Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold323
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 764456
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.32
Warning! 36661 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:4547 original size:24 final size:24
Alignment explanation
Indices: 4494--4547 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
4484 TTCGTAGGCC
* * * *
4494 AAATAAATTATGCTAATAAATGCT
1 AAATATATTATACCAATAAATACT
4518 AAATATATTATACCAATAAATACT
1 AAATATATTATACCAATAAATACT
4542 AAATAT
1 AAATAT
4548 TCTAAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATATATTATACCAATAAATACT
Found at i:5703 original size:15 final size:15
Alignment explanation
Indices: 5669--5703 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
5659 GCCCATTAAA
*
5669 CAAATAAATAAAGCC
1 CAAATAAATAAAACC
*
5684 TAAATAAATAAAACC
1 CAAATAAATAAAACC
5699 CAAAT
1 CAAAT
5704 CCAATAAACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.63, C:0.17, G:0.03, T:0.17
Consensus pattern (15 bp):
CAAATAAATAAAACC
Found at i:6903 original size:4 final size:4
Alignment explanation
Indices: 6896--6957 Score: 83
Period size: 4 Copynumber: 16.0 Consensus size: 4
6886 ATATGTTTGT
* * *
6896 TTTA TTTA TTTA TTTA CTTA TTTA TTTA TTTA TTTA TTCA TTCA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
6944 TTTA -TTA TTT- TTTA
1 TTTA TTTA TTTA TTTA
6958 AAATATTCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
3 6 0.12
4 46 0.88
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:14043 original size:2 final size:2
Alignment explanation
Indices: 14036--14060 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14026 CTCCAACTTC
14036 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14061 AAAGCTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:19285 original size:3 final size:3
Alignment explanation
Indices: 19277--19327 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
19267 ATTTCATATC
19277 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
19325 ATT
1 ATT
19328 GCTTTTATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:19641 original size:43 final size:41
Alignment explanation
Indices: 19587--19671 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 41
19577 ATTTTGTTCG
*
19587 TTTTTGTTCATATTATCTATGTTCACATTATCATTATTTGTTT
1 TTTTTGCTCATATTATCTATGTTCACATTATCATT-TTT-TTT
* *
19630 TTTTTGCTCATATTATTTTTGTTCACATTATCATTTTTTTT
1 TTTTTGCTCATATTATCTATGTTCACATTATCATTTTTTTT
19671 T
1 T
19672 CATTATGCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
41 4 0.10
42 3 0.08
43 32 0.82
ACGTcount: A:0.19, C:0.12, G:0.06, T:0.64
Consensus pattern (41 bp):
TTTTTGCTCATATTATCTATGTTCACATTATCATTTTTTTT
Found at i:19992 original size:112 final size:112
Alignment explanation
Indices: 19705--20148 Score: 524
Period size: 112 Copynumber: 4.0 Consensus size: 112
19695 TTCAAAAAAG
* * * * * *
19705 AAAAT-TTTTCTAAATGAGGCAATATTTAGCATTT-AGAAATTCGAGAAAACGTGTCCTAAGGTG
1 AAAATATTTTCAAAATAAGGCAATATTTTGCGTTTGAGAAATTCGAGAAAACATGCCCTAAGGTG
* * *
19768 CTGTGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
66 CTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
* * *
19815 AAAAAATTTT-AAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTG
1 AAAATATTTTCAAAATAAGGCAATATTTTGCGTTTGAGAAATTCGAGAAAACATGCCCTAAGGTG
* * *
19879 CTGGGTGTCGATTTTTCTCATTAAACCAAATGGTTAAATATTCTTTT
66 CTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
* *
19926 AAAATATTTTCAAAATAAGGCAATGTTTTGTGTTTGAGAAATTCGAGAAAACATGCCCTAAGGTG
1 AAAATATTTTCAAAATAAGGCAATATTTTGCGTTTGAGAAATTCGAGAAAACATGCCCTAAGGTG
*
19991 CTGGGTGTCGATTTTTCTCATTCAACCAAATGACTAAATATCCTTTT
66 CTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
* * ** ** * * * *
20038 AAAA-A-TTTCGAAGTAAGATAATATTTTGCGTTTG-GAAATTTAAGGAAACGTGCCCTAATGCG
1 AAAATATTTTCAAAATAAGGCAATATTTTGCGTTTGAGAAATTCGAGAAAACATGCCCTAAGGTG
* ** * * * *
20100 CTGGGTTTCGATTTTTC-CATTTGACCAAATAGCCAAATATTCTCTT
66 CTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
20146 AAA
1 AAA
20149 TCTTAAAACC
Statistics
Matches: 289, Mismatches: 42, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
108 25 0.09
109 38 0.13
110 46 0.16
111 81 0.28
112 99 0.34
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (112 bp):
AAAATATTTTCAAAATAAGGCAATATTTTGCGTTTGAGAAATTCGAGAAAACATGCCCTAAGGTG
CTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
Found at i:24291 original size:17 final size:17
Alignment explanation
Indices: 24271--24312 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
24261 AAAAATTTTC
* *
24271 AAATTTTAAAATAATTT
1 AAATTTCAAAATAACTT
24288 AAA-TTCAAAATAACTT
1 AAATTTCAAAATAACTT
24304 AAATTTCAA
1 AAATTTCAA
24313 CCAATTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATTTCAAAATAACTT
Found at i:30489 original size:3 final size:3
Alignment explanation
Indices: 30481--30509 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
30471 TTTGAGACAC
30481 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
30510 AACATGGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:30614 original size:2 final size:2
Alignment explanation
Indices: 30609--30639 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
30599 TCTCTTTTTT
30609 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
30640 CCTTTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:43899 original size:18 final size:19
Alignment explanation
Indices: 43866--43909 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
43856 ACAGCACCTA
*
43866 AACAGTAATCAGTAACGGT
1 AACAGTAATCAGTAACAGT
*
43885 AGCAGTAAT-AGTAACAGT
1 AACAGTAATCAGTAACAGT
43903 AACAGTA
1 AACAGTA
43910 TTCAACACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (19 bp):
AACAGTAATCAGTAACAGT
Found at i:43903 original size:6 final size:6
Alignment explanation
Indices: 43866--43909 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
43856 ACAGCACCTA
* * *
43866 AACAGT AATCAGT AACGGT AGCAGT AATAGT AACAGT AACAGT A
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACAGT A
43910 TTCAACACAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (6 bp):
AACAGT
Found at i:43944 original size:39 final size:39
Alignment explanation
Indices: 43895--43987 Score: 132
Period size: 39 Copynumber: 2.4 Consensus size: 39
43885 AGCAGTAATA
* * **
43895 GTAACAGTAACAGTATTCAACACATAAAGTGCTGAATTT
1 GTAACAGTAACAGTATTCAACACACAAAGTACTGAATCG
* *
43934 GTAGCAGTAACAGTATTCAACACACAAAGTATTGAATCG
1 GTAACAGTAACAGTATTCAACACACAAAGTACTGAATCG
43973 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
43988 GTCGGCATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (39 bp):
GTAACAGTAACAGTATTCAACACACAAAGTACTGAATCG
Found at i:44233 original size:40 final size:40
Alignment explanation
Indices: 44187--44273 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
44177 AATTCATTAC
* *
44187 TTCAGTAA-TCTCACAGTTCAATGCAGTACACATAACAATA
1 TTCAGTAACT-TCACAATTCAATGCAGTACACAAAACAATA
** *
44227 TTCAGTAACTTCACAATTCAATTTAGTACTCAAAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAACAATA
44267 TTCAGTA
1 TTCAGTA
44274 TTCCATAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 40 0.98
41 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (40 bp):
TTCAGTAACTTCACAATTCAATGCAGTACACAAAACAATA
Found at i:46937 original size:27 final size:27
Alignment explanation
Indices: 46893--46945 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
46883 GACAACCAAA
*
46893 TTTTCCTTTTTCTTTTTCTTTCTTTCT
1 TTTTCCTTTTTCTCTTTCTTTCTTTCT
*
46920 TTTTCCTTCTTTC-CTTTCTTTGTTTC
1 TTTTCCTT-TTTCTCTTTCTTTCTTTC
46946 GTTCTACTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.00, C:0.25, G:0.02, T:0.74
Consensus pattern (27 bp):
TTTTCCTTTTTCTCTTTCTTTCTTTCT
Found at i:48125 original size:14 final size:14
Alignment explanation
Indices: 48083--48117 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
48073 GCCTCTGTTC
48083 TTTCTTTCTTTT-T
1 TTTCTTTCTTTTGT
48096 GTTTCTTTCTTTTGT
1 -TTTCTTTCTTTTGT
48111 TTTCTTT
1 TTTCTTT
48118 TATTTGTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 19 0.95
15 1 0.05
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (14 bp):
TTTCTTTCTTTTGT
Found at i:48289 original size:14 final size:17
Alignment explanation
Indices: 48270--48307 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
48260 ATTTATTTCT
48270 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
48284 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
48301 TAATATA
1 TAATATA
48308 CTTTATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 1 0.05
16 4 0.19
17 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:54254 original size:45 final size:45
