Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3202

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 471

Length: 785
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41


Found at i:597 original size:17 final size:17

Alignment explanation


    Indices: 575--613  Score: 53
    Period size: 17  Copynumber: 2.3  Consensus size: 17

        565 CCCAATGGAA

                              
        575 GTTTTT-TGTTTCTTTTT
          1 GTTTTTGTGTTT-TTTTT

                             
        592 GTTTTTGTGTTTTTTTT
          1 GTTTTTGTGTTTTTTTT

            *    
        609 CTTTT
          1 GTTTT

        614 CTTTTTTTCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  17   15  0.75
  18    5  0.25

ACGTcount: A:0.00, C:0.05, G:0.13, T:0.82


Consensus pattern (17 bp):   
GTTTTTGTGTTTTTTTT

Found at i:609 original size:23 final size:24

Alignment explanation


    Indices: 577--632  Score: 69
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        567 CAATGGAAGT

                                  * *
        577 TTTTTGTTTCTTTT-TGTTTTTGTG
          1 TTTTT-TTTCTTTTCTGTTTTTCTC

                           *        
        601 TTTTTTTTCTTTTCTTTTTTTCTC
          1 TTTTTTTTCTTTTCTGTTTTTCTC

                    
        625 TTTTTTTT
          1 TTTTTTTT

        633 TGGATTGAAT


Statistics
Matches: 28,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  23    8  0.29
  24   20  0.71

ACGTcount: A:0.00, C:0.09, G:0.07, T:0.84


Consensus pattern (24 bp):   
TTTTTTTTCTTTTCTGTTTTTCTC

Found at i:619 original size:15 final size:14

Alignment explanation


    Indices: 601--633  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

        591 TGTTTTTGTG

                          
        601 TTTTTTTTCT-TTT
          1 TTTTTTTTCTCTTT

            *             
        614 CTTTTTTTCTCTTT
          1 TTTTTTTTCTCTTT

                  
        628 TTTTTT
          1 TTTTTT

        634 GGATTGAATC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  13    9  0.53
  14    8  0.47

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (14 bp):   
TTTTTTTTCTCTTT
Done.