Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold333
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1398653
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.32
Warning! 76431 characters in sequence are not A, C, G, or T
File 3 of 5
Found at i:701875 original size:42 final size:43
Alignment explanation
Indices: 701814--701898 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 43
701804 TGCACCTTTT
*
701814 TTTTTTTTTTTTTGAAAAATAAAAAAAAACCTTTGGTGAAAAA
1 TTTTTTTTTTGTTGAAAAATAAAAAAAAACCTTTGGTGAAAAA
*
701857 TTTTTTTTTTGTTG-AAAATAAAAACAAACCTTTGGTGAAAAA
1 TTTTTTTTTTGTTGAAAAATAAAAAAAAACCTTTGGTGAAAAA
701899 GAAAAGAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 27 0.68
43 13 0.32
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.41
Consensus pattern (43 bp):
TTTTTTTTTTGTTGAAAAATAAAAAAAAACCTTTGGTGAAAAA
Found at i:710063 original size:57 final size:54
Alignment explanation
Indices: 709952--710059 Score: 141
Period size: 57 Copynumber: 2.0 Consensus size: 54
709942 CCCCCTTACA
709952 TCCCTCTCTCTCTTCCCCACCATCCCTCCCCTTACTCTGATTCTCTCTCCCTCCC
1 TCCCTCTCTCTCTTCCCCACCATCCCT-CCCTTACTCTGATTCTCTCTCCCTCCC
*
710007 TCCCTCTCCCTCTCTTCCCCACCATCCCT-TCTTGCACTCTGATTCT-T-TCCCTC
1 TCCCTCT--CTCTCTTCCCCACCATCCCTCCCTT--ACTCTGATTCTCTCTCCCTC
710060 TCCCCCATCG
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
55 16 0.33
56 1 0.02
57 31 0.65
ACGTcount: A:0.07, C:0.54, G:0.03, T:0.36
Consensus pattern (54 bp):
TCCCTCTCTCTCTTCCCCACCATCCCTCCCTTACTCTGATTCTCTCTCCCTCCC
Found at i:713153 original size:27 final size:27
Alignment explanation
Indices: 713115--713169 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
713105 GTTCAACGGG
713115 TATGAAAAGGGAAGCAACGGTAAGTGT
1 TATGAAAAGGGAAGCAACGGTAAGTGT
*
713142 TATGAAAAGGGAAGGAACGGTAAGTGT
1 TATGAAAAGGGAAGCAACGGTAAGTGT
713169 T
1 T
713170 CCAATGGCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.05, G:0.35, T:0.20
Consensus pattern (27 bp):
TATGAAAAGGGAAGCAACGGTAAGTGT
Found at i:713924 original size:13 final size:13
Alignment explanation
Indices: 713906--713933 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
713896 CATATTAGTC
713906 GTATAGATATTTG
1 GTATAGATATTTG
713919 GTATAGATATTTG
1 GTATAGATATTTG
713932 GT
1 GT
713934 CATTTTATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (13 bp):
GTATAGATATTTG
Found at i:715376 original size:13 final size:13
Alignment explanation
Indices: 715358--715384 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
715348 GATCATTGAT
715358 CTGCAACAACTCG
1 CTGCAACAACTCG
715371 CTGCAACAACTCG
1 CTGCAACAACTCG
715384 C
1 C
715385 ATCAGCTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.41, G:0.15, T:0.15
Consensus pattern (13 bp):
CTGCAACAACTCG
Found at i:715659 original size:27 final size:27
Alignment explanation
Indices: 715628--715789 Score: 150
Period size: 27 Copynumber: 6.0 Consensus size: 27
715618 TACCGAAATA
*
715628 CCCCTATAGGATAAAATGA-CAGTAATG
1 CCCCTATAGGGTAAAATGATCA-TAATG
* * *
715655 CCCCTATAAGGTAAAACGA-CTATAATAC
1 CCCCTATAGGGTAAAATGATC-ATAAT-G
* *
715683 CCCCGA-AGGGTAAAATGACCATAATG
1 CCCCTATAGGGTAAAATGATCATAATG
* * * *
715709 CCCTTGTAGAGTAAAACGATCATAATG
1 CCCCTATAGGGTAAAATGATCATAATG
* * *
715736 CCCCTGTAGGGTAAAATTATCGTAATG
1 CCCCTATAGGGTAAAATGATCATAATG
*
715763 CCCCTGTAGGGTAAAATGATCATAATG
1 CCCCTATAGGGTAAAATGATCATAATG
715790 TCATGGTGGG
Statistics
Matches: 110, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.03
27 100 0.91
28 7 0.06
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
CCCCTATAGGGTAAAATGATCATAATG
Found at i:715789 original size:54 final size:54
Alignment explanation
Indices: 715639--715789 Score: 178
Period size: 54 Copynumber: 2.8 Consensus size: 54
715629 CCCTATAGGA
* * * *
715639 TAAAATGACAGTAATGCCCCTATAAGGTAAAACGA-CTATAATACCCCCGAAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAACGATC-ATAATGCCCCCGAAGGG
* * * * *
715693 TAAAATGACCATAATGCCCTTGTAGAGTAAAACGATCATAATGCCCCTGTAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAACGATCATAATGCCCCCGAAGGG
* * *
715747 TAAAATTATCGTAATGCCCCTGTAGGGTAAAATGATCATAATG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAACGATCATAATG
715790 TCATGGTGGG
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
54 80 0.99
55 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (54 bp):
TAAAATGACCGTAATGCCCCTGTAGGGTAAAACGATCATAATGCCCCCGAAGGG
Found at i:715989 original size:27 final size:27
Alignment explanation
Indices: 715951--716015 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
715941 ATGGAGGAAG
715951 TACTG-TACTGGTGGCTCT-GCCACA-A
1 TACTGTTACTGGTGGCT-TGGCCACATA
715976 TCACTGTTACTGGTGGCTTGGCCACATA
1 T-ACTGTTACTGGTGGCTTGGCCACATA
*
716004 TACTATTACTGG
1 TACTGTTACTGG
716016 CAATGTTGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
25 1 0.03
26 5 0.14
27 27 0.77
28 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTGGCCACATA
Found at i:716100 original size:32 final size:32
Alignment explanation
Indices: 716059--716293 Score: 178
Period size: 32 Copynumber: 7.4 Consensus size: 32
716049 GCTGCGATAC
*
716059 TACTGATGGCTTTGTGCCGGTCATAGTA-TCGT
1 TACTGATGGCTTTGTGCCGATCATAGTACT-GT
* *
716091 TACTGATGGCTTTGTGTCGATCATATTACTGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* * * *
716123 TACCGATGGCTGTGTGCTGATCAT-TTCACTGT
1 TACTGATGGCTTTGTGCCGATCATAGT-ACTGT
* * ** *
716155 TACAGATGGCTGTGTGCCGATCATAACACTGC
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* *
716187 TACTGATGGCTTTGTGTCGATCAT-GTTACCGT
1 TACTGATGGCTTTGTGCCGATCATAG-TACTGT
*
716219 TACTGATGG-TTGTGTGTCGATCATA-TCACTGCT
1 TACTGATGGCTT-TGTGCCGATCATAGT-ACTG-T
* * * * *
716252 T-TTGATGGCTTTATGCCAATCACATTACTG-
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
*
716282 TACTTATGGCTT
1 TACTGATGGCTT
716294 GTAGCCATTC
Statistics
Matches: 165, Mismatches: 27, Indels: 23
0.77 0.13 0.11
Matches are distributed among these distances:
30 1 0.01
31 13 0.08
32 145 0.88
33 6 0.04
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATAGTACTGT
Found at i:716258 original size:64 final size:63
Alignment explanation
Indices: 716061--716263 Score: 207
Period size: 64 Copynumber: 3.2 Consensus size: 63
716051 TGCGATACTA
* * *
716061 CTGATGGCTTTGTGCCGGTCATAG-TATCGTTACTGATGGCTT-TGTGTCGATCATATTACTG-T
1 CTGATGGCTTTGTG-CGATCAT-GTTACCGTTACTGATGG-TTGTGTGTCGATCATATCACTGCT
716123 T
63 T
* * * * * * *
716124 ACCGATGGCTGTGTGCTGATCAT-TTCACTGTTACAGATGGCTGTGTGCCGATCATAACACTGCT
1 -CTGATGGCTTTGTGC-GATCATGTT-ACCGTTACTGATGGTTGTGTGTCGATCATATCACTGCT
*
716188 A
63 T
716189 CTGATGGCTTTGTGTCGATCATGTTACCGTTACTGATGGTTGTGTGTCGATCATATCACTGCTT
1 CTGATGGCTTTGTG-CGATCATGTTACCGTTACTGATGGTTGTGTGTCGATCATATCACTGCTT
*
716253 TTGATGGCTTT
1 CTGATGGCTTT
716264 ATGCCAATCA
Statistics
Matches: 112, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
63 3 0.03
64 105 0.94
65 4 0.04
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.38
Consensus pattern (63 bp):
CTGATGGCTTTGTGCGATCATGTTACCGTTACTGATGGTTGTGTGTCGATCATATCACTGCTT
Found at i:718560 original size:146 final size:146
Alignment explanation
Indices: 718296--718589 Score: 525
Period size: 146 Copynumber: 2.0 Consensus size: 146
718286 ATATCATTGA
* *
718296 GATGTTTCATAAATATGTGCATACATGATTTAATGTATTCAGCCATGTAGACTATATGTATATGT
1 GATGTTTCATAAATAGGTGCATACATGATCTAATGTATTCAGCCATGTAGACTATATGTATATGT
* *
718361 GAGACATTATACTATGAATCTTGGAGTTAAGTATACAATTAAATGTATGTATGGATTTTATGATT
66 GAGACATTATACTATGAATCTTGGACTTAAGTATACAATTAAATGTATGTATGGATTTTACGATT
718426 AATTAGATTAGACGTT
131 AATTAGATTAGACGTT
* *
718442 GATGTTTCGTAAATAGGTGCATACATGATCTAATGTATTCGGCCATGTAGACTATATGTATATGT
1 GATGTTTCATAAATAGGTGCATACATGATCTAATGTATTCAGCCATGTAGACTATATGTATATGT
*
718507 GAGCCATTATACTATGAATCTTGGACTTAAGTATACAATTAAATGTATGTATGGATTTTACGATT
66 GAGACATTATACTATGAATCTTGGACTTAAGTATACAATTAAATGTATGTATGGATTTTACGATT
718572 AATTAGATTAGACGTT
131 AATTAGATTAGACGTT
718588 GA
1 GA
718590 ATAATAAAAT
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
146 141 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (146 bp):
GATGTTTCATAAATAGGTGCATACATGATCTAATGTATTCAGCCATGTAGACTATATGTATATGT
