Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1070

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2971
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33


Found at i:763 original size:132 final size:132

Alignment explanation


    Indices: 574--941  Score: 601
    Period size: 132  Copynumber: 2.8  Consensus size: 132

        564 GAGATAGGAA

                          *    *         *               **                  
        574 TACTGGCTTCAATGGACTCTACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCC
          1 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCC

                                                                             
        639 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCTATTCCGCTGCTGTCCAGGGAAGTAGA
         66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCTATTCCGCTGCTGTCCAGGGAAGTAGA

              
        704 AT
        131 AT

                                   *        *                             *  
        706 TACTGGCTTCAATGTACTCCACTATAACCACATGGAGGTAAAATCTGCCATCTTTGATCTGCCCC
          1 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCC

                   *  *                         *                *           
        771 ACTACTGTTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCTAGGGAAGTAGA
         66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCTATTCCGCTGCTGTCCAGGGAAGTAGA

              
        836 AT
        131 AT

                                                                * *          
        838 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCATCGATCTGCTCC
          1 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCC

                  *                                
        903 ACTACTACTTAGGGAGACAAGATCTGAAATCTTCAACCT
         66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCT

        942 GCTCCACTGT


Statistics
Matches: 215,  Mismatches: 21, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
 132  215  1.00

ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28


Consensus pattern (132 bp):   
TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCC
ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCTATTCCGCTGCTGTCCAGGGAAGTAGA
AT

Done.