Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 96 of 210
Found at i:33072184 original size:20 final size:20
Alignment explanation
Indices: 33072142--33072187 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
33072132 AAAATATTGG
* * * *
33072142 TATAGCATTAGAAATTTTGA
1 TATAACATTACAAAATTTAA
33072162 TATAACATTACAAAATTTAA
1 TATAACATTACAAAATTTAA
33072182 TATAAC
1 TATAAC
33072188 TTTTTTTTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.37
Consensus pattern (20 bp):
TATAACATTACAAAATTTAA
Found at i:33074952 original size:73 final size:73
Alignment explanation
Indices: 33074837--33074976 Score: 174
Period size: 73 Copynumber: 1.9 Consensus size: 73
33074827 AGCTCATAAA
* * *
33074837 AGCCATATTCAGGAAGCTCATGCGAGCCAATAACGGGTAGCTCTGAAGAGCCATTAATCAGGAAG
1 AGCCATATTCAGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCCGAAGAGCCATTAATCAGGAAG
33074902 CTTCGGAT
66 CTTCGGAT
* * * * ** *
33074910 AGCCATATATCGGGAAGTTCAAGCGAGCC-ATATCGGGAAGCTCCGGAGAGTGATTAATTAGGAA
1 AGCCATAT-TCAGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCCGAAGAGCCATTAATCAGGAA
33074974 GCT
65 GCT
33074977 CACAAAGAGC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
73 39 0.70
74 17 0.30
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (73 bp):
AGCCATATTCAGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCCGAAGAGCCATTAATCAGGAAG
CTTCGGAT
Found at i:33074992 original size:26 final size:26
Alignment explanation
Indices: 33074963--33075012 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
33074953 CGGAGAGTGA
* *
33074963 TTAATTAGGAAGCTCACAAAGAGCCT
1 TTAATCAGAAAGCTCACAAAGAGCCT
*
33074989 TTAATCAGAAAGCTCACGAAGAGC
1 TTAATCAGAAAGCTCACAAAGAGC
33075013 TATATATCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
TTAATCAGAAAGCTCACAAAGAGCCT
Found at i:33082534 original size:24 final size:25
Alignment explanation
Indices: 33082487--33082546 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 25
33082477 AGCCCTCTCT
*
33082487 CGAGCCATATAACAGGAAGCTCATG
1 CGAGCCATATAACAAGAAGCTCATG
* *
33082512 TGAGCCATAT-TCAAGAAGCTCATG
1 CGAGCCATATAACAAGAAGCTCATG
33082536 CGAGCCA-ATAA
1 CGAGCCATATAA
33082547 TGGGTAGCTC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 2 0.07
24 18 0.62
25 9 0.31
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (25 bp):
CGAGCCATATAACAAGAAGCTCATG
Found at i:33082581 original size:25 final size:25
Alignment explanation
Indices: 33082537--33082672 Score: 84
Period size: 25 Copynumber: 5.5 Consensus size: 25
33082527 AAGCTCATGC
* *
33082537 GAGCCAATAA-TGGGTAGCTCCAAA
1 GAGCCATTAATTGGGAAGCTCCAAA
33082561 GAGCCATTAATTGGGAAGCTCCAAA
1 GAGCCATTAATTGGGAAGCTCCAAA
* * * *
33082586 TAGCCA-TATATCGGGAAG-TTCAAGT
1 GAGCCATTA-ATTGGGAAGCTCCAA-A
* **
33082611 GAGCCA-T-ATTAGGAAGCTCCGGA
1 GAGCCATTAATTGGGAAGCTCCAAA
* **
33082634 GAGCGATTAATCAGGAAGCTCACAAA
1 GAGCCATTAATTGGGAAGCTC-CAAA
**
33082660 GAGCGTTTAATTG
1 GAGCCATTAATTG
33082673 AAAAGCTTAG
Statistics
Matches: 85, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
23 12 0.14
24 18 0.21
25 43 0.51
26 12 0.14
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (25 bp):
GAGCCATTAATTGGGAAGCTCCAAA
Found at i:33084619 original size:28 final size:28
Alignment explanation
Indices: 33084579--33084677 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
33084569 TGACTTTCGA
33084579 CACTAAGTGTGCGAATTTAATTGTAAAG
1 CACTAAGTGTGCGAATTTAATTGTAAAG
*
33084607 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAATTTAATTGTAAAG
* ** * *
33084635 CACTAAATGTGCGAGGTTAATGGCAAAG
1 CACTAAGTGTGCGAATTTAATTGTAAAG
33084663 CACTAAGTGTGCGAA
1 CACTAAGTGTGCGAA
33084678 CTTATTAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27
Consensus pattern (28 bp):
CACTAAGTGTGCGAATTTAATTGTAAAG
Found at i:33085403 original size:23 final size:23
Alignment explanation
Indices: 33085377--33085492 Score: 67
Period size: 23 Copynumber: 5.0 Consensus size: 23
33085367 CTTTAATGGT
*
33085377 CCAAATTGGTATATATATGCTGC
1 CCAAATTGGTATATACATGCTGC
* * *
33085400 CCAATTTTGGTGA-ATAAATGCTGT
1 CCAA-ATTGGT-ATATACATGCTGC
** * *
33085424 CCAGTTTTGTATATACATCCTG-
1 CCAAATTGGTATATACATGCTGC
* * * *
33085446 TCAAATTTTGTGTATA-AGTGCTGT
1 CCAAA-TTGGTATATACA-TGCTGC
33085470 CCAAATTGGTATATACATGCTGC
1 CCAAATTGGTATATACATGCTGC
33085493 TCAATTTCTG
Statistics
Matches: 70, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
22 4 0.06
23 43 0.61
24 22 0.31
25 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (23 bp):
CCAAATTGGTATATACATGCTGC
Found at i:33085482 original size:46 final size:45
Alignment explanation
Indices: 33085375--33085522 Score: 161
Period size: 46 Copynumber: 3.2 Consensus size: 45
33085365 TGCTTTAATG
* * * *
33085375 GTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCT
1 GTCCAAATTGGTATATACATGCTG-TCAATTTT-GTGTATAAGTGCT
** * *
33085422 GTCCAGTTTTGTATATACATCCTGTCAAATTTTGTGTATAAGTGCT
1 GTCCAAATTGGTATATACATGCTGTC-AATTTTGTGTATAAGTGCT
*
33085468 GTCCAAATTGGTATATACATGCTGCTCAATTTCTGATGTATAAGAGCT
1 GTCCAAATTGGTATATACATGCTG-TCAATTT-TG-TGTATAAGTGCT
33085516 GTCCAAA
1 GTCCAAA
33085523 CAGGGTAGAT
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
46 37 0.44
47 29 0.35
48 18 0.21
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (45 bp):
GTCCAAATTGGTATATACATGCTGTCAATTTTGTGTATAAGTGCT
Found at i:33087241 original size:3 final size:3
Alignment explanation
Indices: 33087233--33087261 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
33087223 CATTTTTAGT
33087233 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
33087262 TTCTTTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:33087493 original size:12 final size:12
Alignment explanation
Indices: 33087478--33087502 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33087468 TTACTTTTCA
33087478 TATTATTCTTAT
1 TATTATTCTTAT
33087490 TATTATTCTTAT
1 TATTATTCTTAT
33087502 T
1 T
33087503 TTAAGTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (12 bp):
TATTATTCTTAT
Found at i:33109416 original size:13 final size:11
Alignment explanation
Indices: 33109369--33109420 Score: 50
Period size: 12 Copynumber: 4.4 Consensus size: 11
33109359 AACAAAAACC
*
33109369 AAAACTAATACT
1 AAAA-TAATAAT
*
33109381 AAAGTAATAAAT
1 AAAATAAT-AAT
33109393 AAAATAATAAT
1 AAAATAATAAT
33109404 AAAACTAAATAAT
1 AAAA-T-AATAAT
33109417 AAAA
1 AAAA
33109421 AATGTAACTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 11 0.32
12 13 0.38
13 10 0.29
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (11 bp):
AAAATAATAAT
Found at i:33115880 original size:25 final size:25
Alignment explanation
Indices: 33115835--33115899 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
33115825 GTCATTAGGG
* * *
33115835 TTACCGATTC-CAGCTCTTATGAGC
1 TTACCGATACTCAGCTCGTATGACC
33115859 TTACCGATACTCAGCTCGTATGACC
1 TTACCGATACTCAGCTCGTATGACC
* *
33115884 TTACCGTTATTCAGCT
1 TTACCGATACTCAGCT
33115900 AAGAGGAGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 9 0.26
25 26 0.74
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (25 bp):
TTACCGATACTCAGCTCGTATGACC
Found at i:33122854 original size:25 final size:25
Alignment explanation
Indices: 33122793--33122857 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
33122783 TCATTAGGGT
*
33122793 TACCGAT-TTCAGCTCTTATGAGCA
1 TACCGATATTCAGCTCGTATGAGCA
* *
33122817 TACCGATACTCAGCTCGTATGAGCT
1 TACCGATATTCAGCTCGTATGAGCA
33122842 TACC-ATTATTCAGCTC
1 TACCGA-TATTCAGCTC
33122858 AGAGGAGCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.23
25 27 0.77
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (25 bp):
TACCGATATTCAGCTCGTATGAGCA
Found at i:33128463 original size:29 final size:29
Alignment explanation
Indices: 33128425--33128480 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
33128415 TATACTTTTG
*
33128425 ATTAAATTTAATTAATCAAAA-TTAATTT
1 ATTAAATTTAATTAAGCAAAACTTAATTT
33128453 ATTAAACTTTAATTAAGCAAAACTTAAT
1 ATTAAA-TTTAATTAAGCAAAACTTAAT
33128481 CTTAATTAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 6 0.24
29 14 0.56
30 5 0.20
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (29 bp):
ATTAAATTTAATTAAGCAAAACTTAATTT
Found at i:33128464 original size:15 final size:14
Alignment explanation
Indices: 33128425--33128468 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
33128415 TATACTTTTG
33128425 ATTAAATTTAATTA
1 ATTAAATTTAATTA
* * *
33128439 ATCAAAATTAATTT
1 ATTAAATTTAATTA
33128453 ATTAAACTTTAATTA
1 ATTAAA-TTTAATTA
33128468 A
1 A
33128469 GCAAAACTTA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTAAATTTAATTA
Found at i:33130571 original size:20 final size:20
Alignment explanation
Indices: 33130546--33130588 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
33130536 TTGGTGTTTT
* *
33130546 TATTTTATTTTAGTTTTATA
1 TATTTTATTATAGTTTTAAA
*
33130566 TATTTTATTATGGTTTTAAA
1 TATTTTATTATAGTTTTAAA
33130586 TAT
1 TAT
33130589 AAAATTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (20 bp):
TATTTTATTATAGTTTTAAA
Found at i:33135614 original size:11 final size:11
Alignment explanation
Indices: 33135598--33135627 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
33135588 TGTAGCCCAT
33135598 TTTTTGTTTTA
1 TTTTTGTTTTA
33135609 TTTTTGTTTTA
1 TTTTTGTTTTA
*
33135620 TGTTTGTT
1 TTTTTGTT
33135628 GACAGTAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.00, G:0.13, T:0.80
Consensus pattern (11 bp):
TTTTTGTTTTA
Found at i:33140406 original size:39 final size:40
Alignment explanation
Indices: 33140342--33140436 Score: 113
Period size: 39 Copynumber: 2.4 Consensus size: 40
33140332 GCGTTTGGAT
* *
33140342 AAAAAATGCCGCTAAAAATCTAGCATTAGCGGCGCTTTAC
1 AAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTAC
* *
33140382 AAAAAACG-CGCTAAAGATCGAGCATTAGTGGCGCTTTA-
1 AAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTAC
* *
33140420 AGGAAAGCGCCGCTAAA
1 A-AAAAACGCCGCTAAA
33140437 CGCCGCAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
38 1 0.02
39 32 0.68
40 14 0.30
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (40 bp):
AAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTAC
Found at i:33140580 original size:65 final size:65
Alignment explanation
Indices: 33140458--33140583 Score: 155
Period size: 66 Copynumber: 1.9 Consensus size: 65
33140448 ACCGAAGCCC
* * * * *
33140458 AACGACAACGTTTTTTGACCTTTTGGGGCTTTAGTGACGTTTTTTGAGAAAATGCCGCTAAGGCT
1 AACGACAACGTTTTTTAACCTTTCGGGGCTTTAGCGACGTTTTTAGAGAAAACGCCGCTAAGGCT
* ** *
33140523 AACGACATCGTTTTTTTAACCTTTCGGGGCTTTAGCGGTGTTTTTAGAG-AAGCGCCGCTAA
1 AACGACAACG-TTTTTTAACCTTTCGGGGCTTTAGCGACGTTTTTAGAGAAAACGCCGCTAA
33140584 TGCTCCGGGC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 19 0.37
66 32 0.63
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (65 bp):