GAGACATTATACTATGAATCTTGGACTTAAGTATACAATTAAATGTATGTATGGATTTTACGATT
AATTAGATTAGACGTT
Found at i:729186 original size:22 final size:21
Alignment explanation
Indices: 729137--729213 Score: 68
Period size: 22 Copynumber: 3.6 Consensus size: 21
729127 CCCCATATTT
** *
729137 TTAGGGTTTTAATT-ATTTAA
1 TTAGGGTTTTGGTTAATTAAA
*
729157 TTATGGTTTGTGGTTAATTAAA
1 TTAGGGTTT-TGGTTAATTAAA
*
729179 TTAGGGTTTAAT-GTTTATTAAA
1 TTAGGGTTT--TGGTTAATTAAA
729201 TTAGGGTTTTGGT
1 TTAGGGTTTTGGT
729214 GGTTTTTTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
20 9 0.20
21 5 0.11
22 31 0.67
23 1 0.02
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (21 bp):
TTAGGGTTTTGGTTAATTAAA
Found at i:735704 original size:139 final size:139
Alignment explanation
Indices: 735454--735727 Score: 467
Period size: 139 Copynumber: 2.0 Consensus size: 139
735444 TGTTGATGCG
* * *
735454 TTTTAATTTTAATCAGCGTACAGCCATGTCTATGAGTATTTACCCATGGGAAATGGGGAAAGCAT
1 TTTTAATTTTAACCAGCGTACAACCATGTCTATGAGTATTTACCCATGGGAAATCGGGAAAGCAT
735519 CTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTTGCGCC
66 CTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTTGCGCC
735584 TTTTCGTCA
131 TTTTCGTCA
* * *
735593 TTTTATTTTTAACCAGTGTACAACCATGTCTATGTGTATTTACCCATGGGAAATCGGGAAAGCAT
1 TTTTAATTTTAACCAGCGTACAACCATGTCTATGAGTATTTACCCATGGGAAATCGGGAAAGCAT
* * *
735658 CTTGTTTCTGTGCATGCATGTTAGTGATGTGTTGAATGAATGCTACAATTTTCCAAAGTTGCGCC
66 CTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTTGCGCC
735723 TTTTC
131 TTTTC
735728 TTCTTCATTT
Statistics
Matches: 126, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
139 126 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (139 bp):
TTTTAATTTTAACCAGCGTACAACCATGTCTATGAGTATTTACCCATGGGAAATCGGGAAAGCAT
CTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTTGCGCC
TTTTCGTCA
Found at i:737298 original size:16 final size:16
Alignment explanation
Indices: 737277--737307 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
737267 TTGAAAGAGT
737277 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
737293 TTTCAAATTTATATG
1 TTTCAAATATATATG
737308 CTTTGACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:740377 original size:14 final size:14
Alignment explanation
Indices: 740355--740384 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
740345 AACATAATAG
740355 ATTAATAAATATTT
1 ATTAATAAATATTT
*
740369 ATTATTAAATATTT
1 ATTAATAAATATTT
740383 AT
1 AT
740385 AAATTGCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATTAATAAATATTT
Found at i:760954 original size:15 final size:16
Alignment explanation
Indices: 760936--760970 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
760926 ATAAAAACAA
760936 TTATATATTATTT-AT
1 TTATATATTATTTAAT
*
760951 TTATTTATTATTTAAT
1 TTATATATTATTTAAT
760967 TTAT
1 TTAT
760971 TCATTTCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTATATATTATTTAAT
Found at i:761082 original size:22 final size:21
Alignment explanation
Indices: 761027--761082 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 21
761017 GAAATATTAC
761027 AAAATTAAATATACTTTTCATA
1 AAAATTAAATATAC-TTTCATA
* * *
761049 AAAAATATATATGA-TTTCAGTT
1 AAAATTAAATAT-ACTTTCA-TA
761071 AAAATTAAATAT
1 AAAATTAAATAT
761083 TTAAATTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 5 0.19
22 21 0.78
23 1 0.04
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (21 bp):
AAAATTAAATATACTTTCATA
Found at i:763129 original size:23 final size:23
Alignment explanation
Indices: 763099--763152 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
763089 ATTTTTTGGG
* *
763099 TTTTTTGTTTAATTTCTTTGAAT
1 TTTTTTGTTAAATTTCTTTAAAT
763122 TTTTTTGTTAAATTTCTTTAAAT
1 TTTTTTGTTAAATTTCTTTAAAT
763145 TCTTTTTG
1 T-TTTTTG
763153 ATTTTTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 22 0.79
24 6 0.21
ACGTcount: A:0.19, C:0.06, G:0.07, T:0.69
Consensus pattern (23 bp):
TTTTTTGTTAAATTTCTTTAAAT
Found at i:776242 original size:42 final size:42
Alignment explanation
Indices: 776183--776350 Score: 336
Period size: 42 Copynumber: 4.0 Consensus size: 42
776173 ATGTTTCAAG
776183 AAGAATTGTTGTGTTGGAAGTTTATTTGTTGTTGTTCAGGCT
1 AAGAATTGTTGTGTTGGAAGTTTATTTGTTGTTGTTCAGGCT
776225 AAGAATTGTTGTGTTGGAAGTTTATTTGTTGTTGTTCAGGCT
1 AAGAATTGTTGTGTTGGAAGTTTATTTGTTGTTGTTCAGGCT
776267 AAGAATTGTTGTGTTGGAAGTTTATTTGTTGTTGTTCAGGCT
1 AAGAATTGTTGTGTTGGAAGTTTATTTGTTGTTGTTCAGGCT
776309 AAGAATTGTTGTGTTGGAAGTTTATTTGTTGTTGTTCAGGCT
1 AAGAATTGTTGTGTTGGAAGTTTATTTGTTGTTGTTCAGGCT
776351 TCCGTCTGTC
Statistics
Matches: 126, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 126 1.00
ACGTcount: A:0.19, C:0.05, G:0.29, T:0.48
Consensus pattern (42 bp):
AAGAATTGTTGTGTTGGAAGTTTATTTGTTGTTGTTCAGGCT
Found at i:784337 original size:32 final size:33
Alignment explanation
Indices: 784266--784339 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 33
784256 AGACTAACCC
784266 GAAAATA-AAGCAAATAAAGAAGAGATTGCAAA
1 GAAAATAGAAGCAAATAAAGAAGAGATTGCAAA
*
784298 GAGAAATAGAAG-AAATTAAA-AGAGAGATTG-AGA
1 GA-AAATAGAAGCAAA-TAAAGA-AGAGATTGCAAA
784331 GAAAATAGA
1 GAAAATAGA
784340 GAGAGGGAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
32 9 0.24
33 13 0.35
34 15 0.41
ACGTcount: A:0.61, C:0.03, G:0.23, T:0.14
Consensus pattern (33 bp):
GAAAATAGAAGCAAATAAAGAAGAGATTGCAAA
Found at i:794713 original size:21 final size:22
Alignment explanation
Indices: 794673--794727 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
794663 TTTCCCCCCA
*
794673 TTGCATGTGGCTATACAA-TTGT
1 TTGCA-GTGGCTATACAATTTAT
**
794695 TTGCAGTGGCTATGTAATTTAT
1 TTGCAGTGGCTATACAATTTAT
*
794717 TTACAGTGGCT
1 TTGCAGTGGCT
794728 CCATCTACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.42
Consensus pattern (22 bp):
TTGCAGTGGCTATACAATTTAT
Found at i:795526 original size:18 final size:17
Alignment explanation
Indices: 795498--795532 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
795488 AATTATAAGA
*
795498 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
795515 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
795533 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:795682 original size:18 final size:17
Alignment explanation
Indices: 795654--795688 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
795644 AATTATAAGA
*
795654 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
795671 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
795689 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:795762 original size:156 final size:156
Alignment explanation
Indices: 795478--800949 Score: 10917
Period size: 156 Copynumber: 35.1 Consensus size: 156
795468 ATGCAACTGT
795478 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
795543 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
795608 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
795634 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
795699 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
795764 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
795790 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
795855 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
795920 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
795946 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
796011 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
796076 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
796102 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
796167 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
796232 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
796258 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
796323 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
796388 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
796414 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
796479 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
796544 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
796570 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
796635 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
796700 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