Alignment explanation
Indices: 54200--54286 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
54190 CAGTAATAGT
* * *
54200 AACAGTATTCAACACACAAAGTTTTGAATCTGTAACAGTAACGGC
1 AACAGTATTCAACACACAAAGTATCGAATCAGTAACAGTAACGGC
54245 AACAGTATTCAACACACAAAGTATCGAATCAGTAACAGTAAC
1 AACAGTATTCAACACACAAAGTATCGAATCAGTAACAGTAAC
54287 AATAGTCGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.22
Consensus pattern (45 bp):
AACAGTATTCAACACACAAAGTATCGAATCAGTAACAGTAACGGC
Found at i:54535 original size:40 final size:40
Alignment explanation
Indices: 54490--54576 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
54480 AATTCATAAC
* *
54490 TTCAGTAA-TCTCACAGTTCAATACAGTACACATAACAATA
1 TTCAGTAACT-TCACAATTCAATACAGTACACAAAACAATA
* *
54530 TTCAGTAACTTCACAATTCAATTCAGTACTCAAAACAATA
1 TTCAGTAACTTCACAATTCAATACAGTACACAAAACAATA
*
54570 TTTAGTA
1 TTCAGTA
54577 TTCCATAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 40 0.98
41 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (40 bp):
TTCAGTAACTTCACAATTCAATACAGTACACAAAACAATA
Found at i:55350 original size:17 final size:17
Alignment explanation
Indices: 55328--55362 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
55318 GAATGGTCTC
* *
55328 TGTTTCTTTTCTTCTTT
1 TGTTTCATTTATTCTTT
55345 TGTTTCATTTATTCTTT
1 TGTTTCATTTATTCTTT
55362 T
1 T
55363 ATTTTATTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.74
Consensus pattern (17 bp):
TGTTTCATTTATTCTTT
Found at i:60942 original size:18 final size:18
Alignment explanation
Indices: 60921--60975 Score: 92
Period size: 18 Copynumber: 3.1 Consensus size: 18
60911 CTGTTTTTGT
*
60921 TATGATTTTCTGTTGAGA
1 TATGATTTTCTATTGAGA
*
60939 TATGATTTCCTATTGAGA
1 TATGATTTTCTATTGAGA
60957 TATGATTTTCTATTGAGA
1 TATGATTTTCTATTGAGA
60975 T
1 T
60976 TTGTTGCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.25, C:0.07, G:0.18, T:0.49
Consensus pattern (18 bp):
TATGATTTTCTATTGAGA
Found at i:66353 original size:18 final size:18
Alignment explanation
Indices: 66332--66386 Score: 92
Period size: 18 Copynumber: 3.1 Consensus size: 18
66322 CTGTTTTTGT
*
66332 TATGATTTTCTGTTGAGA
1 TATGATTTTCTATTGAGA
*
66350 TATGATTTCCTATTGAGA
1 TATGATTTTCTATTGAGA
66368 TATGATTTTCTATTGAGA
1 TATGATTTTCTATTGAGA
66386 T
1 T
66387 TTGTTGCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.25, C:0.07, G:0.18, T:0.49
Consensus pattern (18 bp):
TATGATTTTCTATTGAGA
Found at i:66754 original size:18 final size:19
Alignment explanation
Indices: 66707--66754 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 19
66697 GCTATAAATA
*
66707 TTATTATATTTTATATTTT
1 TTATAATATTTTATATTTT
*
66726 ATATAA-A-TTTAT-TTTT
1 TTATAATATTTTATATTTT
66742 TTATAATATTTTA
1 TTATAATATTTTA
66755 ATTAATCTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
16 9 0.38
17 6 0.25
18 5 0.21
19 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATAATATTTTATATTTT
Found at i:73870 original size:32 final size:32
Alignment explanation
Indices: 73829--73889 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
73819 GGCCCATTTT
73829 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAAG
*
73861 TATTTTAAAAATATTTTAAAATTAAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAAA
73890 TTAAAAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
32 24 0.89
33 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (32 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAAG
Found at i:73891 original size:40 final size:40
Alignment explanation
Indices: 73842--73932 Score: 141
Period size: 38 Copynumber: 2.3 Consensus size: 40
73832 TTTAAAAATT
* *
73842 TTAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAA
1 TTAAAAAATTAAAAAAAAGTATGTAAAAAATATTTTAAAA
73882 TTAAAAAATT--AAAAAAGTATGTAAAAAATATTTTAAAA
1 TTAAAAAATTAAAAAAAAGTATGTAAAAAATATTTTAAAA
*
73920 TTAAAAAAATAAA
1 TTAAAAAATTAAA
73933 TATATTTATT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
38 35 0.76
40 11 0.24
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (40 bp):
TTAAAAAATTAAAAAAAAGTATGTAAAAAATATTTTAAAA
Found at i:74152 original size:11 final size:11
Alignment explanation
Indices: 74133--74170 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
74123 AAAAATTAAA
74133 AAAAGTATTTTT
1 AAAA-TATTTTT
74145 AAAATATTTTT
1 AAAATATTTTT
74156 AAAATA-TTTT
1 AAAATATTTTT
74166 AAAAT
1 AAAAT
74171 TAAAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 9 0.35
11 13 0.50
12 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (11 bp):
AAAATATTTTT
Found at i:74170 original size:10 final size:10
Alignment explanation
Indices: 74107--74170 Score: 58
Period size: 11 Copynumber: 6.1 Consensus size: 10
74097 NNNNCATTTT
74107 TATTTTAAAA
1 TATTTTAAAA
74117 -ATTTTAAAA
1 TATTTTAAAA
* **
74126 AATTAAAAAAA
1 TATT-TTAAAA
74137 GTATTTTTAAAA
1 -TA-TTTTAAAA
74149 TATTTTTAAAA
1 TA-TTTTAAAA
74160 TATTTTAAAA
1 TATTTTAAAA
74170 T
1 T
74171 TAAAAAAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
9 9 0.20
10 12 0.27
11 17 0.38
12 5 0.11
13 2 0.04
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (10 bp):
TATTTTAAAA
Found at i:74170 original size:42 final size:41
Alignment explanation
Indices: 74107--74260 Score: 179
Period size: 42 Copynumber: 3.7 Consensus size: 41
74097 NNNNCATTTT
* **
74107 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAGTATTTTTAAAA-
1 TATTTTAAAAATATTT-TAAAATTAAAAAAA--ATTTAAAAAAG
* *
74149 TATTTTTAAAATATTTTAAAATTAAAAAAAATTAAAAAAAAG
1 TATTTTAAAAATATTTTAAAATTAAAAAAAATT-TAAAAAAG
*
74191 TATTTTAAAAATATTTTAAAATTTAAAAAAA-TTAAAAAAG
1 TATTTTAAAAATATTTTAAAATTAAAAAAAATTTAAAAAAG
* *
74231 TATGTAAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTTAAAATTAAAAAAA
74261 TAAATATATT
Statistics
Matches: 98, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
40 37 0.38
41 5 0.05
42 53 0.54
43 3 0.03
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (41 bp):
TATTTTAAAAATATTTTAAAATTAAAAAAAATTTAAAAAAG
Found at i:74178 original size:52 final size:52
Alignment explanation
Indices: 74107--74229 Score: 160
Period size: 52 Copynumber: 2.3 Consensus size: 52
74097 NNNNCATTTT
** *
74107 TATTTTAAAAATTTTAAAAAATT-AAAAAAAGTATTTTTAAAATATTTTTAAAA
1 TATTTT-AAAATTAAAAAAAATTAAAAAAAAGTATTTTAAAAATA-TTTTAAAA
74160 TATTTTAAAATTAAAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAA
**
74212 T-TTAAAAAAATTAAAAAA
1 TATT-TTAAAATTAAAAAA
74230 GTATGTAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
51 2 0.03
52 35 0.56
53 26 0.41
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (52 bp):
TATTTTAAAATTAAAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAA
Found at i:75114 original size:2 final size:2
Alignment explanation
Indices: 75107--75150 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
75097 ATTAAATTTA
* * *
75107 AT AT AT AT AT AT AT AT AT AA AA AT TT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75148 AT A
1 AT A
75151 ACCATGGTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:79233 original size:10 final size:10
Alignment explanation
Indices: 79193--79233 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
79183 ATTTTGCTTT
*
79193 CATAAATATA
1 CATATATATA
*
79203 AATATATATA
1 CATATATATA
*
79213 TATATATATA
1 CATATATATA
79223 CATATATATA
1 CATATATATA
79233 C
1 C
79234 TCTTATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (10 bp):
CATATATATA
Found at i:79243 original size:2 final size:2
Alignment explanation
Indices: 79198--79232 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
79188 GCTTTCATAA
* *
79198 AT AT AA AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79233 CTCTTATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:81175 original size:26 final size:25
Alignment explanation
Indices: 81100--81176 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
81090 ACCGCATCTC
*
81100 TTATGAGCGTCCCGATATATGGCTCT
1 TTATGAGCTTCCCGATAT-TGGCTCT
* *
81126 TCA-GAGCTTCTCGAT-TTAAAGGCTCTT
1 TTATGAGCTTCCCGATATT---GGCTC-T
81153 TTATGAGCTTCCCGATATTGGCTC
1 TTATGAGCTTCCCGATATTGGCTC
81177 GCATAATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
23 1 0.03
24 1 0.03
25 10 0.25
26 12 0.30
27 3 0.08
28 11 0.28
29 2 0.05
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (25 bp):
TTATGAGCTTCCCGATATTGGCTCT
Found at i:81260 original size:25 final size:25
Alignment explanation
Indices: 81155--81267 Score: 79
Period size: 26 Copynumber: 4.5 Consensus size: 25
81145 AGGCTCTTTT
* *
81155 ATGAGCTTCCCGATAT-TGGCTCGC
1 ATGAGCTTCCCGTTATATGGCTCGA
* ** *
81179 ATAATTTTCCCGTTTTAATGGCTC-A
1 ATGAGCTTCCCGTTAT-ATGGCTCGA
*
81204 CATGAGCTTCTCGTTATATGGCTCGA