AACGACAACGTTTTTTAACCTTTCGGGGCTTTAGCGACGTTTTTAGAGAAAACGCCGCTAAGGCT
Found at i:33140606 original size:41 final size:41
Alignment explanation
Indices: 33140549--33140703 Score: 215
Period size: 41 Copynumber: 3.8 Consensus size: 41
33140539 TAACCTTTCG
* *
33140549 GGGCTTTAGCGGTGTTTTTAGAGAAGCGCCGCTAATGCTCC
1 GGGCTTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCC
* * *
33140590 GGGCTTTAGCGGTGTTTTTTGAGAAGCGCCGCTAATGCTCC
1 GGGCTTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCC
*
33140631 GGGCTTTAGCGGCGTTTTT-GAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTAG-AAAAGCGCCGCTAATGCTCC
*
33140672 GTGCTTTAGCGGCGTTTTTTA-AAAAGCGCCGC
1 GGGCTTTAGCGGCG-TTTTTAGAAAAGCGCCGC
33140704 AAAAACATTT
Statistics
Matches: 106, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
40 1 0.01
41 100 0.94
42 5 0.05
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCC
Found at i:33143387 original size:2 final size:2
Alignment explanation
Indices: 33143380--33143407 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
33143370 TCTTGAACTA
33143380 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33143408 CCTTGCAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33147345 original size:44 final size:42
Alignment explanation
Indices: 33147270--33147460 Score: 206
Period size: 43 Copynumber: 4.5 Consensus size: 42
33147260 TTTTTGCGAG
* * * * *
33147270 AAGCGTCGCTAAAGGT-TTGTTCTATAGCGGCGTTTGTGATAAA
1 AAGCGCCGCTAAAGGTCATGGTATATAACGGCGTTTGTG--AAA
* *
33147313 AAACGCCGCTAAAGGTCATGTTCAT-TAACGGCGTTTGTGACAA
1 AAGCGCCGCTAAAGGTCATGGT-ATATAACGGCGTTTGTGA-AA
* * *
33147356 AAGCGCCGCTAAAGTTCATGGTATTTAGCGGCGTTTGTGGAAA
1 AAGCGCCGCTAAAGGTCATGGTATATAACGGCGTTTGT-GAAA
* **
33147399 AAGCGCCGCTAAAGGTCGTGGTATATAACGGCGTTTGTGGGA
1 AAGCGCCGCTAAAGGTCATGGTATATAACGGCGTTTGTGAAA
33147441 AAGCGCCGCTAAAGGTCATG
1 AAGCGCCGCTAAAGGTCATG
33147461 ACTTTTAGCG
Statistics
Matches: 127, Mismatches: 16, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
42 24 0.19
43 83 0.65
44 19 0.15
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (42 bp):
AAGCGCCGCTAAAGGTCATGGTATATAACGGCGTTTGTGAAA
Found at i:33147469 original size:85 final size:87
Alignment explanation
Indices: 33147294--33147476 Score: 239
Period size: 86 Copynumber: 2.1 Consensus size: 87
33147284 GTTTGTTCTA
* *
33147294 TAGCGGCGTTTGTGATAAAAAACGCCGCTAAAGGTCATGTTCATTAACGGCGTTTGTGACAAAAG
1 TAGCGGCGTTTGTGAGAAAAAACGCCGCTAAAGGTCATGGTCATTAACGGCGTTTGTGACAAAAG
* *
33147359 CGCCGCTAAAGTTCATGGTATT
66 CGCCGCTAAAGGTCATGCTATT
* * **
33147381 TAGCGGCGTTTGTG-GAAAAAGCGCCGCTAAAGGTCGTGGT-ATATAACGGCGTTTGTG-GGAAA
1 TAGCGGCGTTTGTGAGAAAAAACGCCGCTAAAGGTCATGGTCAT-TAACGGCGTTTGTGACAAAA
33147443 GCGCCGCTAAAGGTCATGACT-TT
65 GCGCCGCTAAAGGTCATG-CTATT
*
33147466 TAGCGGTGTTT
1 TAGCGGCGTTT
33147477 ATTTCTAAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
85 34 0.40
86 37 0.44
87 14 0.16
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (87 bp):
TAGCGGCGTTTGTGAGAAAAAACGCCGCTAAAGGTCATGGTCATTAACGGCGTTTGTGACAAAAG
CGCCGCTAAAGGTCATGCTATT
Found at i:33151823 original size:19 final size:20
Alignment explanation
Indices: 33151801--33151852 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
33151791 GGGTCTTTTT
*
33151801 ATGAAATTTAATGCATG-TG-
1 ATGAAATGTAATGC-TGATGC
33151820 ATGAAATGTAATGCTGATGC
1 ATGAAATGTAATGCTGATGC
33151840 ATGAAATG-AATGC
1 ATGAAATGTAATGC
33151853 AAAAAAGGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 2 0.07
19 20 0.67
20 8 0.27
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (20 bp):
ATGAAATGTAATGCTGATGC
Found at i:33165587 original size:18 final size:18
Alignment explanation
Indices: 33165561--33165596 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
33165551 ATTTCATATC
33165561 AATTATCAATAGCAATTT
1 AATTATCAATAGCAATTT
* *
33165579 AATTGTCAATATCAATTT
1 AATTATCAATAGCAATTT
33165597 TCATATCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.42
Consensus pattern (18 bp):
AATTATCAATAGCAATTT
Found at i:33173416 original size:24 final size:25
Alignment explanation
Indices: 33173389--33173445 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
33173379 AAGTTCAAGC
33173389 GAGCC-TTATAAGGAAAG-TCACAAA
1 GAGCCATTA-AAGGAAAGCTCACAAA
* *
33173413 GAGCCAATTAACGGAAAGCTCACGAA
1 GAGCC-ATTAAAGGAAAGCTCACAAA
33173439 GAGCCAT
1 GAGCCAT
33173446 AATCGGGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 5 0.18
25 9 0.32
26 14 0.50
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.14
Consensus pattern (25 bp):
GAGCCATTAAAGGAAAGCTCACAAA
Found at i:33177828 original size:15 final size:16
Alignment explanation
Indices: 33177805--33177839 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
33177795 AATTAAAACA
*
33177805 TATTGACCATTAGA-C
1 TATTAACCATTAGACC
33177820 TATTAACCATTAGACC
1 TATTAACCATTAGACC
33177836 TATT
1 TATT
33177840 TACATGCCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (16 bp):
TATTAACCATTAGACC
Found at i:33178874 original size:26 final size:26
Alignment explanation
Indices: 33178839--33178990 Score: 109
Period size: 26 Copynumber: 6.0 Consensus size: 26
33178829 ACAGCTCTTA
*
33178839 TGAGCGTCCCGA-TATATGGCTCTTCG
1 TGAGCTTCCCGATTA-ATGGCTCTTCG
* *
33178865 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAATGGCTCTTCG
** *
33178891 TGAGCTTCTTGATTAATGGCTCTCCG
1 TGAGCTTCCCGATTAATGGCTCTTCG
* * *
33178917 -GAGCTTCCCGA-TATTGGCTC-GCT
1 TGAGCTTCCCGATTAATGGCTCTTCG
* * * * *
33178940 TCAACTTTCCTA-TATATGGCTATTCG
1 TGAGCTTCCCGATTA-ATGGCTCTTCG
*
33178966 -GAGCTTCCTGATTAATGGCTCTTCG
1 TGAGCTTCCCGATTAATGGCTCTTCG
33178991 AAGCTACCCG
Statistics
Matches: 94, Mismatches: 27, Indels: 11
0.71 0.20 0.08
Matches are distributed among these distances:
23 1 0.01
24 17 0.18
25 30 0.32
26 44 0.47
27 2 0.02
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
TGAGCTTCCCGATTAATGGCTCTTCG
Found at i:33178983 original size:25 final size:25
Alignment explanation
Indices: 33178854--33178995 Score: 105
Period size: 25 Copynumber: 5.6 Consensus size: 25
33178844 GTCCCGATAT
*
33178854 ATGGCTCTTCGTGAGCTTCCCGATTA
1 ATGGCTCTTCG-GAGCTTCCTGATTA
* * *
33178880 AAGGCTCTTTGTGAGCTTCTTGATTA
1 ATGGCTCTTCG-GAGCTTCCTGATTA
* *
33178906 ATGGCTCTCCGGAGCTTCCCGA-TA
1 ATGGCTCTTCGGAGCTTCCTGATTA
* *
33178930 TTGGCTCGCTTC--AACTTTCCT-A-TA
1 ATGGCT--CTTCGGAGC-TTCCTGATTA
*
33178954 TATGGCTATTCGGAGCTTCCTGATTA
1 -ATGGCTCTTCGGAGCTTCCTGATTA
*
33178980 ATGGCTCTTCGAAGCT
1 ATGGCTCTTCGGAGCT
33178996 ACCCGTTATT
Statistics
Matches: 90, Mismatches: 18, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
23 3 0.03
24 17 0.19
25 35 0.39
26 35 0.39
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.36
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTTCCTGATTA
Found at i:33179084 original size:25 final size:25
Alignment explanation
Indices: 33179056--33179110 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
33179046 CCGTTATACA
*
33179056 GCTCGGATAAGCTTCCTATTATATG
1 GCTCGCATAAGCTTCCTATTATATG
* * *
33179081 GCTCACATGAGCTTTCTATTATATG
1 GCTCGCATAAGCTTCCTATTATATG
33179106 GCTCG
1 GCTCG
33179111 AGAGAGGGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (25 bp):
GCTCGCATAAGCTTCCTATTATATG
Found at i:33181419 original size:30 final size:30
Alignment explanation
Indices: 33181379--33181453 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
33181369 TCTAAGCCTG
* * *
33181379 AGCCCTATACAGTAGCAGTGTGTGGGCCAT
1 AGCCCAATACAGTAACAGAGTGTGGGCCAT
* *
33181409 AGCCCAATACAGTAACAGAGTGTGGGTCTT
1 AGCCCAATACAGTAACAGAGTGTGGGCCAT
33181439 AGCCCAATACAGTAA
1 AGCCCAATACAGTAA
33181454 TAGTGCAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (30 bp):
AGCCCAATACAGTAACAGAGTGTGGGCCAT
Found at i:33181633 original size:26 final size:26
Alignment explanation
Indices: 33181565--33181665 Score: 143
Period size: 26 Copynumber: 3.9 Consensus size: 26
33181555 CACCAATATC
33181565 GCAGCAAAGCTGCCAGTAATAGTAA-
1 GCAGCAAAGCTGCCAGTAATAGTAAT
* *
33181590 CCAGCAAAGCTACCAGTAATAGTAAT
1 GCAGCAAAGCTGCCAGTAATAGTAAT
* *
33181616 GCAGTAGAGCTGCCAGT-ATCAGTAAT
1 GCAGCAAAGCTGCCAGTAAT-AGTAAT
33181642 GCAGCAAAGCTGCCAGTAATAGTA
1 GCAGCAAAGCTGCCAGTAATAGTA
33181666 TTTGTGGAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
25 25 0.38
26 38 0.58
27 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAATAGTAAT
Found at i:33181691 original size:52 final size:52
Alignment explanation
Indices: 33181591--33181691 Score: 114
Period size: 52 Copynumber: 1.9 Consensus size: 52
33181581 TAATAGTAAC
* * * *
33181591 CAGCAAAGCTACCAGTAATAGTAATGCAGTAGAGCTGCCAGTATCAGTAATG
1 CAGCAAAGCTACCAGTAATAGTAATGCAGAAAAGCCGCCACTATCAGTAATG
* * **
33181643 CAGCAAAGCTGCCAGTAATAGTATTTGTGGAAAAGCCGCCACTA-CAGTA
1 CAGCAAAGCTACCAGTAATAGTA-ATGCAGAAAAGCCGCCACTATCAGTA
33181692 TACTTCCCCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
52 27 0.68
53 13 0.32
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (52 bp):
CAGCAAAGCTACCAGTAATAGTAATGCAGAAAAGCCGCCACTATCAGTAATG
Found at i:33181879 original size:27 final size:28
Alignment explanation
Indices: 33181857--33182056 Score: 171
Period size: 27 Copynumber: 7.4 Consensus size: 28
33181847 AGGGTATAAC
33181857 GGTCATTTTACCCTATAGA-GGTATTTT
1 GGTCATTTTACCCTATAGAGGGTATTTT
* *
33181884 GGTAATTTTACCC-ATCGAGGGTATTTT
1 GGTCATTTTACCCTATAGAGGGTATTTT
* *
33181911 GGTCATTTTACCCT-TCGAGGGTATTTC
1 GGTCATTTTACCCTATAGAGGGTATTTT
* * * *
33181938 AGTAATTTTACCC-ATCGAGGGTATTTC
1 GGTCATTTTACCCTATAGAGGGTATTTT
* * * * *
33181965 GATAATTTTACCC-ATCGGGGGTATTTC
1 GGTCATTTTACCCTATAGAGGGTATTTT
* * *
33181992 GGTCATTTTACCC-ATCGGGGGTATTTC
1 GGTCATTTTACCCTATAGAGGGTATTTT
* * *
33182019 GGTCATTTTACCTTATTG-GGGTATTTC
1 GGTCATTTTACCCTATAGAGGGTATTTT
*
33182046 AGTCATTTTAC
1 GGTCATTTTAC
33182057 ATATTTTAGG
Statistics
Matches: 155, Mismatches: 14, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
26 4 0.03
27 148 0.95
28 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (28 bp):
GGTCATTTTACCCTATAGAGGGTATTTT
Found at i:33181934 original size:54 final size:54
Alignment explanation
Indices: 33181847--33182056 Score: 244
Period size: 54 Copynumber: 3.9 Consensus size: 54
33181837 TCATCTCCTA
** * *
33181847 AGGGTATAACGGTCATTTTACCCTATAGA-GGTATTTTGGTAATTTTACCCATCG
1 AGGGTATTTCGGTCATTTTACCCT-TCGAGGGTATTTCGGTAATTTTACCCATCG
* *
33181901 AGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCATCG
1 AGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCG
* * * * *
33181955 AGGGTATTTCGATAATTTTACCCATCGGGGGTATTTCGGTCATTTTACCCATCG
1 AGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCG
* * * * *
33182009 GGGGTATTTCGGTCATTTTACCTTATTG-GGGTATTTCAGTCATTTTAC
1 AGGGTATTTCGGTCATTTTACCCT-TCGAGGGTATTTCGGTAATTTTAC
33182057 ATATTTTAGG
Statistics