796726 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
796791 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
796856 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
796882 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
796947 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
797012 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
797038 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
797103 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
797168 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
797194 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
797259 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
797324 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
797350 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
797415 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
797480 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
797506 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
797571 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
797636 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
797662 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
797727 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
797792 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
797818 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
797883 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
797948 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
797974 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
798039 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
798104 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
798130 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
798195 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
798260 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
798286 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
798351 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
798416 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
798442 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
798507 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
798572 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
798598 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
798663 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
798728 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
798754 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
798819 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
798884 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
798910 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
798975 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
799040 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
799066 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
799131 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
799196 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
799222 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
799287 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
799352 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
799378 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
799443 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
799508 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
799534 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
799599 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
799664 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
799690 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
799755 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
799820 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
799846 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
799911 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
799976 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
800002 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
800067 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
800132 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
800158 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
800223 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
800288 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
800314 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
800379 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
800444 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
800470 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
800535 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
800600 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
800626 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
800691 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
800756 ATTAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
800782 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
800847 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
*
800912 AATAACAATAATCATTTACCAAAACA
131 ATTAACAATAATCATTTACCAAAACA
* *
800938 AATTTATGCTAA
1 ATTTTCTGCTAA
800950 GGGTATTCTA
Statistics
Matches: 5313, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 5313 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (156 bp):
ATTTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
TTATGTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAAC
ATTAACAATAATCATTTACCAAAACA
Found at i:795838 original size:18 final size:17
Alignment explanation
Indices: 795810--795844 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
795800 AATTATAAGA
*
795810 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
795827 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
795845 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:795994 original size:18 final size:17
Alignment explanation
Indices: 795966--796000 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
795956 AATTATAAGA
*
795966 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
795983 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
796001 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:796150 original size:18 final size:17
Alignment explanation
Indices: 796122--796156 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
796112 AATTATAAGA
*
796122 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
796139 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
796157 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:796306 original size:18 final size:17
Alignment explanation
Indices: 796278--796312 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
796268 AATTATAAGA
*
796278 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
796295 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
796313 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:796462 original size:18 final size:17
Alignment explanation
Indices: 796434--796468 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
796424 AATTATAAGA
*
796434 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
796451 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
796469 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:796618 original size:18 final size:17
Alignment explanation
Indices: 796590--796624 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
796580 AATTATAAGA
*
796590 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
796607 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
796625 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:796774 original size:18 final size:17
Alignment explanation
Indices: 796746--796780 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
796736 AATTATAAGA
*
796746 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
796763 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
796781 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:796930 original size:18 final size:17
Alignment explanation
Indices: 796902--796936 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
796892 AATTATAAGA
*
796902 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