1 -ATGAGCTTCCCGTTATATGGCTCGA
* * *
81230 AAGAGCTTCCCGTTTATAT-GCTTGT
1 ATGAGCTTCCCG-TTATATGGCTCGA
81255 ATGAGCATTCCCG
1 ATGAGC-TTCCCG
81268 AATATGAATT
Statistics
Matches: 67, Mismatches: 16, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
24 11 0.16
25 26 0.39
26 30 0.45
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATGGCTCGA
Found at i:84292 original size:24 final size:25
Alignment explanation
Indices: 84250--84299 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
84240 GTTTGAGATT
84250 ATTCTAAAAAAATATTATATTATAA
1 ATTCTAAAAAAATATTATATTATAA
*
84275 ATTCTAAAAAAATA-TATATTGTAA
1 ATTCTAAAAAAATATTATATTATAA
84299 A
1 A
84300 AATAATTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTCTAAAAAAATATTATATTATAA
Found at i:88741 original size:13 final size:13
Alignment explanation
Indices: 88723--88747 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88713 GTGAATATTT
88723 CTGTGATTTTGAC
1 CTGTGATTTTGAC
88736 CTGTGATTTTGA
1 CTGTGATTTTGA
88748 GTATATTCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.24, T:0.48
Consensus pattern (13 bp):
CTGTGATTTTGAC
Found at i:128774 original size:147 final size:147
Alignment explanation
Indices: 128480--128764 Score: 326
Period size: 147 Copynumber: 1.9 Consensus size: 147
128470 AATTTGTACA
* **
128480 TATTATAATTTACCATAAAGTCAGTTACACATTTAAGGTTTAAGGTTATGTATCATTAATATAAA
1 TATTATAATTTACCATAAAGTCAGTTACACATTTAAGGTTTAAGCTTACATATCATTAATAT-AA
* ** * *
128545 AAAATGTACATTATAATGTCATAATTGTAGATAAGGTGACATATAATTAATAATCTATCTTAACT
65 AAAATATACATTATAATAACATAATTGTA-ATAAGGTGACATATAATTAATAATCTACCTAAACT
128610 ATATAATGGTAACTGTATG
129 ATATAATGGTAACTGTATG
* * ** *
128629 TATTATAATTTGA-CATAAAGTTAGTTGCATGTTTAGGGTTTAAGCTTACATATCATTAATAT-A
1 TATTATAATTT-ACCATAAAGTCAGTTACACATTTAAGGTTTAAGCTTACATATCATTAATATAA
* * * *
128692 AAAATATACATTATAATAACATAGTTGT-AT-AGAGTGATACATATCATTTATTATCTACCTAAA
65 AAAATATACATTATAATAACATAATTGTAATAAG-GTG--ACATATAATTAATAATCTACCTAAA
*
128755 TTATATAATG
127 CTATATAATG
128765 TCAATTGTAT
Statistics
Matches: 114, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
144 2 0.02
145 5 0.04
147 54 0.47
149 52 0.46
150 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.39
Consensus pattern (147 bp):
TATTATAATTTACCATAAAGTCAGTTACACATTTAAGGTTTAAGCTTACATATCATTAATATAAA
AAATATACATTATAATAACATAATTGTAATAAGGTGACATATAATTAATAATCTACCTAAACTAT
ATAATGGTAACTGTATG
Found at i:134103 original size:15 final size:15
Alignment explanation
Indices: 134083--134111 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
134073 AATTATTGTT
134083 TAAATAAATTTTTAA
1 TAAATAAATTTTTAA
134098 TAAATAAATTTTTA
1 TAAATAAATTTTTA
134112 CATATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TAAATAAATTTTTAA
Found at i:139301 original size:3 final size:3
Alignment explanation
Indices: 139293--139332 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
139283 GCTCAGTTAA
139293 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
139333 TATAACCACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:148994 original size:40 final size:40
Alignment explanation
Indices: 148950--149036 Score: 124
Period size: 39 Copynumber: 2.2 Consensus size: 40
148940 ACGTAACCCT
* *
148950 GATTTGCTT-CCACGTCAGCAAATCGCGCTTACGTGGACGC
1 GATTTGCTTGCCACGTAAG-AAATCGCGCTGACGTGGACGC
*
148990 GATTTG-TTGCCACGTAAGTAATCGCGCTGACGTGGACGC
1 GATTTGCTTGCCACGTAAGAAATCGCGCTGACGTGGACGC
149029 GATTTGCT
1 GATTTGCT
149037 GACACGTCCC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
39 27 0.64
40 15 0.36
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.28
Consensus pattern (40 bp):
GATTTGCTTGCCACGTAAGAAATCGCGCTGACGTGGACGC
Found at i:160640 original size:15 final size:16
Alignment explanation
Indices: 160622--160654 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
160612 CTAAATTTCA
160622 ATTTTTTA-AAATAAT
1 ATTTTTTAGAAATAAT
*
160637 ATTTTTTAGAATTAAT
1 ATTTTTTAGAAATAAT
160653 AT
1 AT
160655 CTACTCATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
ATTTTTTAGAAATAAT
Found at i:164040 original size:32 final size:32
Alignment explanation
Indices: 163981--164041 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
163971 TGTATAATTA
163981 TATTAAATTATTTAAATATTATCTAAAATATT
1 TATTAAATTATTTAAATATTATCTAAAATATT
*
164013 TATTTAATT-TTT-AATATTAAGTCTAAAAT
1 TATTAAATTATTTAAATATT-A-TCTAAAAT
164042 GAACATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.23
31 4 0.15
32 16 0.62
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (32 bp):
TATTAAATTATTTAAATATTATCTAAAATATT
Found at i:164762 original size:14 final size:15
Alignment explanation
Indices: 164743--164775 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
164733 ACTAACATAT
*
164743 TTTGA-CCTTTTTAA
1 TTTGACCCTATTTAA
164757 TTTGACCCTATTTAA
1 TTTGACCCTATTTAA
164772 TTTG
1 TTTG
164776 TGAATTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.21, C:0.15, G:0.09, T:0.55
Consensus pattern (15 bp):
TTTGACCCTATTTAA
Found at i:165246 original size:16 final size:18
Alignment explanation
Indices: 165201--165241 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
165191 AAGCTGTTTA
165201 TATATATATTAATAAATT
1 TATATATATTAATAAATT
*
165219 TATATATATTAATAATTT
1 TATATATATTAATAAATT
165237 TATAT
1 TATAT
165242 TTTAAGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TATATATATTAATAAATT
Found at i:166517 original size:32 final size:32
Alignment explanation
Indices: 166471--166531 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
166461 TGTCAGTCAT
166471 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
*
166503 TTCAATATCTAACAAGCTTAAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
166532 CAATATCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:166538 original size:27 final size:30
Alignment explanation
Indices: 166471--166544 Score: 100
Period size: 32 Copynumber: 2.5 Consensus size: 30
166461 TGTCAGTCAT
*
166471 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
166503 TTCAATATCTAACAAGCTTAAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
166531 -TCAATATCTAACAA
1 TTCAATATCTAACAA
166545 ATTCAAGACA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 14 0.34
28 2 0.05
29 2 0.05
32 23 0.56
ACGTcount: A:0.51, C:0.19, G:0.03, T:0.27
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:166555 original size:27 final size:27
Alignment explanation
Indices: 166472--166558 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 27
166462 GTCAGTCATT
* *
166472 TCAATATCCAACAAGCTTAAAACATAATAAA
1 TCAATATCTAACAAGATTAAAAC---AT-AA
*
166503 TTCAATATCTAACAAGCTTAAAACATAA
1 -TCAATATCTAACAAGATTAAAACATAA
*
166531 TCAATATCTAACAA-ATTCAAGACATAA
1 TCAATATCTAACAAGATT-AAAACATAA
166558 T
1 T
166559 AATTTCAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.04
27 23 0.45
28 2 0.04
29 2 0.04
32 22 0.43
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCTAACAAGATTAAAACATAA
Found at i:169760 original size:15 final size:15
Alignment explanation
Indices: 169742--169774 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
169732 TAACGTTAAC
169742 AATAATAATAATGAT
1 AATAATAATAATGAT
169757 AATAATAATAATGAT
1 AATAATAATAATGAT
169772 AAT
1 AAT
169775 GATACAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (15 bp):
AATAATAATAATGAT
Found at i:172318 original size:17 final size:17
Alignment explanation
Indices: 172296--172348 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
172286 TCTTCAACAG
172296 ACAGATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
*
172313 ACAGAT--TAAA--CAA
1 ACAGATGCAAAATCCAA
*
172326 ACATATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
172343 ACAGAT
1 ACAGAT
172349 TCTTCAACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 8 0.29
15 6 0.21
17 14 0.50
ACGTcount: A:0.55, C:0.21, G:0.09, T:0.15
Consensus pattern (17 bp):
ACAGATGCAAAATCCAA
Found at i:172334 original size:30 final size:30
Alignment explanation
Indices: 172291--172349 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
172281 AAGATTCTTC
*
172291 AACAGACAGATGCAAAATCCAAACAGATTA
1 AACAAACAGATGCAAAATCCAAACAGATTA
*
172321 AACAAACATATGCAAAATCCAAACAGATT
1 AACAAACAGATGCAAAATCCAAACAGATT
172350 CTTCAACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.54, C:0.20, G:0.10, T:0.15
Consensus pattern (30 bp):
AACAAACAGATGCAAAATCCAAACAGATTA
Found at i:173175 original size:10 final size:11
Alignment explanation
Indices: 173158--173209 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
173148 GGCCTATTTT
173158 TATTTTAAAAA
1 TATTTTAAAAA
173169 T-TTTT-AAAA
1 TATTTTAAAAA
**
173178 -ATTAAAAAAA
1 TATTTTAAAAA
173188 GTATTTTAAAAA