Matches: 134, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
53 3 0.02
54 129 0.96
55 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCG
Found at i:33181971 original size:81 final size:81
Alignment explanation
Indices: 33181861--33182045 Score: 246
Period size: 81 Copynumber: 2.3 Consensus size: 81
33181851 TATAACGGTC
* * * *
33181861 ATTTTACCCTATAGAGGTATTTTGGTAATTTTACCCATCGAGGGTATTTTGGTCATTTTACCCTT
1 ATTTTACCCTATAGAGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCAT
33181926 CGAGGGTATTTCAGTA
66 CGAGGGTATTTCAGTA
* *
33181942 ATTTTACCC-ATCGAGGGTATTTCGATAATTTTACCCATCGGGGGTATTTCGGTCATTTTACCCA
1 ATTTTACCCTATAGA-GGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCA
* * *
33182006 TCGGGGGTATTTCGGTC
65 TCGAGGGTATTTCAGTA
* * *
33182023 ATTTTACCTTATTGGGGTATTTC
1 ATTTTACCCTATAGAGGTATTTC
33182046 AGTCATTTTA
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 4 0.04
81 83 0.92
82 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (81 bp):
ATTTTACCCTATAGAGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCAT
CGAGGGTATTTCAGTA
Found at i:33182054 original size:81 final size:79
Alignment explanation
Indices: 33181847--33182056 Score: 240
Period size: 81 Copynumber: 2.6 Consensus size: 79
33181837 TCATCTCCTA
** * * *
33181847 AGGGTATAACGGTCATTTTACCCTATAGAGGTATTTTGGTAATTTTACCCATCGAGGGTATTTTG
1 AGGGTATTTCGGTCATTTTA-CCTATAGGGGTA-TTTCGTAATTTTACCCATCGAGGGTATTTCG
*
33181912 GTCATTTTACCCTTCG
64 GTCATTTTACCCATCG
* * * * *
33181928 AGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGGGGGTATTTCG
1 AGGGTATTTCGGTCATTTTACCTATAG-GGGTATTTCG-TAATTTTACCCATCGAGGGTATTTCG
33181993 GTCATTTTACCCATCG
64 GTCATTTTACCCATCG
* * *
33182009 GGGGTATTTCGGTCATTTTACCTTATTGGGGTATTTCAGTCATTTTAC
1 AGGGTATTTCGGTCATTTTACC-TATAGGGGTATTTC-GTAATTTTAC
33182057 ATATTTTAGG
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
80 9 0.08
81 95 0.88
82 4 0.04
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (79 bp):
AGGGTATTTCGGTCATTTTACCTATAGGGGTATTTCGTAATTTTACCCATCGAGGGTATTTCGGT
CATTTTACCCATCG
Found at i:33184786 original size:19 final size:19
Alignment explanation
Indices: 33184762--33184799 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33184752 CAACCAAATA
33184762 AATTCTCGGATCAAACTAT
1 AATTCTCGGATCAAACTAT
33184781 AATTCTCGGATCAAACTAT
1 AATTCTCGGATCAAACTAT
33184800 CTACGCATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (19 bp):
AATTCTCGGATCAAACTAT
Found at i:33186144 original size:46 final size:46
Alignment explanation
Indices: 33186075--33186211 Score: 142
Period size: 42 Copynumber: 3.1 Consensus size: 46
33186065 CAGAAATAAA
** ** *
33186075 CGCCGCTAAAGGTCATGTTCTTTAACGGCGCTTTTACAACAAACGC
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACAACAAACGC
*
33186121 CGCCGCTAAAGAACATGACCTTTAGCGGCGC--ATACCAACAAA---
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTA-CAACAAACGC
* *
33186163 CGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCT-CCACAAACGC
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTT-TACAACAAACGC
33186209 CGC
1 CGC
33186212 TAAAAGTAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
42 30 0.40
43 6 0.08
44 2 0.03
45 8 0.11
46 29 0.39
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.20
Consensus pattern (46 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACAACAAACGC
Found at i:33186177 original size:42 final size:43
Alignment explanation
Indices: 33186121--33186215 Score: 147
Period size: 42 Copynumber: 2.2 Consensus size: 43
33186111 CAACAAACGC
*
33186121 CGCCGCTAAAGAACATGACCTTTAGCGGCGCATAC-CAACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCACATACTCAACAAA
* * *
33186163 CGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCTCCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCACATACTCAACAAA
33186206 CGCCGCTAAA
1 CGCCGCTAAA
33186216 AGTAATATTC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
42 32 0.67
43 16 0.33
ACGTcount: A:0.33, C:0.33, G:0.18, T:0.17
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGCACATACTCAACAAA
Found at i:33187633 original size:10 final size:10
Alignment explanation
Indices: 33187618--33187642 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
33187608 TAACATTCAA
33187618 AACATAGCTT
1 AACATAGCTT
33187628 AACATAGCTT
1 AACATAGCTT
33187638 AACAT
1 AACAT
33187643 TCAAAACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (10 bp):
AACATAGCTT
Found at i:33187642 original size:45 final size:44
Alignment explanation
Indices: 33187584--33187687 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 44
33187574 TGAAGAAACT
*
33187584 CATATGCTTAACATTC-AAA-ATGTTTAACATTCAAAACATAGCTTAA
1 CATA-GCTTAACATTCAAAACATGCTTAACATTC-AAA-AT-GCTTAA
*
33187630 CATAGCTTAACATTCAAAACTATGCTTAACATTCAAAATGTTTAA
1 CATAGCTTAACATTCAAAAC-ATGCTTAACATTCAAAATGCTTAA
33187675 CATAGCTTAACAT
1 CATAGCTTAACAT
33187688 AGTTTTCAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
45 29 0.55
46 9 0.17
47 3 0.06
48 12 0.23
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (44 bp):
CATAGCTTAACATTCAAAACATGCTTAACATTCAAAATGCTTAA
Found at i:33187676 original size:16 final size:18
Alignment explanation
Indices: 33187587--33187667 Score: 65
Period size: 19 Copynumber: 4.9 Consensus size: 18
33187577 AGAAACTCAT
33187587 ATGCTTAACATTC-AAA-
1 ATGCTTAACATTCAAAAC
*
33187603 ATGTTTAACATTCAAAAC
1 ATGCTTAACATTCAAAAC
33187621 ATAGCTTAACA-T------
1 AT-GCTTAACATTCAAAAC
33187633 A-GCTTAACATTCAAAAC
1 ATGCTTAACATTCAAAAC
33187650 TATGCTTAACATTCAAAA
1 -ATGCTTAACATTCAAAA
33187668 TGTTTAACAT
Statistics
Matches: 51, Mismatches: 2, Indels: 21
0.69 0.03 0.28
Matches are distributed among these distances:
10 8 0.16
11 1 0.02
12 1 0.02
16 12 0.24
17 3 0.06
18 4 0.08
19 22 0.43
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (18 bp):
ATGCTTAACATTCAAAAC
Found at i:33189840 original size:21 final size:21
Alignment explanation
Indices: 33189793--33189843 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
33189783 CTAAAGCGGC
* * *
33189793 CTAAACCCCAAACCCCAAACT
1 CTAAACCTCAAACCCAAAACA
*
33189814 CTTAAACCTTAAACCCAAAACA
1 C-TAAACCTCAAACCCAAAACA
33189836 CTAAACCT
1 CTAAACCT
33189844 ACATCATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (21 bp):
CTAAACCTCAAACCCAAAACA
Found at i:33189868 original size:27 final size:27
Alignment explanation
Indices: 33189823--33189876 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
33189813 TCTTAAACCT
*
33189823 TAAACCCAAAACACTAAAC-CTACATCA
1 TAAACCCAAAACACAAAACTCTA-ATCA
* *
33189850 TAAACCCTAAACTCAAAACTCTAATCA
1 TAAACCCAAAACACAAAACTCTAATCA
33189877 CAAAATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (27 bp):
TAAACCCAAAACACAAAACTCTAATCA
Found at i:33190010 original size:20 final size:20
Alignment explanation
Indices: 33189982--33190022 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
33189972 ACTCTCAAAC
33189982 CCTAAATCGAAAACACTAAA
1 CCTAAATCGAAAACACTAAA
* * *
33190002 CCTACATCGTAAACCCTAAA
1 CCTAAATCGAAAACACTAAA
33190022 C
1 C
33190023 TCAAAAATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.32, G:0.05, T:0.17
Consensus pattern (20 bp):
CCTAAATCGAAAACACTAAA
Found at i:33192440 original size:29 final size:29
Alignment explanation
Indices: 33192408--33192477 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
33192398 ACGATGTTAG
*
33192408 CTTGTGTGAGCAA-ATTTATAAAATGTCAA
1 CTTGTGTGAGCAAGATTCAT-AAATGTCAA
* *
33192437 CTTGTGTGA-AAAGATTCATAAATGTCAG
1 CTTGTGTGAGCAAGATTCATAAATGTCAA
*
33192465 CTTGTATGAGCAA
1 CTTGTGTGAGCAA
33192478 CCCTGACCAC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
28 18 0.53
29 16 0.47
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (29 bp):
CTTGTGTGAGCAAGATTCATAAATGTCAA
Found at i:33192468 original size:28 final size:29
Alignment explanation
Indices: 33192401--33192474 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
33192391 CATTGATACG
* * *
33192401 ATGTTAGCTTGTGTGAGCAAATTTATAAA
1 ATGTCAGCTTGTGTGAGAAAATTCATAAA
*
33192430 ATGTCAACTTGTGTGA-AAAGATTCAT-AA
1 ATGTCAGCTTGTGTGAGAAA-ATTCATAAA
*
33192458 ATGTCAGCTTGTATGAG
1 ATGTCAGCTTGTGTGAG
33192475 CAACCCTGAC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
28 18 0.49
29 19 0.51
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (29 bp):
ATGTCAGCTTGTGTGAGAAAATTCATAAA
Found at i:33193959 original size:98 final size:98
Alignment explanation
Indices: 33193790--33193968 Score: 286
Period size: 98 Copynumber: 1.8 Consensus size: 98
33193780 CAAAATTGAA
* * * *
33193790 TATTAAATTTAGCTATTTCCAAAATTTAATGCGACAGACATACTATCACATGTGAAATACCATGT
1 TATTAAATTTAACTATTTCCAAAATTTAATGCGACAAACATACTAACACATATGAAATACCATGT
33193855 CAACTTATTGTTTCCAAAGTTGGATATTAAGTT
66 CAACTTATTGTTTCCAAAGTTGGATATTAAGTT
* * * *
33193888 TATTAAGTTTAACTATTTCCAAAATTTAATGTGATAAACATATTAACACATATGAAATACCATGT
1 TATTAAATTTAACTATTTCCAAAATTTAATGCGACAAACATACTAACACATATGAAATACCATGT
33193953 CAACTTATTGTTTCCA
66 CAACTTATTGTTTCCA
33193969 CATATTACTC
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 73 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (98 bp):
TATTAAATTTAACTATTTCCAAAATTTAATGCGACAAACATACTAACACATATGAAATACCATGT
CAACTTATTGTTTCCAAAGTTGGATATTAAGTT
Found at i:33194431 original size:19 final size:19
Alignment explanation
Indices: 33194409--33194446 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
33194399 CTTTTAATAA
*
33194409 TTTTT-AATTTTTATAATT
1 TTTTTGAATTTTTAAAATT
33194427 TTTTTGAATTTTTAAAATT
1 TTTTTGAATTTTTAAAATT
33194446 T
1 T
33194447 AATAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTGAATTTTTAAAATT
Found at i:33196686 original size:2 final size:2
Alignment explanation
Indices: 33196679--33196703 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33196669 CTATATTCTG
33196679 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
33196704 CACACACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33199464 original size:7 final size:7
Alignment explanation
Indices: 33199429--33199460 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
33199419 CAACATATTA
33199429 AAAATAT
1 AAAATAT
33199436 AAAATAT
1 AAAATAT
33199443 AAAATAT
1 AAAATAT
33199450 AAAAT-T
1 AAAATAT
33199456 AAAAT
1 AAAAT
33199461 TTAATTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATAT
Found at i:33201728 original size:27 final size:27
Alignment explanation
Indices: 33201693--33201754 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
33201683 ATAGTAATGA
33201693 GATTAAA-TTA-TCTTTTTATTATTAAAT
1 GATTAAATTTAGT-TTTTTA-TATTAAAT
* *
33201720 GATTTAATTTAGTTTTTTATATTAAAA
1 GATTAAATTTAGTTTTTTATATTAAAT
*
33201747 GAATAAAT
1 GATTAAAT
33201755 AAGGTAGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
27 19 0.66
28 9 0.31
