Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1205

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2372
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25


Found at i:161 original size:92 final size:92

Alignment explanation


    Indices: 1--2368  Score: 2832
    Period size: 92  Copynumber: 25.8  Consensus size: 92

                                    * *           *  *   *                 * 
          1 ACAAGATCTGATATCTTCGATCCCTTTCGCTGCCAAATTCAAGAAAACAAGATCTGATATCTTTG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                    *            *     
         66 ATCCCCTCTGCTGCCAAATACCGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                      *    *              *        *            *  *         
         93 ACAAGATCTGCTATCGTCGATCCCCTCCGCAGCCAAATATAGGAAGACAAGAACTAATATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                 *              *    * 
        158 ATCCCTTCCGCTGCCAAATATAGGATG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                                      *  *  *                     *  *       
        185 ACAAGATCT-ACTATCTTCGATCCCCACCTC-CCCAAATACAGGAAGACAAGATTTGCTATCTTC
          1 ACAAGATCTGA-TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTC

                                         
        248 GA-CTCCCTCCGCTGCCAAATACAGGAAG
         65 GATC-CCCTCCGCTGCCAAATACAGGAAG

               *      *    *      * *   *                *    *  *           
        276 ACAGGATCTGCTATCCTCGATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                          * *          
        341 ATCCCCTCCGCTGCTAGATACAGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                      *       *                    *       *         *       
        368 ACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGAGATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                *        *         *    
        433 ATCCGCTCCGCT-ACAGAATACATGAAG
         66 ATCCCCTCCGCTGCCA-AATACAGGAAG

                                                             *      *    *   
        460 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

               * *   *                *
        525 ATCTCTTCCACTGCCAAATACAGGAAT
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                *  *                         * *                    *       *
        552 ACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGATACAGGAAGACAAGATCTGCTATCTTCA
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                                *      
        617 ATCCCCTCCGCTGCCAAATATAGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

             *         *           *        *         *                      
        644 ATAAGATCTGAGATCTTCGATCCGCTCCGCT-ACAGAATACATGAAGACAAGATCTGATATCTTC
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCA-AATACAGGAAGACAAGATCTGATATCTTC

                                        
        708 GATCCCCTCCGCTGCCAAATACAGGAAG
         65 GATCCCCTCCGCTGCCAAATACAGGAAG

               *      *    *      * *   *                *    *  *           
        736 ACAGGATCTGCTATCCTCGATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                          * *          
        801 ATCCCCTCCGCTGCTAGATACAGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                      *       *                    *       *         *       
        828 ACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGAGATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                *        *         *    
        893 ATCCGCTCCGCT-ACAGAATACATGAAG
         66 ATCCCCTCCGCTGCCA-AATACAGGAAG

                                                             *      *    *   
        920 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

               * *   *                *
        985 ATCTCTTCCACTGCCAAATACAGGAAT
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                *  *                         * *                    *       *
       1012 ACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGATACAGGAAGACAAGATCTGCTATCTTCA
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                                *      
       1077 ATCCCCTCCGCTGCCAAATATAGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

             *         *           *        *         *                      
       1104 ATAAGATCTGAGATCTTCGATCCGCTCCGCT-ACAGAATACATGAAGACAAGATCTGATATCTTC
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCA-AATACAGGAAGACAAGATCTGATATCTTC

                                        
       1168 GATCCCCTCCGCTGCCAAATACAGGAAG
         65 GATCCCCTCCGCTGCCAAATACAGGAAG

               *      *    *      * *   *                *    *  *           
       1196 ACAGGATCTGCTATCCTCGATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                          * *          
       1261 ATCCCCTCCGCTGCTAGATACAGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                      *       *                    *       *         *       
       1288 ACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGAGATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                *        *         *    
       1353 ATCCGCTCCGCT-ACAGAATACATGAAG
         66 ATCCCCTCCGCTGCCA-AATACAGGAAG

                                                             *      *    *   
       1380 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

               * *   *                *
       1445 ATCTCTTCCACTGCCAAATACAGGAAT
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                *  *                         * *                    *       *
       1472 ACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGATACAGGAAGACAAGATCTGCTATCTTCA
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                                *      
       1537 ATCCCCTCCGCTGCCAAATATAGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

             *         *           *        *         *                      
       1564 ATAAGATCTGAGATCTTCGATCCGCTCCGCT-ACAGAATACATGAAGACAAGATCTGATATCTTC
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCA-AATACAGGAAGACAAGATCTGATATCTTC

                                        
       1628 GATCCCCTCCGCTGCCAAATACAGGAAG
         65 GATCCCCTCCGCTGCCAAATACAGGAAG

               *      *    *      * *   *                *    *  *           
       1656 ACAGGATCTGCTATCCTCGATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                          * *          
       1721 ATCCCCTCCGCTGCTAGATACAGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                      *       *                    *       *         *       
       1748 ACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGAGATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                *        *         *    
       1813 ATCCGCTCCGCT-ACAGAATACATGAAG
         66 ATCCCCTCCGCTGCCA-AATACAGGAAG

                                                             *      *    *   
       1840 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

               * *   *                *
       1905 ATCTCTTCCACTGCCAAATACAGGAAT
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                *  *                         * *                    *       *
       1932 ACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGATACAGGAAGACAAGATCTGCTATCTTCA
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                                *      
       1997 ATCCCCTCCGCTGCCAAATATAGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