1 -TATTTTAAAAA
173200 TATTTTAAAA
1 TATTTTAAAA
173210 TTAAAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
9 6 0.18
10 8 0.24
11 11 0.33
12 8 0.24
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:173219 original size:32 final size:31
Alignment explanation
Indices: 173158--173218 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
173148 GGCCTATTTT
173158 TATTTTAAAAATTTTTAAAAATTAAAAAAAG
1 TATTTTAAAAATTTTTAAAAATTAAAAAAAG
173189 TATTTTAAAAATATTTT-AAAATTAAAAAAA
1 TATTTTAAAAAT-TTTTAAAAATTAAAAAAA
173219 ATTAAAANNN
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 25 0.86
32 4 0.14
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (31 bp):
TATTTTAAAAATTTTTAAAAATTAAAAAAAG
Found at i:182423 original size:17 final size:17
Alignment explanation
Indices: 182401--182453 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
182391 TCTTCAACAG
182401 ACAGATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
*
182418 ACAGAT--TAAA--CAA
1 ACAGATGCAAAATCCAA
*
182431 ACATATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
182448 ACAGAT
1 ACAGAT
182454 TCTTCAACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 8 0.29
15 6 0.21
17 14 0.50
ACGTcount: A:0.55, C:0.21, G:0.09, T:0.15
Consensus pattern (17 bp):
ACAGATGCAAAATCCAA
Found at i:182441 original size:30 final size:30
Alignment explanation
Indices: 182396--182454 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
182386 AAGAATCTTC
*
182396 AACAGACAGATGCAAAATCCAAACAGATTA
1 AACAAACAGATGCAAAATCCAAACAGATTA
*
182426 AACAAACATATGCAAAATCCAAACAGATT
1 AACAAACAGATGCAAAATCCAAACAGATT
182455 CTTCAACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.54, C:0.20, G:0.10, T:0.15
Consensus pattern (30 bp):
AACAAACAGATGCAAAATCCAAACAGATTA
Found at i:183280 original size:10 final size:11
Alignment explanation
Indices: 183263--183314 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
183253 GGCTTATTTT
183263 TATTTTAAAAA
1 TATTTTAAAAA
183274 T-TTTT-AAAA
1 TATTTTAAAAA
**
183283 -ATTAAAAAAA
1 TATTTTAAAAA
183293 GTATTTTAAAAA
1 -TATTTTAAAAA
183305 TATTTTAAAA
1 TATTTTAAAA
183315 TTAAAAAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
9 6 0.18
10 8 0.24
11 11 0.33
12 8 0.24
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:183301 original size:31 final size:31
Alignment explanation
Indices: 183263--183344 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 31
183253 GGCTTATTTT
183263 TATTTTAAAAAT-TTTTAAAAATTAAAAAAAG
1 TATTTTAAAAATATTTT-AAAATTAAAAAAAG
183294 TATTTTAAAAATATTTTAAAATTAAAAAAA-
1 TATTTTAAAAATATTTTAAAATTAAAAAAAG
* *
183324 CA-TTAAAAAAGTATTTTAAAA
1 TATTTTAAAAA-TATTTTAAAA
183345 ATATTTGATT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
29 7 0.15
30 11 0.23
31 25 0.53
32 4 0.09
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (31 bp):
TATTTTAAAAATATTTTAAAATTAAAAAAAG
Found at i:189968 original size:32 final size:31
Alignment explanation
Indices: 189927--190004 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
189917 GAATGTACTG
*
189927 AGCTC-TCAAAAATTTTGAAAAATTTTCATTA
1 AGCTCTTCAAAAATTTTGAAAAATCTT-ATTA
* * *
189958 GGCTCTTCAAAATTTTTGGAAAATCTTATTA
1 AGCTCTTCAAAAATTTTGAAAAATCTTATTA
* *
189989 AGCCCTCCAAAAATTT
1 AGCTCTTCAAAAATTT
190005 GGGAATATTC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
31 20 0.53
32 18 0.47
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (31 bp):
AGCTCTTCAAAAATTTTGAAAAATCTTATTA
Found at i:190902 original size:2 final size:2
Alignment explanation
Indices: 190889--190930 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
190879 AAAAAGAAAA
*
190889 AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
190930 A
1 A
190931 CACCTTTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:190902 original size:10 final size:10
Alignment explanation
Indices: 190883--190930 Score: 57
Period size: 10 Copynumber: 5.1 Consensus size: 10
190873 ACATTGAAAA
*
190883 AGAAAAAGAG
1 AGAAAGAGAG
190893 AGAAAGAGAG
1 AGAAAGAGAG
190903 AG--AGAGAG
1 AGAAAGAGAG
*
190911 AGAGAGAGAG
1 AGAAAGAGAG
190921 AG-AAGAGAG
1 AGAAAGAGAG
190930 A
1 A
190931 CACCTTTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
8 8 0.24
9 7 0.21
10 19 0.56
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (10 bp):
AGAAAGAGAG
Found at i:207802 original size:29 final size:30
Alignment explanation
Indices: 207739--207803 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
207729 GAAAATTCTC
207739 ATTAAACCTCCAAAATTTTTGAAAAAATTAA
1 ATTAAACCTCCAAAATTTTTGAAAAAA-TAA
* *
207770 ATTAAACCT-CAAATTTTTTTAAAAAA-AA
1 ATTAAACCTCCAAAATTTTTGAAAAAATAA
207798 GATTAA
1 -ATTAA
207804 TTAAGCTCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 2 0.06
29 5 0.16
30 15 0.48
31 9 0.29
ACGTcount: A:0.52, C:0.11, G:0.03, T:0.34
Consensus pattern (30 bp):
ATTAAACCTCCAAAATTTTTGAAAAAATAA
Found at i:217071 original size:22 final size:23
Alignment explanation
Indices: 217030--217075 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
217020 AAGCCCGCCC
217030 ATATTATTATTTTTTAAATATTT
1 ATATTATTATTTTTTAAATATTT
217053 ATATTA-TATTATTTT-AATATTT
1 ATATTATTATT-TTTTAAATATTT
217075 A
1 A
217076 ATAAAATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
ATATTATTATTTTTTAAATATTT
Found at i:220937 original size:33 final size:34
Alignment explanation
Indices: 220834--220938 Score: 115
Period size: 34 Copynumber: 3.1 Consensus size: 34
220824 AAACTCATGT
* * * *
220834 TAAGCAAGTTTATTGCTACTGTAATGATTTGTTA
1 TAAGCATGATTATTGCTACCGTATTGATTTGTTA
* * *
220868 TAAGCATGATAATT-CTTACCATATTGATTTGCTA
1 TAAGCATGATTATTGC-TACCGTATTGATTTGTTA
*
220902 TAAGCATG-TTATTGCTACCGTATTGATCTGTTA
1 TAAGCATGATTATTGCTACCGTATTGATTTGTTA
220935 TAAG
1 TAAG
220939 TATGTCATAT
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
33 24 0.41
34 34 0.59
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (34 bp):
TAAGCATGATTATTGCTACCGTATTGATTTGTTA
Found at i:222826 original size:29 final size:31
Alignment explanation
Indices: 222776--222836 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 31
222766 ATACATTTGA
*
222776 ACCACAATAAAAATTCTGTGTA-CATAATTGT
1 ACCACAATAAAAATTCTATGTATCA-AATTGT
*
222807 ACCA-AATTAAAATT-TATGTATCAAATTGT
1 ACCACAATAAAAATTCTATGTATCAAATTGT
222836 A
1 A
222837 TACTGAGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.44
30 11 0.41
31 4 0.15
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.34
Consensus pattern (31 bp):
ACCACAATAAAAATTCTATGTATCAAATTGT
Found at i:234802 original size:34 final size:34
Alignment explanation
Indices: 234763--234828 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
234753 AGTATGAAAG
*
234763 TATAAATAAAACATATGTACGATATATGAATACA
1 TATAAATAAAACATATGGACGATATATGAATACA
** *
234797 TATAAATAAAATGTATGGATGATATATGAATA
1 TATAAATAAAACATATGGACGATATATGAATA
234829 AATGTATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.32
Consensus pattern (34 bp):
TATAAATAAAACATATGGACGATATATGAATACA
Found at i:237571 original size:41 final size:40
Alignment explanation
Indices: 237521--237600 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 40
237511 AAACTAGCAG
**
237521 TTTAACAATTTATATGCAAGGAACTAGCAAAAAATCAACAA
1 TTTAACAATTTATATGCAACAAACTAGC-AAAAATCAACAA
* *
237562 TTTAGCAATTTATATGCAACAAATTAGCAAAAATCAACA
1 TTTAACAATTTATATGCAACAAACTAGCAAAAATCAACA
237601 CGAAATAACT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
40 11 0.31
41 24 0.69
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (40 bp):
TTTAACAATTTATATGCAACAAACTAGCAAAAATCAACAA
Found at i:239899 original size:15 final size:15
Alignment explanation
Indices: 239879--239913 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
239869 GAAGTAAATG
239879 TGATAACATTAGGAT
1 TGATAACATTAGGAT
239894 TGATAACATTAGGAT
1 TGATAACATTAGGAT
239909 TGATA
1 TGATA
239914 GCGACACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (15 bp):
TGATAACATTAGGAT
Found at i:249404 original size:55 final size:55
Alignment explanation
Indices: 249325--249435 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
249315 TTTTCTTAAA
* *
249325 TCCTTACATACAAGAAGGTTAGAAAGCTTACCATTTTACAAAATTTCCAGTTTCT
1 TCCTTACATACAAAAAGGTTAGAAAGCTTACCATCTTACAAAATTTCCAGTTTCT
249380 TCCTTACATACAAAAAGGTTAGAAAGCTTACCATCTTACAAAATTTCCAGTTTCT
1 TCCTTACATACAAAAAGGTTAGAAAGCTTACCATCTTACAAAATTTCCAGTTTCT
249435 T
1 T
249436 AGGCTCAAAC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (55 bp):
TCCTTACATACAAAAAGGTTAGAAAGCTTACCATCTTACAAAATTTCCAGTTTCT
Found at i:253335 original size:22 final size:22
Alignment explanation
Indices: 253309--253376 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 22
