Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold795

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6395
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36


Found at i:5336 original size:18 final size:18

Alignment explanation


    Indices: 5313--5352  Score: 71
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       5303 GCATCAATTT

                              
       5313 AATTAGTAAATTTTAAAC
          1 AATTAGTAAATTTTAAAC

                             *
       5331 AATTAGTAAATTTTAAAT
          1 AATTAGTAAATTTTAAAC

                
       5349 AATT
          1 AATT

       5353 TGTTTCTTTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42


Consensus pattern (18 bp):   
AATTAGTAAATTTTAAAC
Done.