29 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (27 bp):
GATTAAATTTAGTTTTTTATATTAAAT
Found at i:33204391 original size:22 final size:22
Alignment explanation
Indices: 33204365--33204410 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
33204355 TGAAGATCTA
*
33204365 TAATCTT-AGAAGATTTGATTTG
1 TAATCTTAAG-AGATTTAATTTG
33204387 TAATCTTAAGAGATTTAATTTG
1 TAATCTTAAGAGATTTAATTTG
33204409 TA
1 TA
33204411 GATTGCCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (22 bp):
TAATCTTAAGAGATTTAATTTG
Found at i:33209274 original size:27 final size:27
Alignment explanation
Indices: 33209239--33210006 Score: 774
Period size: 27 Copynumber: 28.6 Consensus size: 27
33209229 GGTTTGGGTC
*
33209239 GTAAAATTACCGAAATACCCTTGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
**
33209266 GTAAAATTACTAAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
33209293 GTAGAATGACCGAAATACCATCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
33209320 GTAAAATTACTGAAATACCCCCGAAGG
1 GTAAAATTACCGAAATACCCTCGATGG
* * * * **
33209347 ATAAAATTATCGAAATACCTTTGAAAG
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
33209374 GTAAAATTACTGAAATACCCTTGAAGG
1 GTAAAATTACCGAAATACCCTCGATGG
*** * *
33209401 GTAAAATTATTAAAATACCCTTGAAGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
33209428 GTAAAATTACTGAAATACCC-CTGAAGG
1 GTAAAATTACCGAAATACCCTC-GATGG
*
33209455 GTAAAATTACCTAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
** *
33209482 GTAAAATTACTAAAATACCATCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
*
33209509 GTAAAATTACCGAAATACCC-CGAAGG
1 GTAAAATTACCGAAATACCCTCGATGG
* ** * * *
33209535 GTAAAATGACTAAAATACCCCCAAAGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
33209562 GTAAAATGACCAAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
** *
33209589 GTAAAA-TACTAAAATGCCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
33209615 GTAAAATGATCGAAATACCCTCAATGG
1 GTAAAATTACCGAAATACCCTCGATGG
** * *
33209642 GTAAAATTACTAAAATACCTTCGAAGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
33209669 GTAAAATGACCGAAATACCC-CTGATAG
1 GTAAAATTACCGAAATACCCTC-GATGG
** *
33209696 GTAAAATTACTAAAATACCCTTGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
33209723 GTAAAATGACCGAAATACCCTTGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
*
33209750 GTAAAATGACCGAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
33209777 GTAAAATTATCGAAATACCATCGAT-G
1 GTAAAATTACCGAAATACCCTCGATGG
33209803 GTAAAATTACCGAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
33209830 GTAAAATTATCGAAATA-CCTGCAAAGG
1 GTAAAATTACCGAAATACCCT-CGATGG
* ** *
33209857 GTAAAATGACTAAAATACCCTTGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
33209884 GTAAAATTATCAAAATACCCTTGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
33209911 GTAAAATTATCAAAATACCCTCGAAGG
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
33209938 GTAAAATGACCAAAATACCCTTGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
33209965 GTAAAATTACTGAAATACCCTCAATGG
1 GTAAAATTACCGAAATACCCTCGATGG
*
33209992 GTAAAATTACTGAAA
1 GTAAAATTACCGAAA
33210007 CACCTTTGAA
Statistics
Matches: 623, Mismatches: 109, Indels: 18
0.83 0.15 0.02
Matches are distributed among these distances:
26 73 0.12
27 546 0.88
28 4 0.01
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTCGATGG
Found at i:33209319 original size:54 final size:54
Alignment explanation
Indices: 33209239--33210006 Score: 866
Period size: 54 Copynumber: 14.3 Consensus size: 54
33209229 GGTTTGGGTC
*
33209239 GTAAAATTACCGAAATACCCTTGATGGGTAAAATTACTAAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
* * * * * *
33209293 GTAGAATGACCGAAATACCATCGATGGGTAAAATTACTGAAATACCCCCGAAGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
* * * * ** * * *
33209347 ATAAAATTATCGAAATACCTTTGAAAGGTAAAATTACTGAAATACCCTTGAAGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
*** * * * *
33209401 GTAAAATTATTAAAATACCCTTGAAGGGTAAAATTACTGAAATACCC-CTGAAGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTC-GATGG
* *
33209455 GTAAAATTACCTAAATACCCTCGATGGGTAAAATTACTAAAATACCATCGATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
* * * * *
33209509 GTAAAATTACCGAAATACCC-CGAAGGGTAAAATGACTAAAATACCCCCAAAGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
* * *
33209562 GTAAAATGACCAAAATACCCTCGATGGGTAAAA-TACTAAAATGCCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
* * * * *
33209615 GTAAAATGATCGAAATACCCTCAATGGGTAAAATTACTAAAATACCTTCGAAGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
* * *
33209669 GTAAAATGACCGAAATACCC-CTGATAGGTAAAATTACTAAAATACCCTTGATGG
1 GTAAAATTACCGAAATACCCTC-GATGGGTAAAATTACTAAAATACCCTCGATGG
* * * **
33209723 GTAAAATGACCGAAATACCCTTGATGGGTAAAATGACCGAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
* * **
33209777 GTAAAATTATCGAAATACCATCGAT-GGTAAAATTACCGAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
* * * * *
33209830 GTAAAATTATCGAAATA-CCTGCAAAGGGTAAAATGACTAAAATACCCTTGATGG
1 GTAAAATTACCGAAATACCCT-CGATGGGTAAAATTACTAAAATACCCTCGATGG
* * * *
33209884 GTAAAATTATCAAAATACCCTTGATGGGTAAAATTA-TCAAAATACCCTCGAAGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACT-AAAATACCCTCGATGG
* * * * *
33209938 GTAAAATGACCAAAATACCCTTGATGGGTAAAATTACTGAAATACCCTCAATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
*
33209992 GTAAAATTACTGAAA
1 GTAAAATTACCGAAA
33210007 CACCTTTGAA
Statistics
Matches: 612, Mismatches: 91, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
52 2 0.00
53 138 0.23
54 467 0.76
55 5 0.01
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (54 bp):
GTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCGATGG
Found at i:33210276 original size:26 final size:26
Alignment explanation
Indices: 33210247--33210349 Score: 136
Period size: 26 Copynumber: 4.0 Consensus size: 26
33210237 TTTGCCACAA
*
33210247 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
* *
33210273 ATACTGA-TACTGGCAGCTCTGCTACG
1 ATACT-ATTACTGGCAGCTTTGCTGCG
* *
33210299 TTACTATTACTGGCAGCTTTGCTGTG
1 ATACTATTACTGGCAGCTTTGCTGCG
*
33210325 TTACTATTACTGGCAGCTTTGCTGC
1 ATACTATTACTGGCAGCTTTGCTGC
33210350 AATATTGATG
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.01
26 66 0.99
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:33210501 original size:28 final size:29
Alignment explanation
Indices: 33210470--33210534 Score: 87
Period size: 28 Copynumber: 2.2 Consensus size: 29
33210460 GATTACTATT
* *
33210470 TTGGGCTAACGCCCACACTGT-TACTGTA
1 TTGGGCTAACGCCCACACTCTATAATGTA
*
33210498 TTGGGCTAAGGCCCACACTCTAATAATGTA
1 TTGGGCTAACGCCCACACTCT-ATAATGTA
33210528 TTGGGCT
1 TTGGGCT
33210535 TTGGCCCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 19 0.59
30 13 0.41
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (29 bp):
TTGGGCTAACGCCCACACTCTATAATGTA
Found at i:33210530 original size:30 final size:28
Alignment explanation
Indices: 33210470--33210572 Score: 98
Period size: 30 Copynumber: 3.5 Consensus size: 28
33210460 GATTACTATT
* *
33210470 TTGGGCTAACGCCCACACTGTTACTGTA
1 TTGGGCTAAGGCCCACACTCTTACTGTA
*
33210498 TTGGGCTAAGGCCCACACTCTAATAATGTA
1 TTGGGCTAAGGCCCACACTCT--TACTGTA
** *
33210528 TTGGGCTTTGGCCCACACACTGCTACTGTA
1 TTGGGCTAAGGCCCACACTCT--TACTGTA
* *
33210558 TAGGGCTCAGGCCCA
1 TTGGGCTAAGGCCCA
33210573 GACTGATTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 19 0.31
30 42 0.69
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.26
Consensus pattern (28 bp):
TTGGGCTAAGGCCCACACTCTTACTGTA
Found at i:33214004 original size:21 final size:21
Alignment explanation
Indices: 33213980--33214022 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
33213970 CACAAGGTTA
33213980 ACAAGC-ACAAACAATAATAAT
1 ACAAGCAAC-AACAATAATAAT
* *
33214001 ACAAGTAACAATAATAATAAT
1 ACAAGCAACAACAATAATAAT
33214022 A
1 A
33214023 TGAGTGACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.63, C:0.14, G:0.05, T:0.19
Consensus pattern (21 bp):
ACAAGCAACAACAATAATAAT
Found at i:33215694 original size:44 final size:44
Alignment explanation
Indices: 33215646--33215843 Score: 172
Period size: 44 Copynumber: 4.6 Consensus size: 44
33215636 AATCCGCTCT
* ** *
33215646 ACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTACTCC
1 ACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTACTCC
*
33215690 ACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTGCTCC
1 ACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTACTCC
* * * *
33215734 ACTGCAACTTCAGGGAGATAAGACTAG-A--TGTGA-TCTACTCT
1 ACTGCAACTTCAGGGAGATAGGATTAGTAGCT-TCAGTCTACTCC
* * * * * * **
33215775 ACTGCAACTTCAGAGAGATAAGATCT-GTGGTTTTAATCCGCTCC
1 ACTGCAACTTCAGGGAGATAGGAT-TAGTAGCTTCAGTCTACTCC
* *
33215819 ACTGCAACTTCAGTGAGATATGATT
1 ACTGCAACTTCAGGGAGATAGGATT
33215844 CGCCATTACG
Statistics
Matches: 129, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
41 30 0.23
42 3 0.02
43 4 0.03
44 92 0.71
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTACTCC
Found at i:33215793 original size:85 final size:85
Alignment explanation
Indices: 33215682--33215838 Score: 217
Period size: 85 Copynumber: 1.8 Consensus size: 85
33215672 GTTTCTTCTG
* * * *
33215682 TCTACTCCACTGCAACTTCAGGGAGATAGGAT-TAGTAGCTTCAGTCTGCTCCACTGCAACTTCA
1 TCTACTCCACTGCAACTTCAGAGAGATAAGATCT-GTAGCTTCAATCCGCTCCACTGCAACTTCA
33215746 GGGAGATAAGACTAGATGTGA
65 GGGAGATAAGACTAGATGTGA
* * * *
33215767 TCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAG
1 TCTACTCCACTGCAACTTCAGAGAGATAAGATCTGTAGCTTCAATCCGCTCCACTGCAACTTCAG
*
33215832 TGAGATA
66 GGAGATA
33215839 TGATTCGCCA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 61 0.98
86 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (85 bp):
TCTACTCCACTGCAACTTCAGAGAGATAAGATCTGTAGCTTCAATCCGCTCCACTGCAACTTCAG
GGAGATAAGACTAGATGTGA
Found at i:33215976 original size:50 final size:50
Alignment explanation
Indices: 33215891--33216451 Score: 285
Period size: 50 Copynumber: 11.3 Consensus size: 50
33215881 ATTCGCAGTC
* * * * * *
33215891 GTAGCTTTAATCTATTCCACTGCACTGCCAAGGAAGTAAGATTCACCGTT
1 GTAGCTTCAATCTTTTCAATTGCAATGCCAGGGAAGTAAGATTCACCGTT
** * *** * *
33215941 GCGGCTTCAATCTTTTAAATTGCAATATTAGGGAAGTAAGATTCACCATC
1 GTAGCTTCAATCTTTTCAATTGCAATGCCAGGGAAGTAAGATTCACCGTT
* ** * * * * *
33215991 GTAGCTTTAATCTGCTCCATTGTACTGCCAGGGAAGTGAGATTCGCCGTT
1 GTAGCTTCAATCTTTTCAATTGCAATGCCAGGGAAGTAAGATTCACCGTT
* * * *
33216041 GTTGCTTCAATCCTTTT-AATTGCAATGTCGGGGAA-TAAGATTCGCCGTT
1 GTAGCTTCAAT-CTTTTCAATTGCAATGCCAGGGAAGTAAGATTCACCGTT
** * * *
33216090 GTAGCTTCAATCTGATCCACTGC-ATCGCCAGGAAAGTAAGATTCACCGTT
1 GTAGCTTCAATCTTTTCAATTGCAAT-GCCAGGGAAGTAAGATTCACCGTT
** * * * * * * *
33216140 GCGGCTTCAATATTTTTAATTGCAATGTCGGGGAAGAAAGATTCGCCGTC
1 GTAGCTTCAATCTTTTCAATTGCAATGCCAGGGAAGTAAGATTCACCGTT
* * * * *** * * *