253299 ATATCTAAAC
*
253309 AATAACAACAAAATAGTAGCTA
1 AATAACAACAAAATAGTAGCAA
* * * *
253331 TATAATAGCAAAATGGTAGCAA
1 AATAACAACAAAATAGTAGCAA
* *
253353 AACAACAACAAAATAGTAGAAA
1 AATAACAACAAAATAGTAGCAA
253375 AA
1 AA
253377 AATTTAGGCA
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.16
Consensus pattern (22 bp):
AATAACAACAAAATAGTAGCAA
Found at i:260299 original size:32 final size:32
Alignment explanation
Indices: 260258--260322 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
260248 CTTTTTATGG
260258 GAAAATATTTAGACTCTACAAGCAGAGTTAGA
1 GAAAATATTTAGACTCTACAAGCAGAGTTAGA
260290 GAAAATATTTAGACTCTACAAGCAGAGTTAGA
1 GAAAATATTTAGACTCTACAAGCAGAGTTAGA
260322 G
1 G
260323 GTTAAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (32 bp):
GAAAATATTTAGACTCTACAAGCAGAGTTAGA
Found at i:261763 original size:24 final size:24
Alignment explanation
Indices: 261735--261781 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
261725 ATGAAATAAT
*
261735 TAAAATTTTAAAAATTATTAAAAA
1 TAAAATATTAAAAATTATTAAAAA
* *
261759 TAAAATATTGATAATTATTAAAA
1 TAAAATATTAAAAATTATTAAAA
261782 TTATTTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (24 bp):
TAAAATATTAAAAATTATTAAAAA
Found at i:261765 original size:33 final size:33
Alignment explanation
Indices: 261728--261791 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
261718 AAAATGTATG
261728 AAATAATT-AAAATT-TTAAAAATTATTAAAAATA
1 AAAT-ATTGAAAATTATT-AAAATTATTAAAAATA
* *
261761 AAATATTGATAATTATTAAAATTATTTAAAA
1 AAATATTGAAAATTATTAAAATTATTAAAAA
261792 CATATACAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 3 0.11
33 22 0.81
34 2 0.07
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (33 bp):
AAATATTGAAAATTATTAAAATTATTAAAAATA
Found at i:261886 original size:123 final size:124
Alignment explanation
Indices: 261734--261981 Score: 480
Period size: 123 Copynumber: 2.0 Consensus size: 124
261724 TATGAAATAA
261734 TTAAAATTTTAAAAATTATTAAAAATAAAATATTGATAATTATTAAAATTATTTAAAACATATAC
1 TTAAAATTTT-AAAATTATTAAAAATAAAATATTGATAATTATTAAAATTATTTAAAACATATAC
261799 AATTTGAAAGCTAAACAAACATAAATATTTTTTTTTACCATCTTGAGAACTTTTTTTTTT
65 AATTTGAAAGCTAAACAAACATAAATATTTTTTTTTACCATCTTGAGAACTTTTTTTTTT
261859 TTAAAATTTT-AAATTATTAAAAATAAAATATTGATAATTATTAAAATTATTTAAAACATATACA
1 TTAAAATTTTAAAATTATTAAAAATAAAATATTGATAATTATTAAAATTATTTAAAACATATACA
261923 ATTTGAAAGCTAAACAAACATAAATATTTTTTTTTACCATCTTGAGAACTTTTTTTTTT
66 ATTTGAAAGCTAAACAAACATAAATATTTTTTTTTACCATCTTGAGAACTTTTTTTTTT
261982 GTACTATTTT
Statistics
Matches: 123, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
123 113 0.92
125 10 0.08
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (124 bp):
TTAAAATTTTAAAATTATTAAAAATAAAATATTGATAATTATTAAAATTATTTAAAACATATACA
ATTTGAAAGCTAAACAAACATAAATATTTTTTTTTACCATCTTGAGAACTTTTTTTTTT
Found at i:263231 original size:60 final size:60
Alignment explanation
Indices: 263167--263306 Score: 192
Period size: 59 Copynumber: 2.4 Consensus size: 60
263157 GAATTAGAAA
* * *
263167 TAAATTGATAAATTTTATAAATATCGAGAGTTAAATTTATTAAATTTTTAGAATCCGAAT
1 TAAATTGATCAATTTTATAAATATCAAGAGTTAAATTTATTAAATTTTTAAAATCCGAAT
* * * *
263227 TAAATTGA-CAGTTTTATAAATATTAAGAGTTAAATTTATTGAATTTTTAAAATTCGAAT
1 TAAATTGATCAATTTTATAAATATCAAGAGTTAAATTTATTAAATTTTTAAAATCCGAAT
* *
263286 TAAAATGATCAATTTTGTAAA
1 TAAATTGATCAATTTTATAAA
263307 CATTGAGAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
59 51 0.74
60 18 0.26
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (60 bp):
TAAATTGATCAATTTTATAAATATCAAGAGTTAAATTTATTAAATTTTTAAAATCCGAAT
Found at i:263320 original size:59 final size:59
Alignment explanation
Indices: 263177--263321 Score: 157
Period size: 59 Copynumber: 2.5 Consensus size: 59
263167 TAAATTGATA
* ** * * *
263177 AATTTTATAAATATCGAGAGTTAAATTTATTAAATTTTTAGAATCCGAATTAAATTGAC
1 AATTTTATAAACATTAAGAGATAAATTTATTAAATTTTTAAAATCCGAATTAAAATGAC
* * * * *
263236 AGTTTTATAAATATTAAGAGTTAAATTTATTGAATTTTTAAAATTCGAATTAAAATGATC
1 AATTTTATAAACATTAAGAGATAAATTTATTAAATTTTTAAAATCCGAATTAAAATGA-C
* *
263296 AATTTTGTAAACATTGAGA-ATAAATT
1 AATTTTATAAACATTAAGAGATAAATT
263322 AGATTTAGGA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
59 57 0.78
60 16 0.22
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.41
Consensus pattern (59 bp):
AATTTTATAAACATTAAGAGATAAATTTATTAAATTTTTAAAATCCGAATTAAAATGAC
Found at i:270558 original size:6 final size:6
Alignment explanation
Indices: 270547--270579 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
270537 CAATAGATCT
270547 AATTCA AATTCA AATTCA AATTCA AATTCA AAT
1 AATTCA AATTCA AATTCA AATTCA AATTCA AAT
270580 CCATTGATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (6 bp):
AATTCA
Found at i:272053 original size:121 final size:122
Alignment explanation
Indices: 271867--272110 Score: 481
Period size: 121 Copynumber: 2.0 Consensus size: 122
271857 ATATATAATA
271867 CTGCTCTAATGTAAACATTAAAATAATGTGAAGATGATTATATAAGAAATGTATAAAATTATTAA
1 CTGCTCTAATGTAAACATTAAAATAATGTGAAGATGATTATATAAGAAATGTATAAAATTATTAA
271932 ATATTAAAATAATATAATATAAATATTTAAAATTAAAATTAAAATAATATTGACGGG
66 ATATTAAAATAATATAATATAAATATTTAAAATTAAAATTAAAATAATATTGACGGG
271989 CTGCTCTAAT-TAAACATTAAAATAATGTGAAGATGATTATATAAGAAATGTATAAAATTATTAA
1 CTGCTCTAATGTAAACATTAAAATAATGTGAAGATGATTATATAAGAAATGTATAAAATTATTAA
272053 ATATTAAAATAATATAATATAAATATTTAAAATTAAAATTAAAATAATATTGACGGG
66 ATATTAAAATAATATAATATAAATATTTAAAATTAAAATTAAAATAATATTGACGGG
272110 C
1 C
272111 CTAAAATGGA
Statistics
Matches: 122, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
121 112 0.92
122 10 0.08
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (122 bp):
CTGCTCTAATGTAAACATTAAAATAATGTGAAGATGATTATATAAGAAATGTATAAAATTATTAA
ATATTAAAATAATATAATATAAATATTTAAAATTAAAATTAAAATAATATTGACGGG
Found at i:273170 original size:17 final size:18
Alignment explanation
Indices: 273137--273170 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
273127 TCATAACAGT
*
273137 TTTTATAATTTTTAAAAC
1 TTTTATAATTTTAAAAAC
273155 TTTTA-AATTTTAAAAA
1 TTTTATAATTTTAAAAA
273171 AATAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTTATAATTTTAAAAAC
Found at i:279327 original size:11 final size:11
Alignment explanation
Indices: 279303--279336 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
279293 ATTGAATCAA
* *
279303 TTTTATAATTT
1 TTTTAAAATAT
279314 TTTTAAAATAT
1 TTTTAAAATAT
279325 TTTTAAAATAT
1 TTTTAAAATAT
279336 T
1 T
279337 AATTTATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:280269 original size:14 final size:14
Alignment explanation
Indices: 280236--280268 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
280226 CGTTGATTAA
*
280236 AATTTTATTAAATT
1 AATTTTAATAAATT
280250 AATTTTAATAAATT
1 AATTTTAATAAATT
280264 -ATTTT
1 AATTTT
280269 TTTTGAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
AATTTTAATAAATT
Found at i:280492 original size:19 final size:19
Alignment explanation
Indices: 280468--280505 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
280458 AACCACTGTC
*
280468 ACCCACTATAATCAAATTT
1 ACCCACCATAATCAAATTT
*
280487 ACCCACCGTAATCAAATTT
1 ACCCACCATAATCAAATTT
280506 GTTATTAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.29, G:0.03, T:0.29
Consensus pattern (19 bp):
ACCCACCATAATCAAATTT
Found at i:281101 original size:28 final size:31
Alignment explanation
Indices: 281042--281099 Score: 93
Period size: 29 Copynumber: 1.9 Consensus size: 31
281032 GGGTTTGGGA
*
281042 TGGGAGGAGAGTAAAAGTTTTGGGGGAAAAG
1 TGGGAGGAGAGTAAAAGTATTGGGGGAAAAG
281073 TGGGA-GAGAGT-AAAGTATTGGGGGAAA
1 TGGGAGGAGAGTAAAAGTATTGGGGGAAA
281100 GTAAAAAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 15 0.58
30 6 0.23
31 5 0.19
ACGTcount: A:0.36, C:0.00, G:0.45, T:0.19
Consensus pattern (31 bp):
TGGGAGGAGAGTAAAAGTATTGGGGGAAAAG
Found at i:286375 original size:3 final size:3
Alignment explanation
Indices: 286293--286357 Score: 121
Period size: 3 Copynumber: 21.7 Consensus size: 3
286283 TTGCATGCCC
*
286293 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
286341 TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
286358 TATCTTTCTT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:305544 original size:92 final size:95
Alignment explanation
Indices: 305319--305588 Score: 252
Period size: 94 Copynumber: 2.9 Consensus size: 95
305309 GATCCAAAAA
* ** * * * *
305319 AAATCTATCATAGTAAATATTATTTCCCTGAAGTTGCAGTTGAGC-AGATTGAAGCTAAAAATCC
1 AAATCTACCATAGCGAATATTATCTCCCTGAAGTTGCAGTGGAGCAAGATTAAAACTAAAAATCC
*
305383 TATACCCTTGAAGTTGCAGTAGGTCGGATT
66 TATACCCTTGAAGTTACAGTAGGTCGGATT
* * *
305413 AAATCTACCATAGCGAATCTTATCCCCCTGAAGTTGCAGTGGAGCAAGA-TAAAACTACAAATTC
