Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4058

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 357

Length: 596
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31


Found at i:66 original size:40 final size:42

Alignment explanation


    Indices: 22--110  Score: 101
    Period size: 42  Copynumber: 2.2  Consensus size: 42

         12 CTTGAGGGCG

                  *                                   
         22 CGATTTGCTGCCACAT-CA-TCAAATCACGCTGACGTGGACA
          1 CGATTTCCTGCCACATACACTCAAATCACGCTGACGTGGACA

                      * * *      * *   *              
         62 CGATTTCCTGGCGCGTACACTGACATCGCGCTGACGTGGACA
          1 CGATTTCCTGCCACATACACTCAAATCACGCTGACGTGGACA

                   
        104 CGATTTC
          1 CGATTTC

        111 GCGGAAAAAG


Statistics
Matches: 40,  Mismatches: 7, Indels: 2
        0.82            0.14        0.04

Matches are distributed among these distances:
  40   12  0.30
  41    2  0.05
  42   26  0.65

ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24


Consensus pattern (42 bp):   
CGATTTCCTGCCACATACACTCAAATCACGCTGACGTGGACA
Done.