Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold751

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7391
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30


Found at i:375 original size:20 final size:20

Alignment explanation


    Indices: 344--381  Score: 60
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        334 ACTCTCTAAG

                                 
        344 AAAATAATGAAATGAAATACA
          1 AAAATAATGAAAT-AAATACA

                              
        365 AAAATAA-GAAATAAATA
          1 AAAATAATGAAATAAATA

        382 TATTGAAAAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  19    5  0.29
  20    5  0.29
  21    7  0.41

ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18


Consensus pattern (20 bp):   
AAAATAATGAAATAAATACA
Done.