1 AAATCTACCATAGCGAATATTATCTCCCTGAAGTTGCAGTGGAGCAAGATTAAAACTA-AAAATC
* * *
305477 C-ATTCCC-TGAAGTTACAGTGGGT-TGATT
65 CTATACCCTTGAAGTTACAGTAGGTCGGATT
* * * * *
305505 GAAA-CTA-CAGTGGTGAATATTATCTCCCTGAAGTTGCAGTGGAGC-AGATTGAAGCTACAAAT
1 -AAATCTACCA-TAGCGAATATTATCTCCCTGAAGTTGCAGTGGAGCAAGATTAAAACTAAAAAT
* *
305567 CTTAT-CTCCTTGAAGTTGCAGT
64 CCTATAC-CCTTGAAGTTACAGT
305589 GGAGCAAATT
Statistics
Matches: 144, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
91 10 0.07
92 48 0.33
93 28 0.19
94 49 0.34
95 9 0.06
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (95 bp):
AAATCTACCATAGCGAATATTATCTCCCTGAAGTTGCAGTGGAGCAAGATTAAAACTAAAAATCC
TATACCCTTGAAGTTACAGTAGGTCGGATT
Found at i:305587 original size:44 final size:44
Alignment explanation
Indices: 305333--305817 Score: 274
Period size: 44 Copynumber: 10.7 Consensus size: 44
305323 CTATCATAGT
* * * *
305333 AAATATTATTTCCCTGAAGTTGCAGTTGAGCAGATTGAAGCTAA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * * *
305377 AAATCCTATAC-CCTTGAAGTTGCAGTAGG-TCGGATTAAATCTACC
1 AAATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGCTA-C
* * *
305422 ATAGCGAATCTTATCCCCCTGAAGTTGCAGTGGAGCAAGA-TAAAACTAC
1 --A---AATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTGAAGCTAC
* * ** *
305471 AAAT-TCCAT-TCCCTGAAGTTACAGTGG-GTTGATTGAAACTAC
1 AAATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
*
305513 AGTGGTGAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
1 A------AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * *
305563 AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTAAAGCTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* ** *
305607 AAGTCTTATCTCTTTGAAGTTGCAGTGGAACAAGA-TGAAGCTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTGAAGCTAC
* * *
305651 AAGTTTTATC-CCCTTGAAGTTGCAGTGGAACAAGA-TGAAGCTAC
1 AAATCTTATCTCCC-TGAAGTTGCAGTGGAGC-AGATTGAAGCTAC
** * * * * *
305695 TGATCCTATGC-CCCTGAAGTTGCAGTGGTGTAGAATGAAGTTATAGTCAC
1 AAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-----CT-AC
*
305745 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGA-TGAGGAC-AC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTGAAG-CTAC
* * *
305789 AAATCCTATATCCTTGAAGTTGCAGTGGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGA
305818 TTGGATTGAA
Statistics
Matches: 350, Mismatches: 57, Indels: 68
0.74 0.12 0.14
Matches are distributed among these distances:
41 2 0.01
42 10 0.03
43 21 0.06
44 201 0.57
45 7 0.02
46 1 0.00
47 2 0.01
48 5 0.01
49 24 0.07
50 72 0.21
51 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
Found at i:316176 original size:17 final size:17
Alignment explanation
Indices: 316154--316187 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
316144 TTTTAGTCAC
*
316154 TTATTTTATTTTTTAAT
1 TTATTTTATTTCTTAAT
316171 TTATTTTATTTCTTAAT
1 TTATTTTATTTCTTAAT
316188 AGTTTTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
TTATTTTATTTCTTAAT
Found at i:326952 original size:28 final size:30
Alignment explanation
Indices: 326917--326985 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
326907 ATAAAAAATA
326917 ACTAAAATATAATAA-AATTTTT-TTATTT
1 ACTAAAATATAATAATAATTTTTATTATTT
* *
326945 A-TCAAAATATTATAATTATTTTTATTATTT
1 ACT-AAAATATAATAATAATTTTTATTATTT
326975 ACTAAAATATA
1 ACTAAAATATA
326986 TCAAAAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 1 0.03
28 12 0.35
29 6 0.18
30 14 0.41
31 1 0.03
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
ACTAAAATATAATAATAATTTTTATTATTT
Found at i:327069 original size:27 final size:27
Alignment explanation
Indices: 327031--327096 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
327021 AGGTCAATGG
* **
327031 CATTGGCGGCACCAAATGTGCCAAAGT
1 CATTGGCGGCACCAAAGGTGCCAAAAC
327058 CATTGGCGGCACCAAAGGTGCCAAAAC
1 CATTGGCGGCACCAAAGGTGCCAAAAC
*
327085 CATTAGCGGCAC
1 CATTGGCGGCAC
327097 TACTCGTGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.30, C:0.29, G:0.26, T:0.15
Consensus pattern (27 bp):
CATTGGCGGCACCAAAGGTGCCAAAAC
Found at i:327340 original size:3 final size:3
Alignment explanation
Indices: 327334--327365 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
327324 AGTATTATTA
327334 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
327366 AGTATTAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:328988 original size:86 final size:86
Alignment explanation
Indices: 328843--329016 Score: 330
Period size: 86 Copynumber: 2.0 Consensus size: 86
328833 CTGTATGGGG
*
328843 ATTACGATTCGTTGTATAACGAGTTTCAAGGTTGGATAGCTGGTATGCGGGAGTACGTACCAAGG
1 ATTACGATTCGTTGTATAACGAGTTTCAAGGTTGGATAGCTGCTATGCGGGAGTACGTACCAAGG
328908 ACTGTGATTGAGTTGCAGACA
66 ACTGTGATTGAGTTGCAGACA
*
328929 ATTACGATTCGTTGTATAACGAGTTTCAAGGTTGGATAGCTGCTATGCGGGAGTACGTACCGAGG
1 ATTACGATTCGTTGTATAACGAGTTTCAAGGTTGGATAGCTGCTATGCGGGAGTACGTACCAAGG
328994 ACTGTGATTGAGTTGCAGACA
66 ACTGTGATTGAGTTGCAGACA
329015 AT
1 AT
329017 GCCATATTAC
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 86 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.29
Consensus pattern (86 bp):
ATTACGATTCGTTGTATAACGAGTTTCAAGGTTGGATAGCTGCTATGCGGGAGTACGTACCAAGG
ACTGTGATTGAGTTGCAGACA
Found at i:332007 original size:27 final size:27
Alignment explanation
Indices: 331969--332020 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
331959 CCACATATTA
331969 GTGCCACATTTTTATTCCTCTCCATTG
1 GTGCCACATTTTTATTCCTCTCCATTG
*
331996 GTGCCACTTTTTTATTCCTCTCCAT
1 GTGCCACATTTTTATTCCTCTCCAT
332021 CACCCTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.31, G:0.10, T:0.46
Consensus pattern (27 bp):
GTGCCACATTTTTATTCCTCTCCATTG
Found at i:332743 original size:19 final size:20
Alignment explanation
Indices: 332721--332791 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 20
332711 CCTTCCTTCC
*
332721 CTCTTCTTCTTT-TTTTTTT
1 CTCTTCTCCTTTCTTTTTTT
332740 CTCTTCTCCTTTCCTTTTCTTT
1 CTCTTCTCCTTT-CTTTT-TTT
*
332762 C-CTTCT-TTTTCTTTCTTTT
1 CTCTTCTCCTTTCTTT-TTTT
332781 -TCTTCTCCTTT
1 CTCTTCTCCTTT
332792 TCNNNNNNNN
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
19 23 0.53
20 7 0.16
21 9 0.21
22 4 0.09
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (20 bp):
CTCTTCTCCTTTCTTTTTTT
Found at i:338555 original size:43 final size:43
Alignment explanation
Indices: 338495--338632 Score: 240
Period size: 43 Copynumber: 3.2 Consensus size: 43
338485 ATTGATTTGA
* *
338495 GATTTACGTGTAAGACCATGTCTGAGACATTGGCATCGTATGT
1 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAT
*
338538 GATTTACGTGTAAGACCATGTCTGGGGCATTGGCATCGTATAT
1 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAT
*
338581 GATTTACGTGTAAGACCATGTTTGGGACATTGGCATCGTATAT
1 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAT
338624 GATTTACGT
1 GATTTACGT
338633 NNNNNNNNNN
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAT
Found at i:340461 original size:6 final size:6
Alignment explanation
Indices: 340439--340482 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
340429 GCTATAATGT
* * * *
340439 CACCCC CACGTC CACCTC TACCTC CACCTC TACCTC CACCTC CA
1 CACCTC CACCTC CACCTC CACCTC CACCTC CACCTC CACCTC CA
340483 AAGGATCAAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.18, C:0.61, G:0.02, T:0.18
Consensus pattern (6 bp):
CACCTC
Found at i:340464 original size:12 final size:12
Alignment explanation
Indices: 340449--340480 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
340439 CACCCCCACG
340449 TCCACCTCTACC
1 TCCACCTCTACC
340461 TCCACCTCTACC
1 TCCACCTCTACC
340473 TCCACCTC
1 TCCACCTC
340481 CAAAGGATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.16, C:0.59, G:0.00, T:0.25
Consensus pattern (12 bp):
TCCACCTCTACC
Found at i:340930 original size:114 final size:114
Alignment explanation
Indices: 340767--341016 Score: 369
Period size: 114 Copynumber: 2.2 Consensus size: 114
340757 ACCTCTATCT
* * *
340767 CCAACAAACACATCTCCACCAATATCTACACCTTTAACATCACCTATGATACCAT-TTCCACCTC
1 CCAACAAACTCACCTCCACCAATATCTACACCTTTAAAATCACCTATGATACCATCTT-CACCTC
* * *
340831 CAAGGAACTTGCGACCACCTTCACCTCTAAGAAACTCATCTTTTCCA-TCA
65 CAAGGAACTTGCGACCACCTCCACCTCTAAGAAACTCACCTTCTCCACT-A
* *
340881 CCAACAAACTCACCTCCACCAATATCTACTCCTTTAAAATCACCTATGATACTATCTTCACCTCC
1 CCAACAAACTCACCTCCACCAATATCTACACCTTTAAAATCACCTATGATACCATCTTCACCTCC
*
340946 AAGGAACTTGCGACCACCTCCACCTCTAAGAAACTCGCCTTCTCCACTA
66 AAGGAACTTGCGACCACCTCCACCTCTAAGAAACTCACCTTCTCCACTA
* *
340995 CTAACAAACTCACATCCACCAA
1 CCAACAAACTCACCTCCACCAA
341017 GATCATTGTC
Statistics
Matches: 123, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
114 120 0.98
115 3 0.02
ACGTcount: A:0.33, C:0.38, G:0.05, T:0.24
Consensus pattern (114 bp):
