Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 97 of 210
Found at i:33363562 original size:21 final size:20
Alignment explanation
Indices: 33363538--33363581 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
33363528 AAAACTGTTA
*
33363538 TAACAGTTAGCAGTTAGTAGT
1 TAACAGTTAACAG-TAGTAGT
*
33363559 TAACAGTTAACAGTGGTAGT
1 TAACAGTTAACAGTAGTAGT
33363579 TAA
1 TAA
33363582 GGTTGTTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.32
Consensus pattern (20 bp):
TAACAGTTAACAGTAGTAGT
Found at i:33382827 original size:9 final size:9
Alignment explanation
Indices: 33382813--33382843 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
33382803 GTTAAACGAA
33382813 TCGAGTTAT
1 TCGAGTTAT
*
33382822 TCGAGTTAA
1 TCGAGTTAT
33382831 TCGAGTTAT
1 TCGAGTTAT
33382840 TCGA
1 TCGA
33382844 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:33382914 original size:9 final size:9
Alignment explanation
Indices: 33382897--33382933 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
33382887 TGAGTTTTCG
33382897 AATTCGAAT
1 AATTCGAAT
*
33382906 AACTCGAAT
1 AATTCGAAT
33382915 AATTCGAAT
1 AATTCGAAT
33382924 AATTCGAAT
1 AATTCGAAT
33382933 A
1 A
33382934 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:33383610 original size:5 final size:5
Alignment explanation
Indices: 33383600--33383625 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
33383590 CTCGAAAATT
33383600 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
33383626 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:33385730 original size:28 final size:29
Alignment explanation
Indices: 33385680--33385735 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
33385670 TAAAGTTTTT
* *
33385680 TTATAAAAATTATTCAAATTTTTTATTAA
1 TTATAAAAATGACTCAAATTTTTTATTAA
*
33385709 TTATAAAAATGACTC-ACTTTTTTATTA
1 TTATAAAAATGACTCAAATTTTTTATTA
33385736 TGTACATACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (29 bp):
TTATAAAAATGACTCAAATTTTTTATTAA
Found at i:33395066 original size:20 final size:20
Alignment explanation
Indices: 33395031--33395079 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
33395021 ATCATTGTCT
*
33395031 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
33395050 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
33395070 TTGCTTACTT
1 TTGCTTACTT
33395080 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:33396019 original size:24 final size:24
Alignment explanation
Indices: 33395987--33396034 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
33395977 ACTTACTATG
33395987 AGCTTGAGAAAGTGAAGAAACCCT
1 AGCTTGAGAAAGTGAAGAAACCCT
33396011 AGCTTGAGAAAGTGAAGAAACCCT
1 AGCTTGAGAAAGTGAAGAAACCCT
33396035 TGAAGTTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.17
Consensus pattern (24 bp):
AGCTTGAGAAAGTGAAGAAACCCT
Found at i:33397350 original size:21 final size:22
Alignment explanation
Indices: 33397326--33397376 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
33397316 GTGTCCCCTC
33397326 CACACGGGCACGTA-TGGCCTT
1 CACACGGGCACGTAGTGGCCTT
*
33397347 CACAC-AG-ACGTATGTGGCCTT
1 CACACGGGCACGTA-GTGGCCTT
*
33397368 CACATGGGC
1 CACACGGGC
33397377 GTGTAGACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 6
0.72 0.09 0.19
Matches are distributed among these distances:
19 5 0.22
20 1 0.04
21 16 0.70
22 1 0.04
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (22 bp):
CACACGGGCACGTAGTGGCCTT
Found at i:33404057 original size:37 final size:36
Alignment explanation
Indices: 33404006--33404081 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
33403996 ATTCTAAAAA
*
33404006 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
33404042 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
33404079 TAA
1 TAA
33404082 AGTGATTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:33404223 original size:25 final size:24
Alignment explanation
Indices: 33404189--33404236 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
33404179 TGTAGAGAGA
33404189 AAATTCTCTAAAGAGATTATTCTAG
1 AAATTCTCTAAAGAGATT-TTCTAG
* * *
33404214 AAATTTTCTAGAGATATTTTCTA
1 AAATTCTCTAAAGAGATTTTCTA
33404237 ATTTACAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (24 bp):
AAATTCTCTAAAGAGATTTTCTAG
Found at i:33406870 original size:41 final size:41
Alignment explanation
Indices: 33406818--33406994 Score: 228
Period size: 41 Copynumber: 4.3 Consensus size: 41
33406808 CGATTTCAAG
* *
33406818 AAAGCACCGCTAATGCTCGGGGCTTTAGCGGTGTTTTTGAA
1 AAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAA
* * * *
33406859 AATGCGTCGCTAATGCTCGGGGTTTTCGCGGCGTTTTTGAA
1 AAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAA
* * * * * *
33406900 AAGGCGCTGCTAATGCTCGGTGTTTTAGCGGCATTTTTTAA
1 AAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAA
* *
33406941 AAAGCGCCGCTAATGCTGGGGGCTTTAGCGACGTTTTTGAA
1 AAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAA
33406982 AAAGCGCCGCTAA
1 AAAGCGCCGCTAA
33406995 AAATATTTTA
Statistics
Matches: 115, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 115 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (41 bp):
AAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAA
Found at i:33407319 original size:18 final size:19
Alignment explanation
Indices: 33407285--33407325 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
33407275 AGTGTTTTTG
33407285 GTTTAGGGTATATGATTTA
1 GTTTAGGGTATATGATTTA
33407304 GTTTAGGGTA-ATGATTTA
1 GTTTAGGGTATATGATTTA
33407322 -TTTA
1 GTTTA
33407326 AGATTTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 4 0.18
18 8 0.36
19 10 0.45
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (19 bp):
GTTTAGGGTATATGATTTA
Found at i:33413680 original size:7 final size:7
Alignment explanation
Indices: 33413659--33413876 Score: 138
Period size: 7 Copynumber: 30.7 Consensus size: 7
33413649 TTAATTATCA
*
33413659 TTATAGT
1 TTATGGT
*
33413666 TTAGGGT
1 TTATGGT
33413673 TTATGGT
1 TTATGGT
*
33413680 TTAGGGT
1 TTATGGT
* *
33413687 ATATAGT
1 TTATGGT
*
33413694 TTAGGGT
1 TTATGGT
*
33413701 TTAAGGT
1 TTATGGT
*
33413708 TTAAGGT
1 TTATGGT
*
33413715 TTAGGAGT
1 TTATG-GT
33413723 TACTAT--T
1 T--TATGGT
**
33413730 TTAAAGT
1 TTATGGT
*
33413737 TTATGGA
1 TTATGGT
33413744 TTATGGGT
1 TTAT-GGT
* *
33413752 TTAGGGA
1 TTATGGT
33413759 TTATGGT
1 TTATGGT
33413766 TTATGGT
1 TTATGGT
33413773 TTATGGT
1 TTATGGT
33413780 TTATGGT
1 TTATGGT
33413787 TTATGGT
1 TTATGGT
*
33413794 TTAAGCG-
1 TTATG-GT
**
33413801 TTGGGGT
1 TTATGGT
**
33413808 TTAAAGT
1 TTATGGT
* *
33413815 TTAAGGG
1 TTATGGT
33413822 TTA-GAGAT
1 TTATG-G-T
*
33413830 TTAGGGT
1 TTATGGT
33413837 TTATGGT
1 TTATGGT
33413844 TTATGGT
1 TTATGGT
33413851 TTATGGT
1 TTATGGT
33413858 TTATGGT
1 TTATGGT
*
33413865 TTATGTT
1 TTATGGT
33413872 TTATG
1 TTATG
33413877 ATTCAGTGTT
Statistics
Matches: 167, Mismatches: 33, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
5 2 0.01
6 2 0.01
7 147 0.88
8 13 0.08
9 1 0.01
10 2 0.01
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:33418789 original size:104 final size:102
Alignment explanation
Indices: 33418648--33418956 Score: 413
Period size: 102 Copynumber: 3.0 Consensus size: 102
33418638 GGTACCAGAG
*
33418648 TACGAGAAAAAGTAAAAAAAAAAATATTTTGTGGTGGCCTGGCAATGGTCGGCACCACTTTTTTT
1 TACGA-AAAAAGT--AAAAAAAAA-ATTTTGTGGTGGCCTGGCAATGGCCGGCACCACTTTTTTT
33418713 AAAAAATTTTTTTACTTTTTTCGTGTCAGATAAGATATCAATA
62 AAAAAA--TTTTTACTTTTTTCGTGTCAGATAAGATATCAATA
* ***
33418756 TACGAAAAAAGTAAAAAAAAAATTTTGTGGTGGCCTAGCAATGGCCGGCACCACCTTTTAAAAAA
1 TACGAAAAAAGTAAAAAAAAAATTTTGTGGTGGCCTGGCAATGGCCGGCACCA-CTTTTTTTAAA
* *
33418821 AAATTTTTACTTTTTTCGTGTCAAATAAGATATCAGTA
65 AAATTTTTACTTTTTTCGTGTCAGATAAGATATCAATA
* * *
33418859 TACAAAAAAAGTAAAAAAAAAA-TTGGTGGTGGCATGGCAATGGCCGGCACCACCTTTTTTTAAA
1 TACGAAAAAAGTAAAAAAAAAATTTTGTGGTGGCCTGGCAATGGCCGGCACCA-CTTTTTTTAAA
*** *
33418923 AAAAAATTACTTTTTTCGTGTCAGATAAGCTATC
65 AAATTTTTACTTTTTTCGTGTCAGATAAGATATC
33418957 GGAAAAAGTA
Statistics
Matches: 181, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
102 65 0.36
103 54 0.30
104 30 0.17
105 20 0.11
107 7 0.04
108 5 0.03
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (102 bp):
TACGAAAAAAGTAAAAAAAAAATTTTGTGGTGGCCTGGCAATGGCCGGCACCACTTTTTTTAAAA
AATTTTTACTTTTTTCGTGTCAGATAAGATATCAATA
Found at i:33418851 original size:103 final size:103
Alignment explanation
Indices: 33418648--33419046 Score: 412
Period size: 103 Copynumber: 3.9 Consensus size: 103
33418638 GGTACCAGAG
* * *
33418648 TACGAGAAAAAGTAAAAAAAAAAATATTTTGTGGTGGCCTGGCAATGGTCGGCACCACTTTTTTT
1 TACGA-AAAAAGT--AAAAAAAAA-ATTTTGTGGTGGCCTGGCAATGGCCGGCACCAC-CTTTTA
**
33418713 AAAAAATTTTTTTACTTTTTTCGTGTCAGATAAGATATCAATA
61 AAAAAAAATTTTTACTTTTTTCGTGTCAGATAAGATATCAATA
*
33418756 TACGAAAAAAGTAAAAAAAAAATTTTGTGGTGGCCTAGCAATGGCCGGCACCACCTTTTAAAAAA
1 TACGAAAAAAGTAAAAAAAAAATTTTGTGGTGGCCTGGCAATGGCCGGCACCACCTTTTAAAAAA
* *
33418821 AAATTTTTACTTTTTTCGTGTCAAATAAGATATCAGTA
66 AAATTTTTACTTTTTTCGTGTCAGATAAGATATCAATA
* * *
33418859 TACAAAAAAAGTAAAAAAAAAA-TTGGTGGTGGCATGGCAATGGCCGGCACCACCTTTTTTTAAA
1 TACGAAAAAAGTAAAAAAAAAATTTTGTGGTGGCCTGGCAATGGCCGGCACCACC---TTTTAAA
33418923 AAAAAA---TTACTTTTTTCGTGTCAGATAAG----C--TA
63 AAAAAATTTTTACTTTTTTCGTGTCAGATAAGATATCAATA
* * * * * * *
33418955 T-CGGAAAAAGTAAAAAAAATATTTTTTTTGGTGGTGGCTTGGTAATGGCCCGCTCCACCTTTTT
1 TACGAAAAAAGTAAAAAAAA-A---ATTTT-GTGGTGGCCTGGCAATGGCCGGCACCACCTTTTA
*
33419019 AAAAAAAA--TTTAATTTTTT-GTGTCAGAT
61 AAAAAAAATTTTTACTTTTTTCGTGTCAGAT
33419047 GTCATCTTTA
Statistics
Matches: 258, Mismatches: 23, Indels: 30
0.83 0.07 0.10
Matches are distributed among these distances:
95 16 0.06
96 4 0.02
98 22 0.09
99 9 0.03
100 2 0.01
101 25 0.10
102 51 0.20
103 64 0.25
104 31 0.12
105 22 0.09
107 7 0.03
108 5 0.02
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (103 bp):
TACGAAAAAAGTAAAAAAAAAATTTTGTGGTGGCCTGGCAATGGCCGGCACCACCTTTTAAAAAA
AAATTTTTACTTTTTTCGTGTCAGATAAGATATCAATA
Found at i:33418970 original size:102 final size:99
Alignment explanation
Indices: 33418652--33419046 Score: 345
Period size: 102 Copynumber: 3.9 Consensus size: 99
33418642 CCAGAGTACG
* * *
33418652 AGAAAAAGTAAAAAAAAAAATATTTTGTGGTGGCCTGGCAATGGTCGGCACCACTTTTTTTAAAA
1 AGAAAAAGT--AAAAAAAAA-ATTTGGTGGTGGCCTGGCAATGGCCGGCACCAC-CTTTTTAAAA
***
33418717 AATTTTTTTACTTTTTTCGTGTCAGATAAGATATC-AATATA
62 AA--AAATTACTTTTTTCGTGTCAGATAAGATATCGAA-A-A
* * *
33418758 CGAAAAAAGTAAAAAAAAAATTTTGTGGTGGCCTAGCAATGGCCGGCACCACC-TTTTAAAAAAA
1 AG-AAAAAGTAAAAAAAAAATTTGGTGGTGGCCTGGCAATGGCCGGCACCACCTTTTTAAAAAAA
* *
33418822 AATTTTTACTTTTTTCGTGTCAAATAAGATATCAGTATACA
65 AA---TTACTTTTTTCGTGTCAGATAAGATATC-G-A-AAA
*
33418863 A-AAAAAGTAAAAAAAAAA-TTGGTGGTGGCATGGCAATGGCCGGCACCACCTTTTTTTAAAAAA
1 AGAAAAAGTAAAAAAAAAATTTGGTGGTGGCCTGGCAATGGCCGGCACCACC--TTTTTAAAAAA
*
33418926 AAATTACTTTTTTCGTGTCAGATAAGCTATCGGAAAA
64 AAATTACTTTTTTCGTGTCAGATAAGATATC-GAAAA
* ***** * * * *
33418963 AGTAAAAA--AAATATTTTTTTTGGTGGTGGCTTGGTAATGGCCCGCTCCACCTTTTTAAAAAAA
1 AG-AAAAAGTAAAAAAAAAATTTGGTGGTGGCCTGGCAATGGCCGGCACCACCTTTTTAAAAAAA
* *
33419026 ATTTAATTTTTT-GTGTCAGAT
65 AATTACTTTTTTCGTGTCAGAT
33419047 GTCATCTTTA
Statistics
Matches: 246, Mismatches: 29, Indels: 36
0.79 0.09 0.12
Matches are distributed among these distances:
98 9 0.04
99 22 0.09
100 7 0.03
101 29 0.12
102 71 0.29
103 44 0.18
104 31 0.13
105 23 0.09
106 2 0.01
107 8 0.03
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (99 bp):
AGAAAAAGTAAAAAAAAAATTTGGTGGTGGCCTGGCAATGGCCGGCACCACCTTTTTAAAAAAAA
ATTACTTTTTTCGTGTCAGATAAGATATCGAAAA
Found at i:33419734 original size:107 final size:104
Alignment explanation
Indices: 33419533--33419958 Score: 524
Period size: 107 Copynumber: 4.0 Consensus size: 104
33419523 GTGCGCATGC
* **
33419533 TCGTATACTGATAGCTTATCTGACATGAAAAAAGTAAAAAAAAAAAATTAAAAGGTGGTGCCGGC
1 TCGTATACTGATAGCTTATCTGACACGAAAAAAGT-AAAAAAAAATTTTAAAAGGTGGTGCCGGC
* *
33419598 CATTACCAGGCCACCACCAAAAAATTTTTTTTTTTACTCTTT
65 CATTGCCAGGCCACCACC--AAAATTTTTTTTTTTACTTTTT
*
33419640 TCGTATACTGATAGCTTATCTGACAAGAAAAAAGTAAAAAAAAATGTTTTTTTAAAAGGTGGTGC
1 TCGTATACTGATAGCTTATCTGACACGAAAAAAGTAAAAAAAAA-----TTTTAAAAGGTGGTGC
33419705 CGGCCATTGCCAGGCCACCACC-AAA---TTTTTTTTACTTTTT
61 CGGCCATTGCCAGGCCACCACCAAAATTTTTTTTTTTACTTTTT
* * * **
33419745 TCGTATATTGATATCTTATCTGACACGAAAAAATTTAAAAAAAAA-TTTAAAAGGTGGTGCCAAC
1 TCGTATACTGATAGCTTATCTGACACGAAAAAA-GTAAAAAAAAATTTTAAAAGGTGGTGCCGGC
**
33419809 CATTGTTAGGCCACCACCAAAAAAATTTTTTTTTTTACTTTTT
65 CATTGCCAGGCCACCACC---AAAATTTTTTTTTTTACTTTTT
* * **
