Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3407

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 451

Length: 752
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33


Found at i:584 original size:17 final size:17

Alignment explanation


    Indices: 562--601  Score: 71
    Period size: 17  Copynumber: 2.4  Consensus size: 17

        552 TCCTAGATTT

                       *     
        562 TGATACCCATATCTTTC
          1 TGATACCCATAACTTTC

                             
        579 TGATACCCATAACTTTC
          1 TGATACCCATAACTTTC

                  
        596 TGATAC
          1 TGATAC

        602 TCGTATATTT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  17   22  1.00

ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38


Consensus pattern (17 bp):   
TGATACCCATAACTTTC
Done.