Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1713

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 823

Length: 1373
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24


Found at i:1076 original size:44 final size:44

Alignment explanation


    Indices: 991--1077  Score: 120
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        981 GAAATACATT

                           *                   **       
        991 TTTGCGGCGTTTTAAGCAAAGCGCCACAAAATATAGGTCAAAAA
          1 TTTGCGGCGTTTTAAACAAAGCGCCACAAAATATAACTCAAAAA

                             *         *  *            
       1035 TTTGCGGCGTTTTAAACTAAGCGCCACTAACTATAACTCAAAA
          1 TTTGCGGCGTTTTAAACAAAGCGCCACAAAATATAACTCAAAA

       1078 TGCGGTCGTT


Statistics
Matches: 37,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  44   37  1.00

ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25


Consensus pattern (44 bp):   
TTTGCGGCGTTTTAAACAAAGCGCCACAAAATATAACTCAAAAA
Done.