796919 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
796937 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:797086 original size:18 final size:17
Alignment explanation
Indices: 797058--797092 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
797048 AATTATAAGA
*
797058 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
797075 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
797093 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:797242 original size:18 final size:17
Alignment explanation
Indices: 797214--797248 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
797204 AATTATAAGA
*
797214 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
797231 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
797249 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:797398 original size:18 final size:17
Alignment explanation
Indices: 797370--797404 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
797360 AATTATAAGA
*
797370 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
797387 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
797405 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:797554 original size:18 final size:17
Alignment explanation
Indices: 797526--797560 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
797516 AATTATAAGA
*
797526 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
797543 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
797561 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:797710 original size:18 final size:17
Alignment explanation
Indices: 797682--797716 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
797672 AATTATAAGA
*
797682 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
797699 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
797717 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:797866 original size:18 final size:17
Alignment explanation
Indices: 797838--797872 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
797828 AATTATAAGA
*
797838 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
797855 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
797873 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:798022 original size:18 final size:17
Alignment explanation
Indices: 797994--798028 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
797984 AATTATAAGA
*
797994 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
798011 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
798029 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:798178 original size:18 final size:17
Alignment explanation
Indices: 798150--798184 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
798140 AATTATAAGA
*
798150 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
798167 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
798185 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:798334 original size:18 final size:17
Alignment explanation
Indices: 798306--798340 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
798296 AATTATAAGA
*
798306 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
798323 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
798341 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:798490 original size:18 final size:17
Alignment explanation
Indices: 798462--798496 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
798452 AATTATAAGA
*
798462 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
798479 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
798497 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:798646 original size:18 final size:17
Alignment explanation
Indices: 798618--798652 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
798608 AATTATAAGA
*
798618 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
798635 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
798653 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:798802 original size:18 final size:17
Alignment explanation
Indices: 798774--798808 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
798764 AATTATAAGA
*
798774 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
798791 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
798809 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:798958 original size:18 final size:17
Alignment explanation
Indices: 798930--798964 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
798920 AATTATAAGA
*
798930 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
798947 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
798965 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:799114 original size:18 final size:17
Alignment explanation
Indices: 799086--799120 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
799076 AATTATAAGA
*
799086 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
799103 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
799121 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:799270 original size:18 final size:17
Alignment explanation
Indices: 799242--799276 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
799232 AATTATAAGA
*
799242 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
799259 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
799277 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:799426 original size:18 final size:17
Alignment explanation
Indices: 799398--799432 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
799388 AATTATAAGA
*
799398 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
799415 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
799433 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:799582 original size:18 final size:17
Alignment explanation
Indices: 799554--799588 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
799544 AATTATAAGA
*
799554 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
799571 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
799589 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:799738 original size:18 final size:17
Alignment explanation
Indices: 799710--799744 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
799700 AATTATAAGA
*
799710 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
799727 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
799745 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:799894 original size:18 final size:17
Alignment explanation
Indices: 799866--799900 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
799856 AATTATAAGA
*
799866 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
799883 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
799901 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:800050 original size:18 final size:17
Alignment explanation
Indices: 800022--800056 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
800012 AATTATAAGA
*
800022 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
800039 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
800057 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:800206 original size:18 final size:17
Alignment explanation
Indices: 800178--800212 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
800168 AATTATAAGA
*
800178 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
800195 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
800213 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:800362 original size:18 final size:17
Alignment explanation
Indices: 800334--800368 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
800324 AATTATAAGA
*
800334 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
800351 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
800369 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:800518 original size:18 final size:17
Alignment explanation
Indices: 800490--800524 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
800480 AATTATAAGA
*
800490 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
800507 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
