
Found at i:30122736 original size:3 final size:3
Alignment explanation
Indices: 30122728--30122754 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
30122718 TAACTAATTA
30122728 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
30122755 TGTATTTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:30124781 original size:3 final size:3
Alignment explanation
Indices: 30124767--30124796 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
30124757 TTAATGATAC
*
30124767 TAA TAC TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
30124797 AGCCAACTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:30128546 original size:17 final size:18
Alignment explanation
Indices: 30128506--30128549 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
30128496 ATTTATATTT
30128506 TAAAAATATTAGTTACTA
1 TAAAAATATTAGTTACTA
30128524 TAAAAAATATTAG-TA-TGA
1 T-AAAAATATTAGTTACT-A
30128542 TAAAAATA
1 TAAAAATA
30128550 ATTTCTAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.33
18 5 0.21
19 11 0.46
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (18 bp):
TAAAAATATTAGTTACTA
Found at i:30143878 original size:18 final size:18
Alignment explanation
Indices: 30143852--30143892 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
30143842 CCCGAAATAT
*
30143852 AGGCATGAAATTTTGCCC
1 AGGCCTGAAATTTTGCCC
30143870 AGGCCTGAAATTTTGCCC
1 AGGCCTGAAATTTTGCCC
30143888 AGGCC
1 AGGCC
30143893 CGGCCCGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (18 bp):
AGGCCTGAAATTTTGCCC
Found at i:30147365 original size:13 final size:11
Alignment explanation
Indices: 30147333--30147375 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
30147323 CCTTTTTTAA
*
30147333 AATAAAATAAT
1 AATAAAATATT
30147344 AAT-AAATATCT
1 AATAAAATAT-T
30147355 AAGTAAAATATT
1 AA-TAAAATATT
30147367 AATAAAATA
1 AATAAAATA
30147376 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:30147435 original size:23 final size:23
Alignment explanation
Indices: 30147409--30147452 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
30147399 ATTACCATTT
30147409 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
30147432 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
30147453 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:30147445 original size:13 final size:11
Alignment explanation
Indices: 30147413--30147455 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
30147403 CCATTTTCTA
*
30147413 AATAAAATAAT
1 AATAAAATATT
30147424 AAT-AAATATCT
1 AATAAAATAT-T
30147435 AAGTAAAATATT
1 AA-TAAAATATT
30147447 AATAAAATA
1 AATAAAATA
30147456 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:30148316 original size:10 final size:10
Alignment explanation
Indices: 30148283--30148360 Score: 57
Period size: 10 Copynumber: 7.5 Consensus size: 10
30148273 AATGATTTCT
*
30148283 TAAATAATTA
1 TAAAAAATTA
* *
30148293 TGAAAATATCA
1 T-AAAAAATTA
30148304 TAAAAAATTA
1 TAAAAAATTA
*
30148314 TAAAAAAGTA
1 TAAAAAATTA
*
30148324 TTTAAAAATTA
1 -TAAAAAATTA
* * *
30148335 TTAAGAACTA
1 TAAAAAATTA
30148345 TAAAAAATTA
1 TAAAAAATTA
30148355 CTAAAA
1 -TAAAA
30148361 TTTTAAATTA
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
10 32 0.62
11 20 0.38
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (10 bp):
TAAAAAATTA
Done.