Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2749

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 514

Length: 857
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.35


Found at i:145 original size:82 final size:80

Alignment explanation


    Indices: 1--155  Score: 222
    Period size: 82  Copynumber: 1.9  Consensus size: 80

                                       * *   **                      *       
          1 TATTATGAGTTGATTTTTGAAAAAAAATAGAAATTAAAAAAAAATACCTCAGCATGATCCGAGGC
          1 TATTATGAGTTGATTTTTGAAAAAAAAAAAAAACCAAAAAAAAATACCTCAGCATGACCCGAGGC

                           
         66 TCAACTCACCTCTCG
         66 TCAACTCACCTCTCG

                                                                    *        
         81 TATTATGAGTTGATTTTT-AAAAAGAAAAAAAAACCAAAATTAAAAATACCTCAGCGTGACCCGA
          1 TATTATGAGTTGATTTTTGAAAAA-AAAAAAAAACCAAAA--AAAAATACCTCAGCATGACCCGA

                       
        145 GGCTCAACTCA
         63 GGCTCAACTCA

        156 ATCCAAGAAT


Statistics
Matches: 66,  Mismatches: 6, Indels: 4
        0.87            0.08        0.05

Matches are distributed among these distances:
  79    5  0.08
  80   29  0.44
  82   32  0.48

ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26


Consensus pattern (80 bp):   
TATTATGAGTTGATTTTTGAAAAAAAAAAAAAACCAAAAAAAAATACCTCAGCATGACCCGAGGC
TCAACTCACCTCTCG
Done.