33419852 TCGTATACTGATATCTTATCTGACACGAAAAAAATAAAAAAAAATTCAAAAAGGTGGTGCCGGCC
1 TCGTATACTGATAGCTTATCTGACACGAAAAAAGTAAAAAAAAATTTTAAAAGGTGGTGCCGGCC
* *
33419917 ATTGCCAGGCCACTA-C-AAATTTTTTTTTTTACTTTTC
66 ATTGCCAGGCCACCACCAAAATTTTTTTTTTTACTTTTT
33419954 TCGTA
1 TCGTA
33419959 CTCTGGTACC
Statistics
Matches: 282, Mismatches: 23, Indels: 33
0.83 0.07 0.10
Matches are distributed among these distances:
100 33 0.12
102 25 0.09
104 3 0.01
105 44 0.16
106 30 0.11
107 109 0.39
108 3 0.01
111 35 0.12
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (104 bp):
TCGTATACTGATAGCTTATCTGACACGAAAAAAGTAAAAAAAAATTTTAAAAGGTGGTGCCGGCC
ATTGCCAGGCCACCACCAAAATTTTTTTTTTTACTTTTT
Found at i:33419789 original size:12 final size:12
Alignment explanation
Indices: 33419772--33419796 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33419762 ATCTGACACG
33419772 AAAAAATTTAAA
1 AAAAAATTTAAA
33419784 AAAAAATTTAAA
1 AAAAAATTTAAA
33419796 A
1 A
33419797 GGTGGTGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAAATTTAAA
Found at i:33422021 original size:43 final size:43
Alignment explanation
Indices: 33421974--33422072 Score: 155
Period size: 43 Copynumber: 2.3 Consensus size: 43
33421964 AAACGGTACT
33421974 TTTAGCGGCGTTTGT-GATAAAAGCGCCGCTAAAGGCCATGTTC
1 TTTAGCGGCGTTTGTGGAT-AAAGCGCCGCTAAAGGCCATGTTC
* *
33422017 TTTAGCGGCGTTTGTGGGTAAAGCGTCGCTAAAGGCCATGTTC
1 TTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAGGCCATGTTC
*
33422060 TATAGCGGCGTTT
1 TTTAGCGGCGTTT
33422073 TTTGCTAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
43 50 0.96
44 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAGGCCATGTTC
Found at i:33424561 original size:21 final size:21
Alignment explanation
Indices: 33424537--33424588 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
33424527 AGATGTTCAT
33424537 GGGCCGGGCCGGGCCAGGTTC
1 GGGCCGGGCCGGGCCAGGTTC
*
33424558 GGGCCGGGCCGGGCCAGGTTT
1 GGGCCGGGCCGGGCCAGGTTC
*
33424579 GGGTCGGGCC
1 GGGCCGGGCC
33424589 CATAAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.04, C:0.31, G:0.54, T:0.12
Consensus pattern (21 bp):
GGGCCGGGCCGGGCCAGGTTC
Found at i:33432314 original size:29 final size:29
Alignment explanation
Indices: 33432248--33432314 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
33432238 TACAAAACTC
* * *
33432248 AACCCATCTCATCAAAATTATTTCTTCAG
1 AACCCATCCCATCAAAACTATTTCTTCAA
** * *
33432277 AACTTATCCCCTCAAAACTATTTTTTCAA
1 AACCCATCCCATCAAAACTATTTCTTCAA
33432306 AACCCATCC
1 AACCCATCC
33432315 TATACAAATT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.01, T:0.33
Consensus pattern (29 bp):
AACCCATCCCATCAAAACTATTTCTTCAA
Found at i:33432388 original size:32 final size:31
Alignment explanation
Indices: 33432347--33432406 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
33432337 ATCTTTAAAC
33432347 CCTAAAAATAAATAAAACCCTAAA-CTTAACCA
1 CCTAAAAAT-AA-AAAACCCTAAATCTTAACCA
*
33432379 CCTAAAAATAAAAAATCCTAAATCTTAA
1 CCTAAAAATAAAAAACCCTAAATCTTAA
33432407 TTTTATAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 10 0.38
31 7 0.27
32 9 0.35
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (31 bp):
CCTAAAAATAAAAAACCCTAAATCTTAACCA
Found at i:33435546 original size:31 final size:32
Alignment explanation
Indices: 33435511--33435577 Score: 100
Period size: 35 Copynumber: 2.0 Consensus size: 32
33435501 TGAATTCGAG
33435511 TTTCTTCTA-ATCTCAAATAGCTTACAAACAT
1 TTTCTTCTAGATCTCAAATAGCTTACAAACAT
33435542 TTTCTTCTAGTTGATCTCAAATAGCTTACAAACAT
1 TTTCTTCTA---GATCTCAAATAGCTTACAAACAT
33435577 T
1 T
33435578 ATTGTAAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
31 9 0.28
35 23 0.72
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (32 bp):
TTTCTTCTAGATCTCAAATAGCTTACAAACAT
Found at i:33449863 original size:3 final size:3
Alignment explanation
Indices: 33449848--33449914 Score: 55
Period size: 3 Copynumber: 22.0 Consensus size: 3
33449838 ATTTTGGTAA
* * * **
33449848 TAT TAT CAT TAT TAT TAC TAT TAT TAT TAT TTT TA- TAT TGC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
33449895 TAT CAT CGTAT TAT TAT TAT
1 TAT TAT --TAT TAT TAT TAT
33449915 CATCATGTAC
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 45 0.92
5 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:33460141 original size:3 final size:3
Alignment explanation
Indices: 33460126--33460192 Score: 55
Period size: 3 Copynumber: 22.0 Consensus size: 3
33460116 ATTTTGGTAA
* * * **
33460126 TAT TAT CAT TAT TAT TAC TAT TAT TAT TAT TTT TA- TAT TGC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
33460173 TAT CAT CGTAT TAT TAT TAT
1 TAT TAT --TAT TAT TAT TAT
33460193 CATCATGTAC
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 45 0.92
5 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:33462748 original size:14 final size:13
Alignment explanation
Indices: 33462706--33462753 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
33462696 TTTGGGAAAG
* *
33462706 AAAAGTTTTATTA
1 AAAAGTGTTATAA
* *
33462719 AAAAGTGTTGTGA
1 AAAAGTGTTATAA
33462732 AAAAGTGTTATAAA
1 AAAAGTGTTAT-AA
33462746 AAAAGTGT
1 AAAAGTGT
33462754 GATTTGTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
13 20 0.69
14 9 0.31
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (13 bp):
AAAAGTGTTATAA
Found at i:33467746 original size:20 final size:19
Alignment explanation
Indices: 33467701--33467738 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33467691 CATCAAAACA
33467701 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
33467720 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
33467739 TTCAGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:33469567 original size:15 final size:16
Alignment explanation
Indices: 33469547--33469584 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
33469537 TATAAAATTG
33469547 TTATTTAATAT-AAAA
1 TTATTTAATATCAAAA
*
33469562 TTATTTTAATATCAATA
1 TTA-TTTAATATCAAAA
33469579 TTATTT
1 TTATTT
33469585 TTATTATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 3 0.15
16 11 0.55
17 6 0.30
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATTTAATATCAAAA
Found at i:33469583 original size:17 final size:16
Alignment explanation
Indices: 33469536--33469585 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
33469526 TCTAATAAAT
*
33469536 ATATAAAATTGTTATTTA
1 ATATAAAATT-AT-TTTA
33469554 ATATAAAATTATTTTA
1 ATATAAAATTATTTTA
*
33469570 ATATCAATATTATTTT
1 ATAT-AAAATTATTTT
33469586 TATTATGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 8 0.28
17 11 0.38
18 10 0.34
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATAAAATTATTTTA
Found at i:33471453 original size:33 final size:33
Alignment explanation
Indices: 33471402--33471464 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
33471392 TGAGAGAGTC
*
33471402 AGAGGGACACCTGAGGTTGTGGTGTGGATGTTG
1 AGAGAGACACCTGAGGTTGTGGTGTGGATGTTG
33471435 AGAGAGACACCT-AGGGTTGTGGTGTGGATG
1 AGAGAGACACCTGA-GGTTGTGGTGTGGATG
33471465 GGGCAGTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.21, C:0.10, G:0.44, T:0.25
Consensus pattern (33 bp):
AGAGAGACACCTGAGGTTGTGGTGTGGATGTTG
Found at i:33472480 original size:30 final size:31
Alignment explanation
Indices: 33472440--33472502 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
33472430 ATTATCAATT
33472440 AATTAA-TTTTTAAAATTCAAAAATAATT-AA
1 AATTAATTTTTTAAAATT-AAAAATAATTGAA
* *
33472470 AATTTATTTTTTAAAATTAAAAATTATTGAA
1 AATTAATTTTTTAAAATTAAAAATAATTGAA
33472501 AA
1 AA
33472503 GGTAAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 14 0.48
31 15 0.52
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (31 bp):
AATTAATTTTTTAAAATTAAAAATAATTGAA
Found at i:33474806 original size:16 final size:15
Alignment explanation
Indices: 33474785--33474845 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
33474775 TTAATCACTT
33474785 TAATATTAAATTAATA
1 TAATATT-AATTAATA
* * *
33474801 TAATATTTATCAAGA
1 TAATATTAATTAATA
*
33474816 TAAATATTAATTAATT
1 T-AATATTAATTAATA
*
33474832 TAATATTAAGTAAT
1 TAATATTAATTAAT
33474846 CACTTTAATA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
15 18 0.50
16 18 0.50
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (15 bp):
TAATATTAATTAATA
Found at i:33474836 original size:15 final size:15
Alignment explanation
Indices: 33474783--33474845 Score: 54
Period size: 16 Copynumber: 4.1 Consensus size: 15
33474773 ACTTAATCAC
33474783 TTTAATATTAAATTAA
1 TTTAATATT-AATTAA
* * *
33474799 TATAATATTTATCAA
1 TTTAATATTAATTAA
* *
33474814 GATAAATATTAATTAA
1 -TTTAATATTAATTAA
*
33474830 TTTAATATTAAGTAA
1 TTTAATATTAATTAA
33474845 T
1 T
33474846 CACTTTAATA
Statistics
Matches: 35, Mismatches: 11, Indels: 3
0.71 0.22 0.06
Matches are distributed among these distances:
15 17 0.49
16 18 0.51
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (15 bp):
TTTAATATTAATTAA
Found at i:33474853 original size:66 final size:67
Alignment explanation
Indices: 33474776--33474907 Score: 178
Period size: 66 Copynumber: 2.0 Consensus size: 67
33474766 TAATTAAACT
* * * *
33474776 TAATCACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATT-AATT-AATTTAATATT
1 TAATCACTTTAATACTAAATTAATAAAATA-CTATCAAGATAAATATTAAATTAAATTAAATATT
33474839 AAG
65 AAG
** *
33474842 TAATCACTTTAATACTAAATTAATAAAATACTATTTAGATAACTATTAAATTAAATTAAATATTA
1 TAATCACTTTAATACTAAATTAATAAAATACTATCAAGATAAATATTAAATTAAATTAAATATTA
33474907 A
66 A
33474908 ACTATTAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
65 13 0.23
66 32 0.56
67 12 0.21
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (67 bp):
TAATCACTTTAATACTAAATTAATAAAATACTATCAAGATAAATATTAAATTAAATTAAATATTA
AG
Found at i:33476383 original size:112 final size:112
Alignment explanation
Indices: 33476180--33476401 Score: 284
Period size: 112 Copynumber: 2.0 Consensus size: 112
33476170 TATCATTCTA
* * * * * * **
33476180 CCAATGAATACATCTATGCCTCTACCTGTGGAGTCAACTGCTCTGATAGTCAAGATTAGTCATCT
1 CCAATGAATACATCTATGCCTCTACCTATGCAGTCAACTGATCTAATAGCCAAGACTAACCATCT
*
33476245 CCCCAATTGGAATTGTAGACAACATAATAATCCTTCTTAGTATTTTT
66 CCCCAATTGGAATTGTAGACAACATAATAATCCTTCTAAGTATTTTT
**
33476292 CCAATGAATACATCTATGTTTCTA-CTCATGCAGTCAACTGATCTAATAGCCAAGACTAACCATC
1 CCAATGAATACATCTATGCCTCTACCT-ATGCAGTCAACTGATCTAATAGCCAAGACTAACCATC
** ***
33476356 TTTCCAATTGGAATTGTAGATGGCATAATAATCCTTCTAAGTATTT
65 TCCCCAATTGGAATTGTAGACAACATAATAATCCTTCTAAGTATTT
33476402 GAATCAAGTG
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
111 2 0.02
112 91 0.98
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34
Consensus pattern (112 bp):
CCAATGAATACATCTATGCCTCTACCTATGCAGTCAACTGATCTAATAGCCAAGACTAACCATCT
CCCCAATTGGAATTGTAGACAACATAATAATCCTTCTAAGTATTTTT
Found at i:33484591 original size:20 final size:20
Alignment explanation
Indices: 33484566--33484603 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33484556 AATGTTCTTT
33484566 CATTCTTTAT-GATTTTTTTC
1 CATTCTTT-TGGATTTTTTTC
33484586 CATTCTTTTGGATTTTTT
1 CATTCTTTTGGATTTTTT
33484604 ATGCCAAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.13, C:0.13, G:0.08, T:0.66
Consensus pattern (20 bp):
CATTCTTTTGGATTTTTTTC
Found at i:33486879 original size:44 final size:44
Alignment explanation
Indices: 33486814--33487095 Score: 212
Period size: 44 Copynumber: 6.4 Consensus size: 44
33486804 AGTAGGCTAG
* * * *
33486814 GAAGAAAGCAGATCCTATCTTCATGTATTGGCATGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
* **
33486858 GAAGATAGCAGGTCTTGTCTTCCCATACTGGTGGC--GAAGTAGATC
1 GAAGATAGCAGATCTTGTCTT--CATA-TATTGGCATGAAGTAGATC
* * * * * * *
33486903 AAAGAAAACAGATATTGTCTTCATGTATTAGCGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
* * * * ** * ** * *
33486947 -AGGGACAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATT
1 GA-AGATAGCAGATCTTGTCTTCATATATTGG-CATGAAGTAGATC
* * *
33486992 GAAGAAAGCAGATCCTGTCTTCATATATTGGCATGAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
* *
33487036 GAAGATAGCAGATCTTGTCTTCATCTATTGGCTTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
33487080 GAAGATTA-CAGATCTT
1 GAAGA-TAGCAGATCTT
33487096 ATCTCCCTAA
Statistics
Matches: 183, Mismatches: 46, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
42 4 0.02
43 4 0.02
44 107 0.58
45 59 0.32
46 4 0.02
47 5 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (44 bp):
GAAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
Found at i:33486915 original size:89 final size:89
Alignment explanation
Indices: 33486815--33487057 Score: 317
