Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3239

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 466

Length: 778
ACGTcount: A:0.18, C:0.28, G:0.20, T:0.33


Found at i:164 original size:88 final size:88

Alignment explanation


    Indices: 64--689  Score: 1225
    Period size: 88  Copynumber: 7.1  Consensus size: 88

         54 TACTCTACTG

                               *   *                                         
         64 CTGCTTAGGGTGATAGGACAAATGGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC
          1 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC

                                   
        129 CCGGTTTTCCCTCTGCTCCACTA
         66 CCGGTTTTCCCTCTGCTCCACTA

                                                                             
        152 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC
          1 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC

                                   
        217 CCGGTTTTCCCTCTGCTCCACTA
         66 CCGGTTTTCCCTCTGCTCCACTA

                                                                             
        240 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC
          1 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC

                                   
        305 CCGGTTTTCCCTCTGCTCCACTA
         66 CCGGTTTTCCCTCTGCTCCACTA

                                                                             
        328 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC
          1 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC

                                   
        393 CCGGTTTTCCCTCTGCTCCACTA
         66 CCGGTTTTCCCTCTGCTCCACTA

                                                                             
        416 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC
          1 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC

                                   
        481 CCGGTTTTCCCTCTGCTCCACTA
         66 CCGGTTTTCCCTCTGCTCCACTA

                                                                             
        504 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC
          1 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC

                                   
        569 CCGGTTTTCCCTCTGCTCCACTA
         66 CCGGTTTTCCCTCTGCTCCACTA

                                                                             
        592 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC
          1 CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC

                                   
        657 CCGGTTTTCCCTCTGCTCCACTA
         66 CCGGTTTTCCCTCTGCTCCACTA

               *      
        680 CTGATTAGGG
          1 CTGCTTAGGG

        690 AGACAGAATC


Statistics
Matches: 535,  Mismatches: 3, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  88  535  1.00

ACGTcount: A:0.16, C:0.29, G:0.21, T:0.34


Consensus pattern (88 bp):   
CTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCCCTGTTTTGGGCAGCTACGCTTC
CCGGTTTTCCCTCTGCTCCACTA

Done.