Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1026

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3255
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.30

Warning! 701 characters in sequence are not A, C, G, or T


Found at i:798 original size:20 final size:21

Alignment explanation


    Indices: 775--819  Score: 74
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        765 AAGTGAGATT

                          *      
        775 CTAAA-TTTTTATTGATTAAA
          1 CTAAACTTTTTATTCATTAAA

                                 
        795 CTAAACTTTTTATTCATTAAA
          1 CTAAACTTTTTATTCATTAAA

                
        816 CTAA
          1 CTAA

        820 GTGAGTTGTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  20    5  0.22
  21   18  0.78

ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47


Consensus pattern (21 bp):   
CTAAACTTTTTATTCATTAAA

Done.