Period size: 89 Copynumber: 2.7 Consensus size: 89
33486805 GTAGGCTAGG
* *
33486815 AAGAAAGCAGATCCTATCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCTTGTCTTC
1 AAGAAAGCAGATCCTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGATCTTGTCTTC
33486880 CCATACTGGTGGCGAAGTAGATCA
66 CCATACTGGTGGCGAAGTAGATCA
* ** * * * * * *
33486904 AAGAAAACAGATATTGTCTTCATGTATTAGCGTGAAGTAGATC-AGGGACAACAGATCTTGTCTC
1 AAGAAAGCAGATCCTGTCTTCATGTATTGGCATGAAGTAGATCGA-AGATAGCAGATCTTGTCTT
* * **
33486968 CCCATACTGGTGGTGGAGTAGATTG
65 CCCATACTGGTGGCGAAGTAGATCA
* *
33486993 AAGAAAGCAGATCCTGTCTTCATATATTGGCATGAAGTGGATCGAAGATAGCAGATCTTGTCTTC
1 AAGAAAGCAGATCCTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGATCTTGTCTTC
33487058 ATCTATTGGC
Statistics
Matches: 126, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
88 1 0.01
89 124 0.98
90 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (89 bp):
AAGAAAGCAGATCCTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGATCTTGTCTTC
CCATACTGGTGGCGAAGTAGATCA
Found at i:33486921 original size:45 final size:45
Alignment explanation
Indices: 33486847--33487057 Score: 138
Period size: 45 Copynumber: 4.7 Consensus size: 45
33486837 TGTATTGGCA
* * * *
33486847 TGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCCATACTGGTGG
1 TGAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTGG
* * *** * * *
33486892 CGAAGTAGATCAAAGAAAACAGATATTGTCTTCATGTATTAG-CG
1 TGAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTGG
** * *
33486936 TGAAGTAGATCAGGGACAACAGATCTTGTCTCCCCATACTGGTGG
1 TGAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTGG
* ** * * ** * **
33486981 TGGAGTAGATTGAAGAAAGCAGATCCTGTCTTCATATATTGG-CA
1 TGAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTGG
* * * *
33487025 TGAAGTGGATCGAAGATAGCAGATCTTGTCTTC
1 TGAAGTAGATCAAAGAAAACAGATCTTGTCTTC
33487058 ATCTATTGGC
Statistics
Matches: 122, Mismatches: 43, Indels: 3
0.73 0.26 0.02
Matches are distributed among these distances:
44 60 0.49
45 62 0.51
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTGG
Found at i:33487223 original size:132 final size:132
Alignment explanation
Indices: 33487074--33487568 Score: 837
Period size: 132 Copynumber: 3.8 Consensus size: 132
33487064 TGGCTTGAAG
* ** *
33487074 TAGATCGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGACGAATTT
1 TAGATCAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATTT
33487139 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTAG
66 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTAG
33487204 AA
131 AA
* * *
33487206 TAGATCAAAGATTACAGATCTTATCTCCCTAAGCATTAGTGGAGCAGATCGAATATGGCGGATTT
1 TAGATCAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATTT
* *
33487271 TACCTCCCTGAGGTTACAGTGGAATACATTGAATCCAGTAATTCTATCTCCCTGGGCAGCAGTAG
66 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTAG
33487336 AA
131 AA
* *
33487338 TAGATCAAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGAATATGGCGAATTT
1 TAGATCAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATTT
*
33487403 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
66 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTAG
33487468 AA
131 AA
** * * *
33487470 TAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTT
1 TAGATCAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATTT
33487535 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAG
66 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAG
33487569 ATTACAGATC
Statistics
Matches: 343, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 343 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
TAGATCAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATTT
TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTAG
AA
Found at i:33487387 original size:44 final size:44
Alignment explanation
Indices: 33487072--33487878 Score: 298
Period size: 44 Copynumber: 18.3 Consensus size: 44
33487062 ATTGGCTTGA
* *
33487072 AGTAGATCGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* ** * * * *
33487116 AGCAGATTAAAGATGAC-GAATTTTACCTCCCTGAGGTTA-CAGTGG
1 AGTAGATCGAAGATTACAG-ATCTTATCTCCCT-AGG-CAGCAGTGG
* * * * * *
33487161 AGTACATTGAAGCCAGTA-A-TTC-TATCTCCCTGGGCAGCAGTAG
1 AGTAGATCGAAG--ATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* * * **
33487204 AATAGATCAAAGATTACAGATCTTATCTCCCTAAGCATTAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* * ** * * * *
33487248 AGCAGATCGAATATGGCGGATTTTACCTCCCTGAGGTTA-CAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCT-AGG-CAGCAGTGG
* * * * * *
33487293 AATACATTG-A-A-TCCAGTAAT-TCTATCTCCCTGGGCAGCAGTAG
1 AGTAGATCGAAGATTACAG--ATCT-TATCTCCCTAGGCAGCAGTGG
* * *
33487336 AATAGATCAAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* * ** * * *
33487380 AGCAGATCGAATATGGC-GAATTTTACCTCCCTGAGGTTA-CAGTGG
1 AGTAGATCGAAGATTACAG-ATCTTATCTCCCT-AGG-CAGCAGTGG
* * * * *
33487425 AGTACATTGAAGCCAGTA-A-TTC-TATCTCCCTGGGCAGCAGTGG
1 AGTAGATCGAAG--ATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* * *
33487468 AATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
** * * * *
33487512 AGTAGATCGAAGATGGCGGATTTTACCTCCCTGAGGTTA-CAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCT-AGG-CAGCAGTGG
* * * *
33487557 AGTACATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* *** * * * * *
33487601 AGCAGATC-AAGGAGGGCGGATTTTACCTCTCTGAGGTTA-CAGTGG
1 AGTAGATCGAA-GATTACAGATCTTATCTCCCT-AGG-CAGCAGTGG
* * * * * *
33487646 AGTACATTGAAGCCAATA-A-TTC-TATCTCCATGGGCAGCAGTGG
1 AGTAGATCGAAG--ATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* * ** * *
33487689 AATAGATTGAAGATTTTAGATCTTATCTCTCTAGGCAGTAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* ** * * *
33487733 AGTAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTA-CAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCT-AGG-CAGCAGTGG
* * * * * *
33487778 AGTACATTGAAGCCAGTA-A-TTC-TATCTCCCT-GAACAACAGTGG
1 AGTAGATCGAAG--ATTACAGATCTTATCTCCCTAG-GCAGCAGTGG
* * * *
33487821 AATAGATTGAAGATTACAGATCTTATCTCCCTAGACAGTAGTGG
1 AGTAGATCGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
33487865 AGTAGATCGAAGAT
1 AGTAGATCGAAGAT
33487879 GGCAGATTTT
Statistics
Matches: 536, Mismatches: 174, Indels: 106
0.66 0.21 0.13
Matches are distributed among these distances:
41 11 0.02
42 12 0.02
43 95 0.18
44 286 0.53
45 114 0.21
46 13 0.02
47 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
AGTAGATCGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
Found at i:33487626 original size:221 final size:221
Alignment explanation
Indices: 33487345--33487789 Score: 766
Period size: 221 Copynumber: 2.0 Consensus size: 221
33487335 GAATAGATCA
* * *
33487345 AAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGAATATGGCGAATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGGCGAATTTTACCTCC
* *
33487410 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCATGGGCAGCAGTGGAATAGAT
*
33487475 TGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCT
131 TGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCT
33487540 CCCTGAGGTTACAGTGGAGTACATTG
196 CCCTGAGGTTACAGTGGAGTACATTG
*
33487566 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAGGAGGGCGGATTTTACCTC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA-GAGGGCGAATTTTACCTC
*
33487630 TCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCATGGGCAGCAGTGGAATAGA
65 CCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCATGGGCAGCAGTGGAATAGA
** * *
33487695 TTGAAGATTTTAGATCTTATCTCTCTAGGCAGTAGTGGAGTAGATCGAATATGGCAGATTTTACC
130 TTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACC
33487760 TCCCTGAGGTTACAGTGGAGTACATTG
195 TCCCTGAGGTTACAGTGGAGTACATTG
33487787 AAG
1 AAG
33487790 CCAGTAATTC
Statistics
Matches: 211, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
220 2 0.01
221 209 0.99
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (221 bp):
AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGGCGAATTTTACCTCC
CTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCATGGGCAGCAGTGGAATAGAT
TGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCT
CCCTGAGGTTACAGTGGAGTACATTG
Found at i:33487687 original size:132 final size:132
Alignment explanation
Indices: 33487551--33487965 Score: 600
Period size: 132 Copynumber: 3.1 Consensus size: 132
33487541 CCTGAGGTTA
* * * *
33487551 CAGTGGAGTACATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAGGAG
1 CAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAA-GAT
* * * *
33487615 GGCGGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCATGGG
65 GGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGA
33487680 CAG
130 CAG
** * * *
33487683 CAGTGGAATAGATTGAAGATTTTAGATCTTATCTCTCTAGGCAGTAGTGGAGTAGATCGAATATG
1 CAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATG
* *
33487748 GCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGAAC
66 GCAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGAC
*
33487813 AA
131 AG
33487815 CAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCT-AGACAGTAGTGGAGTAGATCGAAGAT
1 CAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAG-CAGTAGTGGAGTAGATCGAAGAT
* * *
33487879 GGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTATATTGAGGCCAGTAATTCTATCTCCCTGGT
65 GGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGA
*
33487944 CGG
130 CAG
* *
33487947 CAGTGGAATCGATCGAAGA
1 CAGTGGAATAGATTGAAGA
33487966 AAGCAGATAT
Statistics
Matches: 251, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
131 1 0.00
132 248 0.99
133 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (132 bp):
CAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATG
GCAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGAC
AG
Found at i:33487689 original size:264 final size:261
Alignment explanation
Indices: 33487155--33487953 Score: 733
Period size: 264 Copynumber: 3.0 Consensus size: 261
33487145 CCTGAGGTTA
* *
33487155 CAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTAGAATAGATCAAAGATTA
1 CAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCGAAGATTA
* * *
33487220 CAGATCTTATCTCCCTAAGCATTAGTGGAGCAGATCGAATATGGCGGATTTTACCTCCCTGAGGT
66 CAGATCTTATCTCCCTAGGCA-TAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTGAGGT
* * * * *
33487285 TACAGTGGAATACATTG-A-A-TCCAGTAAT-TCTATCTCCCTGGGCAGCAGTAGAATAGATCAA
130 TACAGTGGAATACATTGAAGATTACAG--ATCT-TATCTCCCT-AGCAGTAGTGGAGTAGATC-A
** * * * * * * * * * *
33487346 AGATTACAGATCTTATCTCCCT-AGG-CAGTAGTGGAGCAGATCGAATATGGCGAAT--TT-TAC
190 AGATGGCAGATTTTACCTCTCTGAGGTTA-CAGTGGAGTACATTG-A-A--GCCAATAATTCTAT
*
33487406 CTCCCTGAGGTTA-
250 CTCCCTG-GG-CAG
*
33487419 CAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTA
1 CAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCGAAGATTA
33487484 CAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTGAGGT
66 CAGATCTTATCTCCCTAGGCA-TAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTGAGGT
* *
33487549 TACAGTGGAGTACATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGA
130 TACAGTGGAATACATTGAAGATTACAGATCTTATCTCCCT-AGCAGTAGTGGAGTAGATCAA-GA
* * *
33487614 GGGCGGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCATGG
193 TGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGG
33487679 GCAG
258 GCAG
* * **** * * * * *
33487683 CAGTGGAATAGATTGAAGATTTTAGA-TCTTATCTCTCTAGGCAGTAGTGGAGTAGATCGAATAT
1 CAGTGGAGTACATTGAAGCCAGTA-ATTC-TATCTCCCTGGGCAGCAGTGGAATAGATCGAAGAT
** * * * * * * *** ** * *
33487747 GGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG-TAATTCTATCTCCCTGA
64 TACAGATCTTATCTCCCT-AGG-CATAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTGA
*** *
33487811 -ACAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGACAGTAGTGGAGTAGATCGA
127 GGTTACAGTGGAATACATTGAAGATTACAGATCTTATCTCCCTAG-CAGTAGTGGAGTAGATC-A
* * *
33487875 AGATGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTATATTGAGGCCAGTAATTCTATCTCCC
190 AGATGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCC
* *
33487940 TGGTCGG
255 TGGGCAG
33487947 CAGTGGA
1 CAGTGGA
33487954 ATCGATCGAA
Statistics
Matches: 446, Mismatches: 72, Indels: 34
0.81 0.13 0.06
Matches are distributed among these distances:
262 5 0.01
263 3 0.01
264 289 0.65
265 108 0.24
266 35 0.08
267 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (261 bp):
CAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCGAAGATTA
CAGATCTTATCTCCCTAGGCATAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTGAGGTT
ACAGTGGAATACATTGAAGATTACAGATCTTATCTCCCTAGCAGTAGTGGAGTAGATCAAGATGG
CAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGGGCA
G
Found at i:33487862 original size:353 final size:353
Alignment explanation
Indices: 33487213--33487919 Score: 1184
Period size: 353 Copynumber: 2.0 Consensus size: 353
33487203 GAATAGATCA
* * *
33487213 AAGATTACAGATCTTATCTCCCTAAGCATTAGTGGAGCAGATCGAATATGGCGGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGGCGGATTTTACCTCC
* * *
33487278 CTGAGGTTACAGTGGAATACATTGAATCCAGTAATTCTATCTCCCTGGGCAGCAGTAGAATAGAT
66 CTGAGGTTACAGTGGAATACATTGAAGCCAATAATTCTATCTCCATGGGCAGCAGTAGAATAGAT
33487343 CAAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGAATATGGCGAATTTTACCT
131 CAAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGAATATGGCGAATTTTACCT
** *
33487408 CCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAG
196 CCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGAACAACAGTGGAATAG
* *
33487473 ATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTAC
261 ATTGAAGATTACAGATCTTATCTCCCTAGACAGTAGTGGAGTAGATCGAAGATGGCAGATTTTAC
33487538 CTCCCTGAGGTTACAGTGGAGTACATTG
326 CTCCCTGAGGTTACAGTGGAGTACATTG
33487566 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAGGAGGGCGGATTTTACCTC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA-GAGGGCGGATTTTACCTC
* * *
33487630 TCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCATGGGCAGCAGTGGAATAGA
65 CCTGAGGTTACAGTGGAATACATTGAAGCCAATAATTCTATCTCCATGGGCAGCAGTAGAATAGA
** ** * *
33487695 TTGAAGATTTTAGATCTTATCTCTCTAGGCAGTAGTGGAGTAGATCGAATATGGC-AGATTTTAC
130 TCAAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGAATATGGCGA-ATTTTAC
33487759 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGAACAACAGTGGAAT
194 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGAACAACAGTGGAAT
33487824 AGATTGAAGATTACAGATCTTATCTCCCTAGACAGTAGTGGAGTAGATCGAAGATGGCAGATTTT
259 AGATTGAAGATTACAGATCTTATCTCCCTAGACAGTAGTGGAGTAGATCGAAGATGGCAGATTTT
* *
33487889 ACCTCTCTGAGGTTACAGTGGAGTATATTG
324 ACCTCCCTGAGGTTACAGTGGAGTACATTG
33487919 A
1 A
33487920 GGCCAGTAAT
Statistics
Matches: 330, Mismatches: 22, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
352 3 0.01
353 327 0.99
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (353 bp):
AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGGCGGATTTTACCTCC
CTGAGGTTACAGTGGAATACATTGAAGCCAATAATTCTATCTCCATGGGCAGCAGTAGAATAGAT
CAAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGAATATGGCGAATTTTACCT
CCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGAACAACAGTGGAATAG
ATTGAAGATTACAGATCTTATCTCCCTAGACAGTAGTGGAGTAGATCGAAGATGGCAGATTTTAC
CTCCCTGAGGTTACAGTGGAGTACATTG
Found at i:33487910 original size:221 final size:220
Alignment explanation
Indices: 33487345--33487877 Score: 546
Period size: 221 Copynumber: 2.4 Consensus size: 220
33487335 GAATAGATCA
* * ** * * *
33487345 AAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGAA-TATGG-C-GAATTTTACC
1 AAGAGTACAGATCTTATCTCCCTAAGCAACAGTGGAACAGATC-AAGGA-GGACAG-ATCTTACC
* * * ** * *
33487407 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATA
63 TCCCTGAAGTTA-AGTGGAGTACATCGAAGACAACAATTCTACCTCCATGGGCAGCAGTGGAATA
*
33487472 GATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTA
127 GATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTA
33487537 CCTCCCTGAGGTTACAGTGGAGTACATTG
192 CCTCCCTGAGGTTACAGTGGAGTACATTG
* ** * * * * *
33487566 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGAGGGCGGATTTTACCTCT
1 AAGAGTACAGATCTTATCTCCCTAAGCAACAGTGGAACAGATCAAGGAGGACAGATCTTACCTCC
* * * * *
33487631 CTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCATGGGCAGCAGTGGAATAGAT
66 CTGAAGTTA-AGTGGAGTACATCGAAGACAACAATTCTACCTCCATGGGCAGCAGTGGAATAGAT
** * *
33487696 TGAAGATTTTAGATCTTATCTCTCTAGGCAGTAGTGGAGTAGATCGAATATGGCAGATTTTACCT
130 TGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCT
33487761 CCCTGAGGTTACAGTGGAGTACATTG
195 CCCTGAGGTTACAGTGGAGTACATTG
* * * ** *
33487787 AAGCCAGTA-A-TTC-TATCTCCCTGAA-CAACAGTGGAATAGATTGAA-GATTACAGATCTTAT
1 AAG--AGTACAGATCTTATCTCCCT-AAGCAACAGTGGAACAGA-TCAAGGAGGACAGATCTTAC
*
33487847 CTCCCTAGACAG-T-AGTGGAGTAGATCGAAGA
62 CTCCCT-GA-AGTTAAGTGGAGTACATCGAAGA
33487878 TGGCAGATTT
Statistics
Matches: 275, Mismatches: 28, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
219 15 0.05
220 38 0.14
221 216 0.79
222 3 0.01
223 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (220 bp):
AAGAGTACAGATCTTATCTCCCTAAGCAACAGTGGAACAGATCAAGGAGGACAGATCTTACCTCC
CTGAAGTTAAGTGGAGTACATCGAAGACAACAATTCTACCTCCATGGGCAGCAGTGGAATAGATT
GAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTC
CCTGAGGTTACAGTGGAGTACATTG
Found at i:33488087 original size:485 final size:481
Alignment explanation
Indices: 33486980--33488055 Score: 1401
Period size: 485 Copynumber: 2.2 Consensus size: 481
33486970 CATACTGGTG
* * * * * *
33486980 GTGGAGTAGATTGAAGAAAGCAGATCCTGTCTTCATATATTGGCATGAAGTGGATCGAAGATAGC
1 GTGGAATAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAGAGC
* *
33487045 AGATCTTGTCTTCATCTATTGGCTTGAAGTAGATCGAAGATTACAGATCTTATCTCCCTAAGCAG
66 AGAT-TTGTCTTC-CCTATTGG-TGGAAGTAGATCGAAGATTACAGATCTTATCTCCCTAAGCAG
* *
33487110 TAGTGGAGCAGATTAAAGATGACGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
128 TAGTGGAGCAGATCAAAGAGGACGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
* *
33487175 AGTAATTCTATCTCCCTGGGCAGCAGTAGAATAGATCAAAGATTACAGATCTTATCTCCCTAAGC
193 AATAATTCTATCTCCATGGGCAGCAGTAGAATAGATCAAAGATTACAGATCTTATCTCCCTAAGC
* * *
33487240 ATTAGTGGAGCAGATCGAATATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAATACATTGAAT
258 AGTAGTGGAGCAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAATACATTGAAG
** *
33487305 CCAGTAATTCTATCTCCCTGGGCAGCAGTAGAATAGATCAAAGATTACAGATCTTATCTCCCTAG
323 CCAGTAATTCTATCTCCCTGAACAACAGTAGAATAGATCAAAGATTACAGATCTTATCTCCCTAG
* *
33487370 GCAGTAGTGGAGCAGATCGAATATGGCGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGA
388 ACAGTAGTGGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGA
33487435 AGCCAGTAATTCTATCTCCCTGGGCAGCA
453 AGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * * * * * * *
33487464 GTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAGGCAGTAG--TGGAGTAGATCGAAGAT
1 GTGGAATAGATCGAAGA-AAGCAGATCTTGTCT-TC-ATGTATTGGCATGAAGTAGATCGAAGA-
* * * * *
33487526 G-GCGGATTT-TACCTCCCTGAGGTTACAGTGG-AGTACATTGAAGATTACAGATCTTATCTCCC
62 GAGCAGATTTGT-CTTCCCT-A--TT--GGTGGAAGTAGATCGAAGATTACAGATCTTATCTCCC
* * * *
33487588 TAAGCAGTAGTGGAGCAGATCAAGGAGGGCGGATTTTACCTCTCTGAGGTTACAGTGGAGTACAT
121 TAAGCAGTAGTGGAGCAGATCAAAGAGGACGAATTTTACCTCCCTGAGGTTACAGTGGAGTACAT
* ** **
33487653 TGAAGCCAATAATTCTATCTCCATGGGCAGCAGTGGAATAGATTGAAGATTTTAGATCTTATCTC
186 TGAAGCCAATAATTCTATCTCCATGGGCAGCAGTAGAATAGATCAAAGATTACAGATCTTATCTC
* * * *
33487718 TCTAGGCAGTAGTGGAGTAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTAC
251 CCTAAGCAGTAGTGGAGCAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAATAC
* **
33487783 ATTGAAGCCAGTAATTCTATCTCCCTGAACAACAGTGGAATAGATTGAAGATTACAGATCTTATC
316 ATTGAAGCCAGTAATTCTATCTCCCTGAACAACAGTAGAATAGATCAAAGATTACAGATCTTATC
* *
33487848 TCCCTAGACAGTAGTGGAGTAGATCGAAGATGGC-AGATTTTACCTCTCTGAGGTTACAGTGGAG
381 TCCCTAGACAGTAGTGGAGCAGATCGAAGATGGCGA-ATTTTACCTCCCTGAGGTTACAGTGGAG
* * * *
33487912 TATATTGAGGCCAGTAATTCTATCTCCCTGGTCGGCA
445 TACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * *
33487949 GTGGAATCGATCGAAGAAAGCAGATATTGTATTCATGTATTGGCATGAAGTAGATCAAAGAGAGC
1 GTGGAATAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAGAGC
33488014 AGATATTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAT
66 AGAT-TTGTCTTCCC-TATTGGT-G-GAAGTAGATCGAAGAT
33488056 ATAAGTCTTG
Statistics
Matches: 499, Mismatches: 72, Indels: 41
0.82 0.12 0.07
Matches are distributed among these distances:
482 5 0.01
483 12 0.02
484 52 0.10
485 413 0.83
486 14 0.03
487 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (481 bp):
GTGGAATAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAGAGC
AGATTTGTCTTCCCTATTGGTGGAAGTAGATCGAAGATTACAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCAAAGAGGACGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAAT
AATTCTATCTCCATGGGCAGCAGTAGAATAGATCAAAGATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAATACATTGAAGCCA
GTAATTCTATCTCCCTGAACAACAGTAGAATAGATCAAAGATTACAGATCTTATCTCCCTAGACA
GTAGTGGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
CAGTAATTCTATCTCCCTGGGCAGCA
Found at i:33490751 original size:11 final size:11
Alignment explanation
Indices: 33490737--33490774 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
33490727 ACCAAAATAT
33490737 AAAAAAAAC-A
1 AAAAAAAACAA
33490747 AAAAAAAACAA
1 AAAAAAAACAA
* *
33490758 AAAAAATAGAA
1 AAAAAAAACAA
33490769 AAAAAA
1 AAAAAA
33490775 CCTGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.89, C:0.05, G:0.03, T:0.03
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:33490843 original size:27 final size:27
Alignment explanation
Indices: 33490805--33490881 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
33490795 CCCTGGGTGG
33490805 AGGGAAGCAGGTTGGCGGCACCAAACA
1 AGGGAAGCAGGTTGGCGGCACCAAACA
****
33490832 AGGGAAGCAGGTTGGCGGCACCAGTGG
1 AGGGAAGCAGGTTGGCGGCACCAAACA
* *
33490859 AGGGAACCAGGTTGGAGGCACCA
1 AGGGAAGCAGGTTGGCGGCACCA
33490882 CCCTTGAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.29, C:0.21, G:0.42, T:0.09
Consensus pattern (27 bp):
AGGGAAGCAGGTTGGCGGCACCAAACA
Found at i:33491006 original size:38 final size:38
Alignment explanation
Indices: 33490948--33491097 Score: 154
Period size: 38 Copynumber: 4.1 Consensus size: 38
33490938 GAAAGAAAGG
33490948 AAGAAAGAAAAAGAA-G---GAAAAGGAAAGGAGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
*
33490982 AAGAAAGAAAACGAAGGAAAGAAAAGGAAA-GAGGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGA-GAGGA
* *
33491020 AAGAAAGAAAAATAAGGAAAGAAAAGGAAAGGAGAAGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
* * *
33491058 GAA-AAA-AAAAAGAAAGAAGAAGAAGAGGGAAGGA-AGGA
1 -AAGAAAGAAAAAG-AAGGA-AAGAAAAGGAAAGGAGAGGA
33491096 AA
1 AA
33491098 AAAAANNNNN
Statistics
Matches: 98, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
34 14 0.14
35 1 0.01
37 9 0.09
38 57 0.58
39 17 0.17
ACGTcount: A:0.66, C:0.01, G:0.33, T:0.01
Consensus pattern (38 bp):
AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
Found at i:33491842 original size:19 final size:19
Alignment explanation
Indices: 33491794--33491845 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
33491784 AAAATATATA
** *
33491794 TAATATTTTGGTATTTTTT
1 TAATATTTTATTATTTTTG
33491813 TAATATTTTATTATTTTTG
1 TAATATTTTATTATTTTTG
*
33491832 TAATGTTTTATTAT
1 TAATATTTTATTAT
33491846 GGGTTTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (19 bp):
TAATATTTTATTATTTTTG
Found at i:33491870 original size:13 final size:13
Alignment explanation
Indices: 33491852--33491877 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33491842 TTATGGGTTT
33491852 TATAAAAAAATAA
1 TATAAAAAAATAA
33491865 TATAAAAAAATAA
1 TATAAAAAAATAA
33491878 AAAATTACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
TATAAAAAAATAA
Found at i:33491930 original size:27 final size:28
Alignment explanation
Indices: 33491884--33491949 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
33491874 ATAAAAAATT
33491884 ACCAAAATATTATAACTTTTT-TTATTG
1 ACCAAAATATTATAACTTTTTATTATTG
*
33491911 ACCAAAATATATATAA-TTTTTATTATTT
1 ACCAAAATAT-TATAACTTTTTATTATTG
33491939 ACCAAAATATT
1 ACCAAAATATT
33491950 TCAAAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
27 16 0.44
28 20 0.56
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.45
Consensus pattern (28 bp):
ACCAAAATATTATAACTTTTTATTATTG
Found at i:33491973 original size:17 final size:17
Alignment explanation
Indices: 33491951--33491984 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
33491941 CAAAATATTT
33491951 CAAAAAA-AAGTAAAAAA
1 CAAAAAAGAA-TAAAAAA
33491968 CAAAAAAGAATAAAAAA
1 CAAAAAAGAATAAAAAA
33491985 ANNNNNNNNN
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (17 bp):
CAAAAAAGAATAAAAAA
Found at i:33494105 original size:17 final size:17
Alignment explanation
Indices: 33494083--33494119 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
33494073 ATGGGGTAAG
33494083 ATGCTATTCTAATATTC
1 ATGCTATTCTAATATTC
33494100 ATGCTATTCTAATATTC
1 ATGCTATTCTAATATTC
33494117 ATG
1 ATG
33494120 ACATCTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (17 bp):
ATGCTATTCTAATATTC
Found at i:33494956 original size:13 final size:13
Alignment explanation
