Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4640

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 303

Length: 506
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39


Found at i:190 original size:34 final size:34

Alignment explanation


    Indices: 147--215  Score: 129
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        137 ACCATAATCT

                               *              
        147 AGTATTGTTTTTATGAATTGAATTTTAACTTGTA
          1 AGTATTGTTTTTATGAATTCAATTTTAACTTGTA

                                              
        181 AGTATTGTTTTTATGAATTCAATTTTAACTTGTA
          1 AGTATTGTTTTTATGAATTCAATTTTAACTTGTA

             
        215 A
          1 A

        216 TTTTCAATTC


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.30, C:0.04, G:0.13, T:0.52


Consensus pattern (34 bp):   
AGTATTGTTTTTATGAATTCAATTTTAACTTGTA
Done.