33216190 GTAGCTTTAAT-TTGCTCCACTGCACCACCAGGAAAGTAAGATTCGCCATT
1 GTAGCTTCAATCTT-TTCAATTGCAATGCCAGGGAAGTAAGATTCACCGTT
** * * * *
33216240 GCGGCTTCAATATTTTAAATTGCAATGTCGGGGAACG--AGATTCACCGTT
1 GTAGCTTCAATCTTTTCAATTGCAATGCCAGGGAA-GTAAGATTCACCGTT
** * * * * * *
33216289 GTAGCTTCAATCTAATCCACTG-TATCACCAGGAAAGTAAAATTCACCGTT
1 GTAGCTTCAATCTTTTCAATTGCAAT-GCCAGGGAAGTAAGATTCACCGTT
** * * * *
33216339 GCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAACG--AGATTCGCCGTT
1 GTAGCTTCAATCTTTTCAATTGCAATGCCAGGGAA-GTAAGATTCACCGTT
* * * * * * **
33216388 GTAGCTTCAATCTGTTCCACTGCACTGCCAGAGAGGTAAGATTCGTCGTT
1 GTAGCTTCAATCTTTTCAATTGCAATGCCAGGGAAGTAAGATTCACCGTT
**
33216438 GCGGCTTCAATCTT
1 GTAGCTTCAATCTT
33216452 CTTTGCTGCA
Statistics
Matches: 359, Mismatches: 137, Indels: 30
0.68 0.26 0.06
Matches are distributed among these distances:
48 9 0.03
49 98 0.27
50 241 0.67
51 11 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (50 bp):
GTAGCTTCAATCTTTTCAATTGCAATGCCAGGGAAGTAAGATTCACCGTT
Found at i:33216137 original size:199 final size:198
Alignment explanation
Indices: 33215859--33216449 Score: 751
Period size: 199 Copynumber: 3.0 Consensus size: 198
33215849 TTACGACCTC
* * * * * *
33215859 AATTACAATGTCAGGGAACACGATTCGCAGTCGTAGCTTTAATCTATTCCACTGCA-CTGCCAAG
1 AATTGCAATGTCGGGGAACAAGATTCGCCGTTGTAGCTTCAATCTA-TCCACTGCATC-GCC-AG
* ** *
33215923 G-AAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATATTAGGGAAGTAAGATTCAC
63 GAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAG-AAGATTCGC
* * * * **
33215987 CATCGTAGCTTTAATCTGCTCCATTGTACTGCCAGGGAAGTGAGATTCGCCGTTGTTGCTTCAAT
127 CGTCGTAGCTTTAATCTGCTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGCGGCTTCAAT
*
33216052 CCTTTT-
192 CATTTTA
*
33216058 AATTGCAATGTCGGGGAATAAGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGA
1 AATTGCAATGTCGGGGAACAAGATTCGCCGTTGTAGCTTCAATCT-ATCCACTGCATCGCCAGGA
* *
33216123 AAGTAAGATTCACCGTTGCGGCTTCAATATTTTTAATTGCAATGTCGGGGAAGAAAGATTCGCCG
65 AAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAG-AAGATTCGCCG
* ** * *
33216188 TCGTAGCTTTAATTTGCTCCACTGCACCACCAGGAAAGTAAGATTCGCCATTGCGGCTTCAAT-A
129 TCGTAGCTTTAATCTGCTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGCGGCTTCAATCA
33216252 TTTTA
194 TTTTA
* * * *
33216257 AATTGCAATGTCGGGGAACGAGATTCACCGTTGTAGCTTCAATCTAATCCACTGTATCACCAGGA
1 AATTGCAATGTCGGGGAACAAGATTCGCCGTTGTAGCTTCAATCT-ATCCACTGCATCGCCAGGA
*
33216322 AAGTAAAATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAACG-AGATTCGCCG
65 AAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAA-GAAGATTCGCCG
* * * * * *
33216386 TTGTAGCTTCAATCTGTTCCACTGCACTGCCAGAGAGGTAAGATTCGTCGTTGCGGCTTCAATC
129 TCGTAGCTTTAATCTGCTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGCGGCTTCAATC
33216450 TTCTTTGCTG
Statistics
Matches: 340, Mismatches: 46, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
198 69 0.20
199 268 0.79
200 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (198 bp):
AATTGCAATGTCGGGGAACAAGATTCGCCGTTGTAGCTTCAATCTATCCACTGCATCGCCAGGAA
AGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGAAGATTCGCCGTC
GTAGCTTTAATCTGCTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGCGGCTTCAATCATT
TTA
Found at i:33216462 original size:99 final size:99
Alignment explanation
Indices: 33215859--33216451 Score: 646
Period size: 99 Copynumber: 6.0 Consensus size: 99
33215849 TTACGACCTC
* * * *
33215859 AATTACAATGTCAGGGAAC-ACGATTCGCAGTCGTAGCTTTAATCT-ATTCCACTGCACTGCCAA
1 AATTGCAATGTCGGGGAACGA-GATTCGCCGTCGTAGCTTCAATCTGA-TCCACTGCACTGCC-A
33215922 GG-AAGTAAGATTCACCGTTGCGGCTTCAATCTTTTA
63 GGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTA
* ** * * * * * *
33215958 AATTGCAATATTAGGGAA-GTAAGATTCACCATCGTAGCTTTAATCTGCTCCATTGTACTGCCAG
1 AATTGCAATGTCGGGGAACG--AGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCACTGCCAG
* * * **
33216022 GGAAGTGAGATTCGCCGTTGTTGCTTCAATCCTTTT-
64 GAAAGTAAGATTCACCGTTGCGGCTTCAAT-CTTTTA
** *
33216058 AATTGCAATGTCGGGGAATAAGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCA-TCGCCAGG
1 AATTGCAATGTCGGGGAACGAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCACT-GCCAGG
* *
33216122 AAAGTAAGATTCACCGTTGCGGCTTCAATATTTTT
65 AAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTA
* * * **
33216157 AATTGCAATGTCGGGGAA-GAAAGATTCGCCGTCGTAGCTTTAATTTGCTCCACTGCACCACCAG
1 AATTGCAATGTCGGGGAACG--AGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCACTGCCAG
* * *
33216221 GAAAGTAAGATTCGCCATTGCGGCTTCAATATTTTA
64 GAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTA
* * * * *
33216257 AATTGCAATGTCGGGGAACGAGATTCACCGTTGTAGCTTCAATCTAATCCACTGTA-TCACCAGG
1 AATTGCAATGTCGGGGAACGAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCACT-GCCAGG
*
33216321 AAAGTAAAATTCACCGTTGCGGCTTCAATCTTTTA
65 AAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTA
* *
33216356 AATTGCAATGTCGGGGAACGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA-GA
1 AATTGCAATGTCGGGGAACGAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCACTGCCAGGA
* **
33216420 GAGGTAAGATTCGTCGTTGCGGCTTCAATCTT
66 -AAGTAAGATTCACCGTTGCGGCTTCAATCTT
33216452 CTTTGCTGCA
Statistics
Matches: 417, Mismatches: 61, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
98 7 0.02
99 243 0.58
100 160 0.38
101 7 0.02
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (99 bp):
AATTGCAATGTCGGGGAACGAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCACTGCCAGGA
AAGTAAGATTCACCGTTGCGGCTTCAATCTTTTA
Found at i:33216625 original size:90 final size:90
Alignment explanation
Indices: 33216472--33216742 Score: 416
Period size: 90 Copynumber: 3.0 Consensus size: 90
33216462 AACTATGGTG
* *** * **
33216472 TCTTCGATCTGCTTCGCCATCAATACATGAAGGTAAGATCTGTTATCTTCAGTCTACTTCGCTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCAGTCTACTTCGCTGC
*
33216537 CAATACAGGAAGACAAGACTTACTA
66 CAATACAGGAAGACAAGACTTGCTA
* *
33216562 TCTTCGATCTACTTCTCTGCCAATACAGGAAGACAAGATCAGTTATCTTCAGTCTACTTCGCTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCAGTCTACTTCGCTGC
*
33216627 CAATACAGGAACACAAGACTTGCTA
66 CAATACAGGAAGACAAGACTTGCTA
* * *
33216652 TCTTCGATCTACTTCGCTGCTAATACAGGAAGACAAGATCTGCTACCTTCAGTCTACTTCGCTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCAGTCTACTTCGCTGC
33216717 CAATACAGGAAGACAAGACTTGCTA
66 CAATACAGGAAGACAAGACTTGCTA
33216742 T
1 T
33216743 GATGACTTCA
Statistics
Matches: 164, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 164 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (90 bp):
TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCAGTCTACTTCGCTGC
CAATACAGGAAGACAAGACTTGCTA
Found at i:33216741 original size:45 final size:45
Alignment explanation
Indices: 33216515--33216742 Score: 329
Period size: 45 Copynumber: 5.1 Consensus size: 45
33216505 TAAGATCTGT
*
33216515 TATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTAC
1 TATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGC
* * *
33216560 TATCTTC-GATCTACTTCTCTGCCAATACAGGAAGACAAGA-TCAGT
1 TATCTTCAG-TCTACTTCGCTGCCAATACAGGAAGACAAGACT-TGC
*
33216605 TATCTTCAGTCTACTTCGCTGCCAATACAGGAACACAAGACTTGC
1 TATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGC
*
33216650 TATCTTC-GATCTACTTCGCTGCTAATACAGGAAGACAAGA-TCTGC
1 TATCTTCAG-TCTACTTCGCTGCCAATACAGGAAGACAAGACT-TGC
*
33216695 TACCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGC
1 TATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGC
33216740 TAT
1 TAT
33216743 GATGACTTCA
Statistics
Matches: 162, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
44 4 0.02
45 154 0.95
46 4 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (45 bp):
TATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGC
Found at i:33217687 original size:15 final size:16
Alignment explanation
Indices: 33217663--33217703 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
33217653 CCTTTTTCTT
33217663 TTTCTTTTTCGTTTT-G
1 TTTCTTTTTC-TTTTCG
33217679 TTT-TTTTTCTTTTCG
1 TTTCTTTTTCTTTTCG
33217694 TTTCTTTTTC
1 TTTCTTTTTC
33217704 AAGTGAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.17
15 10 0.43
16 9 0.39
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.78
Consensus pattern (16 bp):
TTTCTTTTTCTTTTCG
Found at i:33217702 original size:20 final size:20
Alignment explanation
Indices: 33217655--33217702 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
33217645 TGGCCTCTCC
*
33217655 TTTTTCTTTTTCTTTTTCGT
1 TTTTTTTTTTTCTTTTTCGT
33217675 TTTGTTTTTTTTC-TTTTCGT
1 TTT-TTTTTTTTCTTTTTCGT
*
33217695 TTCTTTTT
1 TTTTTTTT
33217703 CAAGTGAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.20
20 12 0.48
21 8 0.32
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.81
Consensus pattern (20 bp):
TTTTTTTTTTTCTTTTTCGT
Found at i:33218142 original size:1 final size:1
Alignment explanation
Indices: 33218136--33218213 Score: 57
Period size: 1 Copynumber: 78.0 Consensus size: 1
33218126 CCGGTAGAGG
* * * * * * * * * *
33218136 TTTTTTTGTTTTTTTATTTTTTTATTTTCTTGTTTTCTTTTTTTGTTTTTTTGTTTTTTTTTGTA
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
33218201 TTTTTGTTTTTTT
1 TTTTTTTTTTTTT
33218214 CTCAACAGAA
Statistics
Matches: 55, Mismatches: 22, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.04, C:0.03, G:0.08, T:0.86
Consensus pattern (1 bp):
T
Found at i:33218148 original size:8 final size:8
Alignment explanation
Indices: 33218135--33218213 Score: 74
Period size: 8 Copynumber: 10.0 Consensus size: 8
33218125 CCCGGTAGAG
33218135 GTTTTTTT
1 GTTTTTTT
33218143 GTTTTTTT
1 GTTTTTTT
*
33218151 ATTTTTTT
1 GTTTTTTT
* *
33218159 ATTTTCTT
1 GTTTTTTT
33218167 G---TTTT
1 GTTTTTTT
*
33218172 CTTTTTTT
1 GTTTTTTT
33218180 GTTTTTTT
1 GTTTTTTT
33218188 GTTTTTTTTT
1 G--TTTTTTT
*
33218198 GTATTTTT
1 GTTTTTTT
33218206 GTTTTTTT
1 GTTTTTTT
33218214 CTCAACAGAA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
5 3 0.05
8 47 0.81
10 8 0.14
ACGTcount: A:0.04, C:0.03, G:0.09, T:0.85
Consensus pattern (8 bp):
GTTTTTTT
Found at i:33218171 original size:21 final size:20
Alignment explanation
Indices: 33218147--33218213 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 20
33218137 TTTTTTGTTT
33218147 TTTTATTTTTTTATTTTCTTG
1 TTTT-TTTTTTTATTTTCTTG
* *
33218168 TTTTCTTTTTTTGTTTTTTTG
1 TTTT-TTTTTTTATTTTCTTG
*
33218189 TTTTTTTTTGTA-TTT-TTG
1 TTTTTTTTTTTATTTTCTTG
33218207 TTTTTTT
1 TTTTTTT
33218214 CTCAACAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
18 10 0.24
19 3 0.07
20 6 0.15
21 22 0.54
ACGTcount: A:0.04, C:0.03, G:0.07, T:0.85
Consensus pattern (20 bp):
TTTTTTTTTTTATTTTCTTG
Found at i:33229206 original size:15 final size:15
Alignment explanation
Indices: 33229194--33229247 Score: 108
Period size: 15 Copynumber: 3.6 Consensus size: 15