Indices: 33494938--33494962 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33494928 TTGTATCAAT
33494938 TTAATTATTCTAA
1 TTAATTATTCTAA
33494951 TTAATTATTCTA
1 TTAATTATTCTA
33494963 GTTTTAGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAATTATTCTAA
Found at i:33495128 original size:10 final size:10
Alignment explanation
Indices: 33495115--33495177 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
33495105 CTTTCCTCCC
33495115 CTTTCCTTTT
1 CTTTCCTTTT
33495125 CTTTCCTTCTT
1 CTTTCCTT-TT
33495136 -TTT-C-TTT
1 CTTTCCTTTT
*
33495143 CTTTCC-TCT
1 CTTTCCTTTT
33495152 CATTTCCTTTT
1 C-TTTCCTTTT
* *
33495163 CCTTCTTTTT
1 CTTTCCTTTT
33495173 CTTTC
1 CTTTC
33495178 TTCCTTTCTT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
7 2 0.05
8 4 0.09
9 5 0.12
10 27 0.63
11 5 0.12
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.67
Consensus pattern (10 bp):
CTTTCCTTTT
Found at i:33495136 original size:18 final size:19
Alignment explanation
Indices: 33495102--33495163 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
33495092 CTTATTTTTC
*
33495102 TTTCTTTCCTCCCCTTTCCT
1 TTTCTTTCCT-CTCTTTCCT
*
33495122 TTTCTTTCCT-TCTTT-TT
1 TTTCTTTCCTCTCTTTCCT
33495139 CTTTCTTTCCTCTCATTTCCT
1 -TTTCTTTCCTCTC-TTTCCT
33495160 TTTC
1 TTTC
33495164 CTTCTTTTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
17 1 0.03
18 14 0.40
19 2 0.06
20 17 0.49
21 1 0.03
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTCTTTCCTCTCTTTCCT
Found at i:33495178 original size:10 final size:10
Alignment explanation
Indices: 33495126--33495197 Score: 54
Period size: 10 Copynumber: 6.6 Consensus size: 10
33495116 TTTCCTTTTC
*
33495126 TTTCCTTCTT
1 TTTCTTTCTT
33495136 TTTCTTTCTT
1 TTTCTTTCTT
*
33495146 TCCTCTCATTTCCT
1 T--T-TC-TTTCTT
*
33495160 TTTCCTTCTT
1 TTTCTTTCTT
33495170 TTTCTTTCTT
1 TTTCTTTCTT
33495180 CCTTTCTTTCTT
1 --TTTCTTTCTT
*
33495192 CTTCTT
1 TTTCTT
33495198 CCCCTCTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
10 28 0.56
11 2 0.04
12 12 0.24
13 2 0.04
14 6 0.12
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:33495185 original size:38 final size:38
Alignment explanation
Indices: 33495091--33495185 Score: 120
Period size: 38 Copynumber: 2.5 Consensus size: 38
33495081 ATTCCAAACG
* * *
33495091 CCTTATTTTTCTTTCTTTCCTCCCCTTTCCTTTTCTTT
1 CCTTCTTTTTCTTTCTTTCCTCCCATTTCCTTTTCCTT
*
33495129 CCTTCTTTTTCTTTCTTTCCTCTCATTTCCTTTTCCTT
1 CCTTCTTTTTCTTTCTTTCCTCCCATTTCCTTTTCCTT
* *
33495167 -CTTTTTCTTTCTTCCTTTC
1 CCTTCTT-TTTCTTTCTTTC
33495186 TTTCTTCTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
37 5 0.10
38 45 0.90
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.64
Consensus pattern (38 bp):
CCTTCTTTTTCTTTCTTTCCTCCCATTTCCTTTTCCTT
Found at i:33495188 original size:18 final size:17
Alignment explanation
Indices: 33495122--33495199 Score: 72
Period size: 18 Copynumber: 4.5 Consensus size: 17
33495112 CCCCTTTCCT
33495122 TTTCTTTCCTTCTTTTTC
1 TTTC-TTCCTTCTTTTTC
*
33495140 TTTCTTTCC-TCTCATTTC
1 TTTC-TTCCTTCT-TTTTC
*
33495158 CTT-TTCCTTCTTTTTC
1 TTTCTTCCTTCTTTTTC
33495174 TTTCTTCCTTTCTTTCTTC
1 TTTCTTCC-TTCTTT-TTC
33495193 -TTCTTCC
1 TTTCTTCC
33495200 CCTCTCCTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
16 10 0.20
17 10 0.20
18 28 0.55
19 3 0.06
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTCTTCCTTCTTTTTC
Found at i:33495195 original size:28 final size:29
Alignment explanation
Indices: 33495115--33495197 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 29
33495105 CTTTCCTCCC
33495115 CTTTCCTTTTCTTTC--CTTCTTTTTCTTT
1 CTTTCC-TTTCTTTCTTCTTCTTTTTCTTT
*
33495143 CTTTCCTCTCATTTCCTTTTCCTTCTTTTTCTTT
1 CTTTCCTTTC-TTT-C--TT-CTTCTTTTTCTTT
33495177 C-TTCCTTTCTTTCTTCTTCTT
1 CTTTCCTTTCTTTCTTCTTCTT
33495198 CCCCTCTCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
27 3 0.07
28 15 0.33
29 3 0.07
31 1 0.02
32 3 0.07
33 7 0.15
34 14 0.30
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.67
Consensus pattern (29 bp):
CTTTCCTTTCTTTCTTCTTCTTTTTCTTT
Found at i:33495381 original size:15 final size:16
Alignment explanation
Indices: 33495356--33495385 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
33495346 GTTCAAGTTT
33495356 TTTTTTCTGTTTTTTA
1 TTTTTTCTGTTTTTTA
33495372 TTTTTT-TGTTTTTT
1 TTTTTTCTGTTTTTT
33495386 TGTTTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.03, C:0.03, G:0.07, T:0.87
Consensus pattern (16 bp):
TTTTTTCTGTTTTTTA
Found at i:33495386 original size:16 final size:17
Alignment explanation
Indices: 33495355--33495394 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
33495345 AGTTCAAGTT
33495355 TTTTTTTCTGTTTTTTA
1 TTTTTTTCTGTTTTTTA
* *
33495372 TTTTTTTGT-TTTTTTG
1 TTTTTTTCTGTTTTTTA
33495388 TTTTTTT
1 TTTTTTT
33495395 ATAGATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.03, C:0.03, G:0.07, T:0.88
Consensus pattern (17 bp):
TTTTTTTCTGTTTTTTA
Found at i:33495424 original size:27 final size:28
Alignment explanation
Indices: 33495394--33495450 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
33495384 TTTGTTTTTT
33495394 TATAGATTTTGGTAAATAAAAAAA-TTA
1 TATAGATTTTGGTAAATAAAAAAAGTTA
**
33495421 TATATTTTTTGGTAAATAAAAAAAGTTA
1 TATAGATTTTGGTAAATAAAAAAAGTTA
33495449 TA
1 TA
33495451 ACATTTTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (28 bp):
TATAGATTTTGGTAAATAAAAAAAGTTA
Found at i:33495457 original size:27 final size:27
Alignment explanation
Indices: 33495394--33495462 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
33495384 TTTGTTTTTT
*
33495394 TATAGATTTTGGTAAATAAAAAAATTA
1 TATACATTTTGGTAAATAAAAAAATTA
**
33495421 TATATTTTTTGGTAAATAAAAAAAGTTA
1 TATACATTTTGGTAAATAAAAAAA-TTA
*
33495449 TA-ACATTTTCGTAA
1 TATACATTTTGGTAA
33495463 TTTTTTATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
27 31 0.86
28 5 0.14
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (27 bp):
TATACATTTTGGTAAATAAAAAAATTA
Found at i:33496282 original size:14 final size:14
Alignment explanation
Indices: 33496263--33496291 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
33496253 ATTTTTTATT
33496263 TGAGTTGATCCAAA
1 TGAGTTGATCCAAA
33496277 TGAGTTGATCCAAA
1 TGAGTTGATCCAAA
33496291 T
1 T
33496292 AACTTGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (14 bp):
TGAGTTGATCCAAA
Found at i:33499682 original size:14 final size:13
Alignment explanation
Indices: 33499663--33499704 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
33499653 TTATCAAAAA
33499663 TTTTAAGAACACTT
1 TTTTAA-AACACTT
*
33499677 TTTTAAAA-AGTT
1 TTTTAAAACACTT
33499689 TTTTAATAACACTT
1 TTTTAA-AACACTT
33499703 TT
1 TT
33499705 CAACATCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 9 0.38
13 4 0.17
14 11 0.46
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.50
Consensus pattern (13 bp):
TTTTAAAACACTT
Found at i:33500482 original size:22 final size:22
Alignment explanation
Indices: 33500457--33500499 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
33500447 AGATTTTGAA
33500457 AATA-TAATAATTTAATGAATTT
1 AATACTAATAATTTAAT-AATTT
* *
33500479 AATACTTATATTTTAATAATT
1 AATACTAATAATTTAATAATT
33500500 ATTGAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
AATACTAATAATTTAATAATTT
Found at i:33504327 original size:126 final size:125
Alignment explanation
Indices: 33504102--33504343 Score: 346
Period size: 126 Copynumber: 1.9 Consensus size: 125
33504092 TGAGCTGCAG
* *
33504102 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGATAATTCCCATAG
1 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGACAATTCACATA-
* *
33504167 CCCTTCTAAGTTGGACGTGCTTGAAGGTGGAAATGATGAA-TCAGTGACAAACTCAGTTAGC
65 CCCTTCTAACTTGGACGTGCTTGAAGGAGGAAATGAT-AAGTCAGTGACAAACTCAGTTAGC
*
33504228 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATGGAAAGCTGGGGAAGGACAATGTCGACAT
1 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGACAAT-TC-ACAT
* * *
33504293 -CCCTT-TAAACTTGGATGTGGTTGAAGGAGGAAATGGTAAGTCAGTGACAAA
64 ACCCTTCT-AACTTGGACGTGCTTGAAGGAGGAAATGATAAGTCAGTGACAAA
33504344 ACCAATTAGC
Statistics
Matches: 104, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
125 3 0.03
126 96 0.92
127 2 0.02
128 3 0.03
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (125 bp):
AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGACAATTCACATAC
CCTTCTAACTTGGACGTGCTTGAAGGAGGAAATGATAAGTCAGTGACAAACTCAGTTAGC
Found at i:33511415 original size:26 final size:26
Alignment explanation
Indices: 33511386--33511439 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
33511376 TTGCACTAGG
33511386 TTTAATTGTATGCAATAGTTTTAAAC
1 TTTAATTGTATGCAATAGTTTTAAAC
33511412 TTTAATTGTATGCAATAGTTTTAAAC
1 TTTAATTGTATGCAATAGTTTTAAAC
33511438 TT
1 TT
33511440 GTTTTGCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.48
Consensus pattern (26 bp):
TTTAATTGTATGCAATAGTTTTAAAC
Found at i:33516103 original size:6 final size:6
Alignment explanation
Indices: 33516089--33516122 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
33516079 TTAGTAACGG
*
33516089 AGTAGC AGTAAC AGTAAC AGTAAC AGTAAC AGTA
1 AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTA
33516123 TTCGACACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.18
Consensus pattern (6 bp):
AGTAAC
Found at i:33516166 original size:45 final size:45
Alignment explanation
Indices: 33516100--33516206 Score: 162
Period size: 45 Copynumber: 2.4 Consensus size: 45
33516090 GTAGCAGTAA
*
33516100 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGT-GCTGAAT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTATC-GAAT
* *
33516145 CTGTAACAGTAACAGTAACAGTATTCGACACATAAAGTATCGAAT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTATCGAAT
*
33516190 CAGTAACAATAACAGTA
1 CAGTAACAGTAACAGTA
33516207 GTCGGCACAT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 55 0.98
46 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (45 bp):
CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTATCGAAT
Found at i:33516194 original size:39 final size:43
Alignment explanation
Indices: 33516102--33516218 Score: 136
Period size: 45 Copynumber: 2.8 Consensus size: 43
33516092 AGCAGTAACA
*
33516102 GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCT
1 GTAACAGTAACAGTAACAGTATTCGACACATAAAG-GCT-AATCT
33516147 GTAACAGTAACAGTAACAGTATTCGACACATAAA-G-T-ATC-
1 GTAACAGTAACAGTAACAGTATTCGACACATAAAGGCTAATCT
* * *
33516186 G-AATCAGTAACAATAACAGTAGTCGGCACATAA
1 GTAA-CAGTAACAGTAACAGTATTCGACACATAA
33516219 GTGCCTGATC
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
38 2 0.03
39 27 0.40
40 3 0.04
42 1 0.01
43 1 0.01
45 33 0.49
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (43 bp):
GTAACAGTAACAGTAACAGTATTCGACACATAAAGGCTAATCT
Found at i:33517223 original size:16 final size:17
Alignment explanation
Indices: 33517198--33517229 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
33517188 TAAACTCTAG
33517198 TTTTTCCTTTCTTTCTC
1 TTTTTCCTTTCTTTCTC
33517215 TTTTT-CTTTCTTTCT
1 TTTTTCCTTTCTTTCT
33517230 TTCTCCCCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTCCTTTCTTTCTC
Found at i:33522325 original size:24 final size:24
Alignment explanation
Indices: 33522298--33522351 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
33522288 TTTTATAAGA
*
33522298 ATTAAAATATAATTTTATTATTTT
1 ATTAAAATATAATTTTATAATTTT
** *
33522322 ATTAACTTATATTTTTATAATTTT
1 ATTAAAATATAATTTTATAATTTT
33522346 -TTAAAA
1 ATTAAAA
33522352 GGATTAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTAAAATATAATTTTATAATTTT
Found at i:33528275 original size:29 final size:29
Alignment explanation
Indices: 33528236--33528293 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
33528226 ACAAGAGAAG
33528236 TATAGACTATGTCTATTTATAGGTTTGTA
1 TATAGACTATGTCTATTTATAGGTTTGTA
*
33528265 TATAGACTATGTTTATTTATAGGTTTGTA
1 TATAGACTATGTCTATTTATAGGTTTGTA
33528294 AAACAATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.05, G:0.17, T:0.50
Consensus pattern (29 bp):
TATAGACTATGTCTATTTATAGGTTTGTA
Found at i:33529014 original size:2 final size:2
Alignment explanation
Indices: 33529007--33529033 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
33528997 GGGAGGAGTT
33529007 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
33529034 GTATTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33530983 original size:83 final size:83
Alignment explanation
Indices: 33530843--33531008 Score: 287
Period size: 83 Copynumber: 2.0 Consensus size: 83
33530833 TTAAAGATTA
* * * *
33530843 TATTGTTAAGAGAGACAACCTCAAACTCTGATCATGCTTAGAGTTTTTGAGAAACGTATTCCGAC