CCAACAAACTCACCTCCACCAATATCTACACCTTTAAAATCACCTATGATACCATCTTCACCTCC
AAGGAACTTGCGACCACCTCCACCTCTAAGAAACTCACCTTCTCCACTA
Found at i:342976 original size:33 final size:33
Alignment explanation
Indices: 342939--343016 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
342929 TGGCCCTGCC
* **
342939 ATGGTCTTACACTCGTA-ATGCCATAACCCAGTT
1 ATGGTCTTACACTC-AAGATGCCATAACCCAACT
*
342972 ATGGTCTTATCA-TCAAGATGCCATAGCCCAACT
1 ATGGTCTTA-CACTCAAGATGCCATAACCCAACT
343005 ATGGTCTTACAC
1 ATGGTCTTACAC
343017 GTATACATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
32 3 0.08
33 33 0.87
34 2 0.05
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (33 bp):
ATGGTCTTACACTCAAGATGCCATAACCCAACT
Found at i:345147 original size:34 final size:35
Alignment explanation
Indices: 345103--345169 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
345093 CAGTAAAATA
*
345103 TTTTCCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
345137 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
345170 CTGGTTTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:346897 original size:17 final size:17
Alignment explanation
Indices: 346860--346898 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
346850 GGAAATCATG
*
346860 TTATAAGTGTAATATGG
1 TTATAAGTGTAATATGA
*
346877 TTATAAGTGTAATCTGA
1 TTATAAGTGTAATATGA
346894 TTATA
1 TTATA
346899 TTGTGAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.44
Consensus pattern (17 bp):
TTATAAGTGTAATATGA
Found at i:348866 original size:5 final size:5
Alignment explanation
Indices: 348856--348882 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
348846 GTCTCCTACC
348856 TTGCT TTGCT TTGCT TTGCT TTGCT TT
1 TTGCT TTGCT TTGCT TTGCT TTGCT TT
348883 TCCATCCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.19, T:0.63
Consensus pattern (5 bp):
TTGCT
Found at i:366918 original size:28 final size:26
Alignment explanation
Indices: 366868--366920 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
366858 TTTAAAATAC
*
366868 TTTTAAAATATTTTTATTTTTATTAT
1 TTTTAAAATATTTTTATGTTTATTAT
366894 TTTTAAAATAATTTTTAATGTTTATTA
1 TTTTAAAAT-ATTTTT-ATGTTTATTA
366921 AAAAATGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 9 0.38
27 6 0.25
28 9 0.38
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTTAAAATATTTTTATGTTTATTAT
Found at i:366921 original size:22 final size:21
Alignment explanation
Indices: 366883--366923 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
366873 AAATATTTTT
*
366883 ATTTTTATTATTTTTAAAATA
1 ATTTTTAATATTTTTAAAATA
*
366904 ATTTTTAATGTTTATTAAAA
1 ATTTTTAATATTT-TTAAAA
366924 AATGGGTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTTTAATATTTTTAAAATA
Found at i:369107 original size:16 final size:16
Alignment explanation
Indices: 369086--369140 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
369076 ATAAAAGTTT
369086 GAGGGAAAGTAAATAG
1 GAGGGAAAGTAAATAG
*
369102 GAGGG--AGTATAATTTTG
1 GAGGGAAAGTA-AA--TAG
369119 GAGGGAAAGTAAATAG
1 GAGGGAAAGTAAATAG
369135 GAGGGA
1 GAGGGA
369141 GTATAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
14 4 0.12
15 2 0.06
16 13 0.41
17 7 0.22
18 2 0.06
19 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.40, T:0.18
Consensus pattern (16 bp):
GAGGGAAAGTAAATAG
Found at i:369123 original size:17 final size:17
Alignment explanation
Indices: 369101--369157 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
369091 AAAGTAAATA
369101 GGAGGGAGTATAATTTT
1 GGAGGGAGTATAATTTT
*
369118 GGAGGGAAAGTA-AA--TA
1 GGAGGG--AGTATAATTTT
369134 GGAGGGAGTATAATTTT
1 GGAGGGAGTATAATTTT
369151 GGAGGGA
1 GGAGGGA
369158 AAATATTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 4 0.12
15 2 0.06
16 7 0.21
17 14 0.42
18 2 0.06
19 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.40, T:0.25
Consensus pattern (17 bp):
GGAGGGAGTATAATTTT
Found at i:369124 original size:33 final size:33
Alignment explanation
Indices: 369086--369159 Score: 148
Period size: 33 Copynumber: 2.2 Consensus size: 33
369076 ATAAAAGTTT
369086 GAGGGAAAGTAAATAGGAGGGAGTATAATTTTG
1 GAGGGAAAGTAAATAGGAGGGAGTATAATTTTG
369119 GAGGGAAAGTAAATAGGAGGGAGTATAATTTTG
1 GAGGGAAAGTAAATAGGAGGGAGTATAATTTTG
369152 GAGGGAAA
1 GAGGGAAA
369160 ATATTAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.41, C:0.00, G:0.38, T:0.22
Consensus pattern (33 bp):
GAGGGAAAGTAAATAGGAGGGAGTATAATTTTG
Found at i:369498 original size:9 final size:9
Alignment explanation
Indices: 369484--369520 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
369474 TATAGTTTGA
369484 TATTCGAAT
1 TATTCGAAT
369493 TATTCGAAT
1 TATTCGAAT
*
369502 TATTCGAGT
1 TATTCGAAT
*
369511 TATTCAAAT
1 TATTCGAAT
369520 T
1 T
369521 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:373600 original size:37 final size:40
Alignment explanation
Indices: 373504--373643 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
373494 AACACACCAG
* **
373504 TTTGGCACCCAATGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGGCACCCAGTGCCTCATCGGATAAACCGAAGTAATAA
* ** *
373544 TTTGACACCCAGTATCTCATCGGTTAAACCGAAGT-A-AA
1 TTTGGCACCCAGTGCCTCATCGGATAAACCGAAGTAATAA
* * *
373582 -TTGGCACCCAGTGCCTCATCGAATTAATA-TGAAGTAGTAA
1 TTTGGCACCCAGTGCCTCATCGGA-TAA-ACCGAAGTAATAA
* * *
373622 ATTGACACCCAGTGTCTCATCG
1 TTTGGCACCCAGTGCCTCATCG
373644 ACTCGAAGTC
Statistics
Matches: 79, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
37 18 0.23
38 10 0.13
39 2 0.03
40 30 0.38
41 19 0.24
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (40 bp):
TTTGGCACCCAGTGCCTCATCGGATAAACCGAAGTAATAA
Found at i:373800 original size:19 final size:19
Alignment explanation
Indices: 373775--373827 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
373765 CAATTAAAAT
373775 AATCAATATATTCAATATA
1 AATCAATATATTCAATATA
* *
373794 TATCAAT-TAAATCAATATA
1 AATCAATAT-ATTCAATATA
*
373813 AATTCAATAAATTCA
1 AA-TCAATATATTCA
373828 TTACACACTA
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
18 1 0.04
19 16 0.62
20 9 0.35
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (19 bp):
AATCAATATATTCAATATA
Found at i:374533 original size:11 final size:11
Alignment explanation
Indices: 374519--374586 Score: 68
Period size: 11 Copynumber: 6.2 Consensus size: 11
374509 TTCTCCTTCA
*
374519 TTTCTTTCCTT
1 TTTCTTTCTTT
374530 TTTCTTT-TTT
1 TTTCTTTCTTT
*
374540 TTTCTTTTTTT
1 TTTCTTTCTTT
*
374551 TTTCTTTC-TG
1 TTTCTTTCTTT
*
374561 TTTCGTTTCTATC
1 TTTC-TTTCT-TT
374574 TTTCTTTCTTT
1 TTTCTTTCTTT
374585 TT
1 TT
374587 ATTTGTTTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
10 14 0.29
11 24 0.50
12 5 0.10
13 5 0.10
ACGTcount: A:0.01, C:0.18, G:0.03, T:0.78
Consensus pattern (11 bp):
TTTCTTTCTTT
Found at i:374558 original size:4 final size:4
Alignment explanation
Indices: 374519--374584 Score: 50
Period size: 4 Copynumber: 16.8 Consensus size: 4
374509 TTCTCCTTCA
* *
374519 TTTC TTTC CTT- TTTC TTT- TTT- TTTC TTT- TTTT TTTC TTTC TGTTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC --TTTC
*
374565 GTTTC TATC TTTC TTTC TTT
1 -TTTC TTTC TTTC TTTC TTT
374585 TTATTTGTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
3 11 0.21
4 32 0.62
5 5 0.10
6 4 0.08
ACGTcount: A:0.02, C:0.18, G:0.03, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:377532 original size:17 final size:17
Alignment explanation
Indices: 377512--377545 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
377502 GATATTTGTT
377512 ATTAAAATAAACAAATA
1 ATTAAAATAAACAAATA
*
377529 ATTAAAATAAATAAATA
1 ATTAAAATAAACAAATA
377546 TTATATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
ATTAAAATAAACAAATA
Found at i:378308 original size:16 final size:17
Alignment explanation
Indices: 378284--378316 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
378274 TATGGTAAGC
378284 AAATAATAAGGTAAGTG
1 AAATAATAAGGTAAGTG
*
378301 AAAT-ATAAGTTAAGTG
1 AAATAATAAGGTAAGTG
378317 TTATTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.27
Consensus pattern (17 bp):
AAATAATAAGGTAAGTG
Found at i:378425 original size:36 final size:36
Alignment explanation
Indices: 378385--378456 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
378375 GAATATTGAC
* *
378385 TTGAAAATGGAAAAGT-AAATTTGAATTGAATTGTGA
1 TTGAAAATGAAAAAGTGAAA-TTGAATTGAAATGTGA
*
378421 TTGAAAGTGAAAAAGTGAAATTGAATTGAAATGTGA
1 TTGAAAATGAAAAAGTGAAATTGAATTGAAATGTGA
378457 ATTTGAGAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
36 29 0.91
37 3 0.09
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.31
Consensus pattern (36 bp):
TTGAAAATGAAAAAGTGAAATTGAATTGAAATGTGA
Found at i:378684 original size:23 final size:22