800525 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:800674 original size:18 final size:17
Alignment explanation
Indices: 800646--800680 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
800636 AATTATAAGA
*
800646 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
800663 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
800681 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:800830 original size:18 final size:17
Alignment explanation
Indices: 800802--800836 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
800792 AATTATAAGA
*
800802 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
800819 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
800837 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:802925 original size:109 final size:109
Alignment explanation
Indices: 802780--802992 Score: 390
Period size: 109 Copynumber: 2.0 Consensus size: 109
802770 GAGAAAGGTG
* *
802780 TTTTGTCCCAAAAGTATTCGGCCATAGATTTTAAGATAATTTCAAGTCTTTTTCTTGTAATTTTT
1 TTTTGTCCCAAAAGCATTCGACCATAGATTTTAAGATAATTTCAAGTCTTTTTCTTGTAATTTTT
802845 ATAGATTTAAGGTAATGGGAGCTTGATTTAACTAACCAATGTAA
66 ATAGATTTAAGGTAATGGGAGCTTGATTTAACTAACCAATGTAA
*
802889 TTTTTTCCCAAAAGCATTCGACCATAGATTTTAAGATAATTTCAAGTCTTTTTCTTGTAATTTTT
1 TTTTGTCCCAAAAGCATTCGACCATAGATTTTAAGATAATTTCAAGTCTTTTTCTTGTAATTTTT
*
802954 ATAGATTTAAGGTAATGGGAGCTTGATTTAAGTAACCAA
66 ATAGATTTAAGGTAATGGGAGCTTGATTTAACTAACCAA
802993 AATACCAATT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
109 100 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.41
Consensus pattern (109 bp):
TTTTGTCCCAAAAGCATTCGACCATAGATTTTAAGATAATTTCAAGTCTTTTTCTTGTAATTTTT
ATAGATTTAAGGTAATGGGAGCTTGATTTAACTAACCAATGTAA
Found at i:808563 original size:68 final size:68
Alignment explanation
Indices: 808467--808670 Score: 196
Period size: 68 Copynumber: 3.0 Consensus size: 68
808457 ACTTCTAGCG
* * * *
808467 AACTCTATTGG-TTGCCTTAGCCAAGCTATGATTTTACACCTTGTAACCCCATGTTTAATGTCTT
1 AACTCAATTGGATT-CCATAGCCAAGCTATGGTCTTACACCTTGTAACCCCATGTTTAATGTCTT
* *
808531 GGCG
65 GACA
* * ** ** ** * * *
808535 GACTCTATT-TTTTGTTATAGCCAAGCTATGGTCTTACATTTTGTAACCTCATATTTAATGTCCT
1 AACTCAATTGGATT-CCATAGCCAAGCTATGGTCTTACACCTTGTAACCCCATGTTTAATGTCTT
*
808599 GATA
65 GACA
* *
808603 AACTCAATTGGATTCCATAGCCGAGCTATGGTCTTACACCTTGTAACCCCATGATTAATGTCTTG
1 AACTCAATTGGATTCCATAGCCAAGCTATGGTCTTACACCTTGTAACCCCATGTTTAATGTCTTG
808668 ACA
66 ACA
808671 GACTTTATAT
Statistics
Matches: 105, Mismatches: 29, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
68 103 0.98
69 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (68 bp):
AACTCAATTGGATTCCATAGCCAAGCTATGGTCTTACACCTTGTAACCCCATGTTTAATGTCTTG
ACA
Found at i:811345 original size:2 final size:2
Alignment explanation
Indices: 811338--811366 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
811328 AATCAACTTT
811338 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
811367 ATTAGTTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:813478 original size:21 final size:21
Alignment explanation
Indices: 813452--813502 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
813442 AAGGCTCCTG
813452 ATGTGATTGCTAGTACATTCT
1 ATGTGATTGCTAGTACATTCT
813473 ATGTGATTGCTAGTACATTCT
1 ATGTGATTGCTAGTACATTCT
813494 ATGTGATTG
1 ATGTGATTG
813503 ATGTTACTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.43
Consensus pattern (21 bp):
ATGTGATTGCTAGTACATTCT
Found at i:818145 original size:2 final size:2
Alignment explanation
Indices: 818138--818166 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
818128 AAACGTGGTT
818138 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
818167 AAAGCAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:821927 original size:21 final size:20
Alignment explanation
Indices: 821882--821955 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 20
821872 TTAATTTATT
821882 AAATT-TTAATTTTTATAAC
1 AAATTATTAATTTTTATAAC
*
821901 -ATTTATTAATTTTTATATAC
1 AAATTATTAATTTTTATA-AC
* * *
821921 AAATTATTGATTTTTTTAAT
1 AAATTATTAATTTTTATAAC
821941 AATATTACTTAATTT
1 AA-ATTA-TTAATTT
821956 AATTAGAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
18 3 0.07
19 12 0.27
20 5 0.11
21 18 0.41
22 6 0.14
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.57
Consensus pattern (20 bp):
AAATTATTAATTTTTATAAC
Found at i:833989 original size:84 final size:84
Alignment explanation
Indices: 833895--834062 Score: 309
Period size: 84 Copynumber: 2.0 Consensus size: 84
833885 TATGGATTAA
* *
833895 ATTGAATACTAGAAGTACTTAATTGATTGAAATTATCTATTTAGATCAAGATAAATCACATTCGG
1 ATTGAATACTAGAAGTACTTAATTGATTGAAATTATCTATTTAGATCAAGATAAACCACATTCAG
833960 ACTTAAATCGAGGAAAAGC
66 ACTTAAATCGAGGAAAAGC
*
833979 ATTGAATACTAGAAGTACTTAATTGCTTGAAATTATCTATTTAGATCAAGATAAACCACATTCAG
1 ATTGAATACTAGAAGTACTTAATTGATTGAAATTATCTATTTAGATCAAGATAAACCACATTCAG
834044 ACTTAAATCGAGGAAAAGC
66 ACTTAAATCGAGGAAAAGC
834063 TAAATCTTCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (84 bp):
ATTGAATACTAGAAGTACTTAATTGATTGAAATTATCTATTTAGATCAAGATAAACCACATTCAG
ACTTAAATCGAGGAAAAGC
Found at i:836282 original size:16 final size:16
Alignment explanation
Indices: 836261--836310 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 16
836251 NNNNNTAACT
836261 ATATAATAAATTATTA
1 ATATAATAAATTATTA
836277 ATATAAT---TTATTA
1 ATATAATAAATTATTA
* *
836290 TTTTAATAAATTATTTA
1 ATATAATAAATTA-TTA
836307 ATAT
1 ATAT
836311 TTTTATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 11 0.42
16 10 0.38
17 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:836315 original size:29 final size:30
Alignment explanation
Indices: 836264--836329 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 30
836254 NNTAACTATA
836264 TAATAAATTATTAATATAATTTA-TTATTT
1 TAATAAATTATTAATATAATTTATTTATTT
*
836293 TAATAAATTATTTAATAT-TTTTATTTTATTT
1 TAATAAATTA-TTAATATAATTTA-TTTATTT
836324 TAATAA
1 TAATAA
836330 TAAATATCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 14 0.42
30 7 0.21
31 12 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
TAATAAATTATTAATATAATTTATTTATTT
Found at i:836341 original size:19 final size:19
Alignment explanation
Indices: 836319--836355 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
836309 ATTTTTATTT
*
836319 TATTTTAATAATAAATATC
1 TATTATAATAATAAATATC
*
836338 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
836356 ATTAACAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
TATTATAATAATAAATATC
Found at i:839089 original size:21 final size:22
Alignment explanation
Indices: 839064--839108 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
839054 TTAAAAAAAT
839064 AAAATCAAT-AAAAT-TATTTTA
1 AAAAT-AATAAAAATATATTTTA
*
839085 AAAATTATAAAAATATATTTTA
1 AAAATAATAAAAATATATTTTA
839107 AA
1 AA
839109 TATTTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 2 0.10
21 10 0.48
22 9 0.43
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAATAATAAAAATATATTTTA
Found at i:840115 original size:42 final size:42
Alignment explanation
Indices: 840049--840128 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
840039 ATGGTGATGC
* * *
840049 GAACCCACCATGTGTGAGCTCATGTAAAGATGCAAACTCAGT
1 GAACCCACCACGTGCGAGCCCATGTAAAGATGCAAACTCAGT
* *
840091 GAACCCATCACGTGCGAGCCCATGTAAGGATGCAAACT
1 GAACCCACCACGTGCGAGCCCATGTAAAGATGCAAACT
840129 ATACAAGCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.19
Consensus pattern (42 bp):
GAACCCACCACGTGCGAGCCCATGTAAAGATGCAAACTCAGT
Found at i:841591 original size:31 final size:31
Alignment explanation
Indices: 841553--841614 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
841543 ACAGATAGAC
841553 TTAGACCAATTGATACTTATCTCATTCATAT
1 TTAGACCAATTGATACTTATCTCATTCATAT
841584 TTAGACCAATTGATACTTATCTCATTCATAT
1 TTAGACCAATTGATACTTATCTCATTCATAT
841615 CTACGAATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (31 bp):
TTAGACCAATTGATACTTATCTCATTCATAT
Found at i:849112 original size:11 final size:11
Alignment explanation
Indices: 849098--849131 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
849088 ATATTTAATT
*
849098 TCAATTTTCTC
1 TCAAGTTTCTC