1 TATTGTTAAGAGAGACAACCTCAAACTCCGATCATGCATAGAGATTTTGAGAAACGTATTCCAAC
33530908 TAATCTTTACTTTAGCTC
66 TAATCTTTACTTTAGCTC
*
33530926 TATTGTTAAGAGAGACAACCTCAAACTCCGATCATGCATAGAGATTTTGAGATACGTATTCCAAC
1 TATTGTTAAGAGAGACAACCTCAAACTCCGATCATGCATAGAGATTTTGAGAAACGTATTCCAAC
33530991 TAATCTTTACTTTAGCTC
66 TAATCTTTACTTTAGCTC
33531009 CACTCCACGT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (83 bp):
TATTGTTAAGAGAGACAACCTCAAACTCCGATCATGCATAGAGATTTTGAGAAACGTATTCCAAC
TAATCTTTACTTTAGCTC
Found at i:33533163 original size:39 final size:38
Alignment explanation
Indices: 33533058--33533176 Score: 103
Period size: 39 Copynumber: 3.0 Consensus size: 38
33533048 AGCGGCGACT
* * *
33533058 TTAGCGGCGTTTGAATAAAAAACGCCGCTAAAGATCAATCA
1 TTAGCGGCGTTT--ATTAAAAACGCCGCTAAAAAT-AAGCA
* ***
33533099 TTAGCGGCGCTCTATGGCAAACGCCGCTAAAAATAAGCA
1 TTAGCGGCG-TTTATTAAAAACGCCGCTAAAAATAAGCA
* *
33533138 TTAGCGGCGTTTTTTAAAAAGCGCCGCAAAAAACTAAGC
1 TTAGCGGCGTTTATTAAAAA-CGCCGCTAAAAA-TAAGC
33533177 CAAACGACGC
Statistics
Matches: 63, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
38 6 0.10
39 24 0.38
40 22 0.35
41 9 0.14
42 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (38 bp):
TTAGCGGCGTTTATTAAAAACGCCGCTAAAAATAAGCA
Found at i:33533369 original size:73 final size:73
Alignment explanation
Indices: 33533250--33533410 Score: 236
Period size: 73 Copynumber: 2.2 Consensus size: 73
33533240 GCTCAGGGCT
* *
33533250 TTTAGTGGCGTTTTTGAGAAAGCGCCGCAAAAAGACATAAGCCCAACGGCGCCGTTTTCTGAGCT
1 TTTAGTGGCGTTTTTGAGAAAGCACCGCAAAAAGACATAAGCCCAACGACGCCGTTTTCTGAGCT
33533315 TTCGGGGA
66 TTCGGGGA
* * *
33533323 TTTAGCGGCGCTTTTGATAAAGCACCGCAAAATA-ATC-TAAGCCCAACGACGCCGTTTTCTGAG
1 TTTAGTGGCGTTTTTGAGAAAGCACCGCAAAA-AGA-CATAAGCCCAACGACGCCGTTTTCTGAG
*
33533386 CTTTCGTGGA
64 CTTTCGGGGA
33533396 TTTAGTGGCGTTTTT
1 TTTAGTGGCGTTTTT
33533411 TAGGAAGCGC
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
73 76 0.97
74 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (73 bp):
TTTAGTGGCGTTTTTGAGAAAGCACCGCAAAAAGACATAAGCCCAACGACGCCGTTTTCTGAGCT
TTCGGGGA
Found at i:33533533 original size:188 final size:186
Alignment explanation
Indices: 33533138--33533533 Score: 566
Period size: 188 Copynumber: 2.1 Consensus size: 186
33533128 AAAATAAGCA
*
33533138 TTAGCGGCGTTTTTTAA-AAAGCGCCGCAAAAAACTAAGCCAAACGACGCCTTATTCTGAGCTTT
1 TTAGCGGCG-TTTTTAATAAAGCACCGCAAAAAACTAAGCCAAACGACGCCTTATTCTGAGCTTT
* *
33533202 CGCAGATTTAGTGGCGTTTTTTAGTAAGCGCCGCTAATGCTCAGGGCTTTTAGTGGCGTTTTTGA
65 CGCAGATTTAGTGGCGTTTTTTAGGAAGCGCCGCTAATGCTCAGGGCTTTTAGCGGCGTTTTTGA
* * **
33533267 GAAAGCGCCGCAAAAAGACATAAGCCCAACGGCGCCGTTTTCTGAGCTTTCGGGGAT
130 GAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGAGCTTTCACGGAT
* * *
33533324 TTAGCGGCGCTTTTGATAAAGCACCGCAAAATAATCTAAGCCCAACGACGCCGTT-TTCTGAGCT
1 TTAGCGGCGTTTTTAATAAAGCACCGCAAAA-AA-CTAAGCCAAACGACGCC-TTATTCTGAGCT
** *
33533388 TTCGTGGATTTAGTGGCGTTTTTTAGGAAGCGCCGCTAATGCTCAGGGCTTTT-GCGGTGTTTTT
63 TTCGCAGATTTAGTGGCGTTTTTTAGGAAGCGCCGCTAATGCTCAGGGCTTTTAGCGGCGTTTTT
**
33533452 GATCAAGCGCCGCAAAATAAAC-TAAGCCCAACGACGCCGTTTTCTGAGCTTTCACGGAT
128 GAGAAAGCGCCGCAAAA-AAACATAAGCCCAACGACGCCGTTTTCTGAGCTTTCACGGAT
*
33533511 TTAGTGGCGTTTCTTAATAAAGC
1 TTAGCGGCGTTT-TTAATAAAGC
33533534 CGCTAATGCT
Statistics
Matches: 186, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
185 5 0.03
186 22 0.12
187 70 0.38
188 87 0.47
189 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (186 bp):
TTAGCGGCGTTTTTAATAAAGCACCGCAAAAAACTAAGCCAAACGACGCCTTATTCTGAGCTTTC
GCAGATTTAGTGGCGTTTTTTAGGAAGCGCCGCTAATGCTCAGGGCTTTTAGCGGCGTTTTTGAG
AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGAGCTTTCACGGAT
Found at i:33533718 original size:227 final size:228
Alignment explanation
Indices: 33533323--33533750 Score: 646
Period size: 227 Copynumber: 1.9 Consensus size: 228
33533313 CTTTCGGGGA
* * * *
33533323 TTTAGCGGCGCTTTTGATAAAGCACCGCAAAATAATCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCACTTTTGAGAAAGCACCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTAAGCT
* * * *
33533388 TTCGTGGATTTAGTGGCGTTTTTTAGGAAGCGCCGCTAATGCTCAGGGCTTTTGCGGTGTTTTTG
66 TTCGCGGATTTAGTGGCGTTTTTTAGGAAGCGCCGCTAATGCTCAGGGCCTTAGCGGTGTTTGTG
**
33533453 ATCAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTGAGCTTTC-ACGGATTTAGTG
131 AGAAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGACGGATTTAGTG
33533517 GCGTTTCTTAATAAAGCCGCTAATGCTGAGGGC
196 GCGTTTCTTAATAAAGCCGCTAATGCTGAGGGC
* * *
33533550 TTTAGCGGCATTTTTGAGGAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTAAGCT
1 TTTAGCGGCACTTTTGAGAAAGCACCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTAAGCT
* *
33533615 TTTGCGGATTTAGTGTCGTTTTTTAGGATA-CGCCGCTAATGCTCAGGGCCTTAGCGGTGTTTGT
66 TTCGCGGATTTAGTGGCGTTTTTTAGGA-AGCGCCGCTAATGCTCAGGGCCTTAGCGGTGTTTGT
* * **
33533679 GAGAAAGCGCCGCAAAA-AGACATAAGCCCAATGACGCCGTTTTCTGAGCTTTCGGGGGATTTAG
130 GAGAAAGCGCCGCAAAATAAAC-TAAGCCCAACGACGCCGTTTTCTGAGCTTTCGACGGATTTAG
33533743 TGGCGTTT
194 TGGCGTTT
33533751 TTTAGGAAAG
Statistics
Matches: 179, Mismatches: 19, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
226 3 0.02
227 159 0.89
228 17 0.09
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (228 bp):
TTTAGCGGCACTTTTGAGAAAGCACCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTAAGCT
TTCGCGGATTTAGTGGCGTTTTTTAGGAAGCGCCGCTAATGCTCAGGGCCTTAGCGGTGTTTGTG
AGAAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGACGGATTTAGTG
GCGTTTCTTAATAAAGCCGCTAATGCTGAGGGC
Found at i:33533722 original size:114 final size:115
Alignment explanation
Indices: 33533323--33533766 Score: 601
Period size: 114 Copynumber: 3.9 Consensus size: 115
33533313 CTTTCGGGGA
* * * * *
33533323 TTTAGCGGCGCTTTTGATAAAGCACCGCAAAATAATCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGTGTTTTTGAGAAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTGAGCT
*
33533388 TTCGTGGATTTAGTGGCGTTTTTTAGGA-AGCGCCGCTAATGCTCAGGGC
66 TTCGCGGATTTAGTGGCGTTTTTTAGGATAGCGCCGCTAATGCTCAGGGC
* **
33533437 TTTTGCGGTGTTTTTGATCAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGTGTTTTTGAGAAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTGAGCT
* * ** *
33533502 TTCACGGATTTAGTGGCGTTTCTTA--ATAAAGCCGCTAATGCTGAGGGC
66 TTCGCGGATTTAGTGGCGTTTTTTAGGATAGCGCCGCTAATGCTCAGGGC
** * *
33533550 TTTAGCGGCATTTTTGAGGAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTAAGCT
1 TTTAGCGGTGTTTTTGAGAAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTGAGCT
* *
33533615 TTTGCGGATTTAGTGTCGTTTTTTAGGATA-CGCCGCTAATGCTCAGGGC
66 TTCGCGGATTTAGTGGCGTTTTTTAGGATAGCGCCGCTAATGCTCAGGGC
* * * *
33533664 CTTAGCGGTGTTTGTGAGAAAGCGCCGCAAAA-AGACATAAGCCCAATGACGCCGTTTTCTGAGC
1 TTTAGCGGTGTTTTTGAGAAAGCGCCGCAAAATAAAC-TAAGCCCAACGACGCCGTTTTCTGAGC
* *
33533728 TTTCGGGGGATTTAGTGGCGTTTTTTAGGAAAGCGCCGC
65 TTTC-GCGGATTTAGTGGCGTTTTTTAGGATAGCGCCGC
33533767 AAAAAAAACA
Statistics
Matches: 288, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
112 1 0.00
113 101 0.35
114 153 0.53
115 27 0.09
116 6 0.02
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (115 bp):
TTTAGCGGTGTTTTTGAGAAAGCGCCGCAAAATAAACTAAGCCCAACGACGCCGTTTTCTGAGCT
TTCGCGGATTTAGTGGCGTTTTTTAGGATAGCGCCGCTAATGCTCAGGGC
Found at i:33533905 original size:20 final size:21
Alignment explanation
Indices: 33533880--33533920 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
33533870 TTATGGATTA
*
33533880 GAGA-TTATGGTTTAAGGGTT
1 GAGATTTAAGGTTTAAGGGTT
*
33533900 GAGATTTAAGGTTTAGGGGTT
1 GAGATTTAAGGTTTAAGGGTT
33533921 AACTAGAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39
Consensus pattern (21 bp):
GAGATTTAAGGTTTAAGGGTT
Found at i:33536117 original size:28 final size:28
Alignment explanation
Indices: 33536080--33536230 Score: 108
Period size: 28 Copynumber: 5.0 Consensus size: 28
33536070 ATACTTACTT
33536080 AACTTACATAATACACCACTTACATAAA
1 AACTTACATAATACACCACTTACATAAA
* * *
33536108 AACTTGCATAATACA-TAGCCTACATAACTTA
1 AACTTACATAATACACCA-CTTACATAA---A
33536139 CTTAACTTACATAATACACCACTTACATAAA
1 ---AACTTACATAATACACCACTTACATAAA
* * *
33536170 AACTTGCATAATACA-TAGCCTACATAACTTA
1 AACTTACATAATACACCA-CTTACATAA---A
33536201 CTTAACTTACATAATACACCACTTACATAA
1 ---AACTTACATAATACACCACTTACATAA
33536231 CTTAAATAAC
Statistics
Matches: 95, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
27 2 0.02
28 44 0.46
31 3 0.03
34 44 0.46
35 2 0.02
ACGTcount: A:0.44, C:0.25, G:0.03, T:0.28
Consensus pattern (28 bp):
AACTTACATAATACACCACTTACATAAA
Found at i:33536149 original size:62 final size:62
Alignment explanation
Indices: 33536072--33536230 Score: 318
Period size: 62 Copynumber: 2.6 Consensus size: 62
33536062 AGGATTAAAT
33536072 ACTTACTTAACTTACATAATACACCACTTACATAAAAACTTGCATAATACATAGCCTACATA
1 ACTTACTTAACTTACATAATACACCACTTACATAAAAACTTGCATAATACATAGCCTACATA
33536134 ACTTACTTAACTTACATAATACACCACTTACATAAAAACTTGCATAATACATAGCCTACATA
1 ACTTACTTAACTTACATAATACACCACTTACATAAAAACTTGCATAATACATAGCCTACATA
33536196 ACTTACTTAACTTACATAATACACCACTTACATAA
1 ACTTACTTAACTTACATAATACACCACTTACATAA
33536231 CTTAAATAAC
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 97 1.00
ACGTcount: A:0.43, C:0.25, G:0.03, T:0.30
Consensus pattern (62 bp):
ACTTACTTAACTTACATAATACACCACTTACATAAAAACTTGCATAATACATAGCCTACATA
Found at i:33536152 original size:34 final size:34
Alignment explanation
Indices: 33536108--33536251 Score: 142
Period size: 34 Copynumber: 4.4 Consensus size: 34
33536098 CTTACATAAA
* *
33536108 AACTTGCATAATACA-TAGCCTACATAACTTACTT
1 AACTTACATAATACACCA-CCTACATAACTTACTT
*
33536142 AACTTACATAATACACCACTTACATAA---A---
1 AACTTACATAATACACCACCTACATAACTTACTT
* *
33536170 AACTTGCATAATACA-TAGCCTACATAACTTACTT
1 AACTTACATAATACACCA-CCTACATAACTTACTT
* **
33536204 AACTTACATAATACACCACTTACATAACTTAAAT
1 AACTTACATAATACACCACCTACATAACTTACTT
33536238 AACTTACATAATAC
1 AACTTACATAATAC
33536252 TTAACTTTAA
Statistics
Matches: 90, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
27 1 0.01
28 22 0.24
31 2 0.02
34 63 0.70
35 2 0.02
ACGTcount: A:0.44, C:0.24, G:0.03, T:0.30
Consensus pattern (34 bp):
AACTTACATAATACACCACCTACATAACTTACTT
Found at i:33536218 original size:25 final size:24
Alignment explanation
Indices: 33536190--33536286 Score: 90
Period size: 25 Copynumber: 3.9 Consensus size: 24
33536180 ATACATAGCC
* *
33536190 TACATAACTTACTTAACTTACATAA
1 TACACAACTTACATAACTTA-ATAA
*
33536215 TACACCACTTACATAACTTAAATAA
1 TACACAACTTACATAACTT-AATAA
* *
33536240 CTTACATAA--TACTTAACTTTAATAA
1 --TACACAACTTACATAAC-TTAATAA
33536265 TACACAACTTACATAACTTAAT
1 TACACAACTTACATAACTTAAT
33536287 TACATTATAC
Statistics
Matches: 58, Mismatches: 8, Indels: 13
0.73 0.10 0.16
Matches are distributed among these distances:
23 6 0.10
24 5 0.09
25 39 0.67
26 3 0.05
27 5 0.09
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (24 bp):
TACACAACTTACATAACTTAATAA
Found at i:33536233 original size:9 final size:9
Alignment explanation
Indices: 33536072--33536284 Score: 96
Period size: 9 Copynumber: 24.6 Consensus size: 9
33536062 AGGATTAAAT
*
33536072 ACTTACTTA
1 ACTTACATA
33536081 ACTTACATA
1 ACTTACATA
**
33536090 A--TACACC
1 ACTTACATA
33536097 ACTTACATAAAA
1 ACTTACAT---A
*
33536109 ACTTGCATA
1 ACTTACATA
33536118 A--TACATA
1 ACTTACATA
* *
33536125 GCCTACATA
1 ACTTACATA
*
33536134 ACTTACTTA
1 ACTTACATA
33536143 ACTTACATA
1 ACTTACATA
**
33536152 A--TACACC
1 ACTTACATA
33536159 ACTTACATAAAA
1 ACTTACAT---A
*
33536171 ACTTGCATA
1 ACTTACATA
33536180 A--TACATA
1 ACTTACATA
* *
33536187 GCCTACATA
1 ACTTACATA
*
33536196 ACTTACTTA
1 ACTTACATA
33536205 ACTTACATA
1 ACTTACATA
**
33536214 A--TACACC
1 ACTTACATA
33536221 ACTTACATA
1 ACTTACATA
*
33536230 ACTTAAATA
1 ACTTACATA
33536239 ACTTACATA
1 ACTTACATA
*
33536248 A--TACTTA
1 ACTTACATA
33536255 ACTTTA-ATA
1 AC-TTACATA
*
33536264 A--TACACA
1 ACTTACATA
33536271 ACTTACATA
1 ACTTACATA
33536280 ACTTA
1 ACTTA
33536285 ATTACATTAT
Statistics
Matches: 149, Mismatches: 33, Indels: 44
0.66 0.15 0.19
Matches are distributed among these distances:
6 2 0.01
7 34 0.23
9 97 0.65
10 2 0.01
12 14 0.09
ACGTcount: A:0.44, C:0.23, G:0.02, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:33538818 original size:43 final size:43
Alignment explanation
Indices: 33538737--33538945 Score: 201
Period size: 43 Copynumber: 4.9 Consensus size: 43
33538727 GTTTTTAAAA
* *
33538737 AAAGCGCCGCTAAAAGAACCTGACCTTTAGTGGCGTTTGTGGAG
1 AAAGCGCCGCT-AAAGAACATGACCTTTAGCGGCGTTTGTGGAG
* * * *
33538781 AAAGCGCCGCCAAAGAACATGATCTTTAGCGGTGTTTGAGGA-
