Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2675

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 529

Length: 882
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33


Found at i:815 original size:40 final size:40

Alignment explanation


    Indices: 721--865  Score: 184
    Period size: 40  Copynumber: 3.6  Consensus size: 40

        711 TACTCGAATG

                  *                 *                
        721 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
          1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT

             *      *                                
        762 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
          1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT

                                        *      *   *
        802 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
          1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT

                     *    *         
        842 ATATCCGGGTTAAGACCCGAAGGC
          1 ATATCCGGGCTAAGTCCCGAAGGC

        866 CTTGTGCGAG


Statistics
Matches: 91,  Mismatches: 11, Indels: 5
        0.85            0.10        0.05

Matches are distributed among these distances:
  39    1  0.01
  40   62  0.68
  41   27  0.30
  42    1  0.01

ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23


Consensus pattern (40 bp):   
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Done.