Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2320

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 592

Length: 988
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.26

Warning! 157 characters in sequence are not A, C, G, or T


Found at i:743 original size:26 final size:26

Alignment explanation


    Indices: 713--764  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        703 AATAAAAGAA

                                      
        713 AACATTCAATATTTCAGTTTAATTAG
          1 AACATTCAATATTTCAGTTTAATTAG

                                      
        739 AACATTCAATATTTCAGTTTAATTAG
          1 AACATTCAATATTTCAGTTTAATTAG

        765 CATTAATTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42


Consensus pattern (26 bp):   
AACATTCAATATTTCAGTTTAATTAG
Done.