1 AAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAG
* * *
33538823 ATAAGCGCCGCTAAAGTACATGACCTTTAGCGGTGTTTATAGG-G
1 A-AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGT-GGAG
* * * * * **
33538867 AATGCGCCACTAAAGACCCTGACCTTTAGCGGAGTTT-TTTATG
1 AAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGA-G
*
33538910 -TAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTT
1 AAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTT
33538946 ATAAAAATAA
Statistics
Matches: 135, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
42 32 0.24
43 90 0.67
44 13 0.10
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAG
Found at i:33538894 original size:86 final size:87
Alignment explanation
Indices: 33538738--33538948 Score: 234
Period size: 86 Copynumber: 2.4 Consensus size: 87
33538728 TTTTTAAAAA
* * * *
33538738 AAGCGCCGCTAAAAGAACCTGACCTTTAGTGGCGTTTGT-GGAGAAAGCGCCGCCAAAGAACATG
1 AAGCGCCGCT-AAAGAACATGACCTTTAGCGGCGTTTATAGGAGAAAGCGCCACCAAAGAACATG
*
33538802 ATCTTTAGC-G-GTGTTTGAGGAAT
65 ACCTTTAGCGGAGTGTTTGAGG--T
* * * * * *
33538825 AAGCGCCGCTAAAGTACATGACCTTTAGCGGTGTTTATAGG-GAATGCGCCACTAAAGACCCTGA
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTATAGGAGAAAGCGCCACCAAAGAACATGA
* * *
33538889 CCTTTAGCGGAGTTTTTTATGT
66 CCTTTAGCGGAGTGTTTGAGGT
33538911 -AGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTATA
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTATA
33538949 AAAATAAGCG
Statistics
Matches: 105, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
85 36 0.34
86 49 0.47
87 13 0.12
88 7 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (87 bp):
AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTATAGGAGAAAGCGCCACCAAAGAACATGA
CCTTTAGCGGAGTGTTTGAGGT
Found at i:33546375 original size:2 final size:2
Alignment explanation
Indices: 33546368--33546407 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
33546358 TGCAATAATC
** *
33546368 AT AT AT AT AT AT AT AT AT AT AT AT AT GC AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33546408 GTATTGAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (2 bp):
AT
Found at i:33562982 original size:18 final size:18
Alignment explanation
Indices: 33562959--33563057 Score: 58
Period size: 18 Copynumber: 5.4 Consensus size: 18
33562949 ATTTTAGATT
33562959 TTTTTTTAAAATTTTAAA
1 TTTTTTTAAAATTTTAAA
* *
33562977 TTTTTTTATATATTTTTTAA
1 TTTTTTTA-A-AATTTTAAA
*
33562997 -TTTTTTATAATTTTTAAA
1 TTTTTTTA-AAATTTTAAA
*** * *
33563015 -AAATATAAAATTTGAAA
1 TTTTTTTAAAATTTTAAA
* *
33563032 TTTTTATAAATATTTTGAA
1 TTTTTTTAAA-ATTTTAAA
33563051 TTTTTTT
1 TTTTTTT
33563058 TCTAACTTTT
Statistics
Matches: 62, Mismatches: 15, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
17 8 0.13
18 25 0.40
19 22 0.35
20 7 0.11
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTTTTTAAAATTTTAAA
Found at i:33562993 original size:20 final size:19
Alignment explanation
Indices: 33562959--33563014 Score: 71
Period size: 18 Copynumber: 3.0 Consensus size: 19
33562949 ATTTTAGATT
*
33562959 TTTTTTTA-AAATTTTAAA
1 TTTTTTTATAATTTTTAAA
*
33562977 TTTTTTTATATATTTTTTAA
1 TTTTTTTATA-ATTTTTAAA
33562997 -TTTTTTATAATTTTTAAA
1 TTTTTTTATAATTTTTAAA
33563015 AAATATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 16 0.48
19 10 0.30
20 7 0.21
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTTTATAATTTTTAAA
Found at i:33565508 original size:21 final size:22
Alignment explanation
Indices: 33565470--33565511 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
33565460 ATATATATAA
*
33565470 TTTAAAAATAATATAATATATTT
1 TTTAAAAAT-ATAAAATATATTT
33565493 TTTAAAAAT-TAAAATATAT
1 TTTAAAAATATAAAATATAT
33565512 ATGTATAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
23 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TTTAAAAATATAAAATATATTT
Found at i:33565511 original size:23 final size:22
Alignment explanation
Indices: 33565459--33565513 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
33565449 GTAATAAACG
33565459 AATATATATAATTTAAAAATAA
1 AATATATATAATTTAAAAATAA
* **
33565481 TATAATATATTTTTTAAAAATTAA
1 AAT-ATATATAATTTAAAAA-TAA
33565505 AATATATAT
1 AATATATAT
33565514 GTATAGACCT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 2 0.07
23 20 0.74
24 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
AATATATATAATTTAAAAATAA
Found at i:33565741 original size:89 final size:91
Alignment explanation
Indices: 33565615--33565790 Score: 257
Period size: 89 Copynumber: 2.0 Consensus size: 91
33565605 TTAAGCTCTA
* * *
33565615 TTTTTTTTACACTCATTTTGGTACTTGAACTTTCAAAATGCATCAAAAAGACTCTCAAA-CCTTT
1 TTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAAGCCTTT
33565679 -AAAAAAAACAATTAAGCCCCTAGTT
66 CAAAAAAAACAATTAAGCCCCTAGTT
* * **
33565704 TTTTTTTTGCACTCAATTGGGTCCTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAAGTTTTT
1 TTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAAGCCTTT
* *
33565769 CCAAAAAAGCAATTAAGCCCCT
66 CAAAAAAAACAATTAAGCCCCT
33565791 GCTTTTATTA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
89 54 0.71
90 3 0.04
91 19 0.25
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.34
Consensus pattern (91 bp):
TTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAAGCCTTT
CAAAAAAAACAATTAAGCCCCTAGTT
Found at i:33565917 original size:10 final size:10
Alignment explanation
Indices: 33565904--33566001 Score: 68
Period size: 9 Copynumber: 10.4 Consensus size: 10
33565894 TAAAAACTAG
33565904 AAAAATATAT
1 AAAAATATAT
*
33565914 AAAAATCGT-T
1 AAAAAT-ATAT
33565924 AAAAATATA-
1 AAAAATATAT
*
33565933 AAAAAT-TGT
1 AAAAATATAT
* *
33565942 AAAATTTTAT
1 AAAAATATAT
*
33565952 AAAAATCGTA-
1 AAAAAT-ATAT
33565962 AAAAAT-TAT
1 AAAAATATAT
33565971 AAAAA-ATAT
1 AAAAATATAT
*
33565980 AGAAATATA-
1 AAAAATATAT
33565989 AAAAAT-TAT
1 AAAAATATAT
33565998 AAAA
1 AAAA
33566002 TTTTATAAAG
Statistics
Matches: 70, Mismatches: 9, Indels: 19
0.71 0.09 0.19
Matches are distributed among these distances:
8 5 0.07
9 33 0.47
10 29 0.41
11 3 0.04
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (10 bp):
AAAAATATAT
Found at i:33565976 original size:20 final size:20
Alignment explanation
Indices: 33565883--33566048 Score: 95
Period size: 19 Copynumber: 8.7 Consensus size: 20
33565873 ATTCAAATAT
* *
33565883 TAAAAAGTTATTAAAAA-C-
1 TAAAAAATTATAAAAAATCG
33565901 TAGAAAAA-TATATAAAAATCG
1 TA-AAAAATTATA-AAAAATCG
* *
33565922 TTAAAAA-TATAAAAAATTG
1 TAAAAAATTATAAAAAATCG
**
33565941 TAAAATTTTAT-AAAAATCG
1 TAAAAAATTATAAAAAATCG
*
33565960 TAAAAAATTATAAAAAAT-A
1 TAAAAAATTATAAAAAATCG
*
33565979 T-AGAAA-TATAAAAAAT--
1 TAAAAAATTATAAAAAATCG
* * * *
33565995 TATAAAATTTTATAAAGTCG
1 TAAAAAATTATAAAAAATCG
*
33566015 TAAGAAAATTATACAAAAT-G
1 TAA-AAAATTATAAAAAATCG
33566035 TAAAGAAA-TATAAA
1 TAAA-AAATTATAAA
33566049 TTTCTTAATA
Statistics
Matches: 114, Mismatches: 22, Indels: 23
0.72 0.14 0.14
Matches are distributed among these distances:
16 1 0.01
17 13 0.11
18 16 0.14
19 43 0.38
20 28 0.25
21 13 0.11
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (20 bp):
TAAAAAATTATAAAAAATCG
Found at i:33566006 original size:56 final size:58
Alignment explanation
Indices: 33565926--33566048 Score: 180
Period size: 56 Copynumber: 2.2 Consensus size: 58
33565916 AAATCGTTAA
* *
33565926 AAATATAAAAAATTGTAAAATTTTATAAAAATCGTAA-AAAATTATA-AAAA-ATATAG
1 AAATATAAAAAATTATAAAATTTTAT-AAAATCGTAAGAAAATTATACAAAATATAAAG
* *
33565982 AAATATAAAAAATTATAAAATTTTATAAAGTCGTAAGAAAATTATACAAAATGTAAAG
1 AAATATAAAAAATTATAAAATTTTATAAAATCGTAAGAAAATTATACAAAATATAAAG
33566040 AAATATAAA
1 AAATATAAA
33566049 TTTCTTAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
55 9 0.15
56 34 0.57
57 4 0.07
58 13 0.22
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (58 bp):
AAATATAAAAAATTATAAAATTTTATAAAATCGTAAGAAAATTATACAAAATATAAAG
Found at i:33566436 original size:22 final size:22
Alignment explanation
Indices: 33566409--33566453 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
33566399 GCTTAATTGC
33566409 TTTTTTGAAAAATTTTGAAAGT
1 TTTTTTGAAAAATTTTGAAAGT
***
33566431 TTTTTTGATGCATTTTGAAAGT
1 TTTTTTGAAAAATTTTGAAAGT
33566453 T
1 T
33566454 CAAGTACCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.02, G:0.16, T:0.53
Consensus pattern (22 bp):
TTTTTTGAAAAATTTTGAAAGT
Found at i:33567055 original size:11 final size:11
Alignment explanation
Indices: 33567004--33567053 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
33566994 CTCAACAACA
*
33567004 TCTCAATTTCC
1 TCTCAATTTGC
33567015 TCTCAATTTGC
1 TCTCAATTTGC
33567026 TCTCAATTTGC
1 TCTCAATTTGC
*
33567037 TTCTAAATTT-C
1 -TCTCAATTTGC
33567048 TCTCAA
1 TCTCAA
33567054 ATCCATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
10 5 0.14
11 22 0.63
12 8 0.23
ACGTcount: A:0.22, C:0.28, G:0.04, T:0.46
Consensus pattern (11 bp):
TCTCAATTTGC
Found at i:33567096 original size:49 final size:51
Alignment explanation
Indices: 33567015--33567112 Score: 139
Period size: 49 Copynumber: 2.0 Consensus size: 51
33567005 CTCAATTTCC
*
33567015 TCTCAATTTGCTCTCAATTTGCTTCTAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTGCTCTCAATTTCCTTCTAAATTTCTCTCAAATCCATATTTAA
* *
33567066 TCTCAATTTGCT-T-AATTTCC-TCTCAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTGCTCTCAATTTCCTTCT-AAATTTCTCTCAAATCCATATTT
33567113 TTTAATTATT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
48 3 0.07
49 27 0.63
50 1 0.02
51 12 0.28
ACGTcount: A:0.26, C:0.24, G:0.03, T:0.47
Consensus pattern (51 bp):
TCTCAATTTGCTCTCAATTTCCTTCTAAATTTCTCTCAAATCCATATTTAA
Found at i:33571474 original size:215 final size:218
Alignment explanation
Indices: 33571126--33571721 Score: 1030
Period size: 215 Copynumber: 2.8 Consensus size: 218
33571116 AACACTCTAA
* *
33571126 ACCCT-AACCCTAACCCTAACTCTAATCTGATTTTTAAATTTTTTAATTAAATTACTCAAGTAAC
1 ACCCTAAACCCTAACCCTAACCCTAATCTAATTTTTAAATTTTTTAATTAAATTACTCAAGTAAC
33571190 CCTAAACCCTAATTTAATTGATTTTTTCATAAAAGATAATAAACACGAAAACTAATCCAATTTTG
66 CCTAAACCCTAATTTAATTGATTTTTTCATAAAAGATAATAAACACGAAAACTAATCCAATTTTG
33571255 AAAAATTTATAAATAATTTAATTGACAAACCCTAAACTCTAAACCCTAATTTATTT-ATTTTTCC
131 AAAAATTTATAAATAATTTAATTGACAAACCCTAAACTCTAAACCCTAATTTATTTGATTTTTCC
33571319 TT-AAAACCCTTAACTTAAAAAC
196 TTAAAAACCCTTAACTTAAAAAC
*
33571341 ACCCTAAACCTTAACCCTAACCCTAATCTAATTTTT-AATTTTTTAATTAAATTACTCAAGTAAC
1 ACCCTAAACCCTAACCCTAACCCTAATCTAATTTTTAAATTTTTTAATTAAATTACTCAAGTAAC
33571405 CCTAAACCCTAATTTAATTGATTTTTTCATAAAAGATAATAAACACGAAAACTAATCCAATTTTG
66 CCTAAACCCTAATTTAATTGATTTTTTCATAAAAGATAATAAACACGAAAACTAATCCAATTTTG
33571470 AAAAATTTATAAATAATTTAATTGACAAACCCTAAACTCTAAACCCTAATTTATTTGATTTTTCC
131 AAAAATTTATAAATAATTTAATTGACAAACCCTAAACTCTAAACCCTAATTTATTTGATTTTTCC
*
33571535 TTAAAAACTCTTAACTTAAAAAC
196 TTAAAAACCCTTAACTTAAAAAC
*
33571558 ACCCTAAACCCTAACCCTAACCCTAATCTAATTTTTCAAAATTTTTAATTAAATTACTCAAGTAA
1 ACCCTAAACCCTAACCCTAACCCTAATCTAATTTTT-AAATTTTTTAATTAAATTACTCAAGTAA
* * * * *
33571623 CCCTACACCCTAATTTAAGTGA--TTTT-AAAAAAAATAATAAACACGAAAACTAATCCAATTAT
65 CCCTAAACCCTAATTTAATTGATTTTTTCATAAAAGATAATAAACACGAAAACTAATCCAATTTT
33571685 GAAAAATTTAT--ATAATTTAATTGACAAACCCTAAACT
130 GAAAAATTTATAAATAATTTAATTGACAAACCCTAAACT
33571722 AGAGGTGTTC
Statistics
Matches: 365, Mismatches: 11, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
214 26 0.07
215 154 0.42
216 81 0.22
217 58 0.16
219 46 0.13
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.35
Consensus pattern (218 bp):
ACCCTAAACCCTAACCCTAACCCTAATCTAATTTTTAAATTTTTTAATTAAATTACTCAAGTAAC
CCTAAACCCTAATTTAATTGATTTTTTCATAAAAGATAATAAACACGAAAACTAATCCAATTTTG
AAAAATTTATAAATAATTTAATTGACAAACCCTAAACTCTAAACCCTAATTTATTTGATTTTTCC
TTAAAAACCCTTAACTTAAAAAC
Found at i:33572167 original size:14 final size:14
Alignment explanation
Indices: 33572145--33572204 Score: 66
Period size: 14 Copynumber: 4.1 Consensus size: 14
33572135 TTTAATTTTT
33572145 AACCATAAACCCTA
1 AACCATAAACCCTA
*
33572159 AACCTTAAACCCTA
1 AACCATAAACCCTA
***
33572173 AAAGTTAAAACCCTAA
1 AACCAT-AAACCCT-A
33572189 AACCATAAACCCTA
1 AACCATAAACCCTA
33572203 AA
1 AA
33572205 ACCCCAAAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
14 20 0.53
15 14 0.37
16 4 0.11
ACGTcount: A:0.52, C:0.30, G:0.02, T:0.17
Consensus pattern (14 bp):
AACCATAAACCCTA
Found at i:33572191 original size:8 final size:8
Alignment explanation
Indices: 33572151--33572214 Score: 55
Period size: 8 Copynumber: 8.5 Consensus size: 8
33572141 TTTTAACCAT
33572151 AAACCCT-
1 AAACCCTA
*
33572158 AAA-CCTT
1 AAACCCTA
33572165 AAACCCTA
1 AAACCCTA
