Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3872

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 381

Length: 635
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30


Found at i:287 original size:23 final size:23

Alignment explanation


    Indices: 249--308  Score: 84
    Period size: 23  Copynumber: 2.6  Consensus size: 23

        239 TTCTAGAATT

                  *                 
        249 GGGGGATTTTTGGGGGAAAATTCG
          1 GGGGGAATTTT-GGGGAAAATTCG

                            *    * 
        273 GGGGGAATTTTGGGGATAATTTG
          1 GGGGGAATTTTGGGGAAAATTCG

                         
        296 GGGGGAATTTTGG
          1 GGGGGAATTTTGG

        309 CTAAGTGTTG


Statistics
Matches: 33,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  23   23  0.70
  24   10  0.30

ACGTcount: A:0.20, C:0.02, G:0.47, T:0.32


Consensus pattern (23 bp):   
GGGGGAATTTTGGGGAAAATTCG

Done.