Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1749

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1335
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.24

Warning! 164 characters in sequence are not A, C, G, or T


Found at i:1231 original size:6 final size:6

Alignment explanation


    Indices: 1220--1246  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       1210 TAAAATGCAA

                                           
       1220 AAATGC AAATGC AAATGC AAATGC AAA
          1 AAATGC AAATGC AAATGC AAATGC AAA

       1247 ATTTCCAACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.56, C:0.15, G:0.15, T:0.15


Consensus pattern (6 bp):   
AAATGC

Done.