33229184 TGTATTTTTG
33229194 CTGTTCGAGTTTTCA
1 CTGTTCGAGTTTTCA
33229209 CTGTTCGAGTTTTCA
1 CTGTTCGAGTTTTCA
33229224 CTGTTCGAGTTTTCA
1 CTGTTCGAGTTTTCA
33229239 CTGTTCGAG
1 CTGTTCGAG
33229248 GTAAGTCTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 39 1.00
ACGTcount: A:0.13, C:0.20, G:0.22, T:0.44
Consensus pattern (15 bp):
CTGTTCGAGTTTTCA
Found at i:33231380 original size:41 final size:41
Alignment explanation
Indices: 33231332--33231413 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
33231322 TTTAAATTTA
33231332 TATATAAATGTATTCGGTTGAATCATTGAATTATCAAGTTT
1 TATATAAATGTATTCGGTTGAATCATTGAATTATCAAGTTT
33231373 TATATAAATGTATTCGGTTGAATCATTGAATTATCAAGTTT
1 TATATAAATGTATTCGGTTGAATCATTGAATTATCAAGTTT
33231414 GGAATTGGTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (41 bp):
TATATAAATGTATTCGGTTGAATCATTGAATTATCAAGTTT
Found at i:33231605 original size:41 final size:40
Alignment explanation
Indices: 33231560--33231707 Score: 138
Period size: 41 Copynumber: 3.6 Consensus size: 40
33231550 CAGGCTCAGC
*
33231560 GCCTAGCAGGTATATTGCCAGTGAA-TCAATTCAGGCGTA-AA
1 GCCTAGCAGGTA-AGTGCCAGTGAACTCAA-TCAGGC-TAGAA
* * *
33231601 GCCTAGCAAGCTAAGTGGCAGTGAACTGAATCAGGCTAGAA
1 GCCTAGC-AGGTAAGTGCCAGTGAACTCAATCAGGCTAGAA
* * * **
33231642 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTTTAA
1 GCCTAGCAGG-TAAGTGCCAGTGAACTCAATCAGGCTAGAA
*
33231683 GCCTAGCAGGCTAAGTGCCGGTGAA
1 GCCTAGCAGG-TAAGTGCCAGTGAA
33231708 TCTGTTTAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
40 4 0.04
41 81 0.88
42 7 0.08
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (40 bp):
GCCTAGCAGGTAAGTGCCAGTGAACTCAATCAGGCTAGAA
Found at i:33239557 original size:41 final size:40
Alignment explanation
Indices: 33239512--33239661 Score: 171
Period size: 41 Copynumber: 3.7 Consensus size: 40
33239502 CAGGCTCAGC
* *
33239512 GCCTAGCAGG-TATATTGCCAGTGAATCAATTCAGGCTTAAA
1 GCCTAGCAGGCTA-AGTGCCGGTGAATCAA-TCAGGCTTAAA
*
33239553 GCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGC-TATAA
1 GCCTAGCAGGCTAAGTGCCGGTGAA-TCAATCAGGCTTA-AA
*
33239594 GCCTAGCAGGCTAAGTGCCGGTG-ATCTGAATCAGGCTTTAA
1 GCCTAGCAGGCTAAGTGCCGGTGAATC--AATCAGGCTTAAA
* *
33239635 GCCTAGCAGGCTAAGTTCTGGTGAATC
1 GCCTAGCAGGCTAAGTGCCGGTGAATC
33239662 TGTTTATGCT
Statistics
Matches: 95, Mismatches: 7, Indels: 13
0.83 0.06 0.11
Matches are distributed among these distances:
39 1 0.01
40 3 0.03
41 82 0.86
42 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
GCCTAGCAGGCTAAGTGCCGGTGAATCAATCAGGCTTAAA
Found at i:33239897 original size:48 final size:48
Alignment explanation
Indices: 33239826--33239927 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
33239816 AAATTGTTGG
* ** *
33239826 ATATATAAATATGTGTATGCATTCGACATGTGTGGATT-ATAAGTATAT
1 ATATATAAATATATGTATGCATTCGACACATGTGG-TTGATAAGTATAA
* *
33239874 ATATATATATATATGTGTGCATTCGACACATGTGGTTGATAAGTATAA
1 ATATATAAATATATGTATGCATTCGACACATGTGGTTGATAAGTATAA
33239922 ATATAT
1 ATATAT
33239928 GCTTTTGACA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.04
48 45 0.96
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (48 bp):
ATATATAAATATATGTATGCATTCGACACATGTGGTTGATAAGTATAA
Found at i:33241703 original size:30 final size:30
Alignment explanation
Indices: 33241639--33241703 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
33241629 CAATAACGTT
* *
33241639 AGTGACTGGTTTGTTAGTTTTCTAAAGTTT
1 AGTGACTGGTTTGTTAGTTTTCTAAACTTG
* *
33241669 AGTGACTGTTTTGTTA-TTTTATCAAACTTG
1 AGTGACTGGTTTGTTAGTTTTCT-AAACTTG
33241699 AGTGA
1 AGTGA
33241704 TTATTGGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 5 0.17
30 25 0.83
ACGTcount: A:0.23, C:0.08, G:0.22, T:0.48
Consensus pattern (30 bp):
AGTGACTGGTTTGTTAGTTTTCTAAACTTG
Found at i:33242942 original size:25 final size:25
Alignment explanation
Indices: 33242900--33242948 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
33242890 TTTCAGAGAA
* *
33242900 TTCACCACAAGGGTTTTACAGATAG
1 TTCACCACAAAGGCTTTACAGATAG
*
33242925 TTCACCACAAAGGCTTTATAGATA
1 TTCACCACAAAGGCTTTACAGATA
33242949 ATATGCCACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (25 bp):
TTCACCACAAAGGCTTTACAGATAG
Found at i:33253286 original size:42 final size:42
Alignment explanation
Indices: 33253221--33253322 Score: 143
Period size: 42 Copynumber: 2.4 Consensus size: 42
33253211 ATTTTGCTTG
**
33253221 GTGCCATACTCAGGCTTTTCTTCCTCTTCTGGCTCTGGTTTA
1 GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTCTGGTTTA
* *
33253263 GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTT
1 GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTCTGGTTTA
*
33253305 GTGCTATAAC-CAGGCTTC
1 GTGCCAT-ACTCAGGCTTC
33253323 TCTGACTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 52 0.96
43 2 0.04
ACGTcount: A:0.11, C:0.29, G:0.21, T:0.39
Consensus pattern (42 bp):
GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTCTGGTTTA
Found at i:33253352 original size:165 final size:165
Alignment explanation
Indices: 33253080--33253749 Score: 1313
Period size: 165 Copynumber: 4.1 Consensus size: 165
33253070 CTTTTCCTTG
* *
33253080 TCTTCTGGCTGTGGTTTAGTACCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTTGTGCT
1 TCTTCTGGCTCTGGTTTAGTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTTGTGCT
33253145 ATAACCAGGCTTCTCTGACTCCTCAGGCATTGCCTTCTCCTTGTCTTCTAGCTCTGGTTTATAGA
66 ATAACCAGGCTTCTCTGACTCCTCAGGCATTGCCTTCTCCTTGTCTTCTAGCTCTGGTTTATAGA
33253210 AATTTTGCTTGGTGCCATACTCAGGCTTTTCTTCC
131 AATTTTGCTTGGTGCCATACTCAGGCTTTTCTTCC
33253245 TCTTCTGGCTCTGGTTTAGTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTTGTGCT
1 TCTTCTGGCTCTGGTTTAGTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTTGTGCT
33253310 ATAACCAGGCTTCTCTGACTCCTCAGGCATTGCCTTCTCCTTGTCTTCTAGCTCTGGTTTATAGA
66 ATAACCAGGCTTCTCTGACTCCTCAGGCATTGCCTTCTCCTTGTCTTCTAGCTCTGGTTTATAGA
33253375 AATTTTGCTTGGTGCCATACTCAGGCTTTTCTTCC
131 AATTTTGCTTGGTGCCATACTCAGGCTTTTCTTCC
33253410 TCTTCTGGCTCTGGTTTAGTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTTGTGCT
1 TCTTCTGGCTCTGGTTTAGTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTTGTGCT
33253475 ATAACCAGGCTTCTCTGACTCCTCAGGCATTGCCTTCTCCTTGTCTTCTAGCTCTGGTTTATAGA
66 ATAACCAGGCTTCTCTGACTCCTCAGGCATTGCCTTCTCCTTGTCTTCTAGCTCTGGTTTATAGA
33253540 AATTTTGCTTGGTGCCATACTCAGGCTTTTCTTCC
131 AATTTTGCTTGGTGCCATACTCAGGCTTTTCTTCC
33253575 TCTTCTGGCTCTGGTTTAGTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTTGTGCT
1 TCTTCTGGCTCTGGTTTAGTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTTGTGCT
33253640 ATAACCAGGCTTCTCTGACTCCTCAGGCATTGCCTTCTCCTTGTCTTCTAGCTCTGGTTTATAGA
66 ATAACCAGGCTTCTCTGACTCCTCAGGCATTGCCTTCTCCTTGTCTTCTAGCTCTGGTTTATAGA
*
33253705 AATTTTGCTTGGTGCCATAATCAGGCTTTTCTTCC
131 AATTTTGCTTGGTGCCATACTCAGGCTTTTCTTCC
33253740 TCTTCTGGCT
1 TCTTCTGGCT
33253750 GTTGTTGGTT
Statistics
Matches: 502, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
165 502 1.00
ACGTcount: A:0.12, C:0.28, G:0.19, T:0.41
Consensus pattern (165 bp):
TCTTCTGGCTCTGGTTTAGTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTTGTGCT
ATAACCAGGCTTCTCTGACTCCTCAGGCATTGCCTTCTCCTTGTCTTCTAGCTCTGGTTTATAGA
AATTTTGCTTGGTGCCATACTCAGGCTTTTCTTCC
Found at i:33253451 original size:42 final size:42
Alignment explanation
Indices: 33253386--33253487 Score: 143
Period size: 42 Copynumber: 2.4 Consensus size: 42
33253376 ATTTTGCTTG
**
33253386 GTGCCATACTCAGGCTTTTCTTCCTCTTCTGGCTCTGGTTTA
1 GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTCTGGTTTA
* *
33253428 GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTT
1 GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTCTGGTTTA
*
33253470 GTGCTATAAC-CAGGCTTC
1 GTGCCAT-ACTCAGGCTTC
33253488 TCTGACTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 52 0.96
43 2 0.04
ACGTcount: A:0.11, C:0.29, G:0.21, T:0.39
Consensus pattern (42 bp):
GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTCTGGTTTA
Found at i:33253616 original size:42 final size:42
Alignment explanation
Indices: 33253551--33253652 Score: 143
Period size: 42 Copynumber: 2.4 Consensus size: 42
33253541 ATTTTGCTTG
**
33253551 GTGCCATACTCAGGCTTTTCTTCCTCTTCTGGCTCTGGTTTA
1 GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTCTGGTTTA
* *
33253593 GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTGTGGTTTT
1 GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTCTGGTTTA
*
33253635 GTGCTATAAC-CAGGCTTC
1 GTGCCAT-ACTCAGGCTTC
33253653 TCTGACTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 52 0.96
43 2 0.04
ACGTcount: A:0.11, C:0.29, G:0.21, T:0.39
Consensus pattern (42 bp):
GTGCCATACTCAGGCTTCCCTTCCTCTTCTGGCTCTGGTTTA
Found at i:33258317 original size:20 final size:21
Alignment explanation
Indices: 33258275--33258318 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
33258265 CCAACGTAAT
*
33258275 ATTTTATTAATATTTTTTATA
1 ATTTTATTAAAATTTTTTATA
33258296 ATTTT-TTAAAATTTTATT-TA
1 ATTTTATTAAAATTTT-TTATA
33258316 ATT
1 ATT
33258319 GAAATTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
ATTTTATTAAAATTTTTTATA
Found at i:33264526 original size:9 final size:9
Alignment explanation
Indices: 33264500--33264546 Score: 60
Period size: 9 Copynumber: 5.3 Consensus size: 9
33264490 TTTGGTTAAA
*
33264500 AATTACCCA
1 AATTACCCG
33264509 AATTACCCG
1 AATTACCCG
33264518 AATTACCCG
1 AATTACCCG
*
33264527 -ATTAACCG
1 AATTACCCG
*
33264535 AATTAACCG
1 AATTACCCG
33264544 AAT
1 AAT
33264547 CACCTGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
8 7 0.20
9 28 0.80
ACGTcount: A:0.40, C:0.28, G:0.09, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:33264535 original size:17 final size:17
Alignment explanation
Indices: 33264500--33264544 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
33264490 TTTGGTTAAA
* *
33264500 AATTACCCAAATTACCCG
1 AATTACCC-GATTAACCG
33264518 AATTACCCGATTAACCG
1 AATTACCCGATTAACCG
*
33264535 AATTAACCGA
1 AATTACCCGA
33264545 ATCACCTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.40, C:0.29, G:0.09, T:0.22
Consensus pattern (17 bp):
AATTACCCGATTAACCG
Found at i:33275720 original size:20 final size:20
Alignment explanation
Indices: 33275683--33275725 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
33275673 CCAATAACCT
*
33275683 ACCTAAGCCCAAATACCCAA
1 ACCTAAGCCCAAACACCCAA
*
33275703 ACCT-AGCCCAAAACACCCCA
1 ACCTAAGCCC-AAACACCCAA
33275723 ACC
1 ACC
33275726 CATTTTCAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.42, C:0.47, G:0.05, T:0.07
Consensus pattern (20 bp):
ACCTAAGCCCAAACACCCAA
Found at i:33276803 original size:3 final size:3
Alignment explanation
Indices: 33276784--33276868 Score: 79
Period size: 3 Copynumber: 29.0 Consensus size: 3
33276774 TATTGTAATA
* * * *
33276784 TAT TAT CAT TCAT TAT TAT TAT TAT TAT TCT TAT CAT TTT TAT TA-
