Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1255

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2253
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36


Found at i:309 original size:31 final size:31

Alignment explanation


    Indices: 274--342  Score: 111
    Period size: 31  Copynumber: 2.2  Consensus size: 31

        264 CGAATAATAC

                                  *        
        274 AATGACTTAAATAAAAACTTTCGAATAGTTT
          1 AATGACTTAAATAAAAACTTTCAAATAGTTT

                        *        *         
        305 AATGACTTAAATGAAAACTTTTAAATAGTTT
          1 AATGACTTAAATAAAAACTTTCAAATAGTTT

                   
        336 AATGACT
          1 AATGACT

        343 ATCTTGTAAC


Statistics
Matches: 35,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  31   35  1.00

ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36


Consensus pattern (31 bp):   
AATGACTTAAATAAAAACTTTCAAATAGTTT
Done.