Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold858

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5095
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32


Found at i:3287 original size:33 final size:33

Alignment explanation


    Indices: 3250--3314  Score: 85
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       3240 TTTAGGCTAC

                           *  *   *          
       3250 TTTGATAAAGACTATTATTGTACTTGATGTGTA
          1 TTTGATAAAGACTATAATCGTAATTGATGTGTA

                  * *                       
       3283 TTTGATGAGGACTATAATCGTAATTGATGTGT
          1 TTTGATAAAGACTATAATCGTAATTGATGTGT

       3315 CTTTAGCTCG


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  33   27  1.00

ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43


Consensus pattern (33 bp):   
TTTGATAAAGACTATAATCGTAATTGATGTGTA
Done.