Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1497

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 984

Length: 1641
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32


Found at i:1009 original size:15 final size:15

Alignment explanation


    Indices: 989--1017  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        979 GCAGAAACAG

                           
        989 ATAAGAAAAAAAAAT
          1 ATAAGAAAAAAAAAT

                          
       1004 ATAAGAAAAAAAAA
          1 ATAAGAAAAAAAAA

       1018 AGAAAGAGGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10


Consensus pattern (15 bp):   
ATAAGAAAAAAAAAT

Found at i:1024 original size:15 final size:16

Alignment explanation


    Indices: 987--1024  Score: 53
    Period size: 15  Copynumber: 2.5  Consensus size: 16

        977 GTGCAGAAAC

                            
        987 AGATAAG-AAAAAAAA
          1 AGATAAGAAAAAAAAA

             *              
       1002 ATATAAGAAAAAAAAA
          1 AGATAAGAAAAAAAAA

                    
       1018 AGA-AAGA
          1 AGATAAGA

       1025 GGGGAGAGGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  15   10  0.50
  16   10  0.50

ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08


Consensus pattern (16 bp):   
AGATAAGAAAAAAAAA
Done.