             *         *           *        *         *                      
       2024 ATAAGATCTGAGATCTTCGATCCGCTCCGCT-ACAGAATACATGAAGACAAGATCTGATATCTTC
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCA-AATACAGGAAGACAAGATCTGATATCTTC

                                        
       2088 GATCCCCTCCGCTGCCAAATACAGGAAG
         65 GATCCCCTCCGCTGCCAAATACAGGAAG

                                                             *      *    *   
       2116 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

               * *   *                *
       2181 ATCTCTTCCACTGCCAAATACAGGAAT
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

                *  *                         * *                    *       *
       2208 ACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGATACAGGAAGACAAGATCTGCTATCTTCA
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                                *      
       2273 ATCCCCTCCGCTGCCAAATATAGGAAG
         66 ATCCCCTCCGCTGCCAAATACAGGAAG

             *         *           *       * *                               
       2300 ATAAGATCTGAGATCTTCGATCCGCTCCGCTACAAAATACAGGAAGACAAGATCTGATATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG

                
       2365 ATCC
         66 ATCC

       2369 ACTC


Statistics
Matches: 1906,  Mismatches: 349, Indels: 42
        0.83            0.15        0.02

Matches are distributed among these distances:
  90    1  0.00
  91   80  0.04
  92  1808  0.95
  93   17  0.01

ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25


Consensus pattern (92 bp):   
ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG
ATCCCCTCCGCTGCCAAATACAGGAAG

Found at i:2368 original size:230 final size:230

Alignment explanation


    Indices: 1--2367  Score: 3959
    Period size: 230  Copynumber: 10.3  Consensus size: 230

                                    * *           *  *   *   *      *    * * 
          1 ACAAGATCTGATATCTTCGATCCCTTTCGCTGCCAAATTCAAGAAAACAAGATCTGATATCTTTG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

               * *  **           *    *    *  *  *    *              *  * *  
         66 ATCCCCTCTGCTGCCAAATACCGGAAGACAAGATCTGCTATCGTCGATCCCCTCCGCAGCCAAAT
         66 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT

             *            *  **       *     *                   *  *         
        131 ATAGGAAGACAAGAACTAATATCTTCGATCCCTTCCGCTGCCAAATATAGGATGACAAGATCT-A
        131 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA

             *           * *  * **         *    
        195 CTATCTTCGATCCCCACCTCCCCA-AATACAGGAAG
        196 -GATCTTCGATCCGCTCCGCTACAGAATACATGAAG

                   *  *                                                      
        230 ACAAGATTTGCTATCTTCGA-CTCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTC
          1 ACAAGATCTGATATCTTCGATC-CCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTC

                                                                             
        294 GATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGA
         65 GATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGA

                                                                             
        359 TACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTG
        130 TACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTG

                                                
        424 AGATCTTCGATCCGCTCCGCTACAGAATACATGAAG
        195 AGATCTTCGATCCGCTCCGCTACAGAATACATGAAG

                                                                             
        460 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

                                                                             
        525 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT
         66 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT

                                                                             
        590 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA
        131 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA

                                               
        655 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG
        196 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG

                                                                             
        690 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

                                                                             
        755 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT
         66 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT

                                                                             
        820 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA
        131 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA

                                               
        885 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG
        196 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG

                                                                             
        920 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

                                                                             
        985 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT
         66 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT

                                                                             
       1050 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA
        131 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA

                                               
       1115 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG
        196 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG

                                                                             
       1150 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

                                                                             
       1215 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT
         66 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT

                                                                             
       1280 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA
        131 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA

                                               
       1345 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG
        196 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG

                                                                             
       1380 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

                                                                             
       1445 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT
         66 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT

                                                                             
       1510 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA
        131 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA

                                               
       1575 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG
        196 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG

                                                                             
       1610 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

                                                                             
       1675 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT
         66 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT

                                                                             
       1740 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA
        131 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA

                                               
       1805 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG
        196 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG

                                                                             
       1840 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

                                                                             
       1905 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT
         66 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT

                                                                             
       1970 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA
        131 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA

                                               
       2035 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG
        196 GATCTTCGATCCGCTCCGCTACAGAATACATGAAG

                                                             *      *    *   
       2070 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

               * *   *                *   **  *  *    *      * *   *    * *  
       2135 ATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCGATCTCTTCCACTGCCAAAT
         66 ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT

                   *    *  *  *       *              * *   *       *        *
       2200 ACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGATACAGGAAGACAAGATCTGC
        131 ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA

            *      *    *        *       * *    
       2265 TATCTTCAATCCCCTCCGCTGCCA-AATATAGGAAG
        196 GATCTTCGATCCGCTCCGCT-ACAGAATACATGAAG

             *         *           *       * *               *      *    *   
       2300 ATAAGATCTGAGATCTTCGATCCGCTCCGCTACAAAATACAGGAAGACAAGATCTGATATCTTCG
          1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG

               
       2365 ATC
         66 ATC

       2368 CACTC


Statistics
Matches: 2054,  Mismatches: 79, Indels: 9
        0.96            0.04        0.00

Matches are distributed among these distances:
 228    1  0.00
 229  176  0.09
 230  1874  0.91
 231    3  0.00

ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25


Consensus pattern (230 bp):   
ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAGGATCTGCTATCCTCG
ATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCTTCGATCCCCTCCGCTGCTAGAT
ACAGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGA
GATCTTCGATCCGCTCCGCTACAGAATACATGAAG
Done.