849109 TCAAGTTTCTC
1 TCAAGTTTCTC
*
849120 TTAAGTTTCTC
1 TCAAGTTTCTC
849131 T
1 T
849132 TAACTCCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.06, T:0.53
Consensus pattern (11 bp):
TCAAGTTTCTC
Found at i:849132 original size:11 final size:11
Alignment explanation
Indices: 849103--849134 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
849093 TAATTTCAAT
*
849103 TTTCTCTCAAG
1 TTTCTCTTAAG
849114 TTTCTCTTAAG
1 TTTCTCTTAAG
849125 TTTCTCTTAA
1 TTTCTCTTAA
849135 CTCCCTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.22, G:0.06, T:0.53
Consensus pattern (11 bp):
TTTCTCTTAAG
Found at i:849179 original size:12 final size:12
Alignment explanation
Indices: 849140--849183 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
849130 CTTAACTCCC
*
849140 TTTTTTTAAATA
1 TTTTTTAAAATA
* *
849152 ATTTTAAAAATA
1 TTTTTTAAAATA
849164 TTTTTTAAAAT-
1 TTTTTTAAAATA
849175 TTTTTTAAA
1 TTTTTTAAA
849184 CCATAAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
11 9 0.33
12 18 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTTTTAAAATA
Found at i:851066 original size:18 final size:18
Alignment explanation
Indices: 851039--851077 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
851029 CAGGTGCGTT
*
851039 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
851057 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
851075 TCC
1 TCC
851078 CTTTCCCAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:851500 original size:9 final size:9
Alignment explanation
Indices: 851486--851517 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
851476 TATTTGTACA
851486 AATATTTTG
1 AATATTTTG
851495 AATATTTTG
1 AATATTTTG
851504 AATATTTTG
1 AATATTTTG
851513 -ATATT
1 AATATT
851518 ATTTGATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.56
Consensus pattern (9 bp):
AATATTTTG
Found at i:851552 original size:25 final size:25
Alignment explanation
Indices: 851516--851563 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
851506 TATTTTGATA
851516 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
851541 TTATTTGGTGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
851564 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:851580 original size:9 final size:9
Alignment explanation
Indices: 851566--851602 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
851556 AAATAGAAAT
851566 TTTTGAATA
1 TTTTGAATA
851575 TTTTGAATA
1 TTTTGAATA
851584 TTTTGAATA
1 TTTTGAATA
851593 TTTTG-ATA
1 TTTTGAATA
851601 TT
1 TT
851603 ATTTGATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:851629 original size:85 final size:85
Alignment explanation
Indices: 851486--852288 Score: 1606
Period size: 85 Copynumber: 9.4 Consensus size: 85
851476 TATTTGTACA
851486 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
851551 TAATAAAATAGAAATTTTTG
66 TAATAAAATAGAAATTTTTG
851571 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
851636 TAATAAAATAGAAATTTTTG
66 TAATAAAATAGAAATTTTTG
851656 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
851721 TAATAAAATAGAAATTTTTG
66 TAATAAAATAGAAATTTTTG
851741 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
851806 TAATAAAATAGAAATTTTTG
66 TAATAAAATAGAAATTTTTG
851826 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
851891 TAATAAAATAGAAATTTTTG
66 TAATAAAATAGAAATTTTTG
851911 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
851976 TAATAAAATAGAAATTTTTG
66 TAATAAAATAGAAATTTTTG
851996 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
852061 TAATAAAATAGAAATTTTTG
66 TAATAAAATAGAAATTTTTG
852081 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
852146 TAATAAAATAGAAATTTTTG
66 TAATAAAATAGAAATTTTTG
852166 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
852231 TAATAAAATAGAAATTTTTG
66 TAATAAAATAGAAATTTTTG
852251 AATATTTTGAATATTTTGAATATTTTGATATTATTTGA
1 AATATTTTGAATATTTTGAATATTTTGATATTATTTGA
852289 GGTACTAATA
Statistics
Matches: 718, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 718 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (85 bp):
AATATTTTGAATATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGGTG
TAATAAAATAGAAATTTTTG
Found at i:851637 original size:25 final size:25
Alignment explanation
Indices: 851601--851648 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
851591 TATTTTGATA
851601 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
851626 TTATTTGGTGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
851649 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:851665 original size:9 final size:9
Alignment explanation
Indices: 851651--851687 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
851641 AAATAGAAAT
851651 TTTTGAATA
1 TTTTGAATA
851660 TTTTGAATA
1 TTTTGAATA
851669 TTTTGAATA
1 TTTTGAATA
851678 TTTTG-ATA
1 TTTTGAATA
851686 TT
1 TT
851688 ATTTGATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:851722 original size:25 final size:25
Alignment explanation
Indices: 851686--851733 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
851676 TATTTTGATA
851686 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
851711 TTATTTGGTGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
851734 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:851750 original size:9 final size:9
Alignment explanation
Indices: 851736--851772 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
851726 AAATAGAAAT
851736 TTTTGAATA
1 TTTTGAATA
851745 TTTTGAATA
1 TTTTGAATA
851754 TTTTGAATA
1 TTTTGAATA
851763 TTTTG-ATA
1 TTTTGAATA
851771 TT
1 TT
851773 ATTTGATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:851807 original size:25 final size:25
Alignment explanation
Indices: 851771--851818 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
851761 TATTTTGATA
851771 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
851796 TTATTTGGTGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
851819 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:851835 original size:9 final size:9
Alignment explanation
Indices: 851821--851857 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
851811 AAATAGAAAT
851821 TTTTGAATA
1 TTTTGAATA
851830 TTTTGAATA
1 TTTTGAATA
851839 TTTTGAATA
1 TTTTGAATA
851848 TTTTG-ATA
1 TTTTGAATA
851856 TT
1 TT
851858 ATTTGATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:851892 original size:25 final size:25
Alignment explanation
Indices: 851856--851903 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
851846 TATTTTGATA
851856 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
851881 TTATTTGGTGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
851904 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:851920 original size:9 final size:9
Alignment explanation
Indices: 851906--851942 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
851896 AAATAGAAAT
851906 TTTTGAATA
1 TTTTGAATA
851915 TTTTGAATA
1 TTTTGAATA
851924 TTTTGAATA
1 TTTTGAATA
851933 TTTTG-ATA
1 TTTTGAATA
851941 TT
1 TT
851943 ATTTGATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:851977 original size:25 final size:25
Alignment explanation
Indices: 851941--851988 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
851931 TATTTTGATA
851941 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
851966 TTATTTGGTGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
851989 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:852005 original size:9 final size:9
Alignment explanation
Indices: 851991--852027 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
851981 AAATAGAAAT
851991 TTTTGAATA
1 TTTTGAATA
852000 TTTTGAATA
1 TTTTGAATA
852009 TTTTGAATA
1 TTTTGAATA
852018 TTTTG-ATA
1 TTTTGAATA
852026 TT
1 TT
852028 ATTTGATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:852062 original size:25 final size:25
Alignment explanation
Indices: 852026--852073 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
852016 TATTTTGATA
852026 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
852051 TTATTTGGTGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
852074 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:852090 original size:9 final size:9
