Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2609

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 539

Length: 899
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38


Found at i:751 original size:19 final size:18

Alignment explanation


    Indices: 727--765  Score: 69
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        717 TCTCTTTTTC

                              
        727 TTTTTTTTTAATTCCGAA
          1 TTTTTTTTTAATTCCGAA

                         *    
        745 TTTTTTTTTAATTTCGAA
          1 TTTTTTTTTAATTCCGAA

               
        763 TTT
          1 TTT

        766 CTCTCACTTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.21, C:0.08, G:0.05, T:0.67


Consensus pattern (18 bp):   
TTTTTTTTTAATTCCGAA
Done.