Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3253

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 466

Length: 777
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31


Found at i:622 original size:18 final size:18

Alignment explanation


    Indices: 579--623  Score: 54
    Period size: 18  Copynumber: 2.5  Consensus size: 18

        569 TTGACATGGT

                  *         * 
        579 TGGTGGTGAAGAAGAATG
          1 TGGTGGCGAAGAAGAAGG

              **              
        597 TGCCGGCGAAGAAGAAGG
          1 TGGTGGCGAAGAAGAAGG

                     
        615 TGGTGGCGA
          1 TGGTGGCGA

        624 TCATTGGGAT


Statistics
Matches: 21,  Mismatches: 6, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.29, C:0.09, G:0.47, T:0.16


Consensus pattern (18 bp):   
TGGTGGCGAAGAAGAAGG
Done.