Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1506

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1630
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:145 original size:21 final size:21

Alignment explanation


    Indices: 119--161  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        109 ACTCAAAAAA

                                 
        119 AGCTGTTTTTGGAACCGACCC
          1 AGCTGTTTTTGGAACCGACCC

                                 
        140 AGCTGTTTTTGGAACCGACCC
          1 AGCTGTTTTTGGAACCGACCC

             
        161 A
          1 A

        162 TTCAAAACGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28


Consensus pattern (21 bp):   
AGCTGTTTTTGGAACCGACCC
Done.