Alignment explanation
Indices: 378656--378765 Score: 127
Period size: 23 Copynumber: 5.0 Consensus size: 22
378646 CGGCTTTGCC
378656 AATCAGGCACTTTATGTGTCGT
1 AATCAGGCACTTTATGTGTCGT
378678 ACATCAGGCACTTTATGTGTCGT
1 A-ATCAGGCACTTTATGTGTCGT
* *
378701 ATCTCAGGCACTGTATGTGTCGT
1 A-ATCAGGCACTTTATGTGTCGT
* **
378724 -ATCAGGCACCTCGTGTGTCGT
1 AATCAGGCACTTTATGTGTCGT
*
378745 -TTCAGGCAC-TTATGTGTCGT
1 AATCAGGCACTTTATGTGTCGT
378765 A
1 A
378766 TATTGATTAG
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
20 9 0.12
21 24 0.32
22 1 0.01
23 41 0.55
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.35
Consensus pattern (22 bp):
AATCAGGCACTTTATGTGTCGT
Found at i:383283 original size:57 final size:58
Alignment explanation
Indices: 383178--383293 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 58
383168 AACAATTTCT
* *
383178 ACTTATAGTAATTATACTAAATCATATAATATATACTCTATAGCAAAATTTTAACATA
1 ACTTATAGTAATTATACAAAATCATATAATATATACTCTAGAGCAAAATTTTAACATA
* * * **
383236 ACTTATGGTAATTATA-AAAATTATATAATATATATTCTAGATTAAAATTTTAACATA
1 ACTTATAGTAATTATACAAAATCATATAATATATACTCTAGAGCAAAATTTTAACATA
383293 A
1 A
383294 ACAAAGAACT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 36 0.71
58 15 0.29
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (58 bp):
ACTTATAGTAATTATACAAAATCATATAATATATACTCTAGAGCAAAATTTTAACATA
Found at i:390423 original size:9 final size:9
Alignment explanation
Indices: 390406--390452 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
390396 TACCTCAATG
*
390406 ATTTAAAAA
1 ATTTCAAAA
*
390415 ATTTTAAAA
1 ATTTCAAAA
*
390424 ATAT-AAAA
1 ATTTCAAAA
390432 ATTTCAAAA
1 ATTTCAAAA
390441 ATGTTCAAAA
1 AT-TTCAAAA
390451 AT
1 AT
390453 AAAAATTATC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.21
9 17 0.52
10 9 0.27
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (9 bp):
ATTTCAAAA
Found at i:391230 original size:9 final size:9
Alignment explanation
Indices: 391213--391259 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
391203 TACCTCAATG
*
391213 ATTTAAAAA
1 ATTTCAAAA
*
391222 ATTTTAAAA
1 ATTTCAAAA
*
391231 ATAT-AAAA
1 ATTTCAAAA
391239 ATTTCAAAA
1 ATTTCAAAA
391248 ATGTTCAAAA
1 AT-TTCAAAA
391258 AT
1 AT
391260 AAAAATTATC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.21
9 17 0.52
10 9 0.27
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (9 bp):
ATTTCAAAA
Found at i:391371 original size:807 final size:807
Alignment explanation
Indices: 390213--391827 Score: 3221
Period size: 807 Copynumber: 2.0 Consensus size: 807
390203 CAGAACTATC
390213 ACTTTTATTTTAAATTTTGGTTAAAAAGGTATTGGCTGGTATTTTATAAAAAAAAATTGTTTTAA
1 ACTTTTATTTTAAATTTTGGTTAAAAAGGTATTGGCTGGTATTTTATAAAAAAAAATTGTTTTAA
390278 TTTTTTTAATTTTTGAATTCGTGTTATATGTAAAAAATTAATTTTGTGTTATATGTAAAAAAAAA
66 TTTTTTTAATTTTTGAATTCGTGTTATATGTAAAAAATTAATTTTGTGTTATATGTAAAAAAAAA
390343 TATTTTTATTGAGATGGAAAAGTTAATATCTATTAATTTTGTTGACTGCATGTTACCTCAATGAT
131 TATTTTTATTGAGATGGAAAAGTTAATATCTATTAATTTTGTTGACTGCATGTTACCTCAATGAT
390408 TTAAAAAATTTTAAAAATATAAAAATTTCAAAAATGTTCAAAAATAAAAATTATCAGAAAGATAA
196 TTAAAAAATTTTAAAAATATAAAAATTTCAAAAATGTTCAAAAATAAAAATTATCAGAAAGATAA
390473 ATAAATTCAAATTATTAAAAAGCATAAGTTATTAGGAATTCTAGAATTTATTTAATAGTAAAAAT
261 ATAAATTCAAATTATTAAAAAGCATAAGTTATTAGGAATTCTAGAATTTATTTAATAGTAAAAAT
390538 CATTCTATAATATTTAAATTTTTTTCATAAAGTTGTAATTAATTGTTGATGTGGTATACATGTGA
326 CATTCTATAATATTTAAATTTTTTTCATAAAGTTGTAATTAATTGTTGATGTGGTATACATGTGA
390603 ACTGTTATGTTAGTAAAGTTAATTTTTTTTTATTTCAAGATGTTTTGACAAAAATATTAGTTTAA
391 ACTGTTATGTTAGTAAAGTTAATTTTTTTTTATTTCAAGATGTTTTGACAAAAATATTAGTTTAA
390668 GAGTTAAAAAAGACAAAAAAATTAAATGGAAAATTAAAATAAATTTTTTTCAGAAGTTTAAGAGT
456 GAGTTAAAAAAGACAAAAAAATTAAATGGAAAATTAAAATAAATTTTTTTCAGAAGTTTAAGAGT
390733 TAAATAAATTAGTATGCCAAAATACTAATGGCGTTAAAAAAAGTGGCACCCATCAATGAAAACGT
521 TAAATAAATTAGTATGCCAAAATACTAATGGCGTTAAAAAAAGTGGCACCCATCAATGAAAACGT
390798 ATCTTGTGGTATTCATTTGCACAAAGTAATTAATAACGTATCAGTAATTAATGACATGATATTTA
586 ATCTTGTGGTATTCATTTGCACAAAGTAATTAATAACGTATCAGTAATTAATGACATGATATTTA
390863 TTAAAGAATTTTAAAATTTAAATAAAATATAAATGTTTAAAAGATCTATTAAATTAAAAAAGAAT
651 TTAAAGAATTTTAAAATTTAAATAAAATATAAATGTTTAAAAGATCTATTAAATTAAAAAAGAAT
390928 AAAAGAAATTTACAGTATATAAATTATGTAAAAGGCACAAAACATTATATAAAATATAAAAATTC
716 AAAAGAAATTTACAGTATATAAATTATGTAAAAGGCACAAAACATTATATAAAATATAAAAATTC
*
390993 AGAACTCTAAAATATAAAAATATTTTA
781 AGAACTCTAAAATATAAAAATATATTA
391020 ACTTTTATTTTAAATTTTGGTTAAAAAGGTATTGGCTGGTATTTTATAAAAAAAAATTGTTTTAA
1 ACTTTTATTTTAAATTTTGGTTAAAAAGGTATTGGCTGGTATTTTATAAAAAAAAATTGTTTTAA
391085 TTTTTTTAATTTTTGAATTCGTGTTATATGTAAAAAATTAATTTTGTGTTATATGTAAAAAAAAA
66 TTTTTTTAATTTTTGAATTCGTGTTATATGTAAAAAATTAATTTTGTGTTATATGTAAAAAAAAA
391150 TATTTTTATTGAGATGGAAAAGTTAATATCTATTAATTTTGTTGACTGCATGTTACCTCAATGAT
131 TATTTTTATTGAGATGGAAAAGTTAATATCTATTAATTTTGTTGACTGCATGTTACCTCAATGAT
391215 TTAAAAAATTTTAAAAATATAAAAATTTCAAAAATGTTCAAAAATAAAAATTATCAGAAAGATAA
196 TTAAAAAATTTTAAAAATATAAAAATTTCAAAAATGTTCAAAAATAAAAATTATCAGAAAGATAA
391280 ATAAATTCAAATTATTAAAAAGCATAAGTTATTAGGAATTCTAGAATTTATTTAATAGTAAAAAT
261 ATAAATTCAAATTATTAAAAAGCATAAGTTATTAGGAATTCTAGAATTTATTTAATAGTAAAAAT
391345 CATTCTATAATATTTAAATTTTTTTCATAAAGTTGTAATTAATTGTTGATGTGGTATACATGTGA
326 CATTCTATAATATTTAAATTTTTTTCATAAAGTTGTAATTAATTGTTGATGTGGTATACATGTGA
391410 ACTGTTATGTTAGTAAAGTTAATTTTTTTTTATTTCAAGATGTTTTGACAAAAATATTAGTTTAA
391 ACTGTTATGTTAGTAAAGTTAATTTTTTTTTATTTCAAGATGTTTTGACAAAAATATTAGTTTAA
391475 GAGTTAAAAAAGACAAAAAAATTAAATGGAAAATTAAAATAAATTTTTTTCAGAAGTTTAAGAGT
456 GAGTTAAAAAAGACAAAAAAATTAAATGGAAAATTAAAATAAATTTTTTTCAGAAGTTTAAGAGT
391540 TAAATAAATTAGTATGCCAAAATACTAATGGCGTTAAAAAAAGTGGCACCCATCAATGAAAACGT
521 TAAATAAATTAGTATGCCAAAATACTAATGGCGTTAAAAAAAGTGGCACCCATCAATGAAAACGT
391605 ATCTTGTGGTATTCATTTGCACAAAGTAATTAATAACGTATCAGTAATTAATGACATGATATTTA
586 ATCTTGTGGTATTCATTTGCACAAAGTAATTAATAACGTATCAGTAATTAATGACATGATATTTA
391670 TTAAAGAATTTTAAAATTTAAATAAAATATAAATGTTTAAAAGATCTATTAAATTAAAAAAGAAT
651 TTAAAGAATTTTAAAATTTAAATAAAATATAAATGTTTAAAAGATCTATTAAATTAAAAAAGAAT
391735 AAAAGAAATTTACAGTATATAAATTATGTAAAAGGCACAAAACATTATATAAAATATAAAAATTC
716 AAAAGAAATTTACAGTATATAAATTATGTAAAAGGCACAAAACATTATATAAAATATAAAAATTC
391800 AGAACTCTAAAATATAAAAATATATTA
781 AGAACTCTAAAATATAAAAATATATTA
391827 A
1 A
391828 ATTCATAAAA
Statistics
Matches: 807, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
807 807 1.00
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (807 bp):
ACTTTTATTTTAAATTTTGGTTAAAAAGGTATTGGCTGGTATTTTATAAAAAAAAATTGTTTTAA
TTTTTTTAATTTTTGAATTCGTGTTATATGTAAAAAATTAATTTTGTGTTATATGTAAAAAAAAA
TATTTTTATTGAGATGGAAAAGTTAATATCTATTAATTTTGTTGACTGCATGTTACCTCAATGAT
TTAAAAAATTTTAAAAATATAAAAATTTCAAAAATGTTCAAAAATAAAAATTATCAGAAAGATAA
ATAAATTCAAATTATTAAAAAGCATAAGTTATTAGGAATTCTAGAATTTATTTAATAGTAAAAAT
CATTCTATAATATTTAAATTTTTTTCATAAAGTTGTAATTAATTGTTGATGTGGTATACATGTGA
ACTGTTATGTTAGTAAAGTTAATTTTTTTTTATTTCAAGATGTTTTGACAAAAATATTAGTTTAA
GAGTTAAAAAAGACAAAAAAATTAAATGGAAAATTAAAATAAATTTTTTTCAGAAGTTTAAGAGT
TAAATAAATTAGTATGCCAAAATACTAATGGCGTTAAAAAAAGTGGCACCCATCAATGAAAACGT
ATCTTGTGGTATTCATTTGCACAAAGTAATTAATAACGTATCAGTAATTAATGACATGATATTTA
TTAAAGAATTTTAAAATTTAAATAAAATATAAATGTTTAAAAGATCTATTAAATTAAAAAAGAAT
AAAAGAAATTTACAGTATATAAATTATGTAAAAGGCACAAAACATTATATAAAATATAAAAATTC
AGAACTCTAAAATATAAAAATATATTA
Found at i:392909 original size:19 final size:18
Alignment explanation
Indices: 392870--392913 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
392860 TAAAAACAAA
*
392870 TTTATAGAAATAAAATGTT
1 TTTATAAAAATAAAA-GTT
392889 TTTATAAAAATAAGAA-TT
1 TTTATAAAAATAA-AAGTT
392907 TTTATAA
1 TTTATAA
392914 TTTTATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 12 0.52
20 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (18 bp):
TTTATAAAAATAAAAGTT
Found at i:395033 original size:4 final size:4
Alignment explanation
Indices: 395024--395064 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
395014 AGAAGAACCC
*
395024 CATA CATA CATA CGTA CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA C
395065 CTTCTCTTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.46, C:0.27, G:0.02, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:395795 original size:32 final size:32
Alignment explanation
Indices: 395745--395808 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
395735 CCTAAGTTAT
*
395745 TTGAGTTCGGGTGCGAGTATTGAATATGTATA
1 TTGAGTTCGGGTGCGAGTATTGAAAATGTATA
** *
395777 TTGAGTTTTGGTGTGAGTATTGAAAATGTATA
1 TTGAGTTCGGGTGCGAGTATTGAAAATGTATA
395809 CGTGTTTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.27, C:0.03, G:0.30, T:0.41
Consensus pattern (32 bp):
TTGAGTTCGGGTGCGAGTATTGAAAATGTATA
Done.