Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2690

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 525

Length: 875
ACGTcount: A:0.15, C:0.08, G:0.15, T:0.18

Warning! 394 characters in sequence are not A, C, G, or T


Found at i:839 original size:25 final size:27

Alignment explanation


    Indices: 817--875  Score: 73
    Period size: 30  Copynumber: 2.0  Consensus size: 27

        807 TGAATTAGGT

                                         
        817 GGTTTTTAATTAAATTAAGTTAGGATTTA
          1 GGTTTTTAATTAAATTAAGTTAGG--TTA

                              *          
        846 GGGTTTTTAATTAAATTAGGTTAGGGTTA
          1 -GGTTTTTAATTAAATTAAGTTA-GGTTA

             
        875 G
          1 G


Statistics
Matches: 27,  Mismatches: 1, Indels: 4
        0.84            0.03        0.12

Matches are distributed among these distances:
  28    1  0.04
  29    3  0.11
  30   21  0.78
  31    2  0.07

ACGTcount: A:0.31, C:0.00, G:0.24, T:0.46


Consensus pattern (27 bp):   
GGTTTTTAATTAAATTAAGTTAGGTTA
Done.