Alignment explanation
Indices: 852076--852112 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
852066 AAATAGAAAT
852076 TTTTGAATA
1 TTTTGAATA
852085 TTTTGAATA
1 TTTTGAATA
852094 TTTTGAATA
1 TTTTGAATA
852103 TTTTG-ATA
1 TTTTGAATA
852111 TT
1 TT
852113 ATTTGATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:852147 original size:25 final size:25
Alignment explanation
Indices: 852111--852158 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
852101 TATTTTGATA
852111 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
852136 TTATTTGGTGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
852159 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:852175 original size:9 final size:9
Alignment explanation
Indices: 852161--852197 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
852151 AAATAGAAAT
852161 TTTTGAATA
1 TTTTGAATA
852170 TTTTGAATA
1 TTTTGAATA
852179 TTTTGAATA
1 TTTTGAATA
852188 TTTTG-ATA
1 TTTTGAATA
852196 TT
1 TT
852198 ATTTGATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:852232 original size:25 final size:25
Alignment explanation
Indices: 852196--852243 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
852186 TATTTTGATA
852196 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
852221 TTATTTGGTGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
852244 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:852260 original size:9 final size:9
Alignment explanation
Indices: 852246--852282 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
852236 AAATAGAAAT
852246 TTTTGAATA
1 TTTTGAATA
852255 TTTTGAATA
1 TTTTGAATA
852264 TTTTGAATA
1 TTTTGAATA
852273 TTTTG-ATA
1 TTTTGAATA
852281 TT
1 TT
852283 ATTTGAGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:852318 original size:17 final size:17
Alignment explanation
Indices: 852296--852365 Score: 61
Period size: 17 Copynumber: 3.9 Consensus size: 17
852286 TGAGGTACTA
852296 ATAATTAATAATTTTAT
1 ATAATTAATAATTTTAT
*
852313 ATAATTTGATAATTTTACT
1 ATAA-TTAATAATTTTA-T
* *
852332 AATCATTAATACAATTTAT
1 -ATAATTAATA-ATTTTAT
*
852351 -CAATTAATAATTTTA
1 ATAATTAATAATTTTA
852366 CTTTCACATA
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
16 5 0.12
17 11 0.26
18 11 0.26
19 7 0.17
20 8 0.19
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (17 bp):
ATAATTAATAATTTTAT
Found at i:852478 original size:37 final size:37
Alignment explanation
Indices: 852406--852478 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
852396 TTTTGACTGG
* * *
852406 TACTAACAATTAATAATTTTATATAATTTGAAATTTT
1 TACTAACAATTAATAAATTTATACAATTTAAAATTTT
852443 TACTAACAATTAATACAATTTAT-CAA-TTAATAATTT
1 TACTAACAATTAATA-AATTTATACAATTTAA-AATTT
852479 CACAACCATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 3 0.10
37 22 0.71
38 6 0.19
ACGTcount: A:0.45, C:0.08, G:0.01, T:0.45
Consensus pattern (37 bp):
TACTAACAATTAATAAATTTATACAATTTAAAATTTT
Found at i:855806 original size:122 final size:124
Alignment explanation
Indices: 855475--855824 Score: 508
Period size: 125 Copynumber: 2.8 Consensus size: 124
855465 CCCAAACATG
*
855475 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCCTC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCCTA
* * *** *
855540 CTAGAAGTGATTTTATACTATTTGCTCAGAAACATCAAAAAAAGTTTTTTTTTCCATGAC
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAG-AAATTCTTCCATGAC
* * *
855600 TTACTGTAGCAAAAGCGTGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCCT-
* *
855665 A-TAGAAGCGATTTTATACTATTTTCTTAGAAACGTCAAAAAAA-AAATTCTTCCATGAC
65 ACTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAGAAATTCTTCCATGAC
* * * *
855723 CTACTGTGGCAAAAGCGCGTCCACTAGGGCACGA-TTTCACAAATTCTTCTTAAATAACATCCTA
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCCTA
*
855787 CTAGAAGCGATTTTATACTATTTGATCAGAAACGTCAA
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
855825 CTCGAAATTA
Statistics
Matches: 201, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
121 1 0.00
122 61 0.30
123 40 0.20
125 99 0.49
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCCTA
CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAGAAATTCTTCCATGAC
Found at i:858650 original size:38 final size:38
Alignment explanation
Indices: 858578--858651 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
858568 TCGTTTTAGT
858578 GAAATTATATTTGCCCATGGTTTTTTATCCTCTTCGAA
1 GAAATTATATTTGCCCATGGTTTTTTATCCTCTTCGAA
*
858616 GAAATTATATTTGTCCATGGTTTTTTATCCTCTTCG
1 GAAATTATATTTGCCCATGGTTTTTTATCCTCTTCG
858652 GGATTTAGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.47
Consensus pattern (38 bp):
GAAATTATATTTGCCCATGGTTTTTTATCCTCTTCGAA
Found at i:868389 original size:27 final size:27
Alignment explanation
Indices: 868359--868415 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
868349 GCCTCTAGCA
* * *
868359 ATCCATGCTTCGCCAAGCCCATTGGTG
1 ATCCATACTTCGCCAAGCCCACTAGTG
* *
868386 ATCCTTACTTTGCCAAGCCCACTAGTG
1 ATCCATACTTCGCCAAGCCCACTAGTG
868413 ATC
1 ATC
868416 ATAGTTCTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.28
Consensus pattern (27 bp):
ATCCATACTTCGCCAAGCCCACTAGTG
Found at i:868834 original size:24 final size:24
Alignment explanation
Indices: 868807--868859 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
868797 TTTTTAGAAG
* *
868807 ATTTAGTATTTATGAGTATAACAT
1 ATTTAGCATTTATGAGCATAACAT
* *
868831 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAACAT
868855 ATTTA
1 ATTTA
868860 ACTTTGATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAACAT
Found at i:868869 original size:24 final size:24
Alignment explanation
Indices: 868814--868870 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
868804 AAGATTTAGT
* * *
868814 ATTTATGAGTATAACATATTTAGC
1 ATTTATTAGCATAACATATTTAAC
*
868838 ATTTATTAGCATAATATATTTAAC
1 ATTTATTAGCATAACATATTTAAC
868862 -TTTGATTAG
1 ATTT-ATTAG
868871 AATTAGATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.46
Consensus pattern (24 bp):
ATTTATTAGCATAACATATTTAAC
Found at i:873045 original size:24 final size:24
Alignment explanation
Indices: 873011--873062 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
873001 TTTTTAGAAG
* *
873011 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
* *
873035 ATTTAGCATTTGTTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
873059 ATTT
1 ATTT
873063 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:882303 original size:27 final size:27
Alignment explanation
Indices: 882270--882524 Score: 254
Period size: 27 Copynumber: 9.5 Consensus size: 27
882260 CCCTAAAATA
** *
882270 GGTAAAATGACCAAAATACCCCTAAAG
1 GGTAAAATGACTGAAATACCCCTATAG
* ** *
882297 GGTAAAATAACT-ATTTTACCCTTAATA-
1 GGTAAAATGACTGA-AATACCCCT-ATAG
*
882324 GATGAAAATGACTGAAATA-CCCTCATAG
1 GGT-AAAATGACTGAAATACCCCT-ATAG
*
882352 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCTATAG
**
882379 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACTGAAATACCCCTATAG
*
882406 AGTAAAATGA-TCGAAATACCCC-ATAG
1 GGTAAAATGACT-GAAATACCCCTATAG
* *
882432 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCTATAG
* *
882459 GATAAAATAACTGAAATACCCCTATAG
1 GGTAAAATGACTGAAATACCCCTATAG
*
882486 GG-AAAATGACTGAAATACCTCC-ATAC
1 GGTAAAATGACTGAAATACC-CCTATAG
882512 GGTAAAATGACTG
1 GGTAAAATGACTG
882525 TTATAGCCTT
Statistics
Matches: 188, Mismatches: 29, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
26 45 0.24
27 125 0.66
28 17 0.09
29 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACTGAAATACCCCTATAG
Found at i:882451 original size:53 final size:52
Alignment explanation
Indices: 882328--882524 Score: 240
Period size: 53 Copynumber: 3.7 Consensus size: 52
882318 TTAATAGATG
*
882328 AAAATGACTGAAATA-CCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGT
1 AAAATGACCGAAATACCCCT-ATA-GGTAAAATGACTGAAATA-CCCCATAGGGT
*
882382 AAAATGACCAAAATACCCCTATAGAGTAAAATGA-TCGAAATACCCCATAGGGT
1 AAAATGACCGAAATACCCCTATAG-GTAAAATGACT-GAAATACCCCATAGGGT
* *
882435 AAAATGACCGAAATACCCCCATAGGATAAAATAACTGAAATACCCCTATAGGG-
1 AAAATGACCGAAATACCCCTATAGG-TAAAATGACTGAAATACCCC-ATAGGGT
*
