genome.fa.s3251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold557
Parameters: 2 7 7 80 10 50 1000
Length:  108604

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16540--16585	19	2.4	19	85	0	65	4	17	21	56	1.58
17254--17369	51	2.3	51	80	0	124	28	23	13	34	1.93
17215--17983	123	6.0	123	74	11	675	28	24	16	31	1.96
17402--17972	138	4.4	135	74	10	476	28	24	16	30	1.96
17254--17991	261	2.8	261	86	0	992	28	24	15	31	1.96
17759--17900	51	2.8	51	80	0	158	26	24	17	30	1.97
17831--17972	72	2.0	72	84	0	185	27	27	15	29	1.96
18354--18411	24	2.4	24	91	0	89	31	22	10	36	1.88
21983--22017	3	11.7	3	100	0	70	34	0	31	34	1.58
24922--25647	361	2.0	361	97	0	1384	30	11	16	41	1.83
28651--28874	3	74.7	3	99	0	439	33	32	0	33	1.58
28873--28916	3	14.7	3	100	0	88	65	0	0	34	0.93
29749--29792	19	2.3	19	88	0	61	9	20	13	56	1.64
30420--30557	51	2.7	51	82	0	168	27	22	18	31	1.97
30472--30950	123	3.8	123	78	11	489	26	24	16	32	1.96
30293--30930	261	2.4	261	86	1	850	27	24	16	31	1.96
30832--31004	51	3.4	50	76	4	186	27	26	15	30	1.96
30856--31052	102	1.9	102	90	0	313	27	26	17	28	1.97
30865--31057	51	3.8	51	77	0	197	26	26	16	30	1.97
31030--31073	21	2.1	21	86	0	61	20	34	4	40	1.73
30686--31125	225	2.0	225	88	0	666	27	25	15	31	1.96
39529--39570	18	2.3	18	100	0	84	33	28	4	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45106--45158	17	3.2	17	81	10	65	45	0	5	49	1.26
60406--60498	40	2.3	40	88	0	141	25	15	20	38	1.91
70786--71317	266	2.0	266	92	2	881	38	13	15	32	1.86
73691--73790	51	2.0	51	89	0	155	31	26	13	30	1.93
73824--74564	123	5.8	123	73	13	587	29	24	15	30	1.96
73691--74564	261	3.3	261	87	0	1178	29	24	15	30	1.96
74059--74209	51	3.0	51	77	0	158	27	25	17	29	1.97
74127--74271	72	2.0	71	81	4	166	28	24	13	33	1.93
74208--74322	51	2.2	52	83	4	144	28	25	16	29	1.97
74332--74470	51	2.7	51	79	0	152	28	24	14	32	1.94
74408--74542	72	1.9	72	80	0	162	28	28	13	29	1.94
74739--74787	24	2.0	24	96	0	89	32	24	10	32	1.89
75765--75856	48	1.9	48	84	6	125	15	17	19	47	1.82
84509--84544	17	2.1	18	89	5	56	66	11	2	19	1.35
85207--85268	3	20.7	3	93	0	61	56	4	6	32	1.46
89884--89936	17	3.2	17	76	10	56	45	1	5	47	1.37
93029--93129	51	2.0	51	86	0	139	28	24	15	30	1.96
93141--93278	51	2.7	51	82	0	168	28	22	18	30	1.98
93193--93900	123	5.5	123	73	13	618	27	24	17	30	1.97
93014--93900	261	3.4	261	88	1	1303	27	24	16	30	1.97
93316--93800	138	3.6	136	74	12	511	27	24	17	30	1.97
93551--93651	51	2.0	51	84	0	130	25	22	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93575--93733	87	1.8	87	81	0	201	26	23	20	29	1.99
93663--93809	51	2.9	51	82	0	186	26	25	18	29	1.98
93787--93830	21	2.1	21	91	0	70	20	31	6	40	1.79
108211--108263	17	3.2	17	81	10	65	45	0	5	49	1.26

Tables:   1

The End!