**
33572173 AAA-GTTA
1 AAACCCTA
33572180 AAACCCTA
1 AAACCCTA
*
33572188 AAACCAT-
1 AAACCCTA
33572195 AAACCCTA
1 AAACCCTA
*
33572203 AAACCCCA
1 AAACCCTA
33572211 AAAC
1 AAAC
33572215 ATGCAAAATG
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
6 3 0.07
7 17 0.38
8 25 0.56
ACGTcount: A:0.52, C:0.33, G:0.02, T:0.14
Consensus pattern (8 bp):
AAACCCTA
Found at i:33572207 original size:15 final size:15
Alignment explanation
Indices: 33572145--33572207 Score: 76
Period size: 15 Copynumber: 4.3 Consensus size: 15
33572135 TTTAATTTTT
33572145 AACCATAAACCCT-A
1 AACCATAAACCCTAA
*
33572159 AACCTTAAACCCTAA
1 AACCATAAACCCTAA
**
33572174 AA-GTTAAAACCCTAA
1 AACCAT-AAACCCTAA
33572189 AACCATAAACCCTAA
1 AACCATAAACCCTAA
33572204 AACC
1 AACC
33572208 CCAAAACATG
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
14 14 0.33
15 27 0.64
16 1 0.02
ACGTcount: A:0.51, C:0.32, G:0.02, T:0.16
Consensus pattern (15 bp):
AACCATAAACCCTAA
Found at i:33574680 original size:24 final size:26
Alignment explanation
Indices: 33574653--33574706 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 26
33574643 ATATGTAAGT
* *
33574653 ATAATGATAATAAC-ATA-TAATATA
1 ATAATAATAATAACAATATTAATAAA
33574677 ATAATAATAATAACAATATTAATAAA
1 ATAATAATAATAACAATATTAATAAA
33574703 ATAA
1 ATAA
33574707 ATTTAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 13 0.50
25 3 0.12
26 10 0.38
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (26 bp):
ATAATAATAATAACAATATTAATAAA
Found at i:33576347 original size:413 final size:413
Alignment explanation
Indices: 33575580--33576406 Score: 1573
Period size: 413 Copynumber: 2.0 Consensus size: 413
33575570 TTAAAAATAG
33575580 CCAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGCCTCATTCCTTCCTA
1 CCAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGCCTCATTCCTTCCTA
33575645 CTGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCAT
66 CTGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCAT
33575710 TGCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAA
131 TGCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAA
* * ** *
33575775 GAGAAAGTCCTAATTTAGACTCTTCCTTTTCAGATTTCCAACCTTTAAATGTGGTGTGTTCTAAA
196 GAGAAAGTCCTAATTTAGACTATTCCTTTTCAGACTTCCAACCTTTAAACATGGTGCGTTCTAAA
*
33575840 CAATAGTCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCT
261 CAATAATCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCT
33575905 TTTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAAC
326 TTTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAAC
33575970 AATGGATGAGAATACAATTGGTT
391 AATGGATGAGAATACAATTGGTT
33575993 CCAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGCCTCATTCCTTCCTA
1 CCAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGCCTCATTCCTTCCTA
33576058 CTGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCAT
66 CTGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCAT
33576123 TGCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAA
131 TGCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAA
*
33576188 GAGAATGTCCTAATTTAGACTATTCCTTTTCAGACTTCCAACCTTTAAACATGGTGCGTTCTAAA
196 GAGAAAGTCCTAATTTAGACTATTCCTTTTCAGACTTCCAACCTTTAAACATGGTGCGTTCTAAA
* *
33576253 CAATAATCTTGTTTCAGGTTCCTGTGTTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCT
261 CAATAATCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCT
33576318 TTTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAAC
326 TTTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAAC
33576383 AATGGATGAGAATACAATTGGTT
391 AATGGATGAGAATACAATTGGTT
33576406 C
1 C
33576407 TGAACATAGC
Statistics
Matches: 405, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
413 405 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.37
Consensus pattern (413 bp):
CCAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGCCTCATTCCTTCCTA
CTGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCAT
TGCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAA
GAGAAAGTCCTAATTTAGACTATTCCTTTTCAGACTTCCAACCTTTAAACATGGTGCGTTCTAAA
CAATAATCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCT
TTTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAAC
AATGGATGAGAATACAATTGGTT
Found at i:33577850 original size:25 final size:26
Alignment explanation
Indices: 33577799--33577859 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
33577789 AAGAAAATCC
* **
33577799 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
*
33577825 AAAAGAATGAAAAAAT-ATTGGCTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
33577850 AAAATGAATG
1 AAAA-GAATG
33577860 CAAAGATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGCTCA
Found at i:33578072 original size:3 final size:3
Alignment explanation
Indices: 33578064--33578156 Score: 63
Period size: 3 Copynumber: 31.3 Consensus size: 3
33578054 ATATGTAGGT
*
33578064 ATA ATA ATA ATA ATA ATA TATG AT- ATA ATAA ATA A-A A-A ACTA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA AT-A ATA ATA ATA A-TA ATA
* * *
33578109 ATA AT- ATA GTA ATA ATA ATA CTA ATA A-A CAGTA TTA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA
33578153 ATA A
1 ATA A
33578157 AAAGAACACC
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
2 11 0.15
3 54 0.74
4 7 0.10
5 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:33579476 original size:73 final size:73
Alignment explanation
Indices: 33579357--33579504 Score: 287
Period size: 73 Copynumber: 2.0 Consensus size: 73
33579347 TAAAAATAGC
33579357 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGCCTCATTCCTTCCTAC
1 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGCCTCATTCCTTCCTAC
33579422 TGCATCTT
66 TGCATCTT
*
33579430 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGTCTCATTCCTTCCTAC
1 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGCCTCATTCCTTCCTAC
33579495 TGCATCTT
66 TGCATCTT
33579503 CA
1 CA
33579505 GAGTATAGGA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.16, C:0.30, G:0.16, T:0.39
Consensus pattern (73 bp):
CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGCCTCATTCCTTCCTAC
TGCATCTT
Found at i:33580196 original size:413 final size:413
Alignment explanation
Indices: 33579430--33580667 Score: 2469
Period size: 413 Copynumber: 3.0 Consensus size: 413
33579420 ACTGCATCTT
33579430 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGTCTCATTCCTTCCTAC
1 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGTCTCATTCCTTCCTAC
33579495 TGCATCTTCAGA-GTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCATT
66 TGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCATT
33579559 GCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAAG
131 GCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAAG
33579624 AGAAAGTCCTAATTTAGACTCTTCCTTTTCAGATTTCCAACCTTTAAATGTGGTGTGTTCTAAAC
196 AGAAAGTCCTAATTTAGACTCTTCCTTTTCAGATTTCCAACCTTTAAATGTGGTGTGTTCTAAAC
33579689 AATAGTCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCTT
261 AATAGTCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCTT
33579754 TTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAACA
326 TTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAACA
33579819 ATGGATGAGAATACAATTGGTTC
391 ATGGATGAGAATACAATTGGTTC
33579842 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGTCTCATTCCTTCCTAC
1 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGTCTCATTCCTTCCTAC
33579907 TGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCATT
66 TGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCATT
33579972 GCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAAG
131 GCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAAG
33580037 AGAAAGTCCTAATTTAGACTCTTCCTTTTCAGATTTCCAACCTTTAAATGTGGTGTGTTCTAAAC
196 AGAAAGTCCTAATTTAGACTCTTCCTTTTCAGATTTCCAACCTTTAAATGTGGTGTGTTCTAAAC
33580102 AATAGTCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCTT
261 AATAGTCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCTT
33580167 TTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAACA
326 TTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAACA
33580232 ATGGATGAGAATACAATTGGTTC
391 ATGGATGAGAATACAATTGGTTC
33580255 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGTCTCATTCCTTCCTAC
1 CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGTCTCATTCCTTCCTAC
33580320 TGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCATT
66 TGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCATT
33580385 GCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAAG
131 GCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAAG
33580450 AGAAAGTCCTAATTTAGACTCTTCCTTTTCAGATTTCCAACCTTTAAATGTGGTGTGTTCTAAAC
196 AGAAAGTCCTAATTTAGACTCTTCCTTTTCAGATTTCCAACCTTTAAATGTGGTGTGTTCTAAAC
33580515 AATAGTCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCTT
261 AATAGTCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCTT
33580580 TTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAACA
326 TTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAACA
33580645 ATGGATGAGAATACAATTGGTTC
391 ATGGATGAGAATACAATTGGTTC
33580668 TGANNNNNNN
Statistics
Matches: 825, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
412 77 0.09
413 748 0.91
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (413 bp):
CAATTTTGCCCGGTCGTGCTGGACCTTGGTACTATTCTTCTTCAAGTAGTCTCATTCCTTCCTAC
TGCATCTTCAGAGGTATAGGAACTAGTGCTTCAATCTACTCCACTGCAATGTCAGGGTGATCATT
GCTTAGTTTTTTATTTAAGCTTTGTCATTTTGTTCAATCAATGTTTTTAACAACAAAATCTAAAG
AGAAAGTCCTAATTTAGACTCTTCCTTTTCAGATTTCCAACCTTTAAATGTGGTGTGTTCTAAAC
AATAGTCGTGTTTCAGGTTCCTGTATTATTTAGAAACTTCTAGAGTAATATGCCAAACTTCCCTT
TTGAAAGTTTTATTAGTCCATTAATCATTATTCCAATGCAACACGCTTGCAAAAAGGGTATAACA
ATGGATGAGAATACAATTGGTTC
Found at i:33580927 original size:25 final size:26
Alignment explanation
Indices: 33580876--33580936 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
33580866 AAGAAAATCC
* **
33580876 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
*
33580902 AAAAGAATGAAAAAAT-ATTGGCTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
33580927 AAAATGAATG
1 AAAA-GAATG
33580937 CAAAGATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGCTCA
Found at i:33581149 original size:3 final size:3
Alignment explanation
Indices: 33581141--33581234 Score: 77
Period size: 3 Copynumber: 31.3 Consensus size: 3
33581131 ATATGTAGGT
* * *
33581141 ATA ATA ATA ATA ATA ATA TATG AT- ATA ATAA ATA AAA AAA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA
* * * *
33581187 ATA AT- ATA GTA ATA ATA ATA CTA ATAA ACA ATA TTA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
33581231 ATA A
1 ATA A
33581235 AAAGAAAACC
Statistics
Matches: 74, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
2 6 0.08
3 61 0.82
4 7 0.09
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:33582346 original size:14 final size:15
Alignment explanation
Indices: 33582311--33582347 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
33582301 ATGGACTGAA
33582311 TTTTATTTTATTTGG
1 TTTTATTTTATTTGG
33582326 TTTTATTTT-TTT-G
1 TTTTATTTTATTTGG
33582339 TTTATATTT
1 TTT-TATTT
33582348 GCATGGGCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.19
14 8 0.38
15 9 0.43
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (15 bp):
TTTTATTTTATTTGG
Found at i:33584327 original size:2 final size:2
Alignment explanation
Indices: 33584288--33584317 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
33584278 TTCTAAACTT
33584288 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33584318 ACAGATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:33586025 original size:16 final size:17
Alignment explanation
Indices: 33586004--33586036 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
33585994 AAGGTTTTGG
33586004 ATTAAT-TAAATTAAAA
1 ATTAATATAAATTAAAA
33586020 ATTAATATAAATTAAAA
1 ATTAATATAAATTAAAA
33586037 TATTTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTAATATAAATTAAAA
Found at i:33587533 original size:23 final size:22
Alignment explanation
Indices: 33587491--33587555 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
33587481 AGATTGTGGC
*
33587491 TTTTTTTTAT-TATAGA-TTAGT
1 TTTTTTTTATGAAT-GATTTAGT
*
33587512 ATTTTTTTTATGCATGATTTAGT
1 -TTTTTTTTATGAATGATTTAGT
33587535 TTTTTATTTATTGAATGATTT
1 TTTTT-TTTA-TGAATGATTT
33587556 TGGTATTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
22 17 0.46
23 11 0.30
24 9 0.24
ACGTcount: A:0.23, C:0.02, G:0.11, T:0.65
Consensus pattern (22 bp):
TTTTTTTTATGAATGATTTAGT
Done.