Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold880

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4728
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.30

Warning! 453 characters in sequence are not A, C, G, or T


Found at i:1282 original size:26 final size:26

Alignment explanation


    Indices: 1252--1303  Score: 95
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1242 AATAAAAGAA

                            *         
       1252 AACATTCAATATTTCAGTTTAATTAG
          1 AACATTCAATATTTCAATTTAATTAG

                                      
       1278 AACATTCAATATTTCAATTTAATTAG
          1 AACATTCAATATTTCAATTTAATTAG

       1304 CATTAATTTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42


Consensus pattern (26 bp):   
AACATTCAATATTTCAATTTAATTAG
Done.