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
33276829 TAT TAT TAT TA- TAT TAT TAT T-T TATT TAT CA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
33276869 ACGATAATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
2 7 0.11
3 53 0.80
4 6 0.09
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:33276845 original size:28 final size:27
Alignment explanation
Indices: 33276782--33276869 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 27
33276772 ATTATTGTAA
*
33276782 TATATTATCA-TTCATTATTATTATTAT
1 TATATTATCATTTTATTA-TATTATTAT
*
33276809 TATTCTTATCATTTTTATTATATTATTAT
1 TA-TATTATCA-TTTTATTATATTATTAT
*
33276838 TATATTATTATTTTATT-TATCATATTAT
1 TATATTATCATTTTATTATAT--TATTAT
33276866 TATA
1 TATA
33276870 CGATAATTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
26 3 0.06
27 9 0.17
28 23 0.44
29 11 0.21
30 6 0.12
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (27 bp):
TATATTATCATTTTATTATATTATTAT
Found at i:33276863 original size:31 final size:32
Alignment explanation
Indices: 33276797--33276868 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 32
33276787 TATCATTCAT
* *
33276797 TATTATTATTATTATTCTTATCATTTTTATTA
1 TATTATTATTATTATTATTATCATTTTTATCA
*
33276829 TATTATTATTA-TATTATTAT-TTTATTTATCA
1 TATTATTATTATTATTATTATCATT-TTTATCA
33276860 TATTATTAT
1 TATTATTAT
33276869 ACGATAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 2 0.06
31 23 0.64
32 11 0.31
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (32 bp):
TATTATTATTATTATTATTATCATTTTTATCA
Found at i:33280353 original size:17 final size:17
Alignment explanation
Indices: 33280333--33280369 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
33280323 TTCAGAAAAG
33280333 AAAAGAAAAAATGA-AGA
1 AAAAGAAAAAA-GAGAGA
33280350 AAAAGAAAAAAGAGAGA
1 AAAAGAAAAAAGAGAGA
33280367 AAA
1 AAA
33280370 TGAGAGGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (17 bp):
AAAAGAAAAAAGAGAGA
Found at i:33281840 original size:100 final size:100
Alignment explanation
Indices: 33281653--33282592 Score: 1213
Period size: 100 Copynumber: 9.4 Consensus size: 100
33281643 ATACCATAGT
*
33281653 TTGCAATTTAAAAGATTGAAGCCACAATGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAG
1 TTGCAA-TTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAG
* *
33281718 ATTGAAGCTACAATGGTGAATCTCGTTTCCCCGACA
65 ATTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
* * ** *
33281754 TTGTAATTAAAAGATTGAAGCCACAA-TGATAGATCTTACTTTCCCAGGCGGTGCAGTGGAACAA
1 TTGCAATTAAAAGATTGAAGCCACAACGGCGA-ATCTTACTTTCCCAGGCGGTGCAGTGGAACAG
* *
33281818 ATTGAAGCTACAACGGTAAATCTCGCTTCCTCGACA
65 ATTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
** *
33281854 TTGCAATTAAAAGATTGAAGCCACAATAGCGGATCTTACTTTCCCAGGCGGTGCAGTGGAACAGA
1 TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAGA
* *
33281919 TTGAAGCTACAACGGTGAATCTCGTTTCCTCGACA
66 TTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
* * * * *
33281954 TTGTAATTAAAAGATTAAAGCTACAACGGCGAATCTTACTTTCCCAGGCAGTGCAATGGAACAGA
1 TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAGA
* * * *
33282019 TTGAAGCTACAACGGCGAATCTCGTTTCCCTGTCA
66 TTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
* * * * **
33282054 TTGCAATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTTCCTAAGAGGTATAGTGGAACAGA
1 TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAGA
* *
33282119 TTGAAGCTACAACGGCGAATCTCGCTTCCTCGACA
66 TTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
33282154 TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAGA
1 TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAGA
* ** *
33282219 TTGAAGCTACAATGGTGAATCTCATTTCTCCGACA
66 TTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
* * *
33282254 TTGCAATTAAAAGATTG-AGCCCACAACGGCGAATCTTACTTTCCCAGGTGGTGTAGCGGAACAG
1 TTGCAATTAAAAGATTGAAG-CCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAG
* * * *
33282318 ATTGAAGCTACGACGGCGAATTTCACTTCCCCGACA
65 ATTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
* ** * * *
33282354 TTGTAATTCAAAAGATTGAAGCCACAACGATGAATCTTAC-TTCCCAGGCGGTGCAGCGAAACAA
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAG
* *
33282418 ATTGAAGCTACAACGGTGAATCTTGCTTCCCCGATA
65 ATTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
* * * * * * *** *
33282454 ATGTAATTAAAAAGATTAAAGCTACAACAGCGAATCTTAC-TCCCCAGGCGGTGCAACAGAATAG
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAG
* *
33282518 ATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACA
65 ATTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
* *
33282554 TTGAAATTTAAAAGATTGAAGCCACAACGACGAATCTTA
1 TTGCAA-TTAAAAGATTGAAGCCACAACGGCGAATCTTA
33282593 GTTCTCCTCG
Statistics
Matches: 734, Mismatches: 99, Indels: 13
0.87 0.12 0.02
Matches are distributed among these distances:
99 4 0.01
100 694 0.95
101 34 0.05
102 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (100 bp):
TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGGTGCAGTGGAACAGA
TTGAAGCTACAACGGTGAATCTCGCTTCCCCGACA
Found at i:33282740 original size:100 final size:100
Alignment explanation
Indices: 33282601--33283126 Score: 676
Period size: 100 Copynumber: 5.3 Consensus size: 100
33282591 TAGTTCTCCT
* * * * *
33282601 CGACATTGAAATTTAAAAGATTAAAGCCACAACGGCGAATCTTACTTCTCAGGTGATGCAGCAGA
1 CGACATTGCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCAGA
**
33282666 ACAGATTGAAGCTACGACGACGAATCTCACTTCCC
66 ACAGATTGAAGCTACGACGGTGAATCTCACTTCCC
* * * * ***
33282701 TGACATTGCAATTCAAAAGATTGAAGCCACAACGACGAATCTTACTTTCCAGGCGATACATTGGA
1 CGACATTGCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCAGA
* * *
33282766 ATAGATTAAAGCTACGATGGTGAATCTCACTTCCC
66 ACAGATTGAAGCTACGACGGTGAATCTCACTTCCC
* * * * *
33282801 CGACATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAAGTGATACAGCGGA
1 CGACATTGCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCAGA
*
33282866 ACAGATTGAAGCTACGATGGTGAATCTCACTTCCC
66 ACAGATTGAAGCTACGACGGTGAATCTCACTTCCC
* * *
33282901 CGACATTGTAATTCAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCAGGCGATGCAGCAGA
1 CGACATTGCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCAGA
* * * **
33282966 ACAGATTAAAGCTACAATGGTGAATCTTGCTTCCC
66 ACAGATTGAAGCTACGACGGTGAATCTCACTTCCC
* * * * *
33283001 CAACATTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTCCCCAGGCGGTGCAGCAGA
1 CGACATTGCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCAGA
* *
33283066 ACAGATTGAAGCTACGACGGTGAATCTTACTTTCC
66 ACAGATTGAAGCTACGACGGTGAATCTCACTTCCC
* *
33283101 CGACATTGTAGTT-AAATAGATTGAAG
1 CGACATTGCAATTCAAA-AGATTGAAG
33283127 AAGCCAATCC
Statistics
Matches: 370, Mismatches: 55, Indels: 2
0.87 0.13 0.00
Matches are distributed among these distances:
99 3 0.01
100 367 0.99
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (100 bp):
CGACATTGCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCAGA
ACAGATTGAAGCTACGACGGTGAATCTCACTTCCC
Found at i:33283200 original size:44 final size:42
Alignment explanation
Indices: 33283137--33283375 Score: 187
Period size: 44 Copynumber: 5.6 Consensus size: 42
33283127 AAGCCAATCC
*
33283137 TATCTTCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCGGA-TAAAACC-CAGATCT
* * *** *
33283181 TATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAG-TCT
1 TATCTCCCTGAAGTTGCAGTAGAGCGGATAAAACCCAGATCT
* * * * *
33283222 TATCTCCCTGAAGTTGCAGTGGAACAGGCAGAAGAAGCCA-ATCC
1 TATCTCCCTGAAGTTGCAGTAGAGC-GG-ATAA-AACCCAGATCT
*
33283266 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCGGA-TAAAACC-CAGATCT
* * * * *** *
33283310 TATCTCTCTAAAGTTGTAGTAGAGCAGATCGCATCCAG-TCT
1 TATCTCCCTGAAGTTGCAGTAGAGCGGATAAAACCCAGATCT
* *
33283351 TATCTCCCTAAAGTTGCAGTGGAGC
1 TATCTCCCTGAAGTTGCAGTAGAGC
33283376 AGACCAAAAT
Statistics
Matches: 155, Mismatches: 33, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
41 50 0.32
42 11 0.07
43 13 0.08
44 81 0.52
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (42 bp):
TATCTCCCTGAAGTTGCAGTAGAGCGGATAAAACCCAGATCT
Found at i:33283324 original size:129 final size:129
Alignment explanation
Indices: 33283123--33283373 Score: 457
Period size: 129 Copynumber: 1.9 Consensus size: 129
33283113 TAAATAGATT
*
33283123 GAAGAAGCCAATCCTATCTTCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCT
1 GAAGAAGCCAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCT
* *
33283188 CTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGGCA
66 CTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGGCA
*
33283252 GAAGAAGCCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCT
1 GAAGAAGCCAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCT
*
33283317 CTAAAGTTGTAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGA
66 CTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGA
33283374 GCAGACCAAA
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 117 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25
Consensus pattern (129 bp):
GAAGAAGCCAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCT
CTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGGCA
Found at i:33283705 original size:20 final size:20
Alignment explanation
Indices: 33283668--33283710 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
33283658 CCAATAACCT
*
33283668 ACCTAAGCCCAAATACCCAA
1 ACCTAAGCCCAAACACCCAA
*
33283688 ACCT-AGCCCAAAGCACCCCA
1 ACCTAAGCCCAAA-CACCCAA
33283708 ACC
1 ACC
33283711 CATTTTCAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.40, C:0.47, G:0.07, T:0.07
Consensus pattern (20 bp):
ACCTAAGCCCAAACACCCAA
Found at i:33284751 original size:3 final size:3
Alignment explanation
Indices: 33284721--33284795 Score: 86
Period size: 3 Copynumber: 25.7 Consensus size: 3
33284711 TATTTTCTTC
*
33284721 ATT ATT -TT ATAT ATT ATC ATT CATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT AT-T ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT
*
33284767 ATT ATT A-T ATT A-T ATT ATT -TT ATA ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
33284796 ACTTACATAT
Statistics
Matches: 62, Mismatches: 4, Indels: 12
0.79 0.05 0.15
Matches are distributed among these distances:
2 8 0.13
3 48 0.77
4 6 0.10
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:33287093 original size:2 final size:2
Alignment explanation
Indices: 33287088--33287115 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
33287078 ATTGTTTTGC
33287088 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33287116 CATCAGGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33289556 original size:11 final size:11
Alignment explanation
Indices: 33289542--33289579 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
33289532 AATTCGAGAG
33289542 AAATTTTGTTA
1 AAATTTTGTTA
33289553 AAA-TTTGTTGA
