Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold763

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6974
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.33

Warning! 221 characters in sequence are not A, C, G, or T


Found at i:4050 original size:37 final size:37

Alignment explanation


    Indices: 3993--4091  Score: 139
    Period size: 37  Copynumber: 2.7  Consensus size: 37

       3983 TATGATCACT

                          *                *     
       3993 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
          1 TATCACTTTGTCACTTGATCAGATAAGTGTAACCACC

                       **                       *
       4028 TATCACTTTGTTTCTTGATCAGATAAGTGTAACCACT
          1 TATCACTTTGTCACTTGATCAGATAAGTGTAACCACC

                                       
       4065 TATCACTTTGTCACTTGATCAGATAAG
          1 TATCACTTTGTCACTTGATCAGATAAG

       4092 NNNNNNNNNN


Statistics
Matches: 56,  Mismatches: 6, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  35    6  0.11
  36    4  0.07
  37   46  0.82

ACGTcount: A:0.27, C:0.22, G:0.15, T:0.35


Consensus pattern (37 bp):   
TATCACTTTGTCACTTGATCAGATAAGTGTAACCACC
Done.