882488 AAAATGACTGAAATACCTCC-ATACGGTAAAATGACTG
1 AAAATGACCGAAATACC-CCTATA-GGTAAAATGACTG
882525 TTATAGCCTT
Statistics
Matches: 128, Mismatches: 7, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
52 1 0.01
53 81 0.63
54 42 0.33
55 4 0.03
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (52 bp):
AAAATGACCGAAATACCCCTATAGGTAAAATGACTGAAATACCCCATAGGGT
Found at i:882451 original size:80 final size:80
Alignment explanation
Indices: 882270--882522 Score: 314
Period size: 80 Copynumber: 3.1 Consensus size: 80
882260 CCCTAAAATA
* * * *** *
882270 GGTAAAATGACCAAAATACCCCTAAAGGGTAAAATAACTATTTTACCCTTAATAGA-TGAAAATG
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTAAAATACCCCT-ATAGAGT-AAAATG
882334 ACTGAAATACCCTCATAG
64 ACTGAAATACCC-CATAG
* * *
882352 GGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCAAAATACCCCTATAGAGTAAAATGA-
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTAAAATACCCCTATAGAGTAAAATGAC
882416 TCGAAATACCCCATAG
66 T-GAAATACCCCATAG
* * *
882432 GGTAAAATGACCGAAATACCCCCATAGGATAAAATAACTGAAATACCCCTATAG-GGAAAATGAC
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTAAAATACCCCTATAGAGTAAAATGAC
*
882496 TGAAATACCTCCATAC
66 TGAAATACC-CCATAG
882512 GGTAAAATGAC
1 GGTAAAATGAC
882523 TGTTATAGCC
Statistics
Matches: 150, Mismatches: 17, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
79 16 0.11
80 72 0.48
81 21 0.14
82 41 0.27
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.21
Consensus pattern (80 bp):
GGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTAAAATACCCCTATAGAGTAAAATGAC
TGAAATACCCCATAG
Found at i:882765 original size:26 final size:26
Alignment explanation
Indices: 882729--882809 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 26
882719 TTTGCCACAT
* * *
882729 ATACTGTTACTGGCAACTTTACTACG
1 ATACTGATACTGGCAGCTTTACTGCG
*
882755 ATACTGATACTGGCAGCTCTACTGCG
1 ATACTGATACTGGCAGCTTTACTGCG
* *
882781 AT-GTTATTACTGGCAGCTTTACTGCG
1 ATACTGA-TACTGGCAGCTTTACTGCG
882807 ATA
1 ATA
882810 TTGGTGTGTT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTACTGCG
Found at i:882952 original size:28 final size:28
Alignment explanation
Indices: 882912--882999 Score: 158
Period size: 28 Copynumber: 3.1 Consensus size: 28
882902 TTGCACTGCG
882912 CTGTTACTGTATTGAGCTAAGGCCCACA
1 CTGTTACTGTATTGAGCTAAGGCCCACA
* *
882940 CTGTTATTGTATTGGGCTAAGGCCCACA
1 CTGTTACTGTATTGAGCTAAGGCCCACA
882968 CTGTTACTGTATTGAGCTAAGGCCCACA
1 CTGTTACTGTATTGAGCTAAGGCCCACA
882996 CTGT
1 CTGT
883000 ACTATCACTG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (28 bp):
CTGTTACTGTATTGAGCTAAGGCCCACA
Found at i:884731 original size:18 final size:19
Alignment explanation
Indices: 884708--884748 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
884698 AAAAATTTTA
884708 AAAC-TTAAAAATTTGGAG
1 AAACTTTAAAAATTTGGAG
* *
884726 AAACTTTGAAACTTTGGAG
1 AAACTTTAAAAATTTGGAG
884745 AAAC
1 AAAC
884749 AAGTTTTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.27
Consensus pattern (19 bp):
AAACTTTAAAAATTTGGAG
Found at i:891854 original size:18 final size:19
Alignment explanation
Indices: 891825--891860 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
891815 GTGAAAATTT
*
891825 TGAAATTTAGGGATTTAAG
1 TGAAATTTAGGGAGTTAAG
891844 TGAAA-TTAGGGAGTTAA
1 TGAAATTTAGGGAGTTAA
891861 ATTTAGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (19 bp):
TGAAATTTAGGGAGTTAAG
Found at i:894322 original size:9 final size:10
Alignment explanation
Indices: 894296--894321 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
894286 TGTAAATCTG
894296 TCAAAAATAA
1 TCAAAAATAA
894306 TCAAAAATAA
1 TCAAAAATAA
894316 TCAAAA
1 TCAAAA
894322 TTTATTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (10 bp):
TCAAAAATAA
Found at i:895055 original size:6 final size:6
Alignment explanation
Indices: 895044--895077 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
895034 ATGCTCTCCT
*
895044 TTTTTC TTTTTC TTTTTC TTTTT- TTCTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
895078 TTTCACGAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:895068 original size:20 final size:20
Alignment explanation
Indices: 895043--895081 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
895033 TATGCTCTCC
895043 TTTTTTCTT-TTTCTTTTTCT
1 TTTTTTCTTCTTT-TTTTTCT
895063 TTTTTTCTTCTTTTTTTTC
1 TTTTTTCTTCTTTTTTTTC
895082 ACGAGCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTTCTTCTTTTTTTTCT
Found at i:895081 original size:12 final size:11
Alignment explanation
Indices: 895043--895080 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
895033 TATGCTCTCC
895043 TTTTTTCTTTT
1 TTTTTTCTTTT
895054 TCTTTTTCTTTT
1 T-TTTTTCTTTT
*
895066 TTTCTTCTTTT
1 TTTTTTCTTTT
895077 TTTT
1 TTTT
895081 CACGAGCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:897518 original size:16 final size:16
Alignment explanation
Indices: 897497--897528 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
897487 GGTTTGATGA
897497 GTGATGAATGATGGAG
1 GTGATGAATGATGGAG
897513 GTGATGAATGATGGAG
1 GTGATGAATGATGGAG
897529 AAGGTTGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.44, T:0.25
Consensus pattern (16 bp):
GTGATGAATGATGGAG
Found at i:897902 original size:29 final size:30
Alignment explanation
Indices: 897845--897902 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
897835 TCTTTTGAAG
*
897845 ATATTTACAAAAAGAGACATCTAATTTTTA
1 ATATTTACAAAAAGAGACATCTAAATTTTA
*
897875 ATATTTATAAAAAGAGTA-A-CTAAATTTT
1 ATATTTACAAAAAGAG-ACATCTAAATTTT
897903 GAAAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.32
30 16 0.64
31 1 0.04
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (30 bp):
ATATTTACAAAAAGAGACATCTAAATTTTA
Found at i:904086 original size:20 final size:21
Alignment explanation
Indices: 904050--904090 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
904040 ATTGATTAAA
904050 CAAATTTTAATAAGAAAATGT
1 CAAATTTTAATAAGAAAATGT
904071 CAAATTTTAA-AAGAAAATGT
1 CAAATTTTAATAAGAAAATGT
904091 GTTAATGCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.32
Consensus pattern (21 bp):
CAAATTTTAATAAGAAAATGT
Found at i:906390 original size:7 final size:7
Alignment explanation
Indices: 906378--906407 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
906368 GTATATGTAT
906378 TATATAA
1 TATATAA
906385 TATATAA
1 TATATAA
906392 TATATAA
1 TATATAA
906399 TATATAA
1 TATATAA
906406 TA
1 TA
906408 AATGAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TATATAA
Found at i:907019 original size:12 final size:12
Alignment explanation
Indices: 906989--907027 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
906979 ATTAAATAGA
906989 AAGAAAAGAAAG
1 AAGAAAAGAAAG
907001 -A-AAAAGAAAG
1 AAGAAAAGAAAG
*
907011 AAGAAAAGAAGG
1 AAGAAAAGAAAG
907023 AAGAA
1 AAGAA
907028 CGCACAGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 9 0.38
11 2 0.08
12 13 0.54
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AAGAAAAGAAAG
Found at i:909146 original size:30 final size:30
Alignment explanation
Indices: 909110--909171 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
909100 ACATGGGGTA
*
909110 TGTCACACACGAGCAACACACATGGGCATG
1 TGTCACACACGAGCAACACACATGGACATG
*
909140 TGTCACACACGGGCAACACACATGGACATG
1 TGTCACACACGAGCAACACACATGGACATG
909170 TG
1 TG
909172 ACCCATATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.32, C:0.29, G:0.24, T:0.15
Consensus pattern (30 bp):
TGTCACACACGAGCAACACACATGGACATG
Found at i:912557 original size:41 final size:42
Alignment explanation
Indices: 912458--912593 Score: 150
Period size: 42 Copynumber: 3.3 Consensus size: 42
912448 GTTTGTCCGC
* * * * * *
912458 TGATGCACTTACGTGGCAATATAATTGCTTTGGA-ATATCCGA
1 TGATGCACTTACGTGCCAGTATATTTGC-TTCGATACATCTGA
* *
912500 TGATGCACTTATGTGCCAGTATATTTGCTTCGATATAT-TGA
1 TGATGCACTTACGTGCCAGTATATTTGCTTCGATACATCTGA
** *
912541 TGATGTGCTTACGTGCCAGTATATTTTCTTCGATACATCTGA
1 TGATGCACTTACGTGCCAGTATATTTGCTTCGATACATCTGA
912583 TGATGCACTTA
1 TGATGCACTTA
912594 GGTACCAACA
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
41 39 0.49
42 40 0.51
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (42 bp):
TGATGCACTTACGTGCCAGTATATTTGCTTCGATACATCTGA
Done.