Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1896

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1222
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:1028 original size:114 final size:115

Alignment explanation


    Indices: 879--1109  Score: 428
    Period size: 114  Copynumber: 2.0  Consensus size: 115

        869 GACATACAGC

                                    *                                        
        879 AAAAACCGCAAAAAAACCCCGCAATGTTCGCTCATTTTTCAAAGTTCGGCGCCCGCCAGCGCGCT
          1 AAAAACCGCAAAAAAACCCCGCAAGGTTCGCTCATTTTTCAAAGTTCGGCGCCCGCCAGCGCGCT

                                                              
        944 TAATTTTGCCCATAGGCAAAAAATGTATGAAACCTTTTTATAGGAAATTT
         66 TAATTTTGCCCATAGGCAAAAAATGTATGAAACCTTTTTATAGGAAATTT

                           *                                                 
        994 AAAAACCGC-AAAAACCCCCGCAAGGTTCGCTCATTTTTCAAAGTTCGGCGCCCGCCAGCGCGCT
          1 AAAAACCGCAAAAAAACCCCGCAAGGTTCGCTCATTTTTCAAAGTTCGGCGCCCGCCAGCGCGCT

                       *                                      
       1058 TAATTTTGCCCGTAGGCAAAAAATGTATGAAACCTTTTTATAGGAAATTT
         66 TAATTTTGCCCATAGGCAAAAAATGTATGAAACCTTTTTATAGGAAATTT

              
       1108 AA
          1 AA

       1110 CGAGCTTTAT


Statistics
Matches: 113,  Mismatches: 3, Indels: 1
        0.97            0.03        0.01

Matches are distributed among these distances:
 114  104  0.92
 115    9  0.08

ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26


Consensus pattern (115 bp):   
AAAAACCGCAAAAAAACCCCGCAAGGTTCGCTCATTTTTCAAAGTTCGGCGCCCGCCAGCGCGCT
TAATTTTGCCCATAGGCAAAAAATGTATGAAACCTTTTTATAGGAAATTT
Done.