1 AAATTTTGTT-A
33289564 AAATTTTGTTA
1 AAATTTTGTTA
33289575 AAATT
1 AAATT
33289580 CAAGAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 6 0.24
11 13 0.52
12 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (11 bp):
AAATTTTGTTA
Found at i:33289561 original size:10 final size:10
Alignment explanation
Indices: 33289546--33289579 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
33289536 CGAGAGAAAT
33289546 TTTGTTAAAA
1 TTTGTTAAAA
33289556 TTTGTTGAAAA
1 TTTGTT-AAAA
33289567 TTTTGTTAAAA
1 -TTTGTTAAAA
33289578 TT
1 TT
33289580 CAAGAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 8 0.36
11 8 0.36
12 6 0.27
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (10 bp):
TTTGTTAAAA
Found at i:33310286 original size:22 final size:23
Alignment explanation
Indices: 33310249--33310291 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
33310239 GGTCACCATG
* *
33310249 TCTTTCATCAAAAGTTGATCGAC
1 TCTTTCATAAAAAGTTAATCGAC
33310272 TCTTTCA-AAAAAGTTAATCG
1 TCTTTCATAAAAAGTTAATCG
33310292 CAGGGATTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (23 bp):
TCTTTCATAAAAAGTTAATCGAC
Found at i:33310892 original size:14 final size:14
Alignment explanation
Indices: 33310873--33310902 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
33310863 TGATTGGTGT
33310873 AAAATATTTTCCGA
1 AAAATATTTTCCGA
*
33310887 AAAATATTTTCTGA
1 AAAATATTTTCCGA
33310901 AA
1 AA
33310903 TTTTCGGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (14 bp):
AAAATATTTTCCGA
Found at i:33313244 original size:20 final size:20
Alignment explanation
Indices: 33313219--33313258 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
33313209 AATATTTTCC
*
33313219 AGTAAATCAATTTACAGAAA
1 AGTAAAACAATTTACAGAAA
* *
33313239 AGTAAAACATTTTCCAGAAA
1 AGTAAAACAATTTACAGAAA
33313259 TCATTTTACG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (20 bp):
AGTAAAACAATTTACAGAAA
Found at i:33313265 original size:14 final size:14
Alignment explanation
Indices: 33313242--33313281 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
33313232 ACAGAAAAGT
*
33313242 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
33313256 AAATCATTTTACGG
1 AAAACATTTTACAG
33313270 AAAACATTTTAC
1 AAAACATTTTAC
33313282 TGGTAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:33313267 original size:34 final size:35
Alignment explanation
Indices: 33313207--33313273 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
33313197 CAAACACCAG
*
33313207 AAAATATTTTCCAGTAAATCAATTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCAATTTACAGAAAAGT
* *
33313242 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCAATTTACAGAAAA
33313274 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCAATTTACAGAAAAGT
Found at i:33317248 original size:21 final size:21
Alignment explanation
Indices: 33317223--33317265 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
33317213 TAAATGAAAA
33317223 ATTTTA-AATTTTTTAATAATT
1 ATTTTATAATTTTTTAA-AATT
33317244 ATTTTATAATTTTTTAAAATT
1 ATTTTATAATTTTTTAAAATT
33317265 A
1 A
33317266 AATGACTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTATAATTTTTTAAAATT
Found at i:33328333 original size:22 final size:22
Alignment explanation
Indices: 33328302--33328371 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
33328292 TTAAACGGCT
*
33328302 AATATCAATATATTTTTTAATC
1 AATATAAATATATTTTTTAATC
** *
33328324 AATATAAATATAACTTTTAACGTTTT
1 AATATAAATATATTTTTTAA----TC
33328350 AATATAAATATATTTTTATAAT
1 AATATAAATATATTTTT-TAAT
33328372 TCATAATCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
22 17 0.46
23 1 0.03
26 16 0.43
27 3 0.08
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (22 bp):
AATATAAATATATTTTTTAATC
Found at i:33328378 original size:26 final size:25
Alignment explanation
Indices: 33328300--33328378 Score: 67
Period size: 26 Copynumber: 3.2 Consensus size: 25
33328290 ACTTAAACGG
*
33328300 CTAATATCAATATATTTTT-TAA-T
1 CTAATATAAATATATTTTTATAATT
* *
33328323 C-AATATAAATATAACTTTTA-ACGTT
1 CTAATATAAATAT-ATTTTTATA-ATT
*
33328348 TTAATATAAATATATTTTTATAATT
1 CTAATATAAATATATTTTTATAATT
33328373 CATAAT
1 C-TAAT
33328379 CATTTTAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 11
0.70 0.12 0.18
Matches are distributed among these distances:
22 10 0.24
23 7 0.17
25 9 0.21
26 16 0.38
ACGTcount: A:0.43, C:0.08, G:0.01, T:0.48
Consensus pattern (25 bp):
CTAATATAAATATATTTTTATAATT
Found at i:33332226 original size:20 final size:21
Alignment explanation
Indices: 33332201--33332241 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
33332191 GTTTTGGTGC
*
33332201 TGTTGTT-TTTCTGCTGTTTT
1 TGTTGTTATTTCTGCTATTTT
*
33332221 TGTTGTTATTTTTGCTATTTT
1 TGTTGTTATTTCTGCTATTTT
33332242 GTTTTTGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.05, C:0.07, G:0.17, T:0.71
Consensus pattern (21 bp):
TGTTGTTATTTCTGCTATTTT
Found at i:33339762 original size:14 final size:15
Alignment explanation
Indices: 33339727--33339755 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33339717 AAGCACAAAG
33339727 CAAAAAACAAAAAAA
1 CAAAAAACAAAAAAA
33339742 CAAAAAA-AAAAAAA
1 CAAAAAACAAAAAAA
33339756 GATAAAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (15 bp):
CAAAAAACAAAAAAA
Found at i:33345127 original size:22 final size:22
Alignment explanation
Indices: 33345100--33345146 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
33345090 AAATAGGATG
33345100 AAAATGCTACAATTGAAAACTA
1 AAAATGCTACAATTGAAAACTA
33345122 AAAATGCTACAATTGAAAACTA
1 AAAATGCTACAATTGAAAACTA
33345144 AAA
1 AAA
33345147 TCTTTTACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.57, C:0.13, G:0.09, T:0.21
Consensus pattern (22 bp):
AAAATGCTACAATTGAAAACTA
Found at i:33346961 original size:20 final size:20
Alignment explanation
Indices: 33346923--33346961 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
33346913 AACAAAAGGA
*
33346923 TAAAACAATAAAAACAAAAT
1 TAAAACAATAAAAAAAAAAT
33346943 TAAAACCAA-AAAAAAAAAA
1 TAAAA-CAATAAAAAAAAAA
33346962 AAGAGATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.10
Consensus pattern (20 bp):
TAAAACAATAAAAAAAAAAT
Found at i:33346962 original size:21 final size:20
Alignment explanation
Indices: 33346923--33346962 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
33346913 AACAAAAGGA
* *
33346923 TAAAACAATAAAAACAAAAT
1 TAAAACAAAAAAAAAAAAAT
33346943 TAAAACCAAAAAAAAAAAAA
1 TAAAA-CAAAAAAAAAAAAA
33346963 AGAGATTGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.80, C:0.10, G:0.00, T:0.10
Consensus pattern (20 bp):
TAAAACAAAAAAAAAAAAAT
Found at i:33357889 original size:39 final size:38
Alignment explanation
Indices: 33357846--33357971 Score: 155
Period size: 39 Copynumber: 3.3 Consensus size: 38
33357836 AATAAAGTAT
* *
33357846 TTATATTAAAAAATTACCATAAATATAATAAATATTTTA
1 TTATATTAAAAAA-CACAATAAATATAATAAATATTTTA
* *
33357885 TTATATTAAAAAACCAAAATAAATATAATAAATGTTTTA
1 TTATATTAAAAAA-CACAATAAATATAATAAATATTTTA
* *
33357924 TTGTATTAAAAAACACAAATAAATATAAT-AATTTTTTA
1 TTATATTAAAAAACAC-AATAAATATAATAAATATTTTA
*
33357962 TTGTATTAAA
1 TTATATTAAA
33357972 TATNNNNNNN
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
38 20 0.26
39 58 0.74
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (38 bp):
TTATATTAAAAAACACAATAAATATAATAAATATTTTA
Found at i:33357961 original size:38 final size:39
Alignment explanation
Indices: 33357864--33357971 Score: 166
Period size: 39 Copynumber: 2.8 Consensus size: 39
33357854 AAAAATTACC
*
33357864 ATAAATATAATAAATATTTTATTATATTAAAAAACCAAA
1 ATAAATATAATAAATATTTTATTGTATTAAAAAACCAAA
*
33357903 ATAAATATAATAAATGTTTTATTGTATTAAAAAA-CACAA
1 ATAAATATAATAAATATTTTATTGTATTAAAAAACCA-AA
*
33357942 ATAAATATAAT-AATTTTTTATTGTATTAAA
1 ATAAATATAATAAATATTTTATTGTATTAAA
33357972 TATNNNNNNN
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
38 20 0.31
39 45 0.69
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.40
Consensus pattern (39 bp):
ATAAATATAATAAATATTTTATTGTATTAAAAAACCAAA
Found at i:33361361 original size:15 final size:15
Alignment explanation
Indices: 33361337--33361420 Score: 127
Period size: 15 Copynumber: 5.7 Consensus size: 15
33361327 CGGAGTATTA
33361337 CTAAACCCTAAAACC
1 CTAAACCCTAAAACC
* * *
33361352 TTAAATCCT-AAATC
1 CTAAACCCTAAAACC
33361366 CTAAACCCTAAAACC
1 CTAAACCCTAAAACC
33361381 CTAAACCCTAAAACC
1 CTAAACCCTAAAACC
33361396 CTAAACCCT-AAACC
1 CTAAACCCTAAAACC
33361410 CTAAACCCTAA
1 CTAAACCCTAA
33361421 TTAGGGGAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
14 25 0.41
15 36 0.59
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (15 bp):
CTAAACCCTAAAACC
Found at i:33361363 original size:7 final size:7
Alignment explanation
Indices: 33361337--33361420 Score: 114
Period size: 7 Copynumber: 11.6 Consensus size: 7
33361327 CGGAGTATTA
33361337 CTAAACC
1 CTAAACC
33361344 CTAAAACC
1 CT-AAACC
* *
33361352 TTAAATC
1 CTAAACC
*
33361359 CTAAATC
1 CTAAACC
33361366 CTAAACC
1 CTAAACC
33361373 CTAAAACC
1 CT-AAACC
33361381 CTAAACC
1 CTAAACC
33361388 CTAAAACC
1 CT-AAACC
33361396 CTAAACC
1 CTAAACC
33361403 CTAAACC
1 CTAAACC
33361410 CTAAACC
1 CTAAACC
33361417 CTAA
1 CTAA
33361421 TTAGGGGAGC
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
7 50 0.71
8 20 0.29
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:33361368 original size:22 final size:22
Alignment explanation
Indices: 33361337--33361414 Score: 111
Period size: 22 Copynumber: 3.5 Consensus size: 22
33361327 CGGAGTATTA
*
33361337 CTAAACCCTAAAACCTTAAATC
1 CTAAACCCTAAAACCTTAAACC
* * *
33361359 CTAAATCCTAAACCCTAAAACC
1 CTAAACCCTAAAACCTTAAACC
*
33361381 CTAAACCCTAAAACCCTAAACC
1 CTAAACCCTAAAACCTTAAACC
33361403 CTAAACCCTAAA
1 CTAAACCCTAAA
33361415 CCCTAATTAG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (22 bp):
CTAAACCCTAAAACCTTAAACC
Found at i:33361379 original size:29 final size:29
Alignment explanation
Indices: 33361337--33361420 Score: 125
Period size: 29 Copynumber: 2.9 Consensus size: 29
33361327 CGGAGTATTA
* * *
33361337 CTAAACCCTAAAACCTTAAATCCTAAATC
1 CTAAACCCTAAAACCCTAAACCCTAAACC
33361366 CTAAACCCTAAAACCCTAAACCCTAAAACC
1 CTAAACCCTAAAACCCTAAACCCT-AAACC
33361396 CTAAACCCT-AAACCCTAAACCCTAA
1 CTAAACCCTAAAACCCTAAACCCTAA
33361421 TTAGGGGAGC
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
28 2 0.04
29 36 0.71
30 13 0.25
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (29 bp):
CTAAACCCTAAAACCCTAAACCCTAAACC
Found at i:33362770 original size:3 final size:3
Alignment explanation
Indices: 33362762--33362798 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
33362752 TGATGTTCTC
33362762 